AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154650 MtrunA17_Chr7g0245861 99.010 101 1 0 1 101 1 101 5.50e-71 211
Msa1154650 MtrunA17_Chr8g0351721 61.538 195 63 6 4 194 10 196 1.64e-67 205
Msa1154650 MtrunA17_Chr8g0351701 72.642 106 27 2 11 116 22 125 4.55e-52 167
Msa1154650 MtrunA17_Chr7g0245871 67.619 105 32 2 12 116 27 129 4.38e-46 152
Msa1154650 MtrunA17_Chr7g0261031 65.546 119 36 4 10 125 6 122 1.74e-45 149
Msa1154650 MtrunA17_Chr1g0184271 54.225 142 60 4 12 151 12 150 5.30e-45 149
Msa1154650 MtrunA17_Chr7g0260971 65.487 113 37 2 4 116 6 116 1.75e-44 147
Msa1154650 MtrunA17_Chr1g0184281 61.404 114 42 2 10 123 13 124 1.07e-41 139
Msa1154650 MtrunA17_Chr6g0460951 62.385 109 37 3 12 120 40 144 8.67e-40 135
Msa1154650 MtrunA17_Chr5g0435641 61.616 99 36 2 10 108 5 101 2.36e-39 133
Msa1154650 MtrunA17_Chr5g0437571 43.636 165 83 4 9 169 3 161 1.33e-36 125
Msa1154650 MtrunA17_Chr3g0114061 51.261 119 55 2 6 124 2 117 1.72e-34 119
Msa1154650 MtrunA17_Chr2g0311601 53.509 114 44 3 8 115 3 113 9.90e-34 117
Msa1154650 MtrunA17_Chr7g0227511 53.043 115 51 2 12 126 11 122 6.60e-33 116
Msa1154650 MtrunA17_Chr3g0106101 51.402 107 49 2 9 115 4 107 3.39e-32 114
Msa1154650 MtrunA17_Chr4g0058651 58.586 99 38 2 10 108 9 104 1.23e-31 113
Msa1154650 MtrunA17_Chr3g0117121 56.731 104 42 2 12 115 10 110 2.60e-31 112
Msa1154650 MtrunA17_Chr6g0449641 53.704 108 47 2 12 119 9 113 3.41e-31 110
Msa1154650 MtrunA17_Chr4g0043421 54.902 102 43 2 12 113 15 113 4.57e-31 111
Msa1154650 MtrunA17_Chr4g0030001 42.958 142 67 3 11 141 23 161 5.06e-31 111
Msa1154650 MtrunA17_Chr5g0437401 51.923 104 47 2 13 116 12 112 1.62e-30 110
Msa1154650 MtrunA17_Chr5g0438091 43.038 158 78 5 12 162 39 191 3.20e-29 107
Msa1154650 MtrunA17_Chr3g0097221 52.778 108 48 2 12 119 7 111 1.34e-28 108
Msa1154650 MtrunA17_Chr6g0449651 46.825 126 55 3 10 135 65 178 5.07e-28 104
Msa1154650 MtrunA17_Chr3g0113891 50.000 100 47 2 13 112 15 111 1.49e-27 102
Msa1154650 MtrunA17_Chr3g0115431 50.926 108 50 2 9 116 6 110 1.81e-27 103
Msa1154650 MtrunA17_Chr5g0402611 52.381 105 47 2 12 116 8 109 3.23e-27 105
Msa1154650 MtrunA17_Chr1g0200201 50.485 103 48 2 13 115 73 172 8.27e-27 102
Msa1154650 MtrunA17_Chr3g0129071 50.962 104 48 2 12 115 47 147 9.34e-27 102
Msa1154650 MtrunA17_Chr6g0460941 54.255 94 41 2 8 101 3 94 2.49e-26 96.7
Msa1154650 MtrunA17_Chr5g0432451 53.846 104 45 2 12 115 43 143 6.45e-23 91.7
Msa1154650 MtrunA17_Chr5g0444351 42.453 106 58 2 11 116 4 106 1.92e-22 88.2
Msa1154650 MtrunA17_Chr8g0353981 49.550 111 53 2 12 122 7 114 1.17e-21 88.6
Msa1154650 MtrunA17_Chr7g0225111 38.462 104 61 2 13 116 6 106 3.28e-20 81.6
Msa1154650 MtrunA17_Chr8g0374601 39.048 105 61 2 12 116 26 127 2.46e-17 77.8
Msa1154650 MtrunA17_Chr8g0374591 40.952 105 59 2 12 116 8 109 1.02e-16 73.2
Msa1154650 MtrunA17_Chr2g0330201 37.143 105 63 2 13 117 20 121 1.08e-15 73.6
Msa1154650 MtrunA17_Chr8g0342351 37.736 106 63 2 13 118 13 115 1.12e-15 73.2
Msa1154650 MtrunA17_Chr6g0452691 39.623 106 60 3 13 117 10 112 3.48e-15 70.5
Msa1154650 MtrunA17_Chr8g0374581 36.538 104 64 1 12 115 8 109 9.43e-15 70.1
Msa1154650 MtrunA17_Chr4g0040831 40.625 96 54 2 13 108 16 108 1.14e-14 69.3
Msa1154650 MtrunA17_Chr4g0059901 37.143 105 63 2 13 117 11 112 1.24e-14 70.1
Msa1154650 MtrunA17_Chr6g0452671 33.929 112 70 3 1 112 1 108 1.83e-13 66.2
Msa1154650 MtrunA17_Chr6g0452661 34.906 106 58 5 13 110 10 112 1.97e-12 63.9
Msa1154650 MtrunA17_Chr2g0326051 51.786 56 27 0 60 115 5 60 1.53e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154650 AT2G45410.1 70.588 119 32 3 15 132 19 135 3.03e-52 166
Msa1154650 AT4G00210.1 58.278 151 60 3 10 160 9 156 3.75e-52 167
Msa1154650 AT2G45420.1 75.238 105 24 2 15 119 40 142 1.61e-48 159
Msa1154650 AT4G00220.1 69.524 105 30 2 15 119 20 122 1.56e-45 150
Msa1154650 AT3G03760.1 68.468 111 32 3 12 122 51 158 6.58e-45 150
Msa1154650 AT3G58190.1 57.851 121 49 2 12 132 11 129 9.43e-45 148
Msa1154650 AT2G42430.1 49.711 173 65 6 10 171 13 174 3.90e-44 147
Msa1154650 AT2G42440.1 54.545 121 53 2 10 130 5 123 9.59e-43 144
Msa1154650 AT5G06080.1 48.026 152 64 4 10 151 5 151 1.61e-40 136
Msa1154650 AT2G31310.1 58.879 107 42 2 10 116 5 109 1.89e-39 133
Msa1154650 AT2G30130.1 50.407 123 57 3 6 128 2 120 1.21e-33 119
Msa1154650 AT5G63090.4 57.143 105 42 2 12 116 11 112 2.75e-31 112
Msa1154650 AT5G63090.3 57.143 105 42 2 12 116 11 112 2.75e-31 112
Msa1154650 AT5G63090.2 57.143 105 42 2 12 116 11 112 2.75e-31 112
Msa1154650 AT5G63090.1 57.143 105 42 2 12 116 11 112 2.75e-31 112
Msa1154650 AT1G16530.1 49.153 118 55 2 11 125 13 128 3.46e-31 111
Msa1154650 AT3G27650.1 53.846 104 45 2 12 115 39 139 3.99e-30 108
Msa1154650 AT3G11090.1 41.290 155 83 5 13 163 12 162 2.12e-29 107
Msa1154650 AT1G07900.1 49.524 105 50 2 11 115 32 133 4.91e-29 107
Msa1154650 AT2G28500.1 50.962 104 48 2 12 115 55 155 9.86e-29 107
Msa1154650 AT5G66870.1 51.095 137 52 6 12 136 7 140 1.02e-27 106
Msa1154650 AT1G31320.1 53.333 90 39 2 12 101 13 99 1.10e-27 103
Msa1154650 AT3G26660.1 44.762 105 55 2 13 117 6 107 3.13e-27 100
Msa1154650 AT3G26620.1 44.762 105 55 2 13 117 6 107 5.20e-27 99.8
Msa1154650 AT2G23660.2 47.115 104 52 2 12 115 5 105 4.74e-25 99.4
Msa1154650 AT2G23660.3 47.115 104 52 2 12 115 5 105 4.74e-25 99.4
Msa1154650 AT2G23660.1 47.115 104 52 2 12 115 5 105 4.74e-25 99.4
Msa1154650 AT2G30340.1 48.077 104 51 2 12 115 52 152 1.20e-24 97.4
Msa1154650 AT2G30340.2 48.077 104 51 2 12 115 53 153 1.28e-24 97.4
Msa1154650 AT3G50510.1 43.636 110 59 2 7 116 7 113 5.44e-23 91.7
Msa1154650 AT3G50510.2 43.636 110 59 2 7 116 7 113 5.44e-23 91.7
Msa1154650 AT2G40470.1 52.885 104 46 2 12 115 45 145 6.76e-22 89.4
Msa1154650 AT2G40470.2 52.885 104 46 2 12 115 20 120 7.00e-22 88.6
Msa1154650 AT1G65620.1 52.381 105 47 2 12 116 9 110 8.74e-22 88.6
Msa1154650 AT1G65620.4 52.381 105 47 2 12 116 9 110 8.74e-22 88.6
Msa1154650 AT1G65620.3 52.381 105 47 2 12 116 9 110 8.74e-22 88.6
Msa1154650 AT1G65620.5 52.381 105 47 2 12 116 9 110 8.74e-22 88.6
Msa1154650 AT1G65620.2 52.381 105 47 2 12 116 9 110 8.74e-22 88.6
Msa1154650 AT1G72980.1 35.659 129 75 4 9 135 8 130 1.14e-15 72.8
Msa1154650 AT3G13850.1 31.013 158 100 4 13 165 37 190 3.67e-15 72.0
Msa1154650 AT5G35900.1 33.043 115 74 2 13 127 6 117 5.31e-15 70.5
Msa1154650 AT3G47870.1 29.907 107 72 2 11 117 35 138 2.21e-12 64.7
Msa1154650 AT1G06280.1 41.558 77 42 2 13 89 25 98 2.59e-12 63.5

Find 36 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCTACTGACCCTGTTTA+TGG 0.239262 7_4:-42212060 Msa1154650:CDS
TTAGAGAGAGAGATGGATTT+GGG 0.271089 7_4:-42212315 None:intergenic
TTTAGAGAGAGAGATGGATT+TGG 0.290229 7_4:-42212316 None:intergenic
AAGGCAAAGCTTGGAATTCC+TGG 0.322902 7_4:+42209633 None:intergenic
GTCATGAAATTGTTGATTAT+AGG 0.332835 7_4:+42209655 None:intergenic
GGATGTGGGGATGACGGTGG+TGG 0.364421 7_4:-42212294 Msa1154650:CDS
TGACCTGATGACTCAAAATA+TGG 0.381006 7_4:+42212210 None:intergenic
AGAGAGATGGATTTGGGATG+TGG 0.394313 7_4:-42212309 None:intergenic
CTTTGAGGATGTTGAAATTG+AGG 0.397628 7_4:+42209824 None:intergenic
TGAGCAACACAACCATAAAC+AGG 0.407283 7_4:+42212048 None:intergenic
GCTGCAGTTCATAAGGTGTT+TGG 0.429613 7_4:-42212171 Msa1154650:CDS
CCTCTTTGCTCTTCAACAAC+AGG 0.440953 7_4:-42212025 Msa1154650:intron
GCATCAAGACGCTTATGAAC+TGG 0.441293 7_4:+42212114 None:intergenic
GAGAGATGGATTTGGGATGT+GGG 0.451155 7_4:-42212308 None:intergenic
TTGGGATGTGGGGATGACGG+TGG 0.470548 7_4:-42212297 Msa1154650:CDS
AAAATTCTCAAGGCAAAGCT+TGG 0.474481 7_4:+42209624 None:intergenic
GATTTGGGATGTGGGGATGA+CGG 0.487399 7_4:-42212300 Msa1154650:CDS
TGATTATAGGAATAGTATGA+TGG 0.495256 7_4:+42209668 None:intergenic
TCTGCTATGAGGCTCTTGCT+AGG 0.495453 7_4:-42212080 Msa1154650:CDS
CTGCTATGAGGCTCTTGCTA+GGG 0.502068 7_4:-42212079 Msa1154650:CDS
GCGATTCAATATTGAAAGAC+GGG 0.503238 7_4:+42209859 None:intergenic
AGTAAGGATGAATGCAAAGT+TGG 0.505000 7_4:+42209788 None:intergenic
TCTTACATGTCCATGCACTT+TGG 0.510678 7_4:-42209737 Msa1154650:CDS
GATGTGGGGATGACGGTGGT+GGG 0.515639 7_4:-42212293 Msa1154650:CDS
TGAAAGACGGGCTTGTACAT+AGG 0.516839 7_4:+42209871 None:intergenic
TGTTGTTACTCTCTGCTATG+AGG 0.534536 7_4:-42212091 Msa1154650:CDS
GGTGATATTGAAGAGCTTTG+AGG 0.547406 7_4:+42209809 None:intergenic
TTGAGAAGAAAGTGTGTGAA+AGG 0.553888 7_4:-42212249 Msa1154650:CDS
TGATGACAAATGATGAAGTA+AGG 0.555832 7_4:+42209772 None:intergenic
GATGACGGTGGTGGGCCTTG+TGG 0.575954 7_4:-42212285 Msa1154650:CDS
TGCGATTCAATATTGAAAGA+CGG 0.576843 7_4:+42209858 None:intergenic
TAATCAACAATTTCATGACC+AGG 0.586293 7_4:-42209651 Msa1154650:CDS
AGAGATGGATTTGGGATGTG+GGG 0.590943 7_4:-42212307 None:intergenic
ATTAGGATGACCAAAGTGCA+TGG 0.604548 7_4:+42209727 None:intergenic
CCTGTTGTTGAAGAGCAAAG+AGG 0.642330 7_4:+42212025 None:intergenic
GAGCAACACAACCATAAACA+GGG 0.707824 7_4:+42212049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTGGAAAATAAAT+AGG + chr7_4:42210255-42210274 None:intergenic 10.0%
!!! AAATAGGATTTATATTATTT+TGG + chr7_4:42210267-42210286 None:intergenic 10.0%
!! AAAAAATGACATATATAAAT+AGG + chr7_4:42210283-42210302 None:intergenic 10.0%
!!! ATTTTATCAATAATATTCTT+TGG - chr7_4:42210313-42210332 Msa1154650:intron 10.0%
!! TATATATATACGAATTAGTT+AGG + chr7_4:42210009-42210028 None:intergenic 15.0%
!! TAATTCGTATATATATAACT+TGG - chr7_4:42210012-42210031 Msa1154650:intron 15.0%
!! ATTCAAGAAAAACTTATAAT+AGG - chr7_4:42210132-42210151 Msa1154650:intron 15.0%
!! TAAATAGGATTTATATTGTT+TGG + chr7_4:42210240-42210259 None:intergenic 15.0%
!!! CTTTTTTTTTTCTTTTTTTC+TGG + chr7_4:42210457-42210476 None:intergenic 15.0%
!! CAGAAAAAAAGAAAAAAAAA+AGG - chr7_4:42210455-42210474 Msa1154650:intron 15.0%
!!! AAGAATCTTTTCTTATATAT+AGG + chr7_4:42211308-42211327 None:intergenic 15.0%
!!! AAGAATCTTTTCTTATATAT+AGG - chr7_4:42211308-42211327 Msa1154650:intron 15.0%
!! ATAAATGATAAATGATCAAT+AGG + chr7_4:42211953-42211972 None:intergenic 15.0%
!! TTGATCATTTATCATTTATA+TGG - chr7_4:42211954-42211973 Msa1154650:intron 15.0%
!! TTTATCATTTATATGGTATA+TGG - chr7_4:42211961-42211980 Msa1154650:intron 15.0%
!! TTATCATTTATATGGTATAT+GGG - chr7_4:42211962-42211981 Msa1154650:intron 15.0%
!! TTATATACTTGATTAATTAC+AGG - chr7_4:42212016-42212035 Msa1154650:intron 15.0%
!! AGAAGAATGGTTTAATAAAT+TGG - chr7_4:42210337-42210356 Msa1154650:intron 20.0%
!! AATTAAATAAGTATCCTAAC+TGG - chr7_4:42210401-42210420 Msa1154650:intron 20.0%
!!! TATATTGCTTTAATTTGTTC+AGG + chr7_4:42210562-42210581 None:intergenic 20.0%
!!! TCAAAGGCATAATATAATTA+AGG - chr7_4:42210835-42210854 Msa1154650:intron 20.0%
!! AGTCACACAAAAAAAAAAAA+AGG - chr7_4:42211011-42211030 Msa1154650:intron 20.0%
!! GTCACACAAAAAAAAAAAAA+GGG - chr7_4:42211012-42211031 Msa1154650:intron 20.0%
!! AAATGTTAATAGTACCTTTA+GGG - chr7_4:42211035-42211054 Msa1154650:intron 20.0%
!!! TGACTTACATAATCTTATTT+GGG + chr7_4:42211168-42211187 None:intergenic 20.0%
!! ATGACTTACATAATCTTATT+TGG + chr7_4:42211169-42211188 None:intergenic 20.0%
!!! TAAGAAAAGATTCTTTTTCT+AGG - chr7_4:42211210-42211229 Msa1154650:intron 20.0%
!! TGTATAAATACAACTATGTT+AGG + chr7_4:42211548-42211567 None:intergenic 20.0%
!!! TGATATTGATCATTTTGATT+AGG + chr7_4:42212227-42212246 None:intergenic 20.0%
! AATATTCTTTGGTAGAAGAA+TGG - chr7_4:42210324-42210343 Msa1154650:intron 25.0%
! TCTAAAGAAAATTACCAGTT+AGG + chr7_4:42210418-42210437 None:intergenic 25.0%
! AGAAGAAAGATCATATTCAT+AGG - chr7_4:42210500-42210519 Msa1154650:intron 25.0%
! GAAGAAAGATCATATTCATA+GGG - chr7_4:42210501-42210520 Msa1154650:intron 25.0%
! GAAATGTTAATAGTACCTTT+AGG - chr7_4:42211034-42211053 Msa1154650:intron 25.0%
! AATTTGTACATTCAAAGCAT+TGG - chr7_4:42211095-42211114 Msa1154650:intron 25.0%
!! TCTTTTCTTATATATAGGAC+CGG + chr7_4:42211313-42211332 None:intergenic 25.0%
!! TCTTTTCTTATATATAGGAC+CGG - chr7_4:42211313-42211332 Msa1154650:intron 25.0%
! ATTTCACTTCATTAAAGAGT+GGG + chr7_4:42211434-42211453 None:intergenic 25.0%
! AATTTCACTTCATTAAAGAG+TGG + chr7_4:42211435-42211454 None:intergenic 25.0%
! TTTCTAATTCGCAAAAGATA+AGG + chr7_4:42211620-42211639 None:intergenic 25.0%
! CTAATACATTACACAACAAT+GGG - chr7_4:42211863-42211882 Msa1154650:intron 25.0%
! TAATACATTACACAACAATG+GGG - chr7_4:42211864-42211883 Msa1154650:intron 25.0%
!! AGTGTTTAGGATAATAATGT+TGG + chr7_4:42211902-42211921 None:intergenic 25.0%
! GATAAATGATCAATAGGTTA+GGG + chr7_4:42211947-42211966 None:intergenic 25.0%
! TGATAAATGATCAATAGGTT+AGG + chr7_4:42211948-42211967 None:intergenic 25.0%
!!! TAGTATGATGGATTTTCAAA+AGG + chr7_4:42212257-42212276 None:intergenic 25.0%
! TGATTATAGGAATAGTATGA+TGG + chr7_4:42212269-42212288 None:intergenic 25.0%
!! GTCATGAAATTGTTGATTAT+AGG + chr7_4:42212282-42212301 None:intergenic 25.0%
GGCAGAAAAAATGAAAACTA+AGG + chr7_4:42209988-42210007 None:intergenic 30.0%
!! TAACTTGGTGCTTTAAAAAC+TGG - chr7_4:42210027-42210046 Msa1154650:intron 30.0%
AATGTATATTCTCAAGGTGT+TGG - chr7_4:42210168-42210187 Msa1154650:intron 30.0%
CCACTAAAAGGAAACTAATA+AGG + chr7_4:42210207-42210226 None:intergenic 30.0%
!! CCTTATTAGTTTCCTTTTAG+TGG - chr7_4:42210204-42210223 Msa1154650:intron 30.0%
!!! TGTGTACTTTTCTAAAGTAG+TGG - chr7_4:42210619-42210638 Msa1154650:intron 30.0%
TTGTATTGAGTATGTTCTGT+TGG - chr7_4:42210711-42210730 Msa1154650:intron 30.0%
TGTATTGAGTATGTTCTGTT+GGG - chr7_4:42210712-42210731 Msa1154650:intron 30.0%
ATGTTTGATCGTGCATTTAA+TGG + chr7_4:42210862-42210881 None:intergenic 30.0%
CATCATATTCCAATATTGTG+TGG + chr7_4:42211367-42211386 None:intergenic 30.0%
! AATATTGGAATATGATGACG+AGG - chr7_4:42211370-42211389 Msa1154650:intron 30.0%
! ATATTGGAATATGATGACGA+GGG - chr7_4:42211371-42211390 Msa1154650:intron 30.0%
CAAAAGATAAGGTAACAAAC+GGG + chr7_4:42211609-42211628 None:intergenic 30.0%
GCAAAAGATAAGGTAACAAA+CGG + chr7_4:42211610-42211629 None:intergenic 30.0%
TGTATTAGCGATGACATTAA+AGG + chr7_4:42211851-42211870 None:intergenic 30.0%
GCTAATACATTACACAACAA+TGG - chr7_4:42211862-42211881 Msa1154650:intron 30.0%
! CAGCTTTAGTATTAGTGTTT+AGG + chr7_4:42211915-42211934 None:intergenic 30.0%
ACTTGATTAATTACAGGTTG+TGG - chr7_4:42212022-42212041 Msa1154650:intron 30.0%
TGCGATTCAATATTGAAAGA+CGG + chr7_4:42212079-42212098 None:intergenic 30.0%
TGATGACAAATGATGAAGTA+AGG + chr7_4:42212165-42212184 None:intergenic 30.0%
TAATCAACAATTTCATGACC+AGG - chr7_4:42212283-42212302 Msa1154650:CDS 30.0%
! TTGAGAAGAAAGTGTGTGAA+AGG - chr7_4:42209685-42209704 Msa1154650:CDS 35.0%
TGACCTGATGACTCAAAATA+TGG + chr7_4:42209727-42209746 None:intergenic 35.0%
!! TATTTTGAGTCATCAGGTCA+AGG - chr7_4:42209727-42209746 Msa1154650:CDS 35.0%
! TCATTTTGCTGCAGTTCATA+AGG - chr7_4:42209756-42209775 Msa1154650:CDS 35.0%
GCAGCTAATGTATATTCTCA+AGG - chr7_4:42210162-42210181 Msa1154650:intron 35.0%
! AAGGTATAAGAGTATGAGAG+CGG - chr7_4:42210474-42210493 Msa1154650:intron 35.0%
ACTATTATGCATTGCACGTA+TGG - chr7_4:42210662-42210681 Msa1154650:intron 35.0%
!! AGCTCTGGTTAGGTTTTATA+TGG - chr7_4:42210750-42210769 Msa1154650:intron 35.0%
AGTTTCATGGTAAGTCTAGT+GGG + chr7_4:42210905-42210924 None:intergenic 35.0%
AAGTTTCATGGTAAGTCTAG+TGG + chr7_4:42210906-42210925 None:intergenic 35.0%
ATGTGAGGAACTAAGTTTCA+TGG + chr7_4:42210918-42210937 None:intergenic 35.0%
GTAATCATCACATGAATGTG+AGG + chr7_4:42210933-42210952 None:intergenic 35.0%
TTCTTATATATAGGACCGGA+GGG + chr7_4:42211317-42211336 None:intergenic 35.0%
TTTCTTATATATAGGACCGG+AGG + chr7_4:42211316-42211335 None:intergenic 35.0%
TTTCTTATATATAGGACCGG+AGG - chr7_4:42211316-42211335 Msa1154650:intron 35.0%
TTCTTATATATAGGACCGGA+GGG - chr7_4:42211317-42211336 Msa1154650:intron 35.0%
ACATAAATACATACTCCCTC+CGG + chr7_4:42211335-42211354 None:intergenic 35.0%
TCATGTCAACCACACAATAT+TGG - chr7_4:42211355-42211374 Msa1154650:intron 35.0%
AAGTGTCACAACATAGTGTT+AGG - chr7_4:42211582-42211601 Msa1154650:intron 35.0%
GCGATTCAATATTGAAAGAC+GGG + chr7_4:42212078-42212097 None:intergenic 35.0%
! CTTTGAGGATGTTGAAATTG+AGG + chr7_4:42212113-42212132 None:intergenic 35.0%
AGTAAGGATGAATGCAAAGT+TGG + chr7_4:42212149-42212168 None:intergenic 35.0%
!! GATGGATTTTCAAAAGGTGT+TGG + chr7_4:42212251-42212270 None:intergenic 35.0%
AAAAACTTGCAAGCACCACA+AGG + chr7_4:42209667-42209686 None:intergenic 40.0%
!! GCACCATATTTTGAGTCATC+AGG - chr7_4:42209721-42209740 Msa1154650:CDS 40.0%
TGTTGTTACTCTCTGCTATG+AGG - chr7_4:42209843-42209862 Msa1154650:CDS 40.0%
GAGCAACACAACCATAAACA+GGG + chr7_4:42209888-42209907 None:intergenic 40.0%
TGAGCAACACAACCATAAAC+AGG + chr7_4:42209889-42209908 None:intergenic 40.0%
AAAACTGGTAACCACTAACC+TGG - chr7_4:42210042-42210061 Msa1154650:intron 40.0%
!! TTATGAACTTGTTACCCTCC+AGG + chr7_4:42210063-42210082 None:intergenic 40.0%
GGACAAAAGAGACCACTAAA+AGG + chr7_4:42210219-42210238 None:intergenic 40.0%
! AGGTATAAGAGTATGAGAGC+GGG - chr7_4:42210475-42210494 Msa1154650:intron 40.0%
TTTGACACATTTGTCAGCTC+TGG - chr7_4:42210735-42210754 Msa1154650:intron 40.0%
TGCATGTCTTGTGATCTCAA+AGG - chr7_4:42210819-42210838 Msa1154650:intron 40.0%
GTTTCATGGTAAGTCTAGTG+GGG + chr7_4:42210904-42210923 None:intergenic 40.0%
!! TACCTTTAGGGCACTCTTTA+AGG - chr7_4:42211047-42211066 Msa1154650:intron 40.0%
!! ATCCTTAAAGAGTGCCCTAA+AGG + chr7_4:42211052-42211071 None:intergenic 40.0%
ATGTAAGTCATTACTCCCTC+CGG - chr7_4:42211178-42211197 Msa1154650:intron 40.0%
TAAAGAGTGGGTGATAGAGT+GGG + chr7_4:42211422-42211441 None:intergenic 40.0%
TTAAAGAGTGGGTGATAGAG+TGG + chr7_4:42211423-42211442 None:intergenic 40.0%
GGTGATATTGAAGAGCTTTG+AGG + chr7_4:42212128-42212147 None:intergenic 40.0%
TCTTACATGTCCATGCACTT+TGG - chr7_4:42212197-42212216 Msa1154650:CDS 40.0%
ATTAGGATGACCAAAGTGCA+TGG + chr7_4:42212210-42212229 None:intergenic 40.0%
! GCTGCAGTTCATAAGGTGTT+TGG - chr7_4:42209763-42209782 Msa1154650:CDS 45.0%
GCATCAAGACGCTTATGAAC+TGG + chr7_4:42209823-42209842 None:intergenic 45.0%
CCTGTTGTTGAAGAGCAAAG+AGG + chr7_4:42209912-42209931 None:intergenic 45.0%
CCTCTTTGCTCTTCAACAAC+AGG - chr7_4:42209909-42209928 Msa1154650:intron 45.0%
! GGTATAAGAGTATGAGAGCG+GGG - chr7_4:42210476-42210495 Msa1154650:intron 45.0%
! CACATTTGTCAGCTCTGGTT+AGG - chr7_4:42210740-42210759 Msa1154650:intron 45.0%
TGGAACGAATGCATACACCA+AGG - chr7_4:42210770-42210789 Msa1154650:intron 45.0%
ACATAACACTGCCGTGAAAG+GGG + chr7_4:42210800-42210819 None:intergenic 45.0%
CACATAACACTGCCGTGAAA+GGG + chr7_4:42210801-42210820 None:intergenic 45.0%
TGGGTGATAGAGTGGGATAT+TGG + chr7_4:42211415-42211434 None:intergenic 45.0%
! TGAAAGACGGGCTTGTACAT+AGG + chr7_4:42212066-42212085 None:intergenic 45.0%
AAGGCAAAGCTTGGAATTCC+TGG + chr7_4:42212304-42212323 None:intergenic 45.0%
! GATTTGGGATGTGGGGATGA+CGG - chr7_4:42209634-42209653 Msa1154650:CDS 50.0%
TCTGCTATGAGGCTCTTGCT+AGG - chr7_4:42209854-42209873 Msa1154650:CDS 50.0%
CTGCTATGAGGCTCTTGCTA+GGG - chr7_4:42209855-42209874 Msa1154650:CDS 50.0%
AGGGCTACTGACCCTGTTTA+TGG - chr7_4:42209874-42209893 Msa1154650:CDS 50.0%
ACTGGTAACCACTAACCTGG+AGG - chr7_4:42210045-42210064 Msa1154650:intron 50.0%
CTGGTAACCACTAACCTGGA+GGG - chr7_4:42210046-42210065 Msa1154650:intron 50.0%
CTTGTTACCCTCCAGGTTAG+TGG + chr7_4:42210056-42210075 None:intergenic 50.0%
GCACATAACACTGCCGTGAA+AGG + chr7_4:42210802-42210821 None:intergenic 50.0%
GTCTAGTGGGGTAAGTCTAG+TGG + chr7_4:42210892-42210911 None:intergenic 50.0%
ACCAAGGCATGCCCCTTTCA+CGG - chr7_4:42210786-42210805 Msa1154650:intron 55.0%
! TTGGGATGTGGGGATGACGG+TGG - chr7_4:42209637-42209656 Msa1154650:CDS 60.0%
! GATGTGGGGATGACGGTGGT+GGG - chr7_4:42209641-42209660 Msa1154650:CDS 60.0%
! GGATGTGGGGATGACGGTGG+TGG - chr7_4:42209640-42209659 Msa1154650:CDS 65.0%
!! GATGACGGTGGTGGGCCTTG+TGG - chr7_4:42209649-42209668 Msa1154650:CDS 65.0%
! GCCGTGAAAGGGGCATGCCT+TGG + chr7_4:42210790-42210809 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 42209631 42212325 42209631 ID=Msa1154650;Name=Msa1154650
chr7_4 mRNA 42209631 42212325 42209631 ID=Msa1154650-mRNA-1;Parent=Msa1154650;Name=Msa1154650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|195
chr7_4 exon 42212026 42212325 42212026 ID=Msa1154650-mRNA-1:exon:10376;Parent=Msa1154650-mRNA-1
chr7_4 exon 42209631 42209918 42209631 ID=Msa1154650-mRNA-1:exon:10375;Parent=Msa1154650-mRNA-1
chr7_4 CDS 42212026 42212325 42212026 ID=Msa1154650-mRNA-1:cds;Parent=Msa1154650-mRNA-1
chr7_4 CDS 42209631 42209918 42209631 ID=Msa1154650-mRNA-1:cds;Parent=Msa1154650-mRNA-1
Gene Sequence

>Msa1154650

ATGGATTTGGGATGTGGGGATGACGGTGGTGGGCCTTGTGGTGCTTGCAAGTTTTTGAGAAGAAAGTGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGTCAAGGAAGTGCTCATTTTGCTGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCTGCTAAGCTACTCACACGTATTCCAGTTCATAAGCGTCTTGATGCTGTTGTTACTCTCTGCTATGAGGCTCTTGCTAGGGCTACTGACCCTGTTTATGGTTGTGTTGCTCACCTCTTTGCTCTTCAACAACAGGTTGTGGAGTTGCAAGCAGAGTTAGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATCTCTGAAGATCCTCAATTTCAACATCCTCAAAGCTCTTCAATATCACCAACTTTGCATTCATCCTTACTTCATCATTTGTCATCAAGCAATGAAACTTCTTACATGTCCATGCACTTTGGTCATCCTAATCAAAATGATCAATATCATCCAACACCTTTTGAAAATCCATCATACTATTCCTATAATCAACAATTTCATGACCAGGAATTCCAAGCTTTGCCTTGA
Protein sequence

>Msa1154650

MDLGCGDDGGGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHLFALQQQVVELQAELAYVQARLSILNRISEDPQFQHPQSSSISPTLHSSLLHHLSSSNETSYMSMHFGHPNQNDQYHPTPFENPSYYSYNQQFHDQEFQALP*