AlfalfaGEDB | Msa1152390

M. sativa cultivar zhongmu-4 / Msa1152390

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152390	XP_013449155.1	99.057	530	5	0	1	530	1	530	0.0	1093

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152390	sp\|Q8W4I7\|CDPKD_ARATH	86.226	530	71	2	1	530	1	528	0.0	961

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152390	A0A072U0I0	99.057	530	5	0	1	530	1	530	0.0	1093

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1152390	MtrunA17_Chr7g0242561	99.057	530	5	0	1	530	1	530	1093
Msa1152390	MtrunA17_Chr4g0059951	68.373	547	156	3	1	530	1	547	772
Msa1152390	MtrunA17_Chr7g0257751	67.293	532	172	1	1	530	1	532	754
Msa1152390	MtrunA17_Chr1g0173541	66.038	530	176	2	1	530	1	526	734
Msa1152390	MtrunA17_Chr4g0033371	59.414	478	193	1	51	528	67	543	621
Msa1152390	MtrunA17_Chr0c02g0489761	54.876	523	205	7	1	497	1	518	570
Msa1152390	MtrunA17_Chr5g0441691	53.996	513	215	4	1	497	1	508	567
Msa1152390	MtrunA17_Chr1g0176751	57.634	465	190	2	51	510	119	581	556
Msa1152390	MtrunA17_Chr1g0170281	57.522	452	190	1	47	498	109	558	547
Msa1152390	MtrunA17_Chr8g0387671	59.276	442	179	1	56	497	66	506	545

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1152390	AT3G51850.1	86.226	530	71	2	1	530	1	528	961
Msa1152390	AT3G51850.2	85.655	481	67	2	1	481	1	479	865
Msa1152390	AT1G74740.1	67.978	534	160	3	1	527	1	530	743
Msa1152390	AT5G12480.1	65.794	535	177	4	1	530	1	534	739
Msa1152390	AT5G19450.2	65.977	532	179	2	1	530	1	532	733
Msa1152390	AT5G19450.1	65.977	532	179	2	1	530	1	532	733
Msa1152390	AT3G51850.3	84.819	415	61	2	1	415	1	413	733
Msa1152390	AT1G18890.1	67.416	534	167	4	1	527	1	534	723
Msa1152390	AT3G57530.1	62.894	539	188	4	1	530	1	536	715
Msa1152390	AT2G41860.1	62.167	526	197	2	1	526	1	524	687

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Find 171 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAATTGAAATTGA+AGG	0.513628	7_4:+37914799	None:intergenic
AAAGATGGTTCTTTAAACTT+AGG	0.374121	7_4:-37908882	Msa1152390:CDS
AAAGCCGTCGTGTTATTTAT+TGG	0.259621	7_4:-37908376	Msa1152390:three_prime_UTR
AAATGACGAGCATCTTCACA+AGG	0.673979	7_4:-37909234	Msa1152390:CDS
AACATCATCAACATCAACGG+CGG	0.724157	7_4:+37914412	None:intergenic
AACTGGAACGGATTGGAGAA+AGG	0.523785	7_4:-37908958	Msa1152390:CDS
AAGATGGATACTGATAATGA+TGG	0.614777	7_4:-37909679	Msa1152390:CDS
AAGGCATTCCGTAGCTCTTC+TGG	0.378333	7_4:+37909170	None:intergenic
AAGGCTCCAAACGTTCCTCT+TGG	0.553804	7_4:-37909907	Msa1152390:CDS
AAGTCCATATTATATGGCTC+CGG	0.567447	7_4:-37911082	Msa1152390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGCTGTTCATCTTGTTA+TGG	-	chr7_4:37908994-37909013	Msa1152390:CDS	30.0%
TTGGGTCTAGTATATTTGAT+AGG	-	chr7_4:37909522-37909541	Msa1152390:intron	30.0%
GCTTAATCTAACACAAACAA+AGG	+	chr7_4:37909725-37909744	None:intergenic	30.0%
TTTATGCTTCATTTCGCTTA+AGG	+	chr7_4:37909804-37909823	None:intergenic	30.0%
GGATATATTAAAGTTGTTGG+TGG	-	chr7_4:37909979-37909998	Msa1152390:intron	30.0%
AACCAGTATGGAAAAACTAA+AGG	-	chr7_4:37910141-37910160	Msa1152390:intron	30.0%
ATTTACACATTTGGAGGTTT+AGG	-	chr7_4:37910322-37910341	Msa1152390:intron	30.0%
TTTAGTCTGTTAAGTGTCAA+AGG	+	chr7_4:37910573-37910592	None:intergenic	30.0%
GTGATGTAATTAGATGTGTT+AGG	-	chr7_4:37910687-37910706	Msa1152390:intron	30.0%
GGCATCTTCATTTCATATTA+TGG	-	chr7_4:37910799-37910818	Msa1152390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	37908364	37914964	37908364	ID=Msa1152390;Name=Msa1152390
chr7_4	mRNA	37908364	37914964	37908364	ID=Msa1152390-mRNA-1;Parent=Msa1152390;Name=Msa1152390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=250\|1\|1\|1\|0.62\|0.55\|9\|327\|530
chr7_4	exon	37908364	37908484	37908364	ID=Msa1152390-mRNA-1:exon:9040;Parent=Msa1152390-mRNA-1
chr7_4	exon	37908666	37909021	37908666	ID=Msa1152390-mRNA-1:exon:9039;Parent=Msa1152390-mRNA-1
chr7_4	exon	37909100	37909330	37909100	ID=Msa1152390-mRNA-1:exon:9038;Parent=Msa1152390-mRNA-1
chr7_4	exon	37909591	37909758	37909591	ID=Msa1152390-mRNA-1:exon:9037;Parent=Msa1152390-mRNA-1
chr7_4	exon	37909840	37909955	37909840	ID=Msa1152390-mRNA-1:exon:9036;Parent=Msa1152390-mRNA-1
chr7_4	exon	37910391	37910543	37910391	ID=Msa1152390-mRNA-1:exon:9035;Parent=Msa1152390-mRNA-1
chr7_4	exon	37910986	37911129	37910986	ID=Msa1152390-mRNA-1:exon:9034;Parent=Msa1152390-mRNA-1
chr7_4	exon	37913984	37914128	37913984	ID=Msa1152390-mRNA-1:exon:9033;Parent=Msa1152390-mRNA-1
chr7_4	exon	37914229	37914964	37914229	ID=Msa1152390-mRNA-1:exon:9032;Parent=Msa1152390-mRNA-1
chr7_4	five_prime_UTR	37914715	37914964	37914715	ID=Msa1152390-mRNA-1:five_prime_utr;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37914229	37914714	37914229	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37913984	37914128	37913984	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37910986	37911129	37910986	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37910391	37910543	37910391	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37909840	37909955	37909840	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37909591	37909758	37909591	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37909100	37909330	37909100	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	CDS	37908872	37909021	37908872	ID=Msa1152390-mRNA-1:cds;Parent=Msa1152390-mRNA-1
chr7_4	three_prime_UTR	37908666	37908871	37908666	ID=Msa1152390-mRNA-1:three_prime_utr;Parent=Msa1152390-mRNA-1
chr7_4	three_prime_UTR	37908364	37908484	37908364	ID=Msa1152390-mRNA-1:three_prime_utr;Parent=Msa1152390-mRNA-1

Gene Sequence

>Msa1152390

ATGGGTAACTGCTGCAGATCTCCGGCCGCCGTCGCACGCGAAGATGTCAAATCCTCTTTCTCCAACCACGACCACCCTAAACGAACTGAAACCACCGCCAACAAAAAAACCCCACCGGTCACCGTCCTCGCCGCCACCAAAACCTCCGACAACATGGAAGACCGTTACCTCATCGACCGTGAACTCGGCCGCGGCGAATTCGGAGTAACCTATCTCTGTATCGACCGTGACACTCGCGAGCTACTCGCCTGCAAAAGCATCTCCAAACGGAAGCTACGAACCGCCGTTGATGTTGATGATGTTCGCCGTGAAGTTGCTATCATGCGCCATTTGCCTAAGAGTTCGAGTATTGTGACTCTTCGTGAAGCGTGTGAGGATGATAATGCTGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGGGAGCTTTTTGATCGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCGGCCGCGGCAGTTGCGAGGACGATTGTGGAGGTTGTGCAGCTTTGTCATAAGCATGGAGTGATTCATCGCGATCTTAAGCCGGAGAATTTCTTGTTTGCGAATAAGAAGGAGAATTCGCCGCTTAAAGCTATTGATTTCGGGTTGTCTATTTTCTTTAAGCCAGGCGAGAAATTTTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCGGAGGTGCTCAAGCGGAACTATGGACCTGAAATAGATATATGGAGTGCAGGAGTGATACTCTATATCTTATTGTGCGGTGTTCCCCCGTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAAGCTATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTGGAACCAGACCCTAAGCTTCGATTAACGGCCAAACAAGTGCTTGAGCATCCTTGGCTCCAAAATGCTAAGAAGGCTCCAAACGTTCCTCTTGGTGATGTTGTCAAGTCAAGGCTTAAGCAATTCTCAATGATGAATAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGAGATGTTTAAGAAGATGGATACTGATAATGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTCCAAAAGCATCAGTCTCAACTTGCTGAGTCTGAAGTTCAGATGTTTATTGAAGCTGTAGATAATAATGGTAAGGGAACACTAGATTATGGAGAATTTGTTGCCATTTCCCTTCATTTAAAAAGGATGGCAAATGACGAGCATCTTCACAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATATATTGAACCAGAAGAGCTACGGAATGCCTTGATGGAAGATGGAACTGATGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACGGACAAGGATGGAAAAATCAGCTATGATGAATTTGTGGCTATGATGAAAACTGGAACGGATTGGAGAAAGGCTTCTCGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTAATGAAAGATGGTTCTTTAAACTTAGGAAATGAGTAG

Protein sequence

>Msa1152390

MGNCCRSPAAVAREDVKSSFSNHDHPKRTETTANKKTPPVTVLAATKTSDNMEDRYLIDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVDDVRREVAIMRHLPKSSSIVTLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKEMFKKMDTDNDGIVSIEELKAGFQKHQSQLAESEVQMFIEAVDNNGKGTLDYGEFVAISLHLKRMANDEHLHKAFSYFDKDGNGYIEPEELRNALMEDGTDDCTDVANDIFQEVDTDKDGKISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE*