Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154010 | AES79839.1 | 94.783 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154010 | sp|Q5CCK4|VAL2_ARATH | 44.353 | 363 | 153 | 8 | 24 | 342 | 203 | 560 | 2.95e-87 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154010 | G7KY51 | 94.783 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1154010 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154010 | MtrunA17_Chr4g0012861 | 45.060 | 415 | 152 | 8 | 1 | 342 | 213 | 624 | 1.41e-102 | 321 |
| Msa1154010 | MtrunA17_Chr2g0281191 | 44.262 | 305 | 134 | 4 | 73 | 341 | 320 | 624 | 5.69e-77 | 253 |
| Msa1154010 | MtrunA17_Chr7g0244881 | 93.814 | 97 | 6 | 0 | 1 | 97 | 17 | 113 | 3.11e-61 | 191 |
| Msa1154010 | MtrunA17_Chr7g0244871 | 94.681 | 94 | 5 | 0 | 97 | 190 | 4 | 97 | 1.29e-60 | 189 |
| Msa1154010 | MtrunA17_Chr3g0107701 | 49.767 | 215 | 97 | 7 | 1 | 209 | 233 | 442 | 5.05e-56 | 196 |
| Msa1154010 | MtrunA17_Chr3g0107701 | 51.969 | 127 | 48 | 2 | 229 | 342 | 522 | 648 | 9.36e-33 | 129 |
| Msa1154010 | MtrunA17_Chr5g0432721 | 50.270 | 185 | 87 | 3 | 36 | 219 | 254 | 434 | 6.85e-53 | 186 |
| Msa1154010 | MtrunA17_Chr5g0432721 | 56.944 | 72 | 30 | 1 | 231 | 301 | 507 | 578 | 1.34e-17 | 84.0 |
| Msa1154010 | MtrunA17_Chr7g0251891 | 38.835 | 103 | 62 | 1 | 105 | 206 | 16 | 118 | 5.49e-18 | 81.3 |
| Msa1154010 | MtrunA17_Chr7g0237841 | 39.216 | 102 | 60 | 2 | 105 | 204 | 623 | 724 | 1.41e-16 | 80.9 |
| Msa1154010 | MtrunA17_Chr1g0178071 | 38.298 | 141 | 65 | 7 | 82 | 208 | 50 | 182 | 1.61e-16 | 79.3 |
| Msa1154010 | MtrunA17_Chr8g0345771 | 40.000 | 110 | 56 | 5 | 105 | 207 | 171 | 277 | 2.02e-14 | 73.9 |
| Msa1154010 | MtrunA17_Chr7g0266821 | 41.905 | 105 | 54 | 5 | 110 | 210 | 65 | 166 | 4.15e-14 | 72.0 |
| Msa1154010 | MtrunA17_Chr7g0276471 | 40.659 | 91 | 49 | 3 | 105 | 192 | 117 | 205 | 1.75e-13 | 71.2 |
| Msa1154010 | MtrunA17_Chr1g0198661 | 34.641 | 153 | 69 | 7 | 92 | 215 | 168 | 318 | 9.42e-13 | 68.6 |
| Msa1154010 | MtrunA17_Chr5g0422501 | 38.393 | 112 | 55 | 5 | 105 | 204 | 235 | 344 | 1.32e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154010 | AT4G32010.2 | 44.847 | 359 | 153 | 7 | 24 | 342 | 203 | 556 | 3.71e-90 | 286 |
| Msa1154010 | AT4G32010.1 | 44.353 | 363 | 153 | 8 | 24 | 342 | 203 | 560 | 3.00e-88 | 281 |
| Msa1154010 | AT2G30470.1 | 45.511 | 323 | 122 | 5 | 73 | 342 | 262 | 583 | 1.15e-80 | 261 |
| Msa1154010 | AT4G21550.3 | 39.209 | 278 | 148 | 7 | 38 | 299 | 254 | 526 | 2.79e-50 | 176 |
| Msa1154010 | AT4G21550.1 | 40.357 | 280 | 146 | 7 | 38 | 301 | 254 | 528 | 6.09e-45 | 164 |
| Msa1154010 | AT4G21550.2 | 38.258 | 264 | 142 | 7 | 38 | 285 | 254 | 512 | 2.13e-44 | 160 |
| Msa1154010 | AT3G26790.1 | 40.385 | 104 | 61 | 1 | 105 | 207 | 91 | 194 | 3.26e-18 | 84.3 |
| Msa1154010 | AT3G24650.1 | 38.211 | 123 | 74 | 2 | 105 | 225 | 571 | 693 | 1.44e-17 | 84.3 |
| Msa1154010 | AT1G28300.1 | 39.669 | 121 | 69 | 3 | 72 | 189 | 136 | 255 | 1.46e-17 | 83.2 |
| Msa1154010 | AT5G06250.4 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 9.55e-17 | 79.7 |
| Msa1154010 | AT5G06250.2 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.08e-16 | 79.7 |
| Msa1154010 | AT5G06250.5 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.15e-16 | 79.3 |
| Msa1154010 | AT5G06250.3 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.22e-16 | 79.3 |
| Msa1154010 | AT5G06250.1 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.51e-16 | 79.0 |
| Msa1154010 | AT1G13260.1 | 38.983 | 118 | 65 | 5 | 104 | 216 | 186 | 301 | 5.03e-16 | 78.6 |
| Msa1154010 | AT3G25730.1 | 37.815 | 119 | 65 | 5 | 105 | 216 | 182 | 298 | 1.34e-15 | 77.0 |
| Msa1154010 | AT2G36080.3 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.29e-15 | 74.3 |
| Msa1154010 | AT2G36080.4 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.44e-15 | 73.2 |
| Msa1154010 | AT2G36080.2 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.44e-15 | 73.2 |
| Msa1154010 | AT2G36080.1 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.84e-15 | 74.3 |
| Msa1154010 | AT1G68840.2 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.79e-14 | 73.6 |
| Msa1154010 | AT1G68840.1 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.79e-14 | 73.6 |
| Msa1154010 | AT3G11580.4 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.18e-14 | 71.2 |
| Msa1154010 | AT3G11580.2 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.18e-14 | 71.2 |
| Msa1154010 | AT3G11580.5 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.18e-14 | 71.2 |
| Msa1154010 | AT3G11580.1 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 7.69e-14 | 71.2 |
| Msa1154010 | AT2G46870.1 | 38.889 | 108 | 57 | 5 | 105 | 205 | 34 | 139 | 9.50e-14 | 71.6 |
| Msa1154010 | AT1G01030.2 | 33.588 | 131 | 72 | 5 | 105 | 222 | 55 | 183 | 7.85e-13 | 68.9 |
| Msa1154010 | AT3G11580.3 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 1.02e-12 | 68.9 |
| Msa1154010 | AT3G61970.1 | 37.037 | 108 | 59 | 4 | 105 | 205 | 22 | 127 | 1.59e-12 | 67.8 |
| Msa1154010 | AT4G01500.1 | 35.714 | 126 | 65 | 5 | 77 | 192 | 2 | 121 | 1.80e-12 | 67.8 |
| Msa1154010 | AT1G25560.1 | 37.931 | 116 | 58 | 5 | 105 | 208 | 194 | 307 | 2.35e-12 | 67.8 |
| Msa1154010 | AT1G01030.1 | 37.288 | 118 | 64 | 5 | 105 | 214 | 55 | 170 | 2.61e-12 | 67.4 |
Find 76 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATCTGTGGAGAATTTA+TGG | 0.154338 | 7_4:-41282353 | Msa1154010:CDS |
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | 7_4:-41283872 | Msa1154010:intron |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | 7_4:+41283932 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | 7_4:-41283955 | Msa1154010:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | 7_4:+41284143 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | 7_4:+41284575 | None:intergenic |
| AAGAAGGGTATATTCATAAA+TGG | 0.214466 | 7_4:-41282785 | Msa1154010:CDS |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | 7_4:-41284782 | Msa1154010:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | 7_4:+41284704 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | 7_4:+41284533 | None:intergenic |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | 7_4:+41284778 | None:intergenic |
| CATTGATGCTGGAACTTACT+TGG | 0.314019 | 7_4:-41283244 | Msa1154010:CDS |
| CAAGAATTACAACAATTATC+TGG | 0.358413 | 7_4:-41284518 | Msa1154010:CDS |
| ATATCACTGTCTTCAATTCA+TGG | 0.371160 | 7_4:+41282211 | None:intergenic |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | 7_4:+41284602 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | 7_4:-41284764 | Msa1154010:CDS |
| ATACCCTTCTTTGCAATGAT+AGG | 0.386942 | 7_4:+41282797 | None:intergenic |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | 7_4:+41284652 | None:intergenic |
| TTCAAACATTGTGGTGATTG+AGG | 0.415224 | 7_4:-41283180 | Msa1154010:CDS |
| GGGATCTGTGGAGAATTTAT+GGG | 0.418012 | 7_4:-41282352 | Msa1154010:CDS |
| TGCTCAGAATGGAGAAAGTT+GGG | 0.421979 | 7_4:-41282372 | Msa1154010:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | 7_4:+41284683 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | 7_4:-41283975 | Msa1154010:CDS |
| AAATTGCAGTAACATTTAAC+CGG | 0.439905 | 7_4:-41283705 | Msa1154010:intron |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | 7_4:-41284761 | Msa1154010:CDS |
| AGAAGGGTATATTCATAAAT+GGG | 0.456876 | 7_4:-41282784 | Msa1154010:intron |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.457967 | 7_4:-41282373 | Msa1154010:CDS |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | 7_4:-41283985 | Msa1154010:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | 7_4:+41284203 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.470824 | 7_4:-41283377 | Msa1154010:CDS |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | 7_4:+41284767 | None:intergenic |
| ATGTTTGAATTAACCGTTGG+AGG | 0.488113 | 7_4:+41283194 | None:intergenic |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | 7_4:-41284179 | Msa1154010:CDS |
| ACCTCCTATCATTGCAAAGA+AGG | 0.496773 | 7_4:-41282801 | Msa1154010:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.497014 | 7_4:+41282800 | None:intergenic |
| AACTGATAATAGGGTTTCGA+AGG | 0.500618 | 7_4:-41283666 | Msa1154010:CDS |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | 7_4:-41284171 | Msa1154010:CDS |
| GGCATCGGCTTCTTCTATAC+AGG | 0.506593 | 7_4:-41283644 | Msa1154010:intron |
| CCTATTATCAGTTTCTCCCC+CGG | 0.509156 | 7_4:+41283676 | None:intergenic |
| TTTCCACCTATTTCGGAACC+AGG | 0.514336 | 7_4:-41284019 | Msa1154010:CDS |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | 7_4:-41283695 | Msa1154010:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | 7_4:-41283937 | Msa1154010:CDS |
| TGCAGTAACATTTAACCGGA+TGG | 0.519252 | 7_4:-41283701 | Msa1154010:intron |
| TATCACTGTCTTCAATTCAT+GGG | 0.523152 | 7_4:+41282212 | None:intergenic |
| ATTGATGCTGGAACTTACTT+GGG | 0.528064 | 7_4:-41283243 | Msa1154010:CDS |
| ATGGAGAAAGTTGGGATCTG+TGG | 0.531161 | 7_4:-41282364 | Msa1154010:CDS |
| AATAGGGTTTCGAAGGGCAT+CGG | 0.532282 | 7_4:-41283659 | Msa1154010:CDS |
| ACAATGTTTGAATTAACCGT+TGG | 0.533836 | 7_4:+41283191 | None:intergenic |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | 7_4:-41283881 | Msa1154010:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.538634 | 7_4:+41284523 | None:intergenic |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | 7_4:-41284188 | Msa1154010:CDS |
| TTCCACCTATTTCGGAACCA+GGG | 0.543683 | 7_4:-41284018 | Msa1154010:CDS |
| TAACAAAGAAGCATTGATGC+TGG | 0.545646 | 7_4:-41283255 | Msa1154010:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | 7_4:-41282341 | Msa1154010:intron |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | 7_4:-41283694 | Msa1154010:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | 7_4:-41283986 | Msa1154010:CDS |
| TTTGAATTAACCGTTGGAGG+TGG | 0.560511 | 7_4:+41283197 | None:intergenic |
| AACGGTTAATTCAAACATTG+TGG | 0.562770 | 7_4:-41283189 | Msa1154010:CDS |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | 7_4:-41284711 | Msa1154010:CDS |
| CCTCCTATCATTGCAAAGAA+GGG | 0.572822 | 7_4:-41282800 | Msa1154010:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | 7_4:-41284710 | Msa1154010:CDS |
| TTAGGAACTACTAGCTCTTG+TGG | 0.580404 | 7_4:+41283329 | None:intergenic |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | 7_4:-41284758 | Msa1154010:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | 7_4:-41284604 | Msa1154010:CDS |
| ACAACAGGGTGAACGAGCAA+TGG | 0.589015 | 7_4:-41282410 | Msa1154010:intron |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | 7_4:+41284214 | None:intergenic |
| TCCACCTATTTCGGAACCAG+GGG | 0.606854 | 7_4:-41284017 | Msa1154010:CDS |
| AGTGTGATAAGTGCTCAGAA+TGG | 0.614321 | 7_4:-41282383 | Msa1154010:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | 7_4:-41283693 | Msa1154010:CDS |
| GGATCTGTGGAGAATTTATG+GGG | 0.621372 | 7_4:-41282351 | Msa1154010:CDS |
| ACTGATAATAGGGTTTCGAA+GGG | 0.642961 | 7_4:-41283665 | Msa1154010:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | 7_4:+41284653 | None:intergenic |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | 7_4:-41284580 | Msa1154010:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | 7_4:+41284211 | None:intergenic |
| CCACCTATTTCGGAACCAGG+GGG | 0.686812 | 7_4:-41284016 | Msa1154010:CDS |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | 7_4:-41283692 | Msa1154010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATATAAAATAAAATG+AGG | + | chr7_4:41282688-41282707 | None:intergenic | 10.0% |
| !! | ATTTACATAAATACAAAAAT+AGG | + | chr7_4:41283591-41283610 | None:intergenic | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | - | chr7_4:41283906-41283925 | Msa1154010:CDS | 10.0% |
| !!! | ATTTTTTAAAGATGTTTTAT+CGG | - | chr7_4:41284143-41284162 | Msa1154010:intron | 10.0% |
| !!! | AAACGATAAATTTTTTTATA+GGG | + | chr7_4:41284338-41284357 | None:intergenic | 10.0% |
| !!! | AAAACGATAAATTTTTTTAT+AGG | + | chr7_4:41284339-41284358 | None:intergenic | 10.0% |
| !!! | TTTACTAAACTTTTCATTAT+AGG | - | chr7_4:41282524-41282543 | Msa1154010:intron | 15.0% |
| !! | AAAGATTTATCATCAAATAT+TGG | + | chr7_4:41282921-41282940 | None:intergenic | 15.0% |
| !!! | GTCATAAAGAAAATATATTT+TGG | + | chr7_4:41284544-41284563 | None:intergenic | 15.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | + | chr7_4:41282485-41282504 | None:intergenic | 20.0% |
| !! | TGAAAAGTTTAGTAAAGTAA+TGG | + | chr7_4:41282520-41282539 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | + | chr7_4:41282614-41282633 | None:intergenic | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | - | chr7_4:41283050-41283069 | Msa1154010:intron | 20.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | + | chr7_4:41283209-41283228 | None:intergenic | 20.0% |
| !!! | ACTGCAATTTTTTTTGTAAA+AGG | + | chr7_4:41283290-41283309 | None:intergenic | 20.0% |
| !! | TTCATCAAAATAAACTTTAG+AGG | - | chr7_4:41283956-41283975 | Msa1154010:CDS | 20.0% |
| !!! | TAAACTTTAGAGGAATAATA+TGG | - | chr7_4:41283966-41283985 | Msa1154010:CDS | 20.0% |
| !!! | CAAAAGTTCATAATTTTGTA+AGG | + | chr7_4:41284307-41284326 | None:intergenic | 20.0% |
| !!! | TTGTTATTTTAAATATGTCG+AGG | + | chr7_4:41284367-41284386 | None:intergenic | 20.0% |
| !!! | TCGACATATTTAAAATAACA+AGG | - | chr7_4:41284366-41284385 | Msa1154010:intron | 20.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | + | chr7_4:41282230-41282249 | None:intergenic | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | + | chr7_4:41282241-41282260 | None:intergenic | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | - | chr7_4:41282241-41282260 | Msa1154010:intron | 25.0% |
| ! | CAAGAATTACAACAATTATC+TGG | - | chr7_4:41282487-41282506 | Msa1154010:intron | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | + | chr7_4:41282769-41282788 | None:intergenic | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | - | chr7_4:41282944-41282963 | Msa1154010:intron | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | - | chr7_4:41283230-41283249 | Msa1154010:CDS | 25.0% |
| ! | AAATTGCAGTAACATTTAAC+CGG | - | chr7_4:41283300-41283319 | Msa1154010:CDS | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | - | chr7_4:41283628-41283647 | Msa1154010:intron | 25.0% |
| ! | TAGTCCTCAAAGATATAATA+TGG | + | chr7_4:41283935-41283954 | None:intergenic | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | - | chr7_4:41283985-41284004 | Msa1154010:CDS | 25.0% |
| !! | TAAAATTGAAGCACTCAATA+TGG | + | chr7_4:41284116-41284135 | None:intergenic | 25.0% |
| !! | AAGAAGGGTATATTCATAAA+TGG | - | chr7_4:41284220-41284239 | Msa1154010:CDS | 25.0% |
| !! | AGAAGGGTATATTCATAAAT+GGG | - | chr7_4:41284221-41284240 | Msa1154010:CDS | 25.0% |
| !! | AAACACCTTTTATAAGATCA+GGG | + | chr7_4:41284420-41284439 | None:intergenic | 25.0% |
| !! | AAAACACCTTTTATAAGATC+AGG | + | chr7_4:41284421-41284440 | None:intergenic | 25.0% |
| !!! | GTTAACAAATCTTGTTTTCA+AGG | - | chr7_4:41284726-41284745 | Msa1154010:CDS | 25.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | - | chr7_4:41282223-41282242 | Msa1154010:CDS | 30.0% |
| AATTCTTGATCGGTAATCTT+AGG | + | chr7_4:41282475-41282494 | None:intergenic | 30.0% | |
| ! | TAGGTCAAATGTTTTATGCT+AGG | - | chr7_4:41282543-41282562 | Msa1154010:intron | 30.0% |
| GTTTGTATGATTAGTACTCT+TGG | - | chr7_4:41282720-41282739 | Msa1154010:intron | 30.0% | |
| ! | CTTTAACACATCATTGGTTA+TGG | + | chr7_4:41282763-41282782 | None:intergenic | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | + | chr7_4:41282865-41282884 | None:intergenic | 30.0% |
| ! | GACATATTTTCCACCTATTT+CGG | - | chr7_4:41282979-41282998 | Msa1154010:intron | 30.0% |
| ATTTGTAAATAAATACCCCC+TGG | + | chr7_4:41283007-41283026 | None:intergenic | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | + | chr7_4:41283076-41283095 | None:intergenic | 30.0% | |
| !! | AGCAGGATATATGTTTTAGA+AGG | - | chr7_4:41283085-41283104 | Msa1154010:intron | 30.0% |
| ! | AATTGCTATTGAACTATGAG+TGG | + | chr7_4:41283172-41283191 | None:intergenic | 30.0% |
| TGTGTAAGATTGCAAAAATG+TGG | - | chr7_4:41283417-41283436 | Msa1154010:intron | 30.0% | |
| ! | ATTCTGCTATGTGTTATTAG+AGG | - | chr7_4:41283472-41283491 | Msa1154010:intron | 30.0% |
| CATATGTCTAAGTTGTTCTA+TGG | - | chr7_4:41283545-41283564 | Msa1154010:intron | 30.0% | |
| ! | TCACATGTTCTTTTCTTCTT+AGG | + | chr7_4:41283697-41283716 | None:intergenic | 30.0% |
| ACAATGTTTGAATTAACCGT+TGG | + | chr7_4:41283817-41283836 | None:intergenic | 30.0% | |
| AACGGTTAATTCAAACATTG+TGG | - | chr7_4:41283816-41283835 | Msa1154010:intron | 30.0% | |
| GTGACCATATTATATCTTTG+AGG | - | chr7_4:41283928-41283947 | Msa1154010:CDS | 30.0% | |
| ! | TTTTGAGCAAACATTCAATG+TGG | + | chr7_4:41284072-41284091 | None:intergenic | 30.0% |
| GAATGTTTGCTCAAAATCTA+TGG | - | chr7_4:41284076-41284095 | Msa1154010:intron | 30.0% | |
| GACTATACTAAAATTGTTGC+AGG | - | chr7_4:41284180-41284199 | Msa1154010:CDS | 30.0% | |
| !! | ATTAGTAGTTTAGCTTGACA+TGG | + | chr7_4:41284514-41284533 | None:intergenic | 30.0% |
| GGAAATTCAAATTCCTTTGG+TGG | - | chr7_4:41282244-41282263 | Msa1154010:intron | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | - | chr7_4:41282247-41282266 | Msa1154010:intron | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | - | chr7_4:41282294-41282313 | Msa1154010:intron | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | - | chr7_4:41282295-41282314 | Msa1154010:intron | 35.0% | |
| !! | TGCAAAAGATTCTGAGACTT+AGG | + | chr7_4:41282325-41282344 | None:intergenic | 35.0% |
| ! | TCAATAGCAAGAGTTGACTT+GGG | + | chr7_4:41282355-41282374 | None:intergenic | 35.0% |
| GTTAATGTCTTCTCGAATAG+TGG | + | chr7_4:41282805-41282824 | None:intergenic | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | - | chr7_4:41282817-41282836 | Msa1154010:intron | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | - | chr7_4:41283019-41283038 | Msa1154010:intron | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | - | chr7_4:41283020-41283039 | Msa1154010:intron | 35.0% | |
| !! | TTTTAGAAGGAGTACATGCT+TGG | - | chr7_4:41283098-41283117 | Msa1154010:intron | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | - | chr7_4:41283133-41283152 | Msa1154010:intron | 35.0% |
| AACTGATAATAGGGTTTCGA+AGG | - | chr7_4:41283339-41283358 | Msa1154010:CDS | 35.0% | |
| ACTGATAATAGGGTTTCGAA+GGG | - | chr7_4:41283340-41283359 | Msa1154010:CDS | 35.0% | |
| ATGTAAATTTCTTTCCCACC+AGG | - | chr7_4:41283603-41283622 | Msa1154010:intron | 35.0% | |
| ACATAGCAATGTTATTCACC+TGG | + | chr7_4:41283624-41283643 | None:intergenic | 35.0% | |
| !! | TAACAAAGAAGCATTGATGC+TGG | - | chr7_4:41283750-41283769 | Msa1154010:intron | 35.0% |
| ATTGATGCTGGAACTTACTT+GGG | - | chr7_4:41283762-41283781 | Msa1154010:intron | 35.0% | |
| ATGTTTGAATTAACCGTTGG+AGG | + | chr7_4:41283814-41283833 | None:intergenic | 35.0% | |
| TTCAAACATTGTGGTGATTG+AGG | - | chr7_4:41283825-41283844 | Msa1154010:intron | 35.0% | |
| TGTGACAATGCTCTAATCAT+TGG | - | chr7_4:41284042-41284061 | Msa1154010:intron | 35.0% | |
| TGTTTGCTCAAAATCTATGG+AGG | - | chr7_4:41284079-41284098 | Msa1154010:intron | 35.0% | |
| ATACCCTTCTTTGCAATGAT+AGG | + | chr7_4:41284211-41284230 | None:intergenic | 35.0% | |
| TTGCATTGTGATTGAACAAC+AGG | - | chr7_4:41284580-41284599 | Msa1154010:CDS | 35.0% | |
| TGCATTGTGATTGAACAACA+GGG | - | chr7_4:41284581-41284600 | Msa1154010:CDS | 35.0% | |
| AGAATTTATGGGGTCAAAGA+AGG | - | chr7_4:41284664-41284683 | Msa1154010:CDS | 35.0% | |
| CTCAATAGCAAGAGTTGACT+TGG | + | chr7_4:41282356-41282375 | None:intergenic | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | - | chr7_4:41282375-41282394 | Msa1154010:CDS | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | + | chr7_4:41282406-41282425 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | + | chr7_4:41282433-41282452 | None:intergenic | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | - | chr7_4:41283030-41283049 | Msa1154010:intron | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | - | chr7_4:41283068-41283087 | Msa1154010:intron | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | - | chr7_4:41283124-41283143 | Msa1154010:intron | 40.0% | |
| TGTCATGTAGGCTCAAACTA+TGG | - | chr7_4:41283242-41283261 | Msa1154010:CDS | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | - | chr7_4:41283304-41283323 | Msa1154010:CDS | 40.0% | |
| AGCAATGTTATTCACCTGGT+GGG | + | chr7_4:41283620-41283639 | None:intergenic | 40.0% | |
| TAGCAATGTTATTCACCTGG+TGG | + | chr7_4:41283621-41283640 | None:intergenic | 40.0% | |
| ! | TTAGGAACTACTAGCTCTTG+TGG | + | chr7_4:41283679-41283698 | None:intergenic | 40.0% |
| CATTGATGCTGGAACTTACT+TGG | - | chr7_4:41283761-41283780 | Msa1154010:intron | 40.0% | |
| ! | TTTTCTTCATCCACCTCCAA+CGG | - | chr7_4:41283798-41283817 | Msa1154010:intron | 40.0% |
| TTTGAATTAACCGTTGGAGG+TGG | + | chr7_4:41283811-41283830 | None:intergenic | 40.0% | |
| GACAATGCTCTAATCATTGG+AGG | - | chr7_4:41284045-41284064 | Msa1154010:intron | 40.0% | |
| ACCTCCTATCATTGCAAAGA+AGG | - | chr7_4:41284204-41284223 | Msa1154010:CDS | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | - | chr7_4:41284205-41284224 | Msa1154010:CDS | 40.0% | |
| TGTCTCACAGTAGGAACTAT+AGG | + | chr7_4:41284394-41284413 | None:intergenic | 40.0% | |
| CAGCACCCTGATCTTATAAA+AGG | - | chr7_4:41284412-41284431 | Msa1154010:intron | 40.0% | |
| AGTGTGATAAGTGCTCAGAA+TGG | - | chr7_4:41284622-41284641 | Msa1154010:CDS | 40.0% | |
| TGCTCAGAATGGAGAAAGTT+GGG | - | chr7_4:41284633-41284652 | Msa1154010:CDS | 40.0% | |
| TGGGATCTGTGGAGAATTTA+TGG | - | chr7_4:41284652-41284671 | Msa1154010:CDS | 40.0% | |
| GGGATCTGTGGAGAATTTAT+GGG | - | chr7_4:41284653-41284672 | Msa1154010:CDS | 40.0% | |
| GGATCTGTGGAGAATTTATG+GGG | - | chr7_4:41284654-41284673 | Msa1154010:CDS | 40.0% | |
| ! | AGCTTTTCTATGCTGTCATC+AGG | - | chr7_4:41284755-41284774 | Msa1154010:CDS | 40.0% |
| !! | TTGCTTTTCACCACCACCAA+AGG | + | chr7_4:41282260-41282279 | None:intergenic | 45.0% |
| CTCCAATTCATCATGTCGCA+AGG | - | chr7_4:41282401-41282420 | Msa1154010:CDS | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | - | chr7_4:41282425-41282444 | Msa1154010:intron | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | + | chr7_4:41282797-41282816 | None:intergenic | 45.0% | |
| TTTCCACCTATTTCGGAACC+AGG | - | chr7_4:41282986-41283005 | Msa1154010:intron | 45.0% | |
| TTCCACCTATTTCGGAACCA+GGG | - | chr7_4:41282987-41283006 | Msa1154010:intron | 45.0% | |
| AACATTTAACCGGATGGACC+CGG | - | chr7_4:41283310-41283329 | Msa1154010:CDS | 45.0% | |
| CTATTATCAGTTTCTCCCCC+GGG | + | chr7_4:41283331-41283350 | None:intergenic | 45.0% | |
| CCTATTATCAGTTTCTCCCC+CGG | + | chr7_4:41283332-41283351 | None:intergenic | 45.0% | |
| CGGGGGAGAAACTGATAATA+GGG | - | chr7_4:41283330-41283349 | Msa1154010:CDS | 45.0% | |
| ! | AATAGGGTTTCGAAGGGCAT+CGG | - | chr7_4:41283346-41283365 | Msa1154010:CDS | 45.0% |
| CCCTTCTTTGCAATGATAGG+AGG | + | chr7_4:41284208-41284227 | None:intergenic | 45.0% | |
| GTGCTCAGAATGGAGAAAGT+TGG | - | chr7_4:41284632-41284651 | Msa1154010:CDS | 45.0% | |
| ATGGAGAAAGTTGGGATCTG+TGG | - | chr7_4:41284641-41284660 | Msa1154010:CDS | 45.0% | |
| CTCGAATAGTGGCACAATGG+CGG | + | chr7_4:41282794-41282813 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | - | chr7_4:41282826-41282845 | Msa1154010:intron | 50.0% | |
| TCCACCTATTTCGGAACCAG+GGG | - | chr7_4:41282988-41283007 | Msa1154010:intron | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | + | chr7_4:41282995-41283014 | None:intergenic | 50.0% | |
| ACATTTAACCGGATGGACCC+GGG | - | chr7_4:41283311-41283330 | Msa1154010:CDS | 50.0% | |
| CCGGGGGAGAAACTGATAAT+AGG | - | chr7_4:41283329-41283348 | Msa1154010:CDS | 50.0% | |
| !! | GGCATCGGCTTCTTCTATAC+AGG | - | chr7_4:41283361-41283380 | Msa1154010:CDS | 50.0% |
| ACAACAGGGTGAACGAGCAA+TGG | - | chr7_4:41284595-41284614 | Msa1154010:CDS | 50.0% | |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | + | chr7_4:41282304-41282323 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | - | chr7_4:41282834-41282853 | Msa1154010:intron | 55.0% |
| CCACCTATTTCGGAACCAGG+GGG | - | chr7_4:41282989-41283008 | Msa1154010:intron | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | - | chr7_4:41283312-41283331 | Msa1154010:CDS | 55.0% | |
| ATTTAACCGGATGGACCCGG+GGG | - | chr7_4:41283313-41283332 | Msa1154010:CDS | 55.0% | |
| !! | TCAGGGTGCTGTCTCACAGT+AGG | + | chr7_4:41284403-41284422 | None:intergenic | 55.0% |
| CCCCCTGGTTCCGAAATAGG+TGG | + | chr7_4:41282992-41283011 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | + | chr7_4:41283322-41283341 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 41282223 | 41284804 | 41282223 | ID=Msa1154010;Name=Msa1154010 |
| chr7_4 | mRNA | 41282223 | 41284804 | 41282223 | ID=Msa1154010-mRNA-1;Parent=Msa1154010;Name=Msa1154010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|8|0|344 |
| chr7_4 | exon | 41284515 | 41284804 | 41284515 | ID=Msa1154010-mRNA-1:exon:9975;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41284148 | 41284244 | 41284148 | ID=Msa1154010-mRNA-1:exon:9974;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41283873 | 41284047 | 41283873 | ID=Msa1154010-mRNA-1:exon:9973;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41283645 | 41283718 | 41283645 | ID=Msa1154010-mRNA-1:exon:9972;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41283157 | 41283402 | 41283157 | ID=Msa1154010-mRNA-1:exon:9971;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41282785 | 41282825 | 41282785 | ID=Msa1154010-mRNA-1:exon:9970;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41282342 | 41282425 | 41282342 | ID=Msa1154010-mRNA-1:exon:9969;Parent=Msa1154010-mRNA-1 |
| chr7_4 | exon | 41282223 | 41282250 | 41282223 | ID=Msa1154010-mRNA-1:exon:9968;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41284515 | 41284804 | 41284515 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41284148 | 41284244 | 41284148 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41283873 | 41284047 | 41283873 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41283645 | 41283718 | 41283645 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41283157 | 41283402 | 41283157 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41282785 | 41282825 | 41282785 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41282342 | 41282425 | 41282342 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| chr7_4 | CDS | 41282223 | 41282250 | 41282223 | ID=Msa1154010-mRNA-1:cds;Parent=Msa1154010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
