AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153920 MtrunA17_Chr2g0300441 76.271 236 26 1 1 206 1 236 2.49e-127 358
Msa1153920 MtrunA17_Chr7g0238991 72.973 222 29 2 16 206 27 248 2.00e-112 321
Msa1153920 MtrunA17_Chr8g0355091 65.401 237 51 2 1 206 1 237 2.40e-106 305
Msa1153920 MtrunA17_Chr1g0206701 65.778 225 47 1 1 195 1 225 9.66e-101 291
Msa1153920 MtrunA17_Chr2g0292791 66.667 219 43 1 1 189 1 219 2.22e-100 290
Msa1153920 MtrunA17_Chr1g0206721 66.667 219 43 1 1 189 1 219 5.33e-100 289
Msa1153920 MtrunA17_Chr1g0149391 63.927 219 49 1 1 189 1 219 6.87e-96 279
Msa1153920 MtrunA17_Chr3g0099421 63.014 219 51 1 1 189 26 244 1.20e-93 274
Msa1153920 MtrunA17_Chr1g0208561 60.851 235 44 4 1 195 1 227 6.61e-92 268
Msa1153920 MtrunA17_Chr2g0317451 58.051 236 68 2 1 205 1 236 1.06e-91 268
Msa1153920 MtrunA17_Chr3g0089141 60.851 235 44 4 1 195 1 227 2.15e-91 267
Msa1153920 MtrunA17_Chr2g0317481 58.051 236 68 2 1 205 1 236 3.18e-91 267
Msa1153920 MtrunA17_Chr2g0325971 61.277 235 43 4 1 195 1 227 5.00e-91 266
Msa1153920 MtrunA17_Chr5g0422941 56.540 237 72 2 1 206 1 237 9.17e-91 266
Msa1153920 MtrunA17_Chr1g0188671 57.333 225 66 1 1 195 39 263 1.00e-88 262
Msa1153920 MtrunA17_Chr1g0208581 59.322 236 46 4 1 195 1 227 2.76e-87 256
Msa1153920 MtrunA17_Chr1g0206691 59.091 220 59 2 18 206 1 220 2.04e-86 254
Msa1153920 MtrunA17_Chr1g0187361 56.444 225 68 1 1 195 1 225 5.79e-86 253
Msa1153920 MtrunA17_Chr5g0422421 56.889 225 67 1 1 195 1 225 2.90e-84 249
Msa1153920 MtrunA17_Chr3g0099411 63.000 200 63 2 1 189 1 200 3.18e-84 248
Msa1153920 MtrunA17_Chr5g0419601 56.000 225 69 1 1 195 1 225 1.25e-83 248
Msa1153920 MtrunA17_Chr1g0206991 62.983 181 37 1 1 151 1 181 6.44e-75 223
Msa1153920 MtrunA17_Chr3g0089151 84.848 99 15 0 1 99 1 99 1.23e-56 175
Msa1153920 MtrunA17_Chr2g0300421 79.381 97 20 0 1 97 1 97 2.00e-50 161
Msa1153920 MtrunA17_Chr3g0119901 46.053 152 52 1 9 130 9 160 2.43e-41 139
Msa1153920 MtrunA17_Chr3g0085241 40.341 176 75 1 3 148 35 210 3.61e-41 140
Msa1153920 MtrunA17_Chr3g0111931 60.417 96 34 1 21 116 2 93 3.54e-33 115
Msa1153920 MtrunA17_Chr1g0187351 80.303 66 13 0 18 83 1 66 5.48e-33 113
Msa1153920 MtrunA17_Chr8g0379021 37.143 175 78 4 5 153 8 176 1.31e-30 110
Msa1153920 MtrunA17_Chr3g0111841 81.356 59 11 0 15 73 2 60 1.14e-28 102
Msa1153920 MtrunA17_Chr2g0333981 35.849 159 76 2 5 137 8 166 2.34e-28 104
Msa1153920 MtrunA17_Chr4g0018951 40.476 126 57 2 22 129 25 150 2.36e-25 97.1
Msa1153920 MtrunA17_Chr1g0175611 55.128 78 35 0 9 86 2 79 9.02e-23 90.1
Msa1153920 MtrunA17_Chr1g0175601 52.564 78 37 0 9 86 2 79 1.27e-22 90.1
Msa1153920 MtrunA17_Chr1g0169761 57.971 69 29 0 9 77 2 70 1.87e-22 89.7
Msa1153920 MtrunA17_Chr8g0376821 57.971 69 29 0 9 77 2 70 5.09e-22 88.6
Msa1153920 MtrunA17_Chr3g0111831 63.934 61 22 0 16 76 11 71 1.38e-21 84.7
Msa1153920 MtrunA17_Chr4g0074101 51.282 78 38 0 9 86 2 79 1.38e-21 87.8
Msa1153920 MtrunA17_Chr1g0180591 51.282 78 38 0 9 86 2 79 4.88e-21 85.9
Msa1153920 MtrunA17_Chr8g0357771 55.072 69 31 0 9 77 2 70 1.91e-20 84.3
Msa1153920 MtrunA17_Chr4g0071601 31.250 160 74 4 22 145 25 184 7.03e-20 83.2
Msa1153920 MtrunA17_Chr8g0356071 53.623 69 32 0 9 77 2 70 1.76e-19 81.6
Msa1153920 MtrunA17_Chr4g0057151 38.793 116 62 2 12 126 5 112 1.16e-17 77.8
Msa1153920 MtrunA17_Chr3g0077501 50.000 70 33 1 7 76 2 69 1.16e-17 78.2
Msa1153920 MtrunA17_Chr8g0351041 30.380 158 88 3 12 147 5 162 3.47e-17 75.5
Msa1153920 MtrunA17_Chr4g0049901 53.846 65 30 0 11 75 30 94 3.68e-17 77.0
Msa1153920 MtrunA17_Chr3g0097101 43.529 85 46 1 2 86 12 94 5.57e-17 76.6
Msa1153920 MtrunA17_Chr4g0052081 50.704 71 35 0 9 79 2 72 2.70e-16 73.6
Msa1153920 MtrunA17_Chr8g0351051 48.571 70 34 1 7 76 2 69 3.72e-16 74.3
Msa1153920 MtrunA17_Chr5g0427401 48.485 66 34 0 11 76 4 69 6.30e-16 73.6
Msa1153920 MtrunA17_Chr8g0380021 48.571 70 34 1 7 76 18 85 7.54e-16 73.6
Msa1153920 MtrunA17_Chr7g0246431 31.852 135 70 3 12 126 5 137 8.88e-16 72.8
Msa1153920 MtrunA17_Chr6g0474371 46.479 71 35 2 7 76 2 70 1.03e-15 72.0
Msa1153920 MtrunA17_Chr2g0284911 48.571 70 34 1 7 76 17 84 1.30e-15 73.2
Msa1153920 MtrunA17_Chr4g0020221 41.667 84 47 1 7 90 2 83 1.65e-15 72.8
Msa1153920 MtrunA17_Chr8g0351031 31.818 132 71 2 12 124 5 136 1.86e-15 72.0
Msa1153920 MtrunA17_Chr2g0279821 45.714 70 36 1 7 76 2 69 1.91e-15 72.4
Msa1153920 MtrunA17_Chr6g0455511 39.216 102 56 3 7 104 2 101 2.17e-15 72.4
Msa1153920 MtrunA17_Chr3g0134451 40.196 102 58 3 9 108 2 102 2.22e-15 73.2
Msa1153920 MtrunA17_Chr4g0061691 45.070 71 36 2 7 76 2 70 2.96e-15 71.6
Msa1153920 MtrunA17_Chr5g0412461 45.455 66 36 0 11 76 4 69 3.94e-15 71.2
Msa1153920 MtrunA17_Chr4g0052061 47.887 71 37 0 9 79 2 72 4.71e-15 69.7
Msa1153920 MtrunA17_Chr5g0412271 45.455 66 36 0 11 76 4 69 5.26e-15 70.9
Msa1153920 MtrunA17_Chr4g0049541 35.644 101 60 2 7 104 2 100 5.81e-15 70.9
Msa1153920 MtrunA17_Chr5g0425191 54.717 53 24 0 9 61 2 54 8.15e-15 67.4
Msa1153920 MtrunA17_Chr8g0345001 30.508 177 83 6 2 147 13 180 1.01e-14 69.3
Msa1153920 MtrunA17_Chr1g0204111 47.143 70 35 1 7 76 18 85 1.29e-14 70.5
Msa1153920 MtrunA17_Chr8g0366231 32.203 118 67 4 7 123 2 107 1.52e-14 70.1
Msa1153920 MtrunA17_Chr5g0411691 45.714 70 36 1 7 76 2 69 2.06e-14 69.7
Msa1153920 MtrunA17_Chr7g0220111 46.479 71 35 2 7 76 2 70 2.07e-14 69.7
Msa1153920 MtrunA17_Chr1g0164791 45.833 72 35 2 7 76 2 71 3.77e-14 68.6
Msa1153920 MtrunA17_Chr4g0044071 50.877 57 28 0 9 65 2 58 4.04e-14 65.9
Msa1153920 MtrunA17_Chr1g0173161 49.206 63 30 1 7 69 2 62 4.90e-14 65.1
Msa1153920 MtrunA17_Chr7g0220121 42.254 71 38 2 7 76 2 70 7.21e-14 68.2
Msa1153920 MtrunA17_Chr2g0308251 44.000 75 40 1 7 81 2 74 1.05e-13 64.3
Msa1153920 MtrunA17_Chr5g0404951 47.222 72 34 2 7 76 2 71 1.32e-13 67.4
Msa1153920 MtrunA17_Chr4g0061671 29.630 189 113 8 7 179 2 186 2.10e-13 65.9
Msa1153920 MtrunA17_Chr5g0420091 45.070 71 36 2 7 76 2 70 2.24e-13 66.2
Msa1153920 MtrunA17_Chr7g0246381 44.928 69 31 2 7 70 2 68 2.80e-13 62.8
Msa1153920 MtrunA17_Chr5g0427921 45.763 59 30 1 7 65 2 58 3.64e-13 62.0
Msa1153920 MtrunA17_Chr5g0420081 36.170 94 48 3 9 90 2 95 3.84e-13 65.9
Msa1153920 MtrunA17_Chr3g0093131 31.852 135 61 3 26 129 36 170 5.22e-13 65.1
Msa1153920 MtrunA17_Chr3g0142191 46.667 60 32 0 12 71 5 64 5.22e-13 65.5
Msa1153920 MtrunA17_Chr8g0377561 50.000 58 27 1 7 64 2 57 6.91e-13 62.4
Msa1153920 MtrunA17_Chr3g0125241 43.056 72 37 2 7 76 27 96 7.49e-13 64.7
Msa1153920 MtrunA17_Chr3g0122251 40.449 89 47 3 7 91 2 88 7.66e-13 65.5
Msa1153920 MtrunA17_Chr1g0159661 45.588 68 34 2 7 74 2 66 1.06e-12 63.9
Msa1153920 MtrunA17_Chr4g0060841 37.113 97 54 4 9 101 2 95 1.45e-11 62.4
Msa1153920 MtrunA17_Chr1g0166611 36.364 99 57 2 20 112 17 115 5.94e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153920 AT5G60440.1 46.108 167 57 3 5 138 3 169 1.14e-41 143
Msa1153920 AT1G65360.1 34.081 223 97 7 5 181 3 221 2.70e-31 114
Msa1153920 AT1G01530.1 40.244 164 65 2 4 136 2 163 2.01e-30 112
Msa1153920 AT2G24840.1 40.252 159 64 3 9 136 63 221 2.45e-30 112
Msa1153920 AT4G36590.1 57.447 94 35 1 5 93 3 96 5.97e-29 108
Msa1153920 AT3G04100.1 41.000 100 56 1 2 98 7 106 1.19e-21 88.6
Msa1153920 AT1G72350.1 35.156 128 68 3 9 130 43 161 3.93e-20 85.1
Msa1153920 AT2G34440.1 52.174 69 33 0 9 77 2 70 1.44e-19 82.4
Msa1153920 AT3G66656.1 54.412 68 31 0 9 76 2 69 1.99e-19 82.0
Msa1153920 AT4G09960.3 44.444 90 47 2 5 93 26 113 2.92e-18 80.5
Msa1153920 AT4G09960.2 44.318 88 46 2 7 93 2 87 3.43e-18 79.7
Msa1153920 AT4G09960.1 44.318 88 46 2 7 93 2 87 4.44e-18 79.7
Msa1153920 AT4G09960.6 44.318 88 46 2 7 93 3 88 4.85e-18 79.7
Msa1153920 AT4G09960.5 44.318 88 46 2 7 93 12 97 5.58e-18 79.7
Msa1153920 AT4G09960.4 44.444 90 47 2 5 93 95 182 8.31e-18 80.5
Msa1153920 AT2G45660.2 50.000 66 33 0 12 77 5 70 2.01e-17 76.3
Msa1153920 AT1G28460.1 40.426 94 56 0 5 98 4 97 2.37e-17 76.6
Msa1153920 AT4G22950.2 46.667 75 40 0 12 86 5 79 3.24e-17 76.3
Msa1153920 AT2G45650.1 50.000 70 33 1 7 76 2 69 3.51e-17 77.8
Msa1153920 AT2G45660.1 50.000 66 33 0 12 77 5 70 5.17e-17 76.6
Msa1153920 AT4G18960.1 43.902 82 44 1 5 86 16 95 9.47e-17 76.6
Msa1153920 AT4G22950.3 46.667 75 40 0 12 86 5 79 1.46e-16 75.5
Msa1153920 AT4G22950.1 46.667 75 40 0 12 86 5 79 1.46e-16 75.5
Msa1153920 AT5G51870.2 52.308 65 31 0 12 76 5 69 1.80e-16 73.9
Msa1153920 AT5G51870.1 52.308 65 31 0 12 76 5 69 2.13e-16 74.7
Msa1153920 AT2G42830.1 48.000 75 37 1 2 76 12 84 2.70e-16 75.1
Msa1153920 AT2G42830.2 48.000 75 37 1 2 76 12 84 2.72e-16 75.1
Msa1153920 AT1G17310.1 39.130 138 73 3 8 140 47 178 2.81e-16 74.7
Msa1153920 AT3G58780.1 48.000 75 37 1 2 76 12 84 3.48e-16 74.7
Msa1153920 AT3G58780.5 48.000 75 37 1 2 76 18 90 3.59e-16 75.1
Msa1153920 AT5G51870.4 52.308 65 31 0 12 76 5 69 3.84e-16 74.3
Msa1153920 AT1G17310.2 39.130 138 73 3 8 140 58 189 3.97e-16 74.3
Msa1153920 AT5G51870.3 52.308 65 31 0 12 76 15 79 4.56e-16 74.3
Msa1153920 AT5G51870.5 52.308 65 31 0 12 76 28 92 4.93e-16 73.6
Msa1153920 AT3G58780.4 48.000 75 37 1 2 76 12 84 5.82e-16 74.7
Msa1153920 AT2G22540.3 48.485 66 34 0 11 76 4 69 7.32e-16 73.9
Msa1153920 AT2G22540.1 48.485 66 34 0 11 76 4 69 7.32e-16 73.9
Msa1153920 AT1G77980.1 47.887 71 36 1 9 78 2 72 7.56e-16 75.1
Msa1153920 AT3G57230.2 44.286 70 37 1 7 76 2 69 7.76e-16 71.6
Msa1153920 AT1G22130.1 40.909 88 51 1 9 95 2 89 9.04e-16 74.7
Msa1153920 AT1G77950.3 44.737 76 40 2 9 83 2 76 9.97e-16 73.6
Msa1153920 AT1G77950.2 44.737 76 40 2 9 83 2 76 9.97e-16 73.6
Msa1153920 AT1G77950.1 44.737 76 40 2 9 83 2 76 9.97e-16 73.6
Msa1153920 AT1G77950.4 44.737 76 40 2 9 83 2 76 9.97e-16 73.6
Msa1153920 AT5G13790.1 50.000 70 33 1 7 76 2 69 1.40e-15 73.6
Msa1153920 AT5G13790.2 50.000 70 33 1 7 76 2 69 1.44e-15 73.6
Msa1153920 AT4G24540.1 48.485 66 34 0 11 76 4 69 1.70e-15 72.4
Msa1153920 AT3G54340.1 30.597 134 71 3 12 142 5 119 1.74e-15 72.8
Msa1153920 AT1G24260.3 30.045 223 125 12 7 202 2 220 1.89e-15 72.8
Msa1153920 AT5G62165.14 46.154 65 35 0 12 76 5 69 2.09e-15 69.7
Msa1153920 AT4G37940.4 45.714 70 36 1 7 76 2 69 2.63e-15 72.0
Msa1153920 AT4G37940.1 45.714 70 36 1 7 76 2 69 2.67e-15 72.0
Msa1153920 AT5G62165.17 46.154 65 35 0 12 76 5 69 2.79e-15 70.5
Msa1153920 AT5G62165.12 46.154 65 35 0 12 76 5 69 2.79e-15 70.5
Msa1153920 AT5G62165.11 46.154 65 35 0 12 76 5 69 2.79e-15 70.5
Msa1153920 AT4G37940.3 45.714 70 36 1 7 76 2 69 2.97e-15 70.9
Msa1153920 AT3G57390.3 47.143 70 35 1 7 76 2 69 3.26e-15 72.0
Msa1153920 AT5G62165.6 46.154 65 35 0 12 76 5 69 3.51e-15 70.1
Msa1153920 AT5G62165.9 46.154 65 35 0 12 76 5 69 3.51e-15 70.1
Msa1153920 AT5G62165.7 46.154 65 35 0 12 76 5 69 3.51e-15 70.1
Msa1153920 AT5G62165.8 46.154 65 35 0 12 76 5 69 3.51e-15 70.1
Msa1153920 AT5G62165.13 46.154 65 35 0 12 76 5 69 3.51e-15 70.1
Msa1153920 AT5G10140.2 47.826 69 35 1 9 76 2 70 4.52e-15 70.1
Msa1153920 AT3G57230.1 44.286 70 37 1 7 76 2 69 4.58e-15 71.6
Msa1153920 AT3G57230.4 44.286 70 37 1 7 76 2 69 4.58e-15 71.6
Msa1153920 AT5G51860.2 49.231 65 33 0 12 76 5 69 5.54e-15 70.9
Msa1153920 AT1G29962.1 41.333 75 44 0 5 79 4 78 6.04e-15 70.5
Msa1153920 AT3G57390.1 47.143 70 35 1 7 76 2 69 6.37e-15 71.6
Msa1153920 AT2G22630.1 39.394 99 49 3 7 105 2 89 6.73e-15 70.9
Msa1153920 AT2G22630.2 39.394 99 49 3 7 105 2 89 6.73e-15 70.9
Msa1153920 AT5G10140.4 47.826 69 35 1 9 76 2 70 6.74e-15 70.1
Msa1153920 AT5G51860.1 49.231 65 33 0 12 76 5 69 7.29e-15 70.5
Msa1153920 AT5G10140.1 47.826 69 35 1 9 76 2 70 8.10e-15 70.1
Msa1153920 AT5G10140.3 47.826 69 35 1 9 76 2 70 8.57e-15 70.1
Msa1153920 AT5G62165.3 46.154 65 35 0 12 76 5 69 1.35e-14 70.1
Msa1153920 AT5G62165.1 46.154 65 35 0 12 76 5 69 1.35e-14 70.1
Msa1153920 AT5G62165.2 46.154 65 35 0 12 76 5 69 1.35e-14 70.1
Msa1153920 AT5G62165.10 46.154 65 35 0 12 76 5 69 1.40e-14 69.7
Msa1153920 AT5G62165.4 46.154 65 35 0 12 76 5 69 1.40e-14 69.7
Msa1153920 AT1G69120.2 45.070 71 36 2 7 76 2 70 2.02e-14 69.7
Msa1153920 AT3G61120.1 47.143 70 35 1 7 76 2 69 2.63e-14 69.7
Msa1153920 AT5G15800.1 36.893 103 58 3 7 104 2 102 2.70e-14 69.7
Msa1153920 AT3G30260.1 43.662 71 37 2 7 76 2 70 2.77e-14 69.7
Msa1153920 AT1G26310.1 45.070 71 36 2 7 76 2 70 2.89e-14 69.7
Msa1153920 AT5G60910.1 45.070 71 36 2 7 76 2 70 3.17e-14 69.3
Msa1153920 AT5G15800.2 36.893 103 58 3 7 104 2 102 3.98e-14 69.3
Msa1153920 AT2G03710.3 27.551 196 120 8 7 190 2 187 4.55e-14 68.2
Msa1153920 AT1G69120.1 45.070 71 36 2 7 76 2 70 5.18e-14 68.9
Msa1153920 AT4G11880.2 45.714 70 37 1 12 80 5 74 6.38e-14 67.4
Msa1153920 AT4G11880.3 45.714 70 37 1 12 80 5 74 6.38e-14 67.4
Msa1153920 AT5G49420.1 33.028 109 66 2 5 106 3 111 7.02e-14 69.3
Msa1153920 AT1G28450.1 40.000 75 45 0 5 79 4 78 9.70e-14 67.0
Msa1153920 AT4G11880.4 45.714 70 37 1 12 80 5 74 1.16e-13 67.4
Msa1153920 AT4G11880.1 45.714 70 37 1 12 80 5 74 1.16e-13 67.4
Msa1153920 AT5G23260.2 49.315 73 33 2 7 77 2 72 1.22e-13 68.2
Msa1153920 AT2G14210.1 43.662 71 37 2 7 76 2 70 1.26e-13 67.8
Msa1153920 AT5G23260.3 49.315 73 33 2 7 77 2 72 1.33e-13 67.8
Msa1153920 AT5G23260.1 49.315 73 33 2 7 77 18 88 1.35e-13 68.2
Msa1153920 AT5G23260.4 49.315 73 33 2 7 77 18 88 1.38e-13 68.2
Msa1153920 AT2G22540.2 46.970 66 30 1 11 76 4 64 1.60e-13 67.4
Msa1153920 AT2G14210.2 43.662 71 37 2 7 76 2 70 1.75e-13 67.4
Msa1153920 AT5G20240.2 45.455 77 36 3 7 79 2 76 1.79e-13 65.5
Msa1153920 AT3G58780.2 49.231 65 31 1 2 66 12 74 1.83e-13 67.4
Msa1153920 AT3G02310.2 35.922 103 59 3 7 104 2 102 2.13e-13 66.6
Msa1153920 AT5G20240.1 45.455 77 36 3 7 79 2 76 2.18e-13 66.6
Msa1153920 AT3G58780.3 49.231 65 31 1 2 66 12 74 2.27e-13 67.4
Msa1153920 AT1G24260.2 28.270 237 125 12 7 202 2 234 2.32e-13 67.4
Msa1153920 AT1G24260.1 28.270 237 124 12 7 202 2 233 2.39e-13 67.0
Msa1153920 AT1G47760.1 40.299 67 40 0 9 75 2 68 2.80e-13 65.9
Msa1153920 AT5G65050.5 25.824 182 108 5 9 163 2 183 3.03e-13 65.9
Msa1153920 AT3G02310.1 35.922 103 59 3 7 104 2 102 3.68e-13 66.6
Msa1153920 AT5G65050.2 44.928 69 37 1 9 76 2 70 4.81e-13 65.1
Msa1153920 AT5G65050.1 44.928 69 37 1 9 76 2 70 6.03e-13 65.1
Msa1153920 AT5G65050.3 44.928 69 37 1 9 76 2 70 6.94e-13 65.1
Msa1153920 AT5G65060.2 26.374 182 107 5 9 163 2 183 9.08e-13 64.3
Msa1153920 AT5G65060.3 44.928 69 37 1 9 76 2 70 1.23e-12 64.3
Msa1153920 AT5G65060.1 44.928 69 37 1 9 76 2 70 1.31e-12 64.3
Msa1153920 AT5G38620.1 33.333 105 61 2 11 106 7 111 2.25e-12 65.1
Msa1153920 AT2G03710.1 50.000 58 27 1 7 64 2 57 2.50e-12 64.3
Msa1153920 AT2G03710.2 50.000 58 27 1 7 64 2 57 2.58e-12 64.3
Msa1153920 AT1G71692.1 41.791 67 38 1 12 77 5 71 3.25e-12 63.5
Msa1153920 AT1G18750.1 32.632 95 61 2 9 101 2 95 5.33e-12 64.3
Msa1153920 AT1G18750.4 32.632 95 61 2 9 101 2 95 5.49e-12 64.3
Msa1153920 AT1G18750.3 32.632 95 61 2 9 101 2 95 5.55e-12 64.3
Msa1153920 AT5G49490.1 32.432 111 66 3 5 106 41 151 8.96e-12 63.2
Msa1153920 AT5G65070.4 39.130 69 41 1 9 76 2 70 1.13e-11 60.8
Msa1153920 AT5G65070.1 39.130 69 41 1 9 76 2 70 2.19e-11 60.8
Msa1153920 AT5G65070.5 39.130 69 41 1 9 76 2 70 3.32e-11 60.8
Msa1153920 AT5G65070.2 39.130 69 41 1 9 76 2 70 3.78e-11 60.8
Msa1153920 AT2G03060.3 33.684 95 60 2 9 101 2 95 6.10e-11 61.2
Msa1153920 AT2G03060.7 33.684 95 60 2 9 101 2 95 6.10e-11 61.2
Msa1153920 AT2G03060.1 33.684 95 60 2 9 101 2 95 6.10e-11 61.2
Msa1153920 AT2G03060.2 33.684 95 60 2 9 101 2 95 6.34e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTATTCAAGAAGATTT+TGG 0.235888 7_4:+41116569 Msa1153920:CDS
ATCTCAGTTTGTTGAGGATT+TGG 0.255732 7_4:-41116714 None:intergenic
ATGTTGCAACCTCATTTAAT+TGG 0.256996 7_4:+41116765 Msa1153920:CDS
TGTTGATAGGAGTGCAATTC+AGG 0.259070 7_4:+41116620 Msa1153920:CDS
TTTAATTGGCTTCAACAATA+TGG 0.267629 7_4:+41116779 Msa1153920:CDS
AAATCATTACCAAGAGAAAA+TGG 0.314064 7_4:-41116663 None:intergenic
AATATGGAAGGAGGAGGATA+TGG 0.330377 7_4:+41116795 Msa1153920:CDS
AGGCGTTCAAGGCTCAATTT+TGG 0.334747 7_4:+41116508 Msa1153920:intron
GCCCTATTCATTCTATCAAT+TGG 0.337270 7_4:-41116540 None:intergenic
GTCATAGATCGCTATCTCTC+TGG 0.357204 7_4:+41116340 Msa1153920:CDS
GTTGAGGATTTGGCTGATAA+TGG 0.382243 7_4:-41116704 None:intergenic
TCCAATTGATAGAATGAATA+GGG 0.395255 7_4:+41116539 Msa1153920:CDS
AATGAGCTTTGCACCCTTTG+TGG 0.404337 7_4:+41116244 Msa1153920:CDS
TTGTTGCTCAACATGTTGAT+AGG 0.407276 7_4:+41116607 Msa1153920:CDS
CTAGAAACTTCAATAGAATC+CGG 0.407513 7_4:-41116823 None:intergenic
ATTAAATGAGGTTGCAACAT+AGG 0.428043 7_4:-41116762 None:intergenic
GTCCAATTGATAGAATGAAT+AGG 0.444780 7_4:+41116538 Msa1153920:CDS
TCTATGACCGTATCAACATT+TGG 0.448129 7_4:-41116325 None:intergenic
ATAATGGAGAGGGATGTTAG+AGG 0.448969 7_4:-41116688 None:intergenic
TTAAATGAGGTTGCAACATA+GGG 0.493554 7_4:-41116761 None:intergenic
AGCAACATCTACACCACAAA+GGG 0.507315 7_4:-41116257 None:intergenic
CGGTCATCCAAATGTTGATA+CGG 0.514501 7_4:+41116318 Msa1153920:CDS
TAGAAACTTCAATAGAATCC+GGG 0.517746 7_4:-41116822 None:intergenic
TGTATTCTCACCTAGTGAAA+AGG 0.518205 7_4:+41116285 Msa1153920:CDS
TCATAGATCGCTATCTCTCT+GGG 0.520984 7_4:+41116341 Msa1153920:CDS
ACCTTTCCTTCCGCTCGACA+TGG 0.533133 7_4:-41116125 None:intergenic
GTTGATAGGAGTGCAATTCA+GGG 0.537321 7_4:+41116621 Msa1153920:CDS
ATTGGCTTCAACAATATGGA+AGG 0.538957 7_4:+41116783 Msa1153920:CDS
ACCATGTCGAGCGGAAGGAA+AGG 0.542544 7_4:+41116124 None:intergenic
GCTTTGAGAAAGTCACTTGG+AGG 0.544594 7_4:-41116195 None:intergenic
GCTCACGCACTTTGGCGCTA+CGG 0.549758 7_4:-41116408 None:intergenic
TTGTTGAAGCCAATTAAATG+AGG 0.551491 7_4:-41116774 None:intergenic
GAAAACATCTCAGTTTGTTG+AGG 0.554882 7_4:-41116720 None:intergenic
CTTCAACCATGTCGAGCGGA+AGG 0.578339 7_4:+41116119 None:intergenic
CTTTCTCAAAGCGTCGTAGT+GGG 0.584950 7_4:+41116206 Msa1153920:CDS
TTCAACAATATGGAAGGAGG+AGG 0.598809 7_4:+41116789 Msa1153920:CDS
ACTTTCTCAAAGCGTCGTAG+TGG 0.602122 7_4:+41116205 Msa1153920:CDS
GTGAGCCTCAATGAATTCCA+TGG 0.607397 7_4:-41116386 None:intergenic
GACGCTTTGAGAAAGTCACT+TGG 0.608413 7_4:-41116198 None:intergenic
AGAAACTTCAATAGAATCCG+GGG 0.619380 7_4:-41116821 None:intergenic
GGATTTGGCTGATAATGGAG+AGG 0.633381 7_4:-41116699 None:intergenic
TCGAGCGGAAGGAAAGGTCG+TGG 0.637409 7_4:+41116130 Msa1153920:CDS
GGCTTCAACAATATGGAAGG+AGG 0.642874 7_4:+41116786 Msa1153920:CDS
TAGCACCATGGAATTCATTG+AGG 0.666363 7_4:+41116381 Msa1153920:CDS
GAGCAACATCTACACCACAA+AGG 0.666690 7_4:-41116258 None:intergenic
GAAACTTCAATAGAATCCGG+GGG 0.679421 7_4:-41116820 None:intergenic
GATTTGGCTGATAATGGAGA+GGG 0.685158 7_4:-41116698 None:intergenic
TGTACTTCAACCATGTCGAG+CGG 0.700229 7_4:+41116115 None:intergenic
ACCGCAAAACAATAGCACCA+TGG 0.712731 7_4:+41116369 Msa1153920:CDS
AAACTTCAATAGAATCCGGG+GGG 0.771286 7_4:-41116819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTATTCAAGAAGATTT+TGG + chr7_4:41116569-41116588 Msa1153920:CDS 20.0%
!! AAAGAAAATACCTTTTCACT+AGG - chr7_4:41116298-41116317 None:intergenic 25.0%
!!! AGTGAAAAGGTATTTTCTTT+CGG + chr7_4:41116298-41116317 Msa1153920:CDS 25.0%
! TCCAATTGATAGAATGAATA+GGG + chr7_4:41116539-41116558 Msa1153920:CDS 25.0%
!! ATTATTCAAGAAGATTTTGG+TGG + chr7_4:41116572-41116591 Msa1153920:CDS 25.0%
! AAATCATTACCAAGAGAAAA+TGG - chr7_4:41116666-41116685 None:intergenic 25.0%
! ATAGGGTTATGAAAAATTTG+TGG - chr7_4:41116747-41116766 None:intergenic 25.0%
!! TTTAATTGGCTTCAACAATA+TGG + chr7_4:41116779-41116798 Msa1153920:CDS 25.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr7_4:41116159-41116178 None:intergenic 30.0%
GTCCAATTGATAGAATGAAT+AGG + chr7_4:41116538-41116557 Msa1153920:CDS 30.0%
TTAAATGAGGTTGCAACATA+GGG - chr7_4:41116764-41116783 None:intergenic 30.0%
ATTAAATGAGGTTGCAACAT+AGG - chr7_4:41116765-41116784 None:intergenic 30.0%
ATGTTGCAACCTCATTTAAT+TGG + chr7_4:41116765-41116784 Msa1153920:CDS 30.0%
TTGTTGAAGCCAATTAAATG+AGG - chr7_4:41116777-41116796 None:intergenic 30.0%
TGTATTCTCACCTAGTGAAA+AGG + chr7_4:41116285-41116304 Msa1153920:CDS 35.0%
TCTATGACCGTATCAACATT+TGG - chr7_4:41116328-41116347 None:intergenic 35.0%
GTTTCAAATCAACAACACAC+TGG + chr7_4:41116444-41116463 Msa1153920:intron 35.0%
GCCCTATTCATTCTATCAAT+TGG - chr7_4:41116543-41116562 None:intergenic 35.0%
TTGTTGCTCAACATGTTGAT+AGG + chr7_4:41116607-41116626 Msa1153920:CDS 35.0%
! CACACTTTTCCATTTTCTCT+TGG + chr7_4:41116654-41116673 Msa1153920:CDS 35.0%
!! ATCTCAGTTTGTTGAGGATT+TGG - chr7_4:41116717-41116736 None:intergenic 35.0%
!! GAAAACATCTCAGTTTGTTG+AGG - chr7_4:41116723-41116742 None:intergenic 35.0%
! ATTGGCTTCAACAATATGGA+AGG + chr7_4:41116783-41116802 Msa1153920:CDS 35.0%
AGCAACATCTACACCACAAA+GGG - chr7_4:41116260-41116279 None:intergenic 40.0%
CGGTCATCCAAATGTTGATA+CGG + chr7_4:41116318-41116337 Msa1153920:CDS 40.0%
TCATAGATCGCTATCTCTCT+GGG + chr7_4:41116341-41116360 Msa1153920:CDS 40.0%
!!! TCCATGGTGCTATTGTTTTG+CGG - chr7_4:41116373-41116392 None:intergenic 40.0%
TAGCACCATGGAATTCATTG+AGG + chr7_4:41116381-41116400 Msa1153920:CDS 40.0%
!! GTTCAAGGCTCAATTTTGGT+GGG + chr7_4:41116512-41116531 Msa1153920:CDS 40.0%
! TGTTGATAGGAGTGCAATTC+AGG + chr7_4:41116620-41116639 Msa1153920:CDS 40.0%
! GTTGATAGGAGTGCAATTCA+GGG + chr7_4:41116621-41116640 Msa1153920:CDS 40.0%
! ATAATGGAGAGGGATGTTAG+AGG - chr7_4:41116691-41116710 None:intergenic 40.0%
!! GATTTGGCTGATAATGGAGA+GGG - chr7_4:41116701-41116720 None:intergenic 40.0%
GTTGAGGATTTGGCTGATAA+TGG - chr7_4:41116707-41116726 None:intergenic 40.0%
TTCAACAATATGGAAGGAGG+AGG + chr7_4:41116789-41116808 Msa1153920:CDS 40.0%
AATATGGAAGGAGGAGGATA+TGG + chr7_4:41116795-41116814 Msa1153920:CDS 40.0%
!! GCTTTGAGAAAGTCACTTGG+AGG - chr7_4:41116198-41116217 None:intergenic 45.0%
!! GACGCTTTGAGAAAGTCACT+TGG - chr7_4:41116201-41116220 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+TGG + chr7_4:41116205-41116224 Msa1153920:CDS 45.0%
!! CTTTCTCAAAGCGTCGTAGT+GGG + chr7_4:41116206-41116225 Msa1153920:CDS 45.0%
AATGAGCTTTGCACCCTTTG+TGG + chr7_4:41116244-41116263 Msa1153920:CDS 45.0%
GAGCAACATCTACACCACAA+AGG - chr7_4:41116261-41116280 None:intergenic 45.0%
GTCATAGATCGCTATCTCTC+TGG + chr7_4:41116340-41116359 Msa1153920:CDS 45.0%
!!! TGGTGCTATTGTTTTGCGGT+GGG - chr7_4:41116369-41116388 None:intergenic 45.0%
!!! ATGGTGCTATTGTTTTGCGG+TGG - chr7_4:41116370-41116389 None:intergenic 45.0%
ACCGCAAAACAATAGCACCA+TGG + chr7_4:41116369-41116388 Msa1153920:CDS 45.0%
GTGAGCCTCAATGAATTCCA+TGG - chr7_4:41116389-41116408 None:intergenic 45.0%
AATCAACAACACACTGGACG+AGG + chr7_4:41116450-41116469 Msa1153920:intron 45.0%
!! TGAGTTGAGCCTTTTGTGCA+AGG + chr7_4:41116488-41116507 Msa1153920:intron 45.0%
! AGGCGTTCAAGGCTCAATTT+TGG + chr7_4:41116508-41116527 Msa1153920:intron 45.0%
! CGTTCAAGGCTCAATTTTGG+TGG + chr7_4:41116511-41116530 Msa1153920:CDS 45.0%
!! GGATTTGGCTGATAATGGAG+AGG - chr7_4:41116702-41116721 None:intergenic 45.0%
GGCTTCAACAATATGGAAGG+AGG + chr7_4:41116786-41116805 Msa1153920:CDS 45.0%
! AGCATTGAGCTCACGCACTT+TGG - chr7_4:41116419-41116438 None:intergenic 50.0%
ACTGGACGAGGAGAAAAGTG+TGG + chr7_4:41116462-41116481 Msa1153920:intron 50.0%
CCTTGAACGCCTTGCACAAA+AGG - chr7_4:41116500-41116519 None:intergenic 50.0%
!! CCTTTTGTGCAAGGCGTTCA+AGG + chr7_4:41116497-41116516 Msa1153920:intron 50.0%
TCGAGCGGAAGGAAAGGTCG+TGG + chr7_4:41116130-41116149 Msa1153920:CDS 60.0%
GCTCACGCACTTTGGCGCTA+CGG - chr7_4:41116411-41116430 None:intergenic 60.0%
GGAGGAGGATATGGACCCCC+CGG + chr7_4:41116804-41116823 Msa1153920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41116127 41116836 41116127 ID=Msa1153920;Name=Msa1153920
chr7_4 mRNA 41116127 41116836 41116127 ID=Msa1153920-mRNA-1;Parent=Msa1153920;Name=Msa1153920-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|206
chr7_4 exon 41116127 41116420 41116127 ID=Msa1153920-mRNA-1:exon:9941;Parent=Msa1153920-mRNA-1
chr7_4 exon 41116510 41116836 41116510 ID=Msa1153920-mRNA-1:exon:9942;Parent=Msa1153920-mRNA-1
chr7_4 CDS 41116127 41116420 41116127 ID=Msa1153920-mRNA-1:cds;Parent=Msa1153920-mRNA-1
chr7_4 CDS 41116510 41116836 41116510 ID=Msa1153920-mRNA-1:cds;Parent=Msa1153920-mRNA-1
Gene Sequence

>Msa1153920

ATGTCGAGCGGAAGGAAAGGTCGTGGTAGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTCCAAGTGACTTTCTCAAAGCGTCGTAGTGGGCTCTTCAAGAAAGTCAATGAGCTTTGCACCCTTTGTGGTGTAGATGTTGCTCTCGTTGTATTCTCACCTAGTGAAAAGGTATTTTCTTTCGGTCATCCAAATGTTGATACGGTCATAGATCGCTATCTCTCTGGGATCCCACCGCAAAACAATAGCACCATGGAATTCATTGAGGCTCACCGTAGCGCCAAAGCGTTCAAGGCTCAATTTTGGTGGGCTTGTCCAATTGATAGAATGAATAGGGCTCAGCTTGAATTATTCAAGAAGATTTTGGTGGAGCTTAAGAAACTTGTTGCTCAACATGTTGATAGGAGTGCAATTCAGGGTGCTTCTGCTCACACTTTTCCATTTTCTCTTGGTAATGATTTATCCTCTAACATCCCTCTCCATTATCAGCCAAATCCTCAACAAACTGAGATGTTTTCGCCACAAATTTTTCATAACCCTATGTTGCAACCTCATTTAATTGGCTTCAACAATATGGAAGGAGGAGGATATGGACCCCCCGGATTCTATTGA
Protein sequence

>Msa1153920

MSSGRKGRGSQKIEMKKMSNESNLQVTFSKRRSGLFKKVNELCTLCGVDVALVVFSPSEKVFSFGHPNVDTVIDRYLSGIPPQNNSTMEFIEAHRSAKAFKAQFWWACPIDRMNRAQLELFKKILVELKKLVAQHVDRSAIQGASAHTFPFSLGNDLSSNIPLHYQPNPQQTEMFSPQIFHNPMLQPHLIGFNNMEGGGYGPPGFY*