Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154950 | AAX47171.2 | 100.000 | 61 | 0 | 0 | 1 | 61 | 1 | 61 | 1.44e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154950 | sp|Q38838|AGL14_ARATH | 96.721 | 61 | 2 | 0 | 1 | 61 | 1 | 61 | 6.14e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154950 | Q52ZI9 | 100.000 | 61 | 0 | 0 | 1 | 61 | 1 | 61 | 6.88e-36 | 129 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1154950 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154950 | MtrunA17_Chr7g0246431 | 100.000 | 61 | 0 | 0 | 1 | 61 | 1 | 61 | 1.34e-39 | 129 |
| Msa1154950 | MtrunA17_Chr8g0351041 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 2.77e-37 | 122 |
| Msa1154950 | MtrunA17_Chr8g0351031 | 93.443 | 61 | 4 | 0 | 1 | 61 | 1 | 61 | 6.40e-37 | 123 |
| Msa1154950 | MtrunA17_Chr4g0057151 | 90.000 | 60 | 6 | 0 | 1 | 60 | 1 | 60 | 3.57e-33 | 112 |
| Msa1154950 | MtrunA17_Chr7g0246381 | 67.143 | 70 | 23 | 0 | 1 | 70 | 1 | 70 | 2.19e-29 | 99.4 |
| Msa1154950 | MtrunA17_Chr4g0061671 | 79.032 | 62 | 12 | 1 | 1 | 61 | 1 | 62 | 3.33e-29 | 102 |
| Msa1154950 | MtrunA17_Chr8g0351051 | 81.356 | 59 | 11 | 0 | 1 | 59 | 1 | 59 | 2.57e-28 | 101 |
| Msa1154950 | MtrunA17_Chr3g0077501 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 2.72e-28 | 100 |
| Msa1154950 | MtrunA17_Chr8g0377561 | 80.702 | 57 | 11 | 0 | 1 | 57 | 1 | 57 | 2.93e-28 | 97.4 |
| Msa1154950 | MtrunA17_Chr7g0220111 | 75.806 | 62 | 15 | 0 | 1 | 62 | 1 | 62 | 4.13e-28 | 101 |
| Msa1154950 | MtrunA17_Chr6g0455511 | 69.333 | 75 | 17 | 1 | 1 | 69 | 1 | 75 | 4.35e-28 | 101 |
| Msa1154950 | MtrunA17_Chr5g0420091 | 77.966 | 59 | 13 | 0 | 1 | 59 | 1 | 59 | 6.39e-28 | 99.8 |
| Msa1154950 | MtrunA17_Chr3g0122251 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 1.98e-27 | 99.4 |
| Msa1154950 | MtrunA17_Chr1g0173161 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 2.09e-27 | 94.7 |
| Msa1154950 | MtrunA17_Chr3g0097101 | 71.429 | 63 | 18 | 0 | 1 | 63 | 16 | 78 | 2.28e-27 | 99.0 |
| Msa1154950 | MtrunA17_Chr2g0308251 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 4.63e-27 | 94.0 |
| Msa1154950 | MtrunA17_Chr2g0284911 | 75.862 | 58 | 14 | 0 | 3 | 60 | 18 | 75 | 5.56e-27 | 98.6 |
| Msa1154950 | MtrunA17_Chr8g0380021 | 75.862 | 58 | 14 | 0 | 3 | 60 | 19 | 76 | 5.97e-27 | 98.2 |
| Msa1154950 | MtrunA17_Chr5g0427921 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 1.78e-26 | 91.7 |
| Msa1154950 | MtrunA17_Chr4g0020221 | 75.000 | 64 | 16 | 0 | 1 | 64 | 1 | 64 | 1.93e-26 | 97.1 |
| Msa1154950 | MtrunA17_Chr6g0474371 | 72.581 | 62 | 17 | 0 | 1 | 62 | 1 | 62 | 2.23e-26 | 95.1 |
| Msa1154950 | MtrunA17_Chr2g0279821 | 72.131 | 61 | 17 | 0 | 1 | 61 | 1 | 61 | 3.40e-26 | 95.9 |
| Msa1154950 | MtrunA17_Chr4g0061691 | 75.000 | 60 | 15 | 0 | 1 | 60 | 1 | 60 | 7.18e-26 | 95.1 |
| Msa1154950 | MtrunA17_Chr8g0366231 | 70.968 | 62 | 17 | 1 | 1 | 61 | 1 | 62 | 6.16e-25 | 92.8 |
| Msa1154950 | MtrunA17_Chr1g0204111 | 73.333 | 60 | 16 | 0 | 1 | 60 | 17 | 76 | 1.76e-24 | 91.7 |
| Msa1154950 | MtrunA17_Chr5g0412271 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 2.02e-24 | 91.3 |
| Msa1154950 | MtrunA17_Chr5g0412461 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 2.56e-24 | 90.9 |
| Msa1154950 | MtrunA17_Chr7g0220121 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 2.95e-24 | 91.3 |
| Msa1154950 | MtrunA17_Chr4g0018421 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1 | 59 | 7.77e-24 | 89.0 |
| Msa1154950 | MtrunA17_Chr5g0427401 | 68.333 | 60 | 19 | 0 | 1 | 60 | 1 | 60 | 9.07e-24 | 89.4 |
| Msa1154950 | MtrunA17_Chr3g0142191 | 67.213 | 61 | 20 | 0 | 1 | 61 | 1 | 61 | 1.59e-23 | 89.0 |
| Msa1154950 | MtrunA17_Chr5g0425191 | 67.241 | 58 | 19 | 0 | 1 | 58 | 1 | 58 | 6.49e-23 | 84.0 |
| Msa1154950 | MtrunA17_Chr4g0049541 | 67.213 | 61 | 20 | 0 | 1 | 61 | 1 | 61 | 8.78e-23 | 86.7 |
| Msa1154950 | MtrunA17_Chr5g0411691 | 65.000 | 60 | 21 | 0 | 1 | 60 | 1 | 60 | 1.87e-22 | 86.3 |
| Msa1154950 | MtrunA17_Chr3g0125241 | 62.712 | 59 | 22 | 0 | 1 | 59 | 26 | 84 | 2.36e-22 | 85.1 |
| Msa1154950 | MtrunA17_Chr4g0044071 | 63.793 | 58 | 21 | 0 | 1 | 58 | 1 | 58 | 2.85e-22 | 82.8 |
| Msa1154950 | MtrunA17_Chr5g0420081 | 60.759 | 79 | 25 | 2 | 1 | 73 | 1 | 79 | 7.98e-22 | 84.3 |
| Msa1154950 | MtrunA17_Chr1g0159661 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 1.84e-21 | 82.4 |
| Msa1154950 | MtrunA17_Chr4g0049901 | 62.295 | 61 | 23 | 0 | 1 | 61 | 27 | 87 | 3.55e-21 | 82.8 |
| Msa1154950 | MtrunA17_Chr1g0164791 | 61.905 | 63 | 24 | 0 | 1 | 63 | 1 | 63 | 3.57e-21 | 82.8 |
| Msa1154950 | MtrunA17_Chr5g0404951 | 64.912 | 57 | 20 | 0 | 1 | 57 | 1 | 57 | 6.78e-21 | 82.0 |
| Msa1154950 | MtrunA17_Chr1g0166611 | 62.295 | 61 | 23 | 0 | 13 | 73 | 17 | 77 | 7.06e-21 | 79.7 |
| Msa1154950 | MtrunA17_Chr3g0134451 | 66.667 | 60 | 20 | 0 | 1 | 60 | 1 | 60 | 2.94e-20 | 81.6 |
| Msa1154950 | MtrunA17_Chr1g0208581 | 57.143 | 56 | 24 | 0 | 3 | 58 | 10 | 65 | 4.44e-17 | 72.0 |
| Msa1154950 | MtrunA17_Chr2g0292791 | 60.000 | 55 | 22 | 0 | 3 | 57 | 10 | 64 | 9.19e-17 | 71.2 |
| Msa1154950 | MtrunA17_Chr5g0417661 | 45.205 | 73 | 36 | 1 | 1 | 73 | 56 | 124 | 9.94e-17 | 68.9 |
| Msa1154950 | MtrunA17_Chr1g0175611 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 1.60e-16 | 69.3 |
| Msa1154950 | MtrunA17_Chr8g0376821 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 1.85e-16 | 69.3 |
| Msa1154950 | MtrunA17_Chr3g0089141 | 56.364 | 55 | 24 | 0 | 3 | 57 | 10 | 64 | 2.37e-16 | 70.1 |
| Msa1154950 | MtrunA17_Chr1g0208561 | 55.357 | 56 | 25 | 0 | 3 | 58 | 10 | 65 | 2.55e-16 | 70.1 |
| Msa1154950 | MtrunA17_Chr1g0180591 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 3.53e-16 | 68.6 |
| Msa1154950 | MtrunA17_Chr1g0169761 | 54.386 | 57 | 26 | 0 | 1 | 57 | 1 | 57 | 3.84e-16 | 68.6 |
| Msa1154950 | MtrunA17_Chr8g0379021 | 56.364 | 55 | 24 | 0 | 3 | 57 | 13 | 67 | 3.95e-16 | 68.6 |
| Msa1154950 | MtrunA17_Chr1g0175601 | 54.386 | 57 | 26 | 0 | 1 | 57 | 1 | 57 | 6.00e-16 | 68.2 |
| Msa1154950 | MtrunA17_Chr1g0149391 | 50.000 | 72 | 36 | 0 | 3 | 74 | 10 | 81 | 7.30e-16 | 68.9 |
| Msa1154950 | MtrunA17_Chr5g0422421 | 61.818 | 55 | 21 | 0 | 3 | 57 | 10 | 64 | 8.54e-16 | 68.6 |
| Msa1154950 | MtrunA17_Chr8g0357771 | 54.386 | 57 | 26 | 0 | 1 | 57 | 1 | 57 | 1.25e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr3g0099411 | 56.364 | 55 | 24 | 0 | 3 | 57 | 10 | 64 | 1.48e-15 | 67.8 |
| Msa1154950 | MtrunA17_Chr2g0317481 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 2.10e-15 | 67.8 |
| Msa1154950 | MtrunA17_Chr3g0099421 | 58.182 | 55 | 23 | 0 | 3 | 57 | 35 | 89 | 2.14e-15 | 67.8 |
| Msa1154950 | MtrunA17_Chr2g0333981 | 54.386 | 57 | 26 | 0 | 1 | 57 | 11 | 67 | 2.24e-15 | 66.6 |
| Msa1154950 | MtrunA17_Chr4g0018951 | 68.182 | 44 | 14 | 0 | 14 | 57 | 24 | 67 | 2.41e-15 | 66.2 |
| Msa1154950 | MtrunA17_Chr2g0317451 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 2.45e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr8g0355091 | 55.357 | 56 | 25 | 0 | 3 | 58 | 10 | 65 | 2.67e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr1g0206701 | 55.357 | 56 | 25 | 0 | 3 | 58 | 10 | 65 | 2.90e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr1g0206721 | 56.364 | 55 | 24 | 0 | 3 | 57 | 10 | 64 | 2.99e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr5g0419601 | 60.000 | 55 | 22 | 0 | 3 | 57 | 10 | 64 | 3.08e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr1g0187361 | 56.364 | 55 | 24 | 0 | 3 | 57 | 10 | 64 | 3.08e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr4g0074101 | 50.877 | 57 | 28 | 0 | 1 | 57 | 1 | 57 | 3.43e-15 | 66.6 |
| Msa1154950 | MtrunA17_Chr1g0188671 | 56.364 | 55 | 24 | 0 | 3 | 57 | 48 | 102 | 3.60e-15 | 67.4 |
| Msa1154950 | MtrunA17_Chr4g0052061 | 47.541 | 61 | 32 | 0 | 1 | 61 | 1 | 61 | 5.05e-15 | 65.1 |
| Msa1154950 | MtrunA17_Chr4g0052081 | 49.153 | 59 | 30 | 0 | 1 | 59 | 1 | 59 | 7.99e-15 | 65.1 |
| Msa1154950 | MtrunA17_Chr5g0422941 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 9.60e-15 | 65.9 |
| Msa1154950 | MtrunA17_Chr2g0300421 | 51.786 | 56 | 27 | 0 | 3 | 58 | 10 | 65 | 1.22e-14 | 64.7 |
| Msa1154950 | MtrunA17_Chr2g0325971 | 54.545 | 55 | 25 | 0 | 3 | 57 | 10 | 64 | 1.55e-14 | 65.1 |
| Msa1154950 | MtrunA17_Chr3g0111841 | 58.000 | 50 | 21 | 0 | 8 | 57 | 2 | 51 | 1.89e-14 | 61.6 |
| Msa1154950 | MtrunA17_Chr1g0206991 | 52.727 | 55 | 26 | 0 | 3 | 57 | 10 | 64 | 2.02e-14 | 64.3 |
| Msa1154950 | MtrunA17_Chr4g0060841 | 52.830 | 53 | 25 | 0 | 1 | 53 | 1 | 53 | 6.15e-14 | 64.7 |
| Msa1154950 | MtrunA17_Chr8g0356071 | 47.368 | 57 | 30 | 0 | 1 | 57 | 1 | 57 | 4.41e-13 | 60.5 |
| Msa1154950 | MtrunA17_Chr2g0300441 | 50.943 | 53 | 26 | 0 | 5 | 57 | 12 | 64 | 7.17e-13 | 60.8 |
| Msa1154950 | MtrunA17_Chr3g0089151 | 49.091 | 55 | 28 | 0 | 3 | 57 | 10 | 64 | 1.44e-12 | 58.2 |
| Msa1154950 | MtrunA17_Chr3g0119901 | 49.091 | 55 | 28 | 0 | 3 | 57 | 10 | 64 | 1.72e-12 | 59.7 |
| Msa1154950 | MtrunA17_Chr1g0187351 | 55.319 | 47 | 21 | 0 | 11 | 57 | 1 | 47 | 2.00e-12 | 56.6 |
| Msa1154950 | MtrunA17_Chr3g0085241 | 49.091 | 55 | 28 | 0 | 3 | 57 | 42 | 96 | 4.79e-12 | 58.9 |
| Msa1154950 | MtrunA17_Chr4g0071601 | 60.465 | 43 | 17 | 0 | 15 | 57 | 25 | 67 | 5.06e-12 | 58.2 |
| Msa1154950 | MtrunA17_Chr1g0206691 | 54.167 | 48 | 22 | 0 | 11 | 58 | 1 | 48 | 5.14e-12 | 58.5 |
| Msa1154950 | MtrunA17_Chr6g0457851 | 48.000 | 50 | 26 | 0 | 1 | 50 | 11 | 60 | 1.84e-11 | 57.8 |
| Msa1154950 | MtrunA17_Chr6g0449851 | 48.000 | 50 | 26 | 0 | 1 | 50 | 1 | 50 | 5.32e-11 | 56.2 |
| Msa1154950 | MtrunA17_Chr8g0345001 | 49.057 | 53 | 27 | 0 | 3 | 55 | 19 | 71 | 7.82e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154950 | AT4G11880.2 | 98.333 | 60 | 1 | 0 | 1 | 60 | 1 | 60 | 2.18e-37 | 123 |
| Msa1154950 | AT4G11880.3 | 98.333 | 60 | 1 | 0 | 1 | 60 | 1 | 60 | 2.18e-37 | 123 |
| Msa1154950 | AT2G45660.2 | 84.507 | 71 | 6 | 1 | 1 | 71 | 1 | 66 | 2.29e-37 | 122 |
| Msa1154950 | AT4G11880.4 | 96.721 | 61 | 2 | 0 | 1 | 61 | 1 | 61 | 6.24e-37 | 123 |
| Msa1154950 | AT4G11880.1 | 96.721 | 61 | 2 | 0 | 1 | 61 | 1 | 61 | 6.24e-37 | 123 |
| Msa1154950 | AT2G45660.1 | 84.507 | 71 | 6 | 1 | 1 | 71 | 1 | 66 | 1.16e-36 | 122 |
| Msa1154950 | AT4G22950.2 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 1.81e-36 | 120 |
| Msa1154950 | AT4G22950.3 | 93.443 | 61 | 4 | 0 | 1 | 61 | 1 | 61 | 1.13e-35 | 120 |
| Msa1154950 | AT4G22950.1 | 93.443 | 61 | 4 | 0 | 1 | 61 | 1 | 61 | 1.13e-35 | 120 |
| Msa1154950 | AT5G62165.6 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.08e-32 | 110 |
| Msa1154950 | AT5G62165.9 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.08e-32 | 110 |
| Msa1154950 | AT5G62165.7 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.08e-32 | 110 |
| Msa1154950 | AT5G62165.8 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.08e-32 | 110 |
| Msa1154950 | AT5G62165.13 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.08e-32 | 110 |
| Msa1154950 | AT5G62165.14 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.22e-32 | 108 |
| Msa1154950 | AT5G62165.17 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.28e-32 | 110 |
| Msa1154950 | AT5G62165.12 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.28e-32 | 110 |
| Msa1154950 | AT5G62165.11 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 1.28e-32 | 110 |
| Msa1154950 | AT5G62165.10 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 7.25e-32 | 109 |
| Msa1154950 | AT5G62165.4 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 7.25e-32 | 109 |
| Msa1154950 | AT5G62165.3 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 7.36e-32 | 110 |
| Msa1154950 | AT5G62165.1 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 7.36e-32 | 110 |
| Msa1154950 | AT5G62165.2 | 85.000 | 60 | 9 | 0 | 1 | 60 | 1 | 60 | 7.36e-32 | 110 |
| Msa1154950 | AT2G45650.1 | 83.051 | 59 | 10 | 0 | 1 | 59 | 1 | 59 | 1.35e-28 | 102 |
| Msa1154950 | AT2G03710.3 | 78.333 | 60 | 13 | 0 | 1 | 60 | 1 | 60 | 1.42e-28 | 101 |
| Msa1154950 | AT4G09960.2 | 75.000 | 60 | 15 | 0 | 1 | 60 | 1 | 60 | 2.75e-28 | 101 |
| Msa1154950 | AT4G09960.6 | 75.000 | 60 | 15 | 0 | 1 | 60 | 2 | 61 | 3.46e-28 | 101 |
| Msa1154950 | AT4G09960.1 | 75.000 | 60 | 15 | 0 | 1 | 60 | 1 | 60 | 3.57e-28 | 101 |
| Msa1154950 | AT5G15800.1 | 77.419 | 62 | 14 | 0 | 1 | 62 | 1 | 62 | 3.99e-28 | 101 |
| Msa1154950 | AT4G09960.5 | 75.000 | 60 | 15 | 0 | 1 | 60 | 11 | 70 | 4.98e-28 | 100 |
| Msa1154950 | AT1G24260.3 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 6.11e-28 | 100 |
| Msa1154950 | AT2G03710.2 | 78.333 | 60 | 13 | 0 | 1 | 60 | 1 | 60 | 7.06e-28 | 100 |
| Msa1154950 | AT5G15800.2 | 77.419 | 62 | 14 | 0 | 1 | 62 | 1 | 62 | 7.39e-28 | 101 |
| Msa1154950 | AT1G24260.1 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 7.60e-28 | 100 |
| Msa1154950 | AT2G03710.1 | 78.333 | 60 | 13 | 0 | 1 | 60 | 1 | 60 | 7.60e-28 | 100 |
| Msa1154950 | AT1G24260.2 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 7.67e-28 | 100 |
| Msa1154950 | AT4G09960.3 | 75.000 | 60 | 15 | 0 | 1 | 60 | 27 | 86 | 9.75e-28 | 100 |
| Msa1154950 | AT4G18960.1 | 76.271 | 59 | 14 | 0 | 3 | 61 | 19 | 77 | 2.46e-27 | 99.8 |
| Msa1154950 | AT3G02310.2 | 72.581 | 62 | 17 | 0 | 1 | 62 | 1 | 62 | 2.95e-27 | 98.2 |
| Msa1154950 | AT4G09960.4 | 75.000 | 60 | 15 | 0 | 1 | 60 | 96 | 155 | 3.17e-27 | 100 |
| Msa1154950 | AT2G42830.2 | 73.770 | 61 | 16 | 0 | 3 | 63 | 18 | 78 | 3.23e-27 | 99.0 |
| Msa1154950 | AT2G42830.1 | 73.770 | 61 | 16 | 0 | 3 | 63 | 18 | 78 | 3.42e-27 | 99.0 |
| Msa1154950 | AT3G58780.1 | 73.770 | 61 | 16 | 0 | 3 | 63 | 18 | 78 | 4.96e-27 | 98.6 |
| Msa1154950 | AT3G58780.5 | 73.770 | 61 | 16 | 0 | 3 | 63 | 24 | 84 | 5.64e-27 | 98.6 |
| Msa1154950 | AT3G58780.2 | 75.862 | 58 | 14 | 0 | 3 | 60 | 18 | 75 | 6.32e-27 | 98.2 |
| Msa1154950 | AT3G58780.4 | 73.770 | 61 | 16 | 0 | 3 | 63 | 18 | 78 | 9.03e-27 | 98.6 |
| Msa1154950 | AT3G57390.3 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 1.07e-26 | 97.4 |
| Msa1154950 | AT5G51860.2 | 75.000 | 60 | 15 | 0 | 1 | 60 | 1 | 60 | 1.08e-26 | 96.7 |
| Msa1154950 | AT3G58780.3 | 75.862 | 58 | 14 | 0 | 3 | 60 | 18 | 75 | 1.15e-26 | 98.2 |
| Msa1154950 | AT3G57230.2 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 1.32e-26 | 94.7 |
| Msa1154950 | AT5G51860.1 | 75.000 | 60 | 15 | 0 | 1 | 60 | 1 | 60 | 1.40e-26 | 96.7 |
| Msa1154950 | AT3G57390.1 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 2.16e-26 | 97.1 |
| Msa1154950 | AT5G51870.2 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 2.88e-26 | 94.7 |
| Msa1154950 | AT3G57230.1 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 4.35e-26 | 95.9 |
| Msa1154950 | AT3G57230.4 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 4.35e-26 | 95.9 |
| Msa1154950 | AT3G02310.1 | 72.581 | 62 | 17 | 0 | 1 | 62 | 1 | 62 | 6.92e-26 | 95.9 |
| Msa1154950 | AT5G13790.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 7.49e-26 | 95.9 |
| Msa1154950 | AT5G13790.2 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 7.57e-26 | 96.3 |
| Msa1154950 | AT5G51870.1 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 7.75e-26 | 94.7 |
| Msa1154950 | AT5G51870.5 | 73.333 | 60 | 16 | 0 | 1 | 60 | 24 | 83 | 8.33e-26 | 94.4 |
| Msa1154950 | AT3G61120.1 | 76.271 | 59 | 14 | 0 | 1 | 59 | 1 | 59 | 8.85e-26 | 95.5 |
| Msa1154950 | AT5G60910.1 | 70.769 | 65 | 18 | 1 | 1 | 64 | 1 | 65 | 1.39e-25 | 94.7 |
| Msa1154950 | AT5G51870.4 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 1.65e-25 | 94.0 |
| Msa1154950 | AT5G51870.3 | 73.333 | 60 | 16 | 0 | 1 | 60 | 11 | 70 | 2.39e-25 | 94.0 |
| Msa1154950 | AT1G69120.2 | 70.968 | 62 | 17 | 1 | 1 | 61 | 1 | 62 | 3.65e-25 | 93.6 |
| Msa1154950 | AT3G30260.1 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 5.50e-25 | 93.6 |
| Msa1154950 | AT1G69120.1 | 70.968 | 62 | 17 | 1 | 1 | 61 | 1 | 62 | 9.78e-25 | 92.8 |
| Msa1154950 | AT1G71692.1 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1 | 59 | 1.58e-24 | 91.3 |
| Msa1154950 | AT1G26310.1 | 70.968 | 62 | 17 | 1 | 1 | 61 | 1 | 62 | 2.35e-24 | 92.0 |
| Msa1154950 | AT2G22540.3 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 4.31e-24 | 90.9 |
| Msa1154950 | AT2G22540.1 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 4.31e-24 | 90.9 |
| Msa1154950 | AT4G37940.4 | 68.852 | 61 | 19 | 0 | 1 | 61 | 1 | 61 | 4.98e-24 | 90.1 |
| Msa1154950 | AT4G37940.1 | 68.852 | 61 | 19 | 0 | 1 | 61 | 1 | 61 | 5.46e-24 | 90.5 |
| Msa1154950 | AT4G37940.3 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 6.01e-24 | 89.0 |
| Msa1154950 | AT2G14210.1 | 68.852 | 61 | 19 | 0 | 1 | 61 | 1 | 61 | 6.28e-24 | 90.5 |
| Msa1154950 | AT2G14210.2 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 7.27e-24 | 90.1 |
| Msa1154950 | AT4G24540.1 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 2.18e-23 | 88.6 |
| Msa1154950 | AT5G10140.2 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1 | 59 | 1.01e-22 | 85.5 |
| Msa1154950 | AT5G10140.4 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1 | 59 | 1.47e-22 | 85.5 |
| Msa1154950 | AT5G10140.3 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1 | 59 | 1.79e-22 | 85.5 |
| Msa1154950 | AT5G10140.1 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1 | 59 | 1.90e-22 | 85.5 |
| Msa1154950 | AT2G22540.2 | 65.079 | 63 | 22 | 0 | 1 | 63 | 1 | 63 | 2.43e-22 | 86.3 |
| Msa1154950 | AT5G20240.2 | 66.667 | 57 | 19 | 0 | 1 | 57 | 1 | 57 | 7.20e-22 | 82.8 |
| Msa1154950 | AT2G22630.1 | 65.574 | 61 | 21 | 0 | 1 | 61 | 1 | 61 | 8.03e-22 | 84.7 |
| Msa1154950 | AT2G22630.2 | 65.574 | 61 | 21 | 0 | 1 | 61 | 1 | 61 | 8.03e-22 | 84.7 |
| Msa1154950 | AT5G20240.1 | 66.667 | 57 | 19 | 0 | 1 | 57 | 1 | 57 | 2.77e-21 | 82.8 |
| Msa1154950 | AT5G23260.3 | 63.492 | 63 | 23 | 0 | 1 | 63 | 1 | 63 | 4.42e-21 | 83.2 |
| Msa1154950 | AT5G23260.2 | 63.492 | 63 | 23 | 0 | 1 | 63 | 1 | 63 | 9.16e-21 | 82.4 |
| Msa1154950 | AT5G65070.4 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 9.95e-21 | 80.1 |
| Msa1154950 | AT3G54340.1 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 1.41e-20 | 81.6 |
| Msa1154950 | AT5G23260.1 | 63.492 | 63 | 23 | 0 | 1 | 63 | 17 | 79 | 2.08e-20 | 81.6 |
| Msa1154950 | AT5G23260.4 | 63.492 | 63 | 23 | 0 | 1 | 63 | 17 | 79 | 2.28e-20 | 81.6 |
| Msa1154950 | AT5G65070.1 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 3.33e-20 | 80.1 |
| Msa1154950 | AT1G22130.1 | 67.241 | 58 | 19 | 0 | 1 | 58 | 1 | 58 | 3.79e-20 | 82.0 |
| Msa1154950 | AT1G77980.1 | 65.517 | 58 | 20 | 0 | 1 | 58 | 1 | 58 | 5.92e-20 | 81.3 |
| Msa1154950 | AT5G65070.5 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 6.82e-20 | 79.3 |
| Msa1154950 | AT5G65070.2 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 8.17e-20 | 79.7 |
| Msa1154950 | AT5G65070.3 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 1.23e-19 | 79.0 |
| Msa1154950 | AT5G65050.2 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 6.41e-19 | 76.3 |
| Msa1154950 | AT5G65050.1 | 47.561 | 82 | 36 | 2 | 1 | 76 | 1 | 81 | 1.33e-18 | 75.5 |
| Msa1154950 | AT5G65050.5 | 47.561 | 82 | 36 | 2 | 1 | 76 | 1 | 81 | 1.48e-18 | 75.5 |
| Msa1154950 | AT5G65050.3 | 47.561 | 82 | 36 | 2 | 1 | 76 | 1 | 81 | 1.63e-18 | 75.5 |
| Msa1154950 | AT1G77950.3 | 58.621 | 58 | 24 | 0 | 1 | 58 | 1 | 58 | 7.36e-18 | 74.7 |
| Msa1154950 | AT1G77950.2 | 58.621 | 58 | 24 | 0 | 1 | 58 | 1 | 58 | 7.36e-18 | 74.7 |
| Msa1154950 | AT1G77950.1 | 58.621 | 58 | 24 | 0 | 1 | 58 | 1 | 58 | 7.36e-18 | 74.7 |
| Msa1154950 | AT1G77950.4 | 58.621 | 58 | 24 | 0 | 1 | 58 | 1 | 58 | 7.36e-18 | 74.7 |
| Msa1154950 | AT5G65080.2 | 61.905 | 63 | 23 | 1 | 1 | 63 | 8 | 69 | 9.26e-18 | 73.6 |
| Msa1154950 | AT4G37435.1 | 59.649 | 57 | 23 | 0 | 1 | 57 | 1 | 57 | 2.15e-17 | 72.4 |
| Msa1154950 | AT5G65080.3 | 61.017 | 59 | 23 | 0 | 1 | 59 | 8 | 66 | 2.84e-17 | 72.0 |
| Msa1154950 | AT5G65060.3 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 3.82e-17 | 71.6 |
| Msa1154950 | AT1G31140.2 | 50.746 | 67 | 33 | 0 | 1 | 67 | 1 | 67 | 4.67e-17 | 72.0 |
| Msa1154950 | AT5G65060.2 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 4.77e-17 | 71.2 |
| Msa1154950 | AT1G31140.1 | 50.746 | 67 | 33 | 0 | 1 | 67 | 1 | 67 | 4.92e-17 | 72.0 |
| Msa1154950 | AT5G65060.1 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 5.02e-17 | 71.6 |
| Msa1154950 | AT3G66656.1 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 5.49e-16 | 68.6 |
| Msa1154950 | AT1G01530.1 | 56.364 | 55 | 24 | 0 | 3 | 57 | 8 | 62 | 7.06e-16 | 69.3 |
| Msa1154950 | AT1G77080.5 | 59.677 | 62 | 25 | 0 | 1 | 62 | 1 | 62 | 8.91e-16 | 67.8 |
| Msa1154950 | AT1G77080.11 | 59.677 | 62 | 25 | 0 | 1 | 62 | 1 | 62 | 1.01e-15 | 67.8 |
| Msa1154950 | AT1G18750.4 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 1.12e-15 | 70.1 |
| Msa1154950 | AT1G18750.1 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 1.17e-15 | 70.1 |
| Msa1154950 | AT1G18750.3 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 1.19e-15 | 70.1 |
| Msa1154950 | AT2G34440.1 | 50.000 | 58 | 29 | 0 | 1 | 58 | 1 | 58 | 1.33e-15 | 67.4 |
| Msa1154950 | AT1G77080.4 | 59.677 | 62 | 25 | 0 | 1 | 62 | 1 | 62 | 1.96e-15 | 67.4 |
| Msa1154950 | AT4G36590.1 | 58.182 | 55 | 23 | 0 | 3 | 57 | 8 | 62 | 4.10e-15 | 67.4 |
| Msa1154950 | AT1G77080.8 | 59.677 | 62 | 25 | 0 | 1 | 62 | 1 | 62 | 5.36e-15 | 66.6 |
| Msa1154950 | AT2G03060.3 | 46.479 | 71 | 35 | 1 | 1 | 71 | 1 | 68 | 6.84e-15 | 67.8 |
| Msa1154950 | AT2G03060.7 | 46.479 | 71 | 35 | 1 | 1 | 71 | 1 | 68 | 6.84e-15 | 67.8 |
| Msa1154950 | AT2G03060.1 | 46.479 | 71 | 35 | 1 | 1 | 71 | 1 | 68 | 6.84e-15 | 67.8 |
| Msa1154950 | AT1G77080.12 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 7.38e-15 | 65.1 |
| Msa1154950 | AT2G03060.2 | 46.479 | 71 | 35 | 1 | 1 | 71 | 1 | 68 | 1.02e-14 | 67.4 |
| Msa1154950 | AT1G77080.2 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 1.60e-14 | 65.1 |
| Msa1154950 | AT5G60440.1 | 54.545 | 55 | 25 | 0 | 3 | 57 | 8 | 62 | 2.08e-14 | 65.9 |
| Msa1154950 | AT1G69540.2 | 52.830 | 53 | 25 | 0 | 1 | 53 | 1 | 53 | 7.41e-14 | 64.7 |
| Msa1154950 | AT1G69540.1 | 52.830 | 53 | 25 | 0 | 1 | 53 | 1 | 53 | 9.28e-14 | 64.3 |
| Msa1154950 | AT2G24840.1 | 54.545 | 55 | 25 | 0 | 3 | 57 | 64 | 118 | 2.09e-13 | 63.2 |
| Msa1154950 | AT1G47760.1 | 39.506 | 81 | 44 | 1 | 1 | 76 | 1 | 81 | 2.57e-13 | 61.6 |
| Msa1154950 | AT1G65360.1 | 48.214 | 56 | 29 | 0 | 3 | 58 | 8 | 63 | 3.43e-13 | 62.0 |
| Msa1154950 | AT1G72350.1 | 54.386 | 57 | 26 | 0 | 3 | 59 | 44 | 100 | 1.14e-12 | 60.5 |
| Msa1154950 | AT3G04100.1 | 50.000 | 54 | 27 | 0 | 5 | 58 | 17 | 70 | 2.40e-12 | 59.7 |
| Msa1154950 | AT2G26320.1 | 45.763 | 59 | 32 | 0 | 1 | 59 | 17 | 75 | 1.56e-11 | 55.5 |
| Msa1154950 | AT1G28460.1 | 50.877 | 57 | 28 | 0 | 3 | 59 | 9 | 65 | 2.49e-11 | 56.6 |
| Msa1154950 | AT1G29962.1 | 53.846 | 52 | 24 | 0 | 8 | 59 | 14 | 65 | 6.13e-11 | 55.5 |
Find 12 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGAGAAATTAATTAAAA+TGG | 0.257979 | 7_4:-42728162 | Msa1154950:intron |
| TTAATAAGAGATTGAGATAA+AGG | 0.323923 | 7_4:+42728673 | None:intergenic |
| TCTGAGGTTGTGACTAGAAA+AGG | 0.371239 | 7_4:+42728624 | None:intergenic |
| TATGCATTATACTGTACGTT+TGG | 0.399774 | 7_4:-42724787 | Msa1154950:CDS |
| TTATACTGTACGTTTGGCTT+CGG | 0.410441 | 7_4:-42724781 | Msa1154950:CDS |
| ACTAGAAAAGGGAAGAAAGA+AGG | 0.495496 | 7_4:+42728636 | None:intergenic |
| CTGAGGTTGTGACTAGAAAA+GGG | 0.501914 | 7_4:+42728625 | None:intergenic |
| TACTCAAGTAGTTGTTGAGA+AGG | 0.506051 | 7_4:+42728568 | None:intergenic |
| ACTCAAGTAGTTGTTGAGAA+GGG | 0.551378 | 7_4:+42728569 | None:intergenic |
| ATAGGTGGTTGAATAAGGAA+AGG | 0.616339 | 7_4:-42728743 | None:intergenic |
| CAGTATAATGCATATTCTGA+CGG | 0.617725 | 7_4:+42724796 | None:intergenic |
| AAATTAATTAAAATGGTGAG+AGG | 0.642503 | 7_4:-42728155 | Msa1154950:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAAAATAATTTA+GGG | + | chr7_4:42725563-42725582 | None:intergenic | 0.0% |
| !! | AAAAAATTAAAAAATAATTT+AGG | + | chr7_4:42725564-42725583 | None:intergenic | 0.0% |
| !! | TTATATTTAATTATAATAAT+AGG | - | chr7_4:42727284-42727303 | Msa1154950:intron | 0.0% |
| !!! | AATTAAATATTATTTTTTTT+GGG | + | chr7_4:42727895-42727914 | None:intergenic | 0.0% |
| !!! | AAATTAAATATTATTTTTTT+TGG | + | chr7_4:42727896-42727915 | None:intergenic | 0.0% |
| !! | ATTAAATTTATTTAAATTAT+AGG | - | chr7_4:42727916-42727935 | Msa1154950:intron | 0.0% |
| !!! | TAAATAATTTTAGTTTCAAA+TGG | - | chr7_4:42725130-42725149 | Msa1154950:intron | 10.0% |
| !! | TGTGTATAAATATATAAAAT+AGG | - | chr7_4:42725753-42725772 | Msa1154950:intron | 10.0% |
| !! | GTGTATAAATATATAAAATA+GGG | - | chr7_4:42725754-42725773 | Msa1154950:intron | 10.0% |
| !! | AATAATAATAATCATTTCAT+TGG | + | chr7_4:42726521-42726540 | None:intergenic | 10.0% |
| !! | AATAATAATATATAACTGTT+TGG | + | chr7_4:42727606-42727625 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTGTTTCTTATTT+AGG | + | chr7_4:42725022-42725041 | None:intergenic | 15.0% |
| !! | GATAGAGAAATTAATTAAAA+TGG | - | chr7_4:42725344-42725363 | Msa1154950:intron | 15.0% |
| !! | TATATATTTATACACACATA+TGG | + | chr7_4:42725749-42725768 | None:intergenic | 15.0% |
| !! | TTGTAATTGCTATAATAATA+AGG | + | chr7_4:42726714-42726733 | None:intergenic | 15.0% |
| !!! | TTTTTTCATCCAAAAAATAA+TGG | + | chr7_4:42726979-42726998 | None:intergenic | 15.0% |
| !!! | AATACCCTTATTTTATTTTT+TGG | + | chr7_4:42727134-42727153 | None:intergenic | 15.0% |
| !! | AAAAAAGAAACAAATTTAGT+TGG | + | chr7_4:42727468-42727487 | None:intergenic | 15.0% |
| !! | ATTATTAGTTCACATTATAT+TGG | - | chr7_4:42727620-42727639 | Msa1154950:intron | 15.0% |
| !!! | TTTTTTACTGAAAATAGTAA+AGG | + | chr7_4:42727821-42727840 | None:intergenic | 15.0% |
| !!! | TCTAAACAATAACTTTTTAT+TGG | - | chr7_4:42728046-42728065 | Msa1154950:CDS | 15.0% |
| !! | TTAATAAGAGATTGAGATAA+AGG | + | chr7_4:42724836-42724855 | None:intergenic | 20.0% |
| !! | CAAAGTAGCAATATAAATTA+TGG | + | chr7_4:42725066-42725085 | None:intergenic | 20.0% |
| !! | AAATTAATTAAAATGGTGAG+AGG | - | chr7_4:42725351-42725370 | Msa1154950:intron | 20.0% |
| !!! | TCACATACTTTTATAGTTTA+TGG | + | chr7_4:42725996-42726015 | None:intergenic | 20.0% |
| !! | TACAATATTCTAATTGATTG+AGG | - | chr7_4:42726047-42726066 | Msa1154950:intron | 20.0% |
| !! | AGCAAAAATATATAGTGAAA+AGG | - | chr7_4:42726390-42726409 | Msa1154950:intron | 20.0% |
| !! | ATAATAATCATTTCATTGGT+GGG | + | chr7_4:42726517-42726536 | None:intergenic | 20.0% |
| !! | AATAATAATCATTTCATTGG+TGG | + | chr7_4:42726518-42726537 | None:intergenic | 20.0% |
| !!! | AAGTTATATATCAGTTTTGT+AGG | + | chr7_4:42726670-42726689 | None:intergenic | 20.0% |
| !! | AAACATCAAATAAAAAGGAA+TGG | + | chr7_4:42727217-42727236 | None:intergenic | 20.0% |
| !! | AGCTAAAACATCAAATAAAA+AGG | + | chr7_4:42727212-42727231 | None:intergenic | 20.0% |
| !!! | ATTTGATGTTTTAGAATTGT+TGG | - | chr7_4:42726851-42726870 | Msa1154950:intron | 20.0% |
| !! | TATACAATTGAAAAAGTGAA+CGG | + | chr7_4:42726950-42726969 | None:intergenic | 20.0% |
| !! | AATGAAAATAGTTGTAGATT+TGG | + | chr7_4:42727162-42727181 | None:intergenic | 20.0% |
| !! | AGCTAAAACATCAAATAAAA+AGG | - | chr7_4:42727212-42727231 | Msa1154950:intron | 20.0% |
| !! | AAACATCAAATAAAAAGGAA+TGG | - | chr7_4:42727217-42727236 | Msa1154950:intron | 20.0% |
| !! | TTCTTCTTCATATATATGTT+TGG | - | chr7_4:42727489-42727508 | Msa1154950:intron | 20.0% |
| !! | TTCAAAAGAGTTATCTAATA+TGG | - | chr7_4:42727738-42727757 | Msa1154950:intron | 20.0% |
| !!! | AAAATATTTTTGCTCTCATA+GGG | + | chr7_4:42728141-42728160 | None:intergenic | 20.0% |
| !! | GATGTTTTTCATCTTTGATT+TGG | - | chr7_4:42725192-42725211 | Msa1154950:intron | 25.0% |
| ! | ACATTCTCAAAAAGAAGAAA+TGG | - | chr7_4:42725420-42725439 | Msa1154950:intron | 25.0% |
| !! | AATTCATAAAGTTTTCCTCT+TGG | + | chr7_4:42725513-42725532 | None:intergenic | 25.0% |
| ! | ATAATTTCATGCACACTTAT+TGG | - | chr7_4:42725713-42725732 | Msa1154950:intron | 25.0% |
| ! | TCATAATTAATTAACCACAG+TGG | - | chr7_4:42725815-42725834 | Msa1154950:intron | 25.0% |
| ! | AAAATCCTGATTACTTTAAG+AGG | - | chr7_4:42725949-42725968 | Msa1154950:intron | 25.0% |
| !! | AAATCCTGATTACTTTAAGA+GGG | - | chr7_4:42725950-42725969 | Msa1154950:intron | 25.0% |
| !! | ACTTTTATAGTTTATGGCTA+GGG | + | chr7_4:42725990-42726009 | None:intergenic | 25.0% |
| !! | TACTTTTATAGTTTATGGCT+AGG | + | chr7_4:42725991-42726010 | None:intergenic | 25.0% |
| ! | AATATTCTAATTGATTGAGG+TGG | - | chr7_4:42726050-42726069 | Msa1154950:intron | 25.0% |
| !! | TGTAAACAAGTGAAGTTTTT+CGG | - | chr7_4:42726278-42726297 | Msa1154950:intron | 25.0% |
| ! | TATTAATGAGTATCAGGATT+GGG | + | chr7_4:42726370-42726389 | None:intergenic | 25.0% |
| ! | TTATTAATGAGTATCAGGAT+TGG | + | chr7_4:42726371-42726390 | None:intergenic | 25.0% |
| ! | TTTGCTTATTAATGAGTATC+AGG | + | chr7_4:42726376-42726395 | None:intergenic | 25.0% |
| ! | ATCAAATAAAAAGGAATGGA+GGG | + | chr7_4:42727221-42727240 | None:intergenic | 25.0% |
| ! | AACGTAATTAATTGTGACAA+GGG | + | chr7_4:42726896-42726915 | None:intergenic | 25.0% |
| ! | TAACGTAATTAATTGTGACA+AGG | + | chr7_4:42726897-42726916 | None:intergenic | 25.0% |
| ! | TTCATCCAAAAAATAATGGT+GGG | + | chr7_4:42726975-42726994 | None:intergenic | 25.0% |
| ! | TTTCATCCAAAAAATAATGG+TGG | + | chr7_4:42726976-42726995 | None:intergenic | 25.0% |
| ! | TCCAAATCTTCTTAAATGAA+CGG | + | chr7_4:42727074-42727093 | None:intergenic | 25.0% |
| !!! | ATTTTGAGAAGAAAAAAGCA+AGG | - | chr7_4:42727094-42727113 | Msa1154950:intron | 25.0% |
| ! | GCAGCCAAAAAATAAAATAA+GGG | - | chr7_4:42727127-42727146 | Msa1154950:intron | 25.0% |
| ! | ATCAAATAAAAAGGAATGGA+GGG | - | chr7_4:42727221-42727240 | Msa1154950:intron | 25.0% |
| ! | TCTATATATTGAGATGTCTA+AGG | - | chr7_4:42727393-42727412 | Msa1154950:intron | 25.0% |
| ! | CTATATATTGAGATGTCTAA+GGG | - | chr7_4:42727394-42727413 | Msa1154950:intron | 25.0% |
| ! | GAATTGAATATTCGGTTTAA+TGG | + | chr7_4:42727442-42727461 | None:intergenic | 25.0% |
| !!! | GTTGGTTTGAATTGAATATT+CGG | + | chr7_4:42727450-42727469 | None:intergenic | 25.0% |
| ! | ATTATTGTGTGTGTCTAATA+TGG | - | chr7_4:42727768-42727787 | Msa1154950:intron | 25.0% |
| !!! | TCATTTTGATCACTTATAAG+AGG | + | chr7_4:42727795-42727814 | None:intergenic | 25.0% |
| ! | TTAAATTATAGGTCCACATT+TGG | - | chr7_4:42727927-42727946 | Msa1154950:intron | 25.0% |
| ! | TAAATTATAGGTCCACATTT+GGG | - | chr7_4:42727928-42727947 | Msa1154950:intron | 25.0% |
| ! | GTAAATAGGACTATCTAATA+TGG | + | chr7_4:42727960-42727979 | None:intergenic | 25.0% |
| !! | GAATTTTATGATCTTTTGTC+AGG | + | chr7_4:42728023-42728042 | None:intergenic | 25.0% |
| !!! | GGTTAGTTTAATTCACTTTT+TGG | + | chr7_4:42728089-42728108 | None:intergenic | 25.0% |
| ! | GAAAAGAAATGACATCTATA+AGG | + | chr7_4:42728119-42728138 | None:intergenic | 25.0% |
| !!! | GAAAATATTTTTGCTCTCAT+AGG | + | chr7_4:42728142-42728161 | None:intergenic | 25.0% |
| ! | CCACTTATATCAGTAAATAT+GGG | + | chr7_4:42728205-42728224 | None:intergenic | 25.0% |
| ! | CCATATTTACTGATATAAGT+GGG | - | chr7_4:42728203-42728222 | Msa1154950:intron | 25.0% |
| !! | TTTTTACCGATGAAAAGTTT+AGG | + | chr7_4:42728534-42728553 | None:intergenic | 25.0% |
| ! | CAGTTCTTTTCTCTCTTTTT+GGG | - | chr7_4:42724805-42724824 | Msa1154950:CDS | 30.0% |
| ! | TCTGATTTTACACACGAAAT+TGG | + | chr7_4:42724914-42724933 | None:intergenic | 30.0% |
| ATATGAGCTAGTTCATTACA+TGG | + | chr7_4:42725242-42725261 | None:intergenic | 30.0% | |
| !! | TTTATGAATTTTCAAGCTCC+TGG | - | chr7_4:42725523-42725542 | Msa1154950:intron | 30.0% |
| ! | AGGGTATTTAATTACTTACC+AGG | + | chr7_4:42725544-42725563 | None:intergenic | 30.0% |
| CTTAACTATAGCATATGCTA+TGG | - | chr7_4:42725655-42725674 | Msa1154950:intron | 30.0% | |
| CAAATGATATAGCATGAAGA+GGG | + | chr7_4:42725683-42725702 | None:intergenic | 30.0% | |
| ACAAATGATATAGCATGAAG+AGG | + | chr7_4:42725684-42725703 | None:intergenic | 30.0% | |
| !!! | ACTTTTGAGGTTACAGAAAA+AGG | + | chr7_4:42725888-42725907 | None:intergenic | 30.0% |
| TTATCCCTCTTAAAGTAATC+AGG | + | chr7_4:42725957-42725976 | None:intergenic | 30.0% | |
| TGAATATGTCTCAAGTAGTT+CGG | - | chr7_4:42726149-42726168 | Msa1154950:intron | 30.0% | |
| CTTAATTTCTTTACTAGGGT+GGG | - | chr7_4:42726302-42726321 | Msa1154950:intron | 30.0% | |
| TTAATTTCTTTACTAGGGTG+GGG | - | chr7_4:42726303-42726322 | Msa1154950:intron | 30.0% | |
| ! | AACGTTTGGAATCTAATCAA+GGG | - | chr7_4:42726337-42726356 | Msa1154950:intron | 30.0% |
| TACTTGATTTCTTGAGTAGT+GGG | - | chr7_4:42726418-42726437 | Msa1154950:intron | 30.0% | |
| CATCAAATAAAAAGGAATGG+AGG | + | chr7_4:42727220-42727239 | None:intergenic | 30.0% | |
| AATTGTGACAAGGGTAAAAT+TGG | + | chr7_4:42726887-42726906 | None:intergenic | 30.0% | |
| !!! | ATACTCCCACCATTATTTTT+TGG | - | chr7_4:42726967-42726986 | Msa1154950:intron | 30.0% |
| AATCTTCTTAAATGAACGGT+GGG | + | chr7_4:42727070-42727089 | None:intergenic | 30.0% | |
| AAATCTTCTTAAATGAACGG+TGG | + | chr7_4:42727071-42727090 | None:intergenic | 30.0% | |
| ACCGTTCATTTAAGAAGATT+TGG | - | chr7_4:42727070-42727089 | Msa1154950:intron | 30.0% | |
| AAAAAAGCAAGGAGTAATCA+TGG | - | chr7_4:42727105-42727124 | Msa1154950:intron | 30.0% | |
| GGCAGCCAAAAAATAAAATA+AGG | - | chr7_4:42727126-42727145 | Msa1154950:intron | 30.0% | |
| AGCTGATTACACACATATTA+AGG | + | chr7_4:42727196-42727215 | None:intergenic | 30.0% | |
| CATCAAATAAAAAGGAATGG+AGG | - | chr7_4:42727220-42727239 | Msa1154950:intron | 30.0% | |
| !!! | TCTTGTTTTGAATGTAGTCA+AGG | + | chr7_4:42727358-42727377 | None:intergenic | 30.0% |
| ATTCGGTTTAATGGAATCAT+TGG | + | chr7_4:42727433-42727452 | None:intergenic | 30.0% | |
| ACATAAGCTACAATGGAAAA+AGG | + | chr7_4:42727690-42727709 | None:intergenic | 30.0% | |
| AACATGTACATAAGCTACAA+TGG | + | chr7_4:42727697-42727716 | None:intergenic | 30.0% | |
| TAGACACACACAATAATAAG+AGG | + | chr7_4:42727765-42727784 | None:intergenic | 30.0% | |
| !! | GAGTTGATTTGGTAGTAAAT+AGG | + | chr7_4:42727974-42727993 | None:intergenic | 30.0% |
| CCCATATTTACTGATATAAG+TGG | - | chr7_4:42728202-42728221 | Msa1154950:intron | 30.0% | |
| CCCACTTATATCAGTAAATA+TGG | + | chr7_4:42728206-42728225 | None:intergenic | 30.0% | |
| ! | AACTCACCTAAACTTTTCAT+CGG | - | chr7_4:42728525-42728544 | Msa1154950:intron | 30.0% |
| AGAGATCTTATACTGTTTCA+TGG | - | chr7_4:42728597-42728616 | Msa1154950:five_prime_UTR | 30.0% | |
| GAGATCTTATACTGTTTCAT+GGG | - | chr7_4:42728598-42728617 | Msa1154950:five_prime_UTR | 30.0% | |
| CAGTATAATGCATATTCTGA+CGG | + | chr7_4:42728713-42728732 | None:intergenic | 30.0% | |
| TATGCATTATACTGTACGTT+TGG | - | chr7_4:42728719-42728738 | Msa1154950:five_prime_UTR | 30.0% | |
| ! | GCAGTTCTTTTCTCTCTTTT+TGG | - | chr7_4:42724804-42724823 | Msa1154950:CDS | 35.0% |
| ACTAGAAAAGGGAAGAAAGA+AGG | + | chr7_4:42724873-42724892 | None:intergenic | 35.0% | |
| ACGAAATTGGCAAAAATCTG+AGG | + | chr7_4:42724901-42724920 | None:intergenic | 35.0% | |
| ACTCAAGTAGTTGTTGAGAA+GGG | + | chr7_4:42724940-42724959 | None:intergenic | 35.0% | |
| TACTCAAGTAGTTGTTGAGA+AGG | + | chr7_4:42724941-42724960 | None:intergenic | 35.0% | |
| ! | CTTATCATCTTTTCTCCAAG+AGG | - | chr7_4:42725495-42725514 | Msa1154950:intron | 35.0% |
| ! | TGTAACCTCAAAAGTACAGT+GGG | - | chr7_4:42725893-42725912 | Msa1154950:intron | 35.0% |
| TCGGCCTTAATTTCTTTACT+AGG | - | chr7_4:42726297-42726316 | Msa1154950:intron | 35.0% | |
| CGGCCTTAATTTCTTTACTA+GGG | - | chr7_4:42726298-42726317 | Msa1154950:intron | 35.0% | |
| CCACCCTAGTAAAGAAATTA+AGG | + | chr7_4:42726304-42726323 | None:intergenic | 35.0% | |
| CCTTAATTTCTTTACTAGGG+TGG | - | chr7_4:42726301-42726320 | Msa1154950:intron | 35.0% | |
| ! | CAACGTTTGGAATCTAATCA+AGG | - | chr7_4:42726336-42726355 | Msa1154950:intron | 35.0% |
| ! | ACGTTTGGAATCTAATCAAG+GGG | - | chr7_4:42726338-42726357 | Msa1154950:intron | 35.0% |
| GTACTTGATTTCTTGAGTAG+TGG | - | chr7_4:42726417-42726436 | Msa1154950:intron | 35.0% | |
| !! | GAGTAGTGGGTTATATATAG+AGG | - | chr7_4:42726431-42726450 | Msa1154950:intron | 35.0% |
| TTATGAGAGACGTAAGAGAA+AGG | - | chr7_4:42726465-42726484 | Msa1154950:intron | 35.0% | |
| TATGAGAGACGTAAGAGAAA+GGG | - | chr7_4:42726466-42726485 | Msa1154950:intron | 35.0% | |
| !!! | ATACTCCCACGTTCATTTTT+TGG | - | chr7_4:42727003-42727022 | Msa1154950:intron | 35.0% |
| CACTTCCAAAAAATGAACGT+GGG | + | chr7_4:42727011-42727030 | None:intergenic | 35.0% | |
| ACACTTCCAAAAAATGAACG+TGG | + | chr7_4:42727012-42727031 | None:intergenic | 35.0% | |
| ATATCCAAACCAATCGAAAC+CGG | + | chr7_4:42727543-42727562 | None:intergenic | 35.0% | |
| TGACATCTATAAGGTGTAAC+AGG | + | chr7_4:42728110-42728129 | None:intergenic | 35.0% | |
| ACCTACAAGATCGATATAAG+TGG | - | chr7_4:42728301-42728320 | Msa1154950:intron | 35.0% | |
| CCTACAAGATCGATATAAGT+GGG | - | chr7_4:42728302-42728321 | Msa1154950:intron | 35.0% | |
| ATCTCATGTTCAGTCAATGA+AGG | - | chr7_4:42728350-42728369 | Msa1154950:intron | 35.0% | |
| ! | ATAAGTTTTCACATCAGCAG+CGG | + | chr7_4:42728427-42728446 | None:intergenic | 35.0% |
| CATATGCTCTTTAAACCTTG+AGG | - | chr7_4:42728466-42728485 | Msa1154950:intron | 35.0% | |
| ! | TTATACTGTACGTTTGGCTT+CGG | - | chr7_4:42728725-42728744 | Msa1154950:five_prime_UTR | 35.0% |
| CTGAGGTTGTGACTAGAAAA+GGG | + | chr7_4:42724884-42724903 | None:intergenic | 40.0% | |
| ! | TCTGAGGTTGTGACTAGAAA+AGG | + | chr7_4:42724885-42724904 | None:intergenic | 40.0% |
| !!! | TTGTTTTTGCTGCTGCTGTT+AGG | - | chr7_4:42724971-42724990 | Msa1154950:intron | 40.0% |
| !! | ACCACAGTGGTTGATTTGAT+AGG | - | chr7_4:42725828-42725847 | Msa1154950:intron | 40.0% |
| TCCTATCAAATCAACCACTG+TGG | + | chr7_4:42725832-42725851 | None:intergenic | 40.0% | |
| !! | CAGTGGTTGATTTGATAGGA+AGG | - | chr7_4:42725832-42725851 | Msa1154950:intron | 40.0% |
| ! | CTGTAACCTCAAAAGTACAG+TGG | - | chr7_4:42725892-42725911 | Msa1154950:intron | 40.0% |
| ! | GTAACCTCAAAAGTACAGTG+GGG | - | chr7_4:42725894-42725913 | Msa1154950:intron | 40.0% |
| TCATAGACGCATTTAACGAG+TGG | - | chr7_4:42726253-42726272 | Msa1154950:intron | 40.0% | |
| CATAGACGCATTTAACGAGT+GGG | - | chr7_4:42726254-42726273 | Msa1154950:intron | 40.0% | |
| TAATGAGTATCAGGATTGGG+AGG | + | chr7_4:42726367-42726386 | None:intergenic | 40.0% | |
| ATCATTTCATTGGTGGGAAG+AGG | + | chr7_4:42726511-42726530 | None:intergenic | 40.0% | |
| !!! | CGGTTTTGATTGGTTTGGTT+CGG | + | chr7_4:42727523-42727542 | None:intergenic | 40.0% |
| CGAACCAAACCAATCAAAAC+CGG | - | chr7_4:42727521-42727540 | Msa1154950:intron | 40.0% | |
| !!! | GAAACCGGTTTTGATTGGTT+TGG | + | chr7_4:42727528-42727547 | None:intergenic | 40.0% |
| !! | CAATCGAAACCGGTTTTGAT+TGG | + | chr7_4:42727533-42727552 | None:intergenic | 40.0% |
| ! | CAATCAAAACCGGTTTCGAT+TGG | - | chr7_4:42727531-42727550 | Msa1154950:intron | 40.0% |
| ! | AAAACCGGTTTCGATTGGTT+TGG | - | chr7_4:42727536-42727555 | Msa1154950:intron | 40.0% |
| TTATAGGTCCACATTTGGGT+CGG | - | chr7_4:42727932-42727951 | Msa1154950:intron | 40.0% | |
| ! | CGATGAAGAAGGAGTTGATT+TGG | + | chr7_4:42727985-42728004 | None:intergenic | 40.0% |
| ! | CAACTCCTTCTTCATCGATT+TGG | - | chr7_4:42727988-42728007 | Msa1154950:CDS | 40.0% |
| TCGAACCAAATCGATGAAGA+AGG | + | chr7_4:42727996-42728015 | None:intergenic | 40.0% | |
| ATCTCCTGTTCAGTCAATGA+AGG | - | chr7_4:42728251-42728270 | Msa1154950:intron | 40.0% | |
| ! | TCAACCTTCATTGACTGAAC+AGG | + | chr7_4:42728258-42728277 | None:intergenic | 40.0% |
| CCCACTTATATCGATCTTGT+AGG | + | chr7_4:42728305-42728324 | None:intergenic | 40.0% | |
| AGCTAAACTCCTGATCTTGT+AGG | + | chr7_4:42728403-42728422 | None:intergenic | 40.0% | |
| ! | AGTTTAGGTGAGTTGAGCTT+CGG | + | chr7_4:42728519-42728538 | None:intergenic | 40.0% |
| TCTTTACTAGGGTGGGGTTA+AGG | - | chr7_4:42726309-42726328 | Msa1154950:intron | 45.0% | |
| CTTTACTAGGGTGGGGTTAA+GGG | - | chr7_4:42726310-42726329 | Msa1154950:intron | 45.0% | |
| GGGTTAAGGGTTTCAACGTT+TGG | - | chr7_4:42726323-42726342 | Msa1154950:intron | 45.0% | |
| AGTGTACGATGTGAGAGTAG+TGG | - | chr7_4:42727327-42727346 | Msa1154950:intron | 45.0% | |
| ATATGGAACCGACCCAAATG+TGG | + | chr7_4:42727943-42727962 | None:intergenic | 45.0% | |
| ! | GTTGACTCACCTACAAGATC+AGG | - | chr7_4:42728391-42728410 | Msa1154950:intron | 45.0% |
| !!! | ATTAAATATTATTTTTTTTG+GGG | + | chr7_4:42727894-42727913 | None:intergenic | 5.0% |
| ! | CACACCCCACTGTACTTTTG+AGG | + | chr7_4:42725901-42725920 | None:intergenic | 50.0% |
| CAAGGTTGTGTCAGACCTCA+AGG | + | chr7_4:42728484-42728503 | None:intergenic | 50.0% | |
| ! | TAGGTGAGTTGAGCTTCGGA+GGG | + | chr7_4:42728515-42728534 | None:intergenic | 50.0% |
| ! | TTAGGTGAGTTGAGCTTCGG+AGG | + | chr7_4:42728516-42728535 | None:intergenic | 50.0% |
| CTTCGGAGGGAGACTCATCA+AGG | + | chr7_4:42728502-42728521 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 42724776 | 42728752 | 42724776 | ID=Msa1154950;Name=Msa1154950 |
| chr7_4 | mRNA | 42724776 | 42728752 | 42724776 | ID=Msa1154950-mRNA-1;Parent=Msa1154950;Name=Msa1154950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231|0.5|0.66|0.66|0.5|0.33|3|0|76 |
| chr7_4 | exon | 42724776 | 42724824 | 42724776 | ID=Msa1154950-mRNA-1:exon:10605;Parent=Msa1154950-mRNA-1 |
| chr7_4 | exon | 42727984 | 42728179 | 42727984 | ID=Msa1154950-mRNA-1:exon:10604;Parent=Msa1154950-mRNA-1 |
| chr7_4 | exon | 42728536 | 42728752 | 42728536 | ID=Msa1154950-mRNA-1:exon:10603;Parent=Msa1154950-mRNA-1 |
| chr7_4 | five_prime_UTR | 42728536 | 42728752 | 42728536 | ID=Msa1154950-mRNA-1:five_prime_utr;Parent=Msa1154950-mRNA-1 |
| chr7_4 | five_prime_UTR | 42728166 | 42728179 | 42728166 | ID=Msa1154950-mRNA-1:five_prime_utr;Parent=Msa1154950-mRNA-1 |
| chr7_4 | CDS | 42727984 | 42728165 | 42727984 | ID=Msa1154950-mRNA-1:cds;Parent=Msa1154950-mRNA-1 |
| chr7_4 | CDS | 42724776 | 42724824 | 42724776 | ID=Msa1154950-mRNA-1:cds;Parent=Msa1154950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
