Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155260 | XP_003623876.2 | 96.154 | 546 | 12 | 1 | 1 | 537 | 1 | 546 | 0.0 | 1074 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155260 | sp|Q43088|RBCMT_PEA | 28.477 | 302 | 156 | 14 | 8 | 301 | 54 | 303 | 8.71e-14 | 77.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155260 | G7L2K0 | 96.154 | 546 | 12 | 1 | 1 | 537 | 1 | 546 | 0.0 | 1074 |
Gene ID | Type | Classification |
---|---|---|
Msa1155260 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155260 | MtrunA17_Chr7g0246961 | 96.154 | 546 | 12 | 1 | 1 | 537 | 1 | 546 | 0.0 | 1074 |
Msa1155260 | MtrunA17_Chr4g0042701 | 29.814 | 322 | 153 | 15 | 2 | 309 | 49 | 311 | 1.78e-15 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155260 | AT1G01920.2 | 62.000 | 550 | 187 | 6 | 1 | 534 | 3 | 546 | 0.0 | 682 |
Msa1155260 | AT1G01920.1 | 60.000 | 575 | 183 | 8 | 1 | 534 | 3 | 571 | 0.0 | 672 |
Msa1155260 | AT1G01920.5 | 62.851 | 498 | 168 | 5 | 5 | 486 | 7 | 503 | 0.0 | 628 |
Msa1155260 | AT1G01920.4 | 62.076 | 501 | 170 | 5 | 48 | 534 | 8 | 502 | 0.0 | 626 |
Msa1155260 | AT1G01920.3 | 64.103 | 429 | 137 | 5 | 5 | 417 | 7 | 434 | 0.0 | 556 |
Msa1155260 | AT1G14030.1 | 26.299 | 308 | 154 | 13 | 8 | 301 | 49 | 297 | 2.73e-11 | 66.2 |
Find 114 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCACTGCATTTAAGGTTAA+TGG | 0.142609 | 7_4:-43166940 | Msa1155260:intron |
CTAGGGCAAATTCAGTATTT+TGG | 0.177551 | 7_4:-43170038 | Msa1155260:intron |
GTCTCCATGTATCTTCTTTC+CGG | 0.213446 | 7_4:-43169212 | Msa1155260:intron |
CTTATTGTCAATTCAGTTCT+TGG | 0.216783 | 7_4:-43166459 | Msa1155260:three_prime_UTR |
GATATGCTTCCAACCACTTT+TGG | 0.251963 | 7_4:-43171477 | Msa1155260:CDS |
TGGGAGGTTTGCGGTGATTC+TGG | 0.254285 | 7_4:-43167245 | Msa1155260:CDS |
TCCATTATCCAGCAGAGTTT+TGG | 0.254544 | 7_4:+43167903 | None:intergenic |
CCCAAAACTCTGCTGGATAA+TGG | 0.262041 | 7_4:-43167904 | Msa1155260:CDS |
TCCCTTGTTGCCATAACTAA+TGG | 0.277594 | 7_4:+43168978 | None:intergenic |
CATACTGTTTGCTATCTTCC+TGG | 0.278315 | 7_4:+43166847 | None:intergenic |
TCAACTTCCCATGTTGCTAT+TGG | 0.310003 | 7_4:+43169263 | None:intergenic |
GATAATTGTCTCTCCCCTTC+AGG | 0.314552 | 7_4:+43167293 | None:intergenic |
CGAGAAATTTCCATTAGTTA+TGG | 0.330983 | 7_4:-43168988 | Msa1155260:CDS |
ATGGACCTTGAAGAGCATTC+TGG | 0.342337 | 7_4:-43166921 | Msa1155260:CDS |
ATATCGTGCAACTGAGTTAC+AGG | 0.349217 | 7_4:-43171400 | Msa1155260:intron |
CTGTTCCAGAATGCTCTTCA+AGG | 0.349550 | 7_4:+43166916 | None:intergenic |
TTCTGTCACATAAAGCTTGT+TGG | 0.356885 | 7_4:-43167317 | Msa1155260:intron |
CTGTATGGTTTCGTCATTGA+TGG | 0.361585 | 7_4:-43168297 | Msa1155260:CDS |
TCAAACAATGCTCTACATTC+TGG | 0.368765 | 7_4:+43171682 | None:intergenic |
CAGTGCAAGGAGACACTGTT+TGG | 0.372176 | 7_4:-43169680 | Msa1155260:CDS |
TAGATGTCCAGTCAGCAATA+TGG | 0.372524 | 7_4:-43167265 | Msa1155260:CDS |
TGATTGCTTCTGAAGGATAA+TGG | 0.373461 | 7_4:+43168138 | None:intergenic |
ACAAAGTTTGCAACTATAGT+TGG | 0.373492 | 7_4:-43167834 | Msa1155260:CDS |
GGAGACACTGTTTGGGTTGA+GGG | 0.388987 | 7_4:-43169672 | Msa1155260:CDS |
AACTTTCTTGCAGTGGCTAC+AGG | 0.393679 | 7_4:-43172585 | Msa1155260:intron |
TGGGTTGAGGGTCTTGTCCC+TGG | 0.398663 | 7_4:-43169660 | Msa1155260:CDS |
TGATGAACATCTTGCATCTC+AGG | 0.399499 | 7_4:+43169973 | None:intergenic |
AAAGTTTCGAGCTTTGCATC+TGG | 0.402607 | 7_4:+43172602 | None:intergenic |
AAGTACTGTGATTCCAGAAA+AGG | 0.405051 | 7_4:-43172400 | Msa1155260:CDS |
CTTCCTGGCTATCAATGATA+AGG | 0.405078 | 7_4:+43166862 | None:intergenic |
TGTAGAGCATTGTTTGAAGA+AGG | 0.407729 | 7_4:-43171676 | Msa1155260:CDS |
GGATCTTGCAATACCCTCAT+TGG | 0.414764 | 7_4:+43171715 | None:intergenic |
TGTGCTATGTGTAGTTTCCT+TGG | 0.421059 | 7_4:+43169701 | None:intergenic |
CCAAAGTGTATTTCCAAAAG+TGG | 0.431664 | 7_4:+43171464 | None:intergenic |
CAGGAACTTCTATATCTGTA+TGG | 0.433043 | 7_4:-43168312 | Msa1155260:CDS |
AGGAGACACTGTTTGGGTTG+AGG | 0.441525 | 7_4:-43169673 | Msa1155260:CDS |
TAGTTTCATACAAATTCAAC+AGG | 0.442700 | 7_4:+43170646 | None:intergenic |
AGATGTCCAGTCAGCAATAT+GGG | 0.462315 | 7_4:-43167264 | Msa1155260:CDS |
GGCCCTTATCATTGATAGCC+AGG | 0.463013 | 7_4:-43166865 | Msa1155260:CDS |
GTTTGCGCAAGGATTCTCTA+TGG | 0.464632 | 7_4:-43171606 | Msa1155260:CDS |
TTCCTGGCTATCAATGATAA+GGG | 0.467148 | 7_4:+43166863 | None:intergenic |
GATGGGACTGGCTTAACAAC+AGG | 0.468779 | 7_4:-43169242 | Msa1155260:CDS |
ACAAGCTTATCTACATAAGA+TGG | 0.470453 | 7_4:+43167793 | None:intergenic |
CTACATTCTGGTCCTAGAAA+AGG | 0.477386 | 7_4:+43171694 | None:intergenic |
CTCATCCTCTTGCATGGCTA+TGG | 0.477615 | 7_4:+43167738 | None:intergenic |
TGTGATTCCAGAAAAGGGTT+TGG | 0.479557 | 7_4:-43172394 | Msa1155260:CDS |
ATAAAGCTTGTTGGACCTGA+AGG | 0.482872 | 7_4:-43167308 | Msa1155260:intron |
AGTACTGTGATTCCAGAAAA+GGG | 0.485791 | 7_4:-43172399 | Msa1155260:CDS |
AGTGTATTTCCAAAAGTGGT+TGG | 0.489103 | 7_4:+43171468 | None:intergenic |
AAGGTAGCCATAAATTTCTC+AGG | 0.491005 | 7_4:+43167766 | None:intergenic |
AAGCCAGCTTCTTGAAGTGC+AGG | 0.498998 | 7_4:-43168090 | Msa1155260:intron |
AAGTTTCGAGCTTTGCATCT+GGG | 0.499309 | 7_4:+43172603 | None:intergenic |
CTAACTTTGGACTAAAGATC+AGG | 0.499881 | 7_4:+43166489 | None:intergenic |
GATTGTCAGATTTCGTGACT+TGG | 0.500107 | 7_4:+43169727 | None:intergenic |
TGGTTGCAAAAGTCAATGCC+AGG | 0.500246 | 7_4:+43169642 | None:intergenic |
CGTTGATGACTAGAAACAAA+TGG | 0.502636 | 7_4:-43166653 | Msa1155260:CDS |
AGTGCAAGGAGACACTGTTT+GGG | 0.515525 | 7_4:-43169679 | Msa1155260:CDS |
CAGCTTACATGATTATCTGA+AGG | 0.517761 | 7_4:-43166436 | Msa1155260:three_prime_UTR |
ATAGCAACATGGGAAGTTGA+TGG | 0.520731 | 7_4:-43169260 | Msa1155260:CDS |
GGAGTAATTGATAATTCTAG+TGG | 0.523042 | 7_4:+43171736 | None:intergenic |
TCCATTAGTTATGGCAACAA+GGG | 0.530233 | 7_4:-43168979 | Msa1155260:CDS |
AGCTCGAAACTTTCTTGCAG+TGG | 0.538099 | 7_4:-43172592 | Msa1155260:CDS |
GACAGTGGAGCGTTTGCGCA+AGG | 0.539091 | 7_4:-43171617 | Msa1155260:CDS |
ATACCTGCACTTCAAGAAGC+TGG | 0.540029 | 7_4:+43168087 | None:intergenic |
TTCCATTAGTTATGGCAACA+AGG | 0.540060 | 7_4:-43168980 | Msa1155260:CDS |
TGACTTTGAATTGCTCAAGA+AGG | 0.541013 | 7_4:-43166886 | Msa1155260:CDS |
TGAAGAGCATTCTGGAACAG+AGG | 0.541888 | 7_4:-43166913 | Msa1155260:CDS |
TTGCATGGCTATGGTCCTCA+AGG | 0.545540 | 7_4:+43167747 | None:intergenic |
AGCTTACATGATTATCTGAA+GGG | 0.547777 | 7_4:-43166435 | Msa1155260:three_prime_UTR |
GAAAGAAGATACATGGAGAC+AGG | 0.550561 | 7_4:+43169215 | None:intergenic |
ACTCCAAAAGCTGATGAAAA+CGG | 0.554851 | 7_4:-43169943 | Msa1155260:intron |
ACATGGGAAGTTGATGGGAC+TGG | 0.560853 | 7_4:-43169254 | Msa1155260:CDS |
TTGAATTCAGGCAAATGGGG+TGG | 0.561077 | 7_4:-43172443 | Msa1155260:intron |
CGCAAATCAAGAGGTAGCAA+TGG | 0.561397 | 7_4:-43172630 | Msa1155260:exon |
AAGTGGTTGGAAGCATATCA+AGG | 0.561594 | 7_4:+43171481 | None:intergenic |
TAGCAACATGGGAAGTTGAT+GGG | 0.562500 | 7_4:-43169259 | Msa1155260:CDS |
AATACATAAGAACGAGGCAA+TGG | 0.562764 | 7_4:+43169997 | None:intergenic |
AAGAAGGAGATGTAGATGAC+AGG | 0.563546 | 7_4:-43171660 | Msa1155260:CDS |
TTATGGCAACAAGGGAAATG+AGG | 0.564716 | 7_4:-43168971 | Msa1155260:intron |
TAAAGCTTGTTGGACCTGAA+GGG | 0.565102 | 7_4:-43167307 | Msa1155260:intron |
ATAGTATTGATTGCTTCTGA+AGG | 0.567549 | 7_4:+43168131 | None:intergenic |
TCAGCAATATGGGAGGTTTG+CGG | 0.572266 | 7_4:-43167254 | Msa1155260:CDS |
ATTATCAATTACTCCAATGA+GGG | 0.574443 | 7_4:-43171728 | Msa1155260:CDS |
TTTGTATGAAACTAAAGTGA+AGG | 0.575323 | 7_4:-43170637 | Msa1155260:CDS |
ATCTGAAGCCAATAGCAACA+TGG | 0.576295 | 7_4:-43169271 | Msa1155260:CDS |
GTTACCGGAAAGAAGATACA+TGG | 0.577935 | 7_4:+43169208 | None:intergenic |
AATGATGTTGTTATTGACAG+TGG | 0.579816 | 7_4:-43171632 | Msa1155260:CDS |
TGTGATAAAGATGTTTCTGA+TGG | 0.581741 | 7_4:-43172364 | Msa1155260:intron |
GAGGAACTTCAAGAGCTAAG+AGG | 0.585300 | 7_4:-43171432 | Msa1155260:CDS |
TACACTTTGGTTTAGTGACG+AGG | 0.587689 | 7_4:-43171451 | Msa1155260:CDS |
GAAAAGCTCATCCTCTTGCA+TGG | 0.596233 | 7_4:+43167732 | None:intergenic |
GTTTGCAACTATAGTTGGAG+TGG | 0.596685 | 7_4:-43167829 | Msa1155260:CDS |
AAAGCTTGTTGGACCTGAAG+GGG | 0.597163 | 7_4:-43167306 | Msa1155260:intron |
AAACCTCCCATATTGCTGAC+TGG | 0.603393 | 7_4:+43167258 | None:intergenic |
TCTGAAGCCAATAGCAACAT+GGG | 0.609278 | 7_4:-43169270 | Msa1155260:CDS |
AATTATCAATTACTCCAATG+AGG | 0.609295 | 7_4:-43171729 | Msa1155260:CDS |
GGTTTCGTCAATGCTTGAAG+AGG | 0.612106 | 7_4:-43167707 | Msa1155260:intron |
ACTACACATAGCACAGTGCA+AGG | 0.619661 | 7_4:-43169693 | Msa1155260:CDS |
CAAAGTAGGCGCAAATCAAG+AGG | 0.619679 | 7_4:-43172639 | Msa1155260:five_prime_UTR |
ATTTCTCGATCAATCTGCAA+GGG | 0.622050 | 7_4:+43169003 | None:intergenic |
AATTTCTCGATCAATCTGCA+AGG | 0.626269 | 7_4:+43169002 | None:intergenic |
GCAATGGAGTGTTCAAAGCA+CGG | 0.630375 | 7_4:+43170013 | None:intergenic |
ACTAAAGATCAGGTAACAAG+AGG | 0.636655 | 7_4:+43166499 | None:intergenic |
GAGGACCATAGCCATGCAAG+AGG | 0.645533 | 7_4:-43167743 | Msa1155260:CDS |
CAGAATGGCAAATGACTCAG+AGG | 0.653745 | 7_4:-43166682 | Msa1155260:CDS |
TAACACAGATGACTACCTCA+TGG | 0.656026 | 7_4:-43168274 | Msa1155260:intron |
AGAAATTTATGGCTACCTTG+AGG | 0.656692 | 7_4:-43167762 | Msa1155260:CDS |
AGGAACTTTACAATGTGACA+TGG | 0.661088 | 7_4:+43166519 | None:intergenic |
GGTTGCAAAAGTCAATGCCA+GGG | 0.664466 | 7_4:+43169643 | None:intergenic |
GAAATCTGACAATCTAACCA+AGG | 0.669830 | 7_4:-43169718 | Msa1155260:CDS |
GCAAATGGGGTGGAGCTACG+AGG | 0.694142 | 7_4:-43172433 | Msa1155260:CDS |
TCTGCTATTGTATATAGACG+AGG | 0.714826 | 7_4:-43166630 | Msa1155260:CDS |
TGTCCAGTCAGCAATATGGG+AGG | 0.717026 | 7_4:-43167261 | Msa1155260:CDS |
TCAGGAAATACATAAGAACG+AGG | 0.734559 | 7_4:+43169991 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTATTTTATTTTACTTTA+TGG | - | chr7_4:43167463-43167482 | Msa1155260:intron | 10.0% |
!!! | AGAATGTTTTTTAAAATTTT+GGG | + | chr7_4:43167810-43167829 | None:intergenic | 10.0% |
!! | TTAAAATTGATATTAAAGTA+AGG | - | chr7_4:43169264-43169283 | Msa1155260:CDS | 10.0% |
!!! | TCATATAAAAAGTATATAAA+GGG | + | chr7_4:43169512-43169531 | None:intergenic | 10.0% |
!!! | ATCATATAAAAAGTATATAA+AGG | + | chr7_4:43169513-43169532 | None:intergenic | 10.0% |
!!! | TTAGTCAATAAATATATTTT+AGG | + | chr7_4:43171915-43171934 | None:intergenic | 10.0% |
!! | AAAATTGTTTACAAAAAGTA+AGG | + | chr7_4:43167181-43167200 | None:intergenic | 15.0% |
!!! | TTATTTGTTTTCAAAAAGTA+AGG | + | chr7_4:43167232-43167251 | None:intergenic | 15.0% |
!!! | TTTTGTTTTTCTTTGAAAAA+AGG | - | chr7_4:43167257-43167276 | Msa1155260:CDS | 15.0% |
!!! | TTTGTTTTTCTTTGAAAAAA+GGG | - | chr7_4:43167258-43167277 | Msa1155260:CDS | 15.0% |
!! | AATAAAATAAACCATACATA+CGG | + | chr7_4:43167455-43167474 | None:intergenic | 15.0% |
!!! | CAGAATGTTTTTTAAAATTT+TGG | + | chr7_4:43167811-43167830 | None:intergenic | 15.0% |
!!! | AGTTTGATTTAAATATTGTT+AGG | - | chr7_4:43168569-43168588 | Msa1155260:intron | 15.0% |
!!! | CATATAAAAAGTATATAAAG+GGG | + | chr7_4:43169511-43169530 | None:intergenic | 15.0% |
!! | AAGAAAAACAATGAATTAAA+GGG | + | chr7_4:43169988-43170007 | None:intergenic | 15.0% |
!! | TAAAGTTGAAGATAAATTAT+TGG | + | chr7_4:43170972-43170991 | None:intergenic | 15.0% |
!!! | CTATGCAATATTTTTTTTAA+TGG | - | chr7_4:43171356-43171375 | Msa1155260:intron | 15.0% |
!! | AATAAGTAAAAATCTAACTT+TGG | + | chr7_4:43172559-43172578 | None:intergenic | 15.0% |
!! | TACTTTGACAAGAAAAAAAA+TGG | + | chr7_4:43166380-43166399 | None:intergenic | 20.0% |
!!! | ATTTTTTTTCTTGTCAAAGT+AGG | - | chr7_4:43166379-43166398 | Msa1155260:three_prime_UTR | 20.0% |
!!! | CATAGTTTTGAATTTTGATT+TGG | - | chr7_4:43166564-43166583 | Msa1155260:CDS | 20.0% |
!!! | TTTTCATAAGCTCAAAAATA+AGG | - | chr7_4:43166957-43166976 | Msa1155260:intron | 20.0% |
!! | AAATTAACTATGTTTACTCA+AGG | + | chr7_4:43167883-43167902 | None:intergenic | 20.0% |
!!! | TAAACATAGTTAATTTGAAG+CGG | - | chr7_4:43167887-43167906 | Msa1155260:CDS | 20.0% |
!!! | TTCTAGTTTATGTTTTTAAG+TGG | - | chr7_4:43168495-43168514 | Msa1155260:intron | 20.0% |
!! | TAAGATGTCAAAATTTCAAT+AGG | + | chr7_4:43168548-43168567 | None:intergenic | 20.0% |
!! | TTATGTCAATCATGTTAATT+TGG | - | chr7_4:43168593-43168612 | Msa1155260:intron | 20.0% |
!! | TAGTATATTTAGTGCAATAA+TGG | + | chr7_4:43168693-43168712 | None:intergenic | 20.0% |
!!! | TTTTTAAGTTTATACGTTCA+AGG | - | chr7_4:43168733-43168752 | Msa1155260:intron | 20.0% |
!!! | TGTTTGAAACTTAAAAATTG+CGG | + | chr7_4:43168826-43168845 | None:intergenic | 20.0% |
!! | AAAATCAGAGAAATACTAAA+TGG | + | chr7_4:43169239-43169258 | None:intergenic | 20.0% |
!!! | TAGTATTTCTCTGATTTTTT+TGG | - | chr7_4:43169241-43169260 | Msa1155260:CDS | 20.0% |
!! | ATTAATGACCAATATTTGTA+AGG | + | chr7_4:43169562-43169581 | None:intergenic | 20.0% |
!!! | ATTTTATGAAACTACCTAAA+TGG | + | chr7_4:43169945-43169964 | None:intergenic | 20.0% |
!! | AGAAAAACAATGAATTAAAG+GGG | + | chr7_4:43169987-43170006 | None:intergenic | 20.0% |
!! | CAAGAAAAACAATGAATTAA+AGG | + | chr7_4:43169989-43170008 | None:intergenic | 20.0% |
!!! | CTTTAATTCATTGTTTTTCT+TGG | - | chr7_4:43169987-43170006 | Msa1155260:CDS | 20.0% |
!! | GAAAAAAATCAATCAATCAT+GGG | + | chr7_4:43170100-43170119 | None:intergenic | 20.0% |
!! | AGAAAAAAATCAATCAATCA+TGG | + | chr7_4:43170101-43170120 | None:intergenic | 20.0% |
!!! | TTTCTTCTTCTATTTTTCTA+TGG | - | chr7_4:43170116-43170135 | Msa1155260:intron | 20.0% |
!! | TTTGATAGATCATAACATAT+TGG | + | chr7_4:43170357-43170376 | None:intergenic | 20.0% |
!!! | TTAGGTATAAATTTTAGTCT+TGG | + | chr7_4:43170811-43170830 | None:intergenic | 20.0% |
!! | AACAATAGATAATGTCAAAT+AGG | + | chr7_4:43171029-43171048 | None:intergenic | 20.0% |
!!! | ATATGATTTTTTCTGCTATT+TGG | - | chr7_4:43171478-43171497 | Msa1155260:CDS | 20.0% |
!! | ATATATACAATCAACTGTTA+TGG | + | chr7_4:43171874-43171893 | None:intergenic | 20.0% |
!! | GTGAAAATATGAAAACAATT+AGG | + | chr7_4:43172077-43172096 | None:intergenic | 20.0% |
!! | TCAATATATTGTAGGAAAAT+TGG | + | chr7_4:43172294-43172313 | None:intergenic | 20.0% |
!! | CAAAAACATCAATATATTGT+AGG | + | chr7_4:43172302-43172321 | None:intergenic | 20.0% |
!!! | AAAAAAATGGTGATGGTTTA+AGG | + | chr7_4:43166367-43166386 | None:intergenic | 25.0% |
!! | TAACTCTGGTTTGTAATTTA+AGG | - | chr7_4:43166475-43166494 | Msa1155260:three_prime_UTR | 25.0% |
!! | GTTTGTAATTTAAGGCATAA+TGG | - | chr7_4:43166483-43166502 | Msa1155260:three_prime_UTR | 25.0% |
!!! | TTAGCTTTTATACCATTCTT+TGG | - | chr7_4:43166516-43166535 | Msa1155260:three_prime_UTR | 25.0% |
! | TTTGAAAATTCACCAAAGAA+TGG | + | chr7_4:43166531-43166550 | None:intergenic | 25.0% |
!! | TCTTTGGTGAATTTTCAAAA+TGG | - | chr7_4:43166532-43166551 | Msa1155260:exon | 25.0% |
!!! | TTTGATTTGGTTTTGAATTC+AGG | - | chr7_4:43166577-43166596 | Msa1155260:CDS | 25.0% |
! | TGTACTAATATCAGTATGAA+TGG | - | chr7_4:43166697-43166716 | Msa1155260:intron | 25.0% |
!!! | GACTTTTTTTTTTGCTTCAT+TGG | + | chr7_4:43167113-43167132 | None:intergenic | 25.0% |
! | ATAGCAATAAACACTATTCA+GGG | + | chr7_4:43167206-43167225 | None:intergenic | 25.0% |
! | AATTATCAATTACTCCAATG+AGG | - | chr7_4:43167303-43167322 | Msa1155260:CDS | 25.0% |
! | ATTATCAATTACTCCAATGA+GGG | - | chr7_4:43167304-43167323 | Msa1155260:CDS | 25.0% |
! | TAAATTAGCTAGTAAAACAC+AGG | + | chr7_4:43167710-43167729 | None:intergenic | 25.0% |
! | GCATTATTAATAAAACATGC+TGG | - | chr7_4:43167738-43167757 | Msa1155260:CDS | 25.0% |
! | TTGTAGTAAATAATGTATCG+TGG | + | chr7_4:43168019-43168038 | None:intergenic | 25.0% |
! | TTGTTATATAGAGTCAATTG+CGG | - | chr7_4:43168043-43168062 | Msa1155260:intron | 25.0% |
! | TATATTAGAAAAGCTAGGTT+TGG | + | chr7_4:43168190-43168209 | None:intergenic | 25.0% |
! | GAGATTATATTAGAAAAGCT+AGG | + | chr7_4:43168195-43168214 | None:intergenic | 25.0% |
!! | CTTTTCTAATATAATCTCCA+TGG | - | chr7_4:43168197-43168216 | Msa1155260:intron | 25.0% |
!!! | AACAAATTTAGGCTGTTTTA+TGG | - | chr7_4:43168270-43168289 | Msa1155260:intron | 25.0% |
!!! | ACAAATTTAGGCTGTTTTAT+GGG | - | chr7_4:43168271-43168290 | Msa1155260:intron | 25.0% |
! | TCAAATACTGCTAAATACAA+TGG | + | chr7_4:43168339-43168358 | None:intergenic | 25.0% |
! | TAGTTTCATACAAATTCAAC+AGG | + | chr7_4:43168389-43168408 | None:intergenic | 25.0% |
! | TTTGTATGAAACTAAAGTGA+AGG | - | chr7_4:43168395-43168414 | Msa1155260:intron | 25.0% |
! | GTTTCAATTTATAATCCTGA+AGG | + | chr7_4:43168778-43168797 | None:intergenic | 25.0% |
! | TTTCAAACATACATTTACGA+TGG | - | chr7_4:43168837-43168856 | Msa1155260:intron | 25.0% |
! | AAGTAAGGAAGTTATATTTC+AGG | - | chr7_4:43169279-43169298 | Msa1155260:intron | 25.0% |
!!! | TTCCTTGTTTTTTCATTGAT+TGG | - | chr7_4:43169471-43169490 | Msa1155260:intron | 25.0% |
!!! | TCCTTGTTTTTTCATTGATT+GGG | - | chr7_4:43169472-43169491 | Msa1155260:intron | 25.0% |
! | ACTAAACACCTTACAAATAT+TGG | - | chr7_4:43169551-43169570 | Msa1155260:intron | 25.0% |
!!! | ATTACTTTTCTTGCCATATA+CGG | - | chr7_4:43169671-43169690 | Msa1155260:CDS | 25.0% |
! | TATGTTATGATCTATCAAAG+AGG | - | chr7_4:43170358-43170377 | Msa1155260:intron | 25.0% |
! | ATTCAAATTGACTGAACAAA+AGG | - | chr7_4:43170458-43170477 | Msa1155260:intron | 25.0% |
! | AACAAAAGGTTTAATAGAAC+TGG | - | chr7_4:43170472-43170491 | Msa1155260:intron | 25.0% |
!! | ATGTCTTGATGGAATTTTAT+TGG | + | chr7_4:43170514-43170533 | None:intergenic | 25.0% |
!! | TGTTTTTCCTGAGAAATTTA+TGG | - | chr7_4:43171259-43171278 | Msa1155260:intron | 25.0% |
!! | AATTAAGTTGCTTATCCAAA+CGG | + | chr7_4:43171505-43171524 | None:intergenic | 25.0% |
! | CAAATGAAAACATAATTGCT+AGG | + | chr7_4:43171646-43171665 | None:intergenic | 25.0% |
!! | CTAGCAATTATGTTTTCATT+TGG | - | chr7_4:43171644-43171663 | Msa1155260:CDS | 25.0% |
!! | TCATATTTTCACTGCATTTA+AGG | - | chr7_4:43172085-43172104 | Msa1155260:intron | 25.0% |
!! | TGAAATGCAAGTTTTACTTA+GGG | + | chr7_4:43172269-43172288 | None:intergenic | 25.0% |
! | CTCAAAGGAAATTAAGAAAA+AGG | + | chr7_4:43172330-43172349 | None:intergenic | 25.0% |
! | AACTTTCCACACTAAAAAAT+TGG | + | chr7_4:43172633-43172652 | None:intergenic | 25.0% |
GACAAGAAAAAAAATGGTGA+TGG | + | chr7_4:43166374-43166393 | None:intergenic | 30.0% | |
! | TGTGATAAAGATGTTTCTGA+TGG | - | chr7_4:43166668-43166687 | Msa1155260:CDS | 30.0% |
! | TGAATGGATTTCATTGTAGA+TGG | - | chr7_4:43166713-43166732 | Msa1155260:intron | 30.0% |
!! | TTGCATAAGTTGTTTTGCAT+AGG | + | chr7_4:43166807-43166826 | None:intergenic | 30.0% |
TAAGTTGTCACTAACGAAAA+TGG | + | chr7_4:43166899-43166918 | None:intergenic | 30.0% | |
CAAAAATAAGGCAATCCAAA+CGG | - | chr7_4:43166969-43166988 | Msa1155260:intron | 30.0% | |
CATAGCAATAAACACTATTC+AGG | + | chr7_4:43167207-43167226 | None:intergenic | 30.0% | |
TTTGAAAAAAGGGATTCTGT+TGG | - | chr7_4:43167268-43167287 | Msa1155260:CDS | 30.0% | |
! | GGAGTAATTGATAATTCTAG+TGG | + | chr7_4:43167299-43167318 | None:intergenic | 30.0% |
! | AATGATGTTGTTATTGACAG+TGG | - | chr7_4:43167400-43167419 | Msa1155260:intron | 30.0% |
GGTTTACTCAAATTGGTTAA+TGG | + | chr7_4:43167689-43167708 | None:intergenic | 30.0% | |
AAACACAGGTTTACTCAAAT+TGG | + | chr7_4:43167696-43167715 | None:intergenic | 30.0% | |
TTTGACAACACTGTATCATT+CGG | + | chr7_4:43167942-43167961 | None:intergenic | 30.0% | |
! | GTTGACTCTATATAACATTC+TGG | + | chr7_4:43168155-43168174 | None:intergenic | 30.0% |
ATATAATCTCCATGGTGTAA+TGG | - | chr7_4:43168205-43168224 | Msa1155260:intron | 30.0% | |
TATAATCTCCATGGTGTAAT+GGG | - | chr7_4:43168206-43168225 | Msa1155260:intron | 30.0% | |
!!! | ATGACTTTTTTGAACCTTTC+AGG | - | chr7_4:43168245-43168264 | Msa1155260:intron | 30.0% |
!! | AAGAAACTTTTGACTCTTGA+CGG | - | chr7_4:43168426-43168445 | Msa1155260:intron | 30.0% |
!!! | GGTTTTGAAATTGAGAACTA+CGG | - | chr7_4:43168614-43168633 | Msa1155260:intron | 30.0% |
TCCCAATCAATGAAAAAACA+AGG | + | chr7_4:43169476-43169495 | None:intergenic | 30.0% | |
! | ATTTGTAAGGTGTTTAGTGA+AGG | + | chr7_4:43169549-43169568 | None:intergenic | 30.0% |
ATATCAGCTGTTTGATCATA+GGG | + | chr7_4:43169605-43169624 | None:intergenic | 30.0% | |
AATATCAGCTGTTTGATCAT+AGG | + | chr7_4:43169606-43169625 | None:intergenic | 30.0% | |
GTAAATCACATATTCTCATG+AGG | + | chr7_4:43169720-43169739 | None:intergenic | 30.0% | |
TGTGATTTACCTTGATTACA+TGG | - | chr7_4:43169730-43169749 | Msa1155260:CDS | 30.0% | |
TGATTTCTCTCTTTCCATTT+AGG | - | chr7_4:43169928-43169947 | Msa1155260:intron | 30.0% | |
CGAGAAATTTCCATTAGTTA+TGG | - | chr7_4:43170044-43170063 | Msa1155260:intron | 30.0% | |
!! | CAGCGAAGTTGATTTTATAT+AGG | - | chr7_4:43170219-43170238 | Msa1155260:intron | 30.0% |
TTGCATCATATCATGTGAAT+AGG | + | chr7_4:43170286-43170305 | None:intergenic | 30.0% | |
AGAACTGGATCCATAATTTA+CGG | - | chr7_4:43170487-43170506 | Msa1155260:intron | 30.0% | |
! | TTTTATTGGCCCGTAAATTA+TGG | + | chr7_4:43170500-43170519 | None:intergenic | 30.0% |
! | GCTTATTTCAAGTGTTAACA+TGG | - | chr7_4:43170674-43170693 | Msa1155260:intron | 30.0% |
AGGAATGGAAGTAATATGTT+AGG | + | chr7_4:43170829-43170848 | None:intergenic | 30.0% | |
!! | ATAGTATTGATTGCTTCTGA+AGG | + | chr7_4:43170904-43170923 | None:intergenic | 30.0% |
AAATTCACTCTCTGTTATTC+TGG | - | chr7_4:43171069-43171088 | Msa1155260:intron | 30.0% | |
!!! | ATTCTGGTTTTGTTTACAGA+AGG | - | chr7_4:43171085-43171104 | Msa1155260:intron | 30.0% |
!!! | GATAATGGATTTTTTCCATC+AGG | - | chr7_4:43171143-43171162 | Msa1155260:intron | 30.0% |
!! | GTTATTTTCTCCACTGTTTT+TGG | + | chr7_4:43171171-43171190 | None:intergenic | 30.0% |
ACAAAGTTTGCAACTATAGT+TGG | - | chr7_4:43171198-43171217 | Msa1155260:intron | 30.0% | |
ACAAGCTTATCTACATAAGA+TGG | + | chr7_4:43171242-43171261 | None:intergenic | 30.0% | |
! | ATTAAGTTGCTTATCCAAAC+GGG | + | chr7_4:43171504-43171523 | None:intergenic | 30.0% |
TATGGTTGTTATGTAATTCC+TGG | + | chr7_4:43171856-43171875 | None:intergenic | 30.0% | |
TCCTTCTTCAATAAGTGAAA+TGG | + | chr7_4:43172014-43172033 | None:intergenic | 30.0% | |
! | TTCACTGCATTTAAGGTTAA+TGG | - | chr7_4:43172092-43172111 | Msa1155260:intron | 30.0% |
! | GTGAAATGCAAGTTTTACTT+AGG | + | chr7_4:43172270-43172289 | None:intergenic | 30.0% |
TTAATTTCCTTTGAGCAGAA+TGG | - | chr7_4:43172335-43172354 | Msa1155260:intron | 30.0% | |
CTTATTGTCAATTCAGTTCT+TGG | - | chr7_4:43172573-43172592 | Msa1155260:intron | 30.0% | |
AGCTTACATGATTATCTGAA+GGG | - | chr7_4:43172597-43172616 | Msa1155260:CDS | 30.0% | |
!!! | TTAGCTCCAATTTTTTAGTG+TGG | - | chr7_4:43172624-43172643 | Msa1155260:exon | 30.0% |
!!! | TGGTTTTGAATTCAGGCAAA+TGG | - | chr7_4:43166584-43166603 | Msa1155260:CDS | 35.0% |
!!! | GGTTTTGAATTCAGGCAAAT+GGG | - | chr7_4:43166585-43166604 | Msa1155260:CDS | 35.0% |
!! | GTTTTGAATTCAGGCAAATG+GGG | - | chr7_4:43166586-43166605 | Msa1155260:CDS | 35.0% |
! | AAGTACTGTGATTCCAGAAA+AGG | - | chr7_4:43166632-43166651 | Msa1155260:CDS | 35.0% |
AGTACTGTGATTCCAGAAAA+GGG | - | chr7_4:43166633-43166652 | Msa1155260:CDS | 35.0% | |
! | AAATATGCCAAACCCTTTTC+TGG | + | chr7_4:43166648-43166667 | None:intergenic | 35.0% |
! | GTATTGCAAGATCCTTTTCT+AGG | - | chr7_4:43167326-43167345 | Msa1155260:intron | 35.0% |
TCAAACAATGCTCTACATTC+TGG | + | chr7_4:43167353-43167372 | None:intergenic | 35.0% | |
!! | TGTAGAGCATTGTTTGAAGA+AGG | - | chr7_4:43167356-43167375 | Msa1155260:intron | 35.0% |
TTCAGAACTTCAGATTGTGT+TGG | - | chr7_4:43167486-43167505 | Msa1155260:intron | 35.0% | |
TCAGAACTTCAGATTGTGTT+GGG | - | chr7_4:43167487-43167506 | Msa1155260:intron | 35.0% | |
GGAGATGCTGAAATTTAATC+AGG | - | chr7_4:43167526-43167545 | Msa1155260:intron | 35.0% | |
AGTGTATTTCCAAAAGTGGT+TGG | + | chr7_4:43167567-43167586 | None:intergenic | 35.0% | |
CCAAAGTGTATTTCCAAAAG+TGG | + | chr7_4:43167571-43167590 | None:intergenic | 35.0% | |
!! | CCACTTTTGGAAATACACTT+TGG | - | chr7_4:43167568-43167587 | Msa1155260:intron | 35.0% |
TGGTCAATCGCAGAAAATAT+TGG | + | chr7_4:43168104-43168123 | None:intergenic | 35.0% | |
! | GATAGATCGAATGTCATTTC+TGG | - | chr7_4:43168300-43168319 | Msa1155260:CDS | 35.0% |
!! | AGATTCTGAGATGTATGTGT+TGG | - | chr7_4:43168449-43168468 | Msa1155260:intron | 35.0% |
!! | GATTCTGAGATGTATGTGTT+GGG | - | chr7_4:43168450-43168469 | Msa1155260:intron | 35.0% |
!! | TGTGCTTTGAAGATTTCCTT+TGG | - | chr7_4:43168893-43168912 | Msa1155260:intron | 35.0% |
! | TCACTAGAAGTACATACCAA+AGG | + | chr7_4:43168912-43168931 | None:intergenic | 35.0% |
TATGACTTCAACTAACTCCT+TGG | - | chr7_4:43168945-43168964 | Msa1155260:intron | 35.0% | |
! | CTAGGGCAAATTCAGTATTT+TGG | - | chr7_4:43168994-43169013 | Msa1155260:CDS | 35.0% |
AATACATAAGAACGAGGCAA+TGG | + | chr7_4:43169038-43169057 | None:intergenic | 35.0% | |
TCAGGAAATACATAAGAACG+AGG | + | chr7_4:43169044-43169063 | None:intergenic | 35.0% | |
ACTCCAAAAGCTGATGAAAA+CGG | - | chr7_4:43169089-43169108 | Msa1155260:intron | 35.0% | |
! | TAACCGTTTTCATCAGCTTT+TGG | + | chr7_4:43169095-43169114 | None:intergenic | 35.0% |
GAAATCTGACAATCTAACCA+AGG | - | chr7_4:43169314-43169333 | Msa1155260:intron | 35.0% | |
CTTCAAGCAACAATTTACCA+TGG | + | chr7_4:43169413-43169432 | None:intergenic | 35.0% | |
CATACATATACATGCATGTC+TGG | - | chr7_4:43169632-43169651 | Msa1155260:intron | 35.0% | |
ATCTACCATACTACCGTATA+TGG | + | chr7_4:43169687-43169706 | None:intergenic | 35.0% | |
ATTTCTCGATCAATCTGCAA+GGG | + | chr7_4:43170032-43170051 | None:intergenic | 35.0% | |
AATTTCTCGATCAATCTGCA+AGG | + | chr7_4:43170033-43170052 | None:intergenic | 35.0% | |
TTCCATTAGTTATGGCAACA+AGG | - | chr7_4:43170052-43170071 | Msa1155260:intron | 35.0% | |
TCCATTAGTTATGGCAACAA+GGG | - | chr7_4:43170053-43170072 | Msa1155260:intron | 35.0% | |
! | GGGAAATGAGGTACTTTATA+TGG | - | chr7_4:43170073-43170092 | Msa1155260:intron | 35.0% |
TGTTGAATGAGTGAGAATAG+AGG | - | chr7_4:43170168-43170187 | Msa1155260:intron | 35.0% | |
! | ATCTATCAAAGAGGTATGCA+AGG | - | chr7_4:43170367-43170386 | Msa1155260:intron | 35.0% |
! | TCTATCAAAGAGGTATGCAA+GGG | - | chr7_4:43170368-43170387 | Msa1155260:intron | 35.0% |
GAACTGGATCCATAATTTAC+GGG | - | chr7_4:43170488-43170507 | Msa1155260:intron | 35.0% | |
CTGCATCAAGTGGAAAAATA+TGG | + | chr7_4:43170703-43170722 | None:intergenic | 35.0% | |
! | CATATTTTTCCACTTGATGC+AGG | - | chr7_4:43170701-43170720 | Msa1155260:intron | 35.0% |
CAGGAACTTCTATATCTGTA+TGG | - | chr7_4:43170720-43170739 | Msa1155260:intron | 35.0% | |
!!! | AAATTTTAGTCTTGGTGCAC+AGG | + | chr7_4:43170803-43170822 | None:intergenic | 35.0% |
CAACAGAAACAACTAAGGAA+TGG | + | chr7_4:43170844-43170863 | None:intergenic | 35.0% | |
!! | CATTCCTTAGTTGTTTCTGT+TGG | - | chr7_4:43170842-43170861 | Msa1155260:intron | 35.0% |
CATACCAACAGAAACAACTA+AGG | + | chr7_4:43170849-43170868 | None:intergenic | 35.0% | |
! | TGATTGCTTCTGAAGGATAA+TGG | + | chr7_4:43170897-43170916 | None:intergenic | 35.0% |
AGAGAGTGAATTTACGAAAG+GGG | + | chr7_4:43171062-43171081 | None:intergenic | 35.0% | |
CAGAGAGTGAATTTACGAAA+GGG | + | chr7_4:43171063-43171082 | None:intergenic | 35.0% | |
ACAGAGAGTGAATTTACGAA+AGG | + | chr7_4:43171064-43171083 | None:intergenic | 35.0% | |
AAGGTAGCCATAAATTTCTC+AGG | + | chr7_4:43171269-43171288 | None:intergenic | 35.0% | |
AGAAATTTATGGCTACCTTG+AGG | - | chr7_4:43171270-43171289 | Msa1155260:intron | 35.0% | |
AAATGCAGTTTCAGTGACTA+AGG | + | chr7_4:43171401-43171420 | None:intergenic | 35.0% | |
ATGAAAAGGACAGCTATATG+TGG | + | chr7_4:43171439-43171458 | None:intergenic | 35.0% | |
TTCTGTCACATAAAGCTTGT+TGG | - | chr7_4:43171715-43171734 | Msa1155260:CDS | 35.0% | |
AATAAGTGAAATGGCGCATT+TGG | + | chr7_4:43172005-43172024 | None:intergenic | 35.0% | |
GCCATTTCACTTATTGAAGA+AGG | - | chr7_4:43172010-43172029 | Msa1155260:intron | 35.0% | |
TGACTTTGAATTGCTCAAGA+AGG | - | chr7_4:43172146-43172165 | Msa1155260:intron | 35.0% | |
TTCCTGGCTATCAATGATAA+GGG | + | chr7_4:43172172-43172191 | None:intergenic | 35.0% | |
!! | CGTTGATGACTAGAAACAAA+TGG | - | chr7_4:43172379-43172398 | Msa1155260:CDS | 35.0% |
TCTGCTATTGTATATAGACG+AGG | - | chr7_4:43172402-43172421 | Msa1155260:CDS | 35.0% | |
AGGAACTTTACAATGTGACA+TGG | + | chr7_4:43172516-43172535 | None:intergenic | 35.0% | |
ACTAAAGATCAGGTAACAAG+AGG | + | chr7_4:43172536-43172555 | None:intergenic | 35.0% | |
CTAACTTTGGACTAAAGATC+AGG | + | chr7_4:43172546-43172565 | None:intergenic | 35.0% | |
CAGCTTACATGATTATCTGA+AGG | - | chr7_4:43172596-43172615 | Msa1155260:CDS | 35.0% | |
AAGTTTCGAGCTTTGCATCT+GGG | + | chr7_4:43166432-43166451 | None:intergenic | 40.0% | |
AAAGTTTCGAGCTTTGCATC+TGG | + | chr7_4:43166433-43166452 | None:intergenic | 40.0% | |
TGTGATTCCAGAAAAGGGTT+TGG | - | chr7_4:43166638-43166657 | Msa1155260:CDS | 40.0% | |
!!! | TCCATCAGTTGCTGTTTTCA+GGG | + | chr7_4:43166995-43167014 | None:intergenic | 40.0% |
CTACATTCTGGTCCTAGAAA+AGG | + | chr7_4:43167341-43167360 | None:intergenic | 40.0% | |
AAGAAGGAGATGTAGATGAC+AGG | - | chr7_4:43167372-43167391 | Msa1155260:intron | 40.0% | |
CTCTATGGAAACCGTATGTA+TGG | - | chr7_4:43167441-43167460 | Msa1155260:intron | 40.0% | |
! | AAGTGGTTGGAAGCATATCA+AGG | + | chr7_4:43167554-43167573 | None:intergenic | 40.0% |
! | GATATGCTTCCAACCACTTT+TGG | - | chr7_4:43167555-43167574 | Msa1155260:intron | 40.0% |
! | TACACTTTGGTTTAGTGACG+AGG | - | chr7_4:43167581-43167600 | Msa1155260:intron | 40.0% |
ATATCGTGCAACTGAGTTAC+AGG | - | chr7_4:43167632-43167651 | Msa1155260:intron | 40.0% | |
AAAGCACAGAAACCAACACA+TGG | + | chr7_4:43167779-43167798 | None:intergenic | 40.0% | |
CCTCGTATAACATTCTAGTG+TGG | + | chr7_4:43168124-43168143 | None:intergenic | 40.0% | |
CCACACTAGAATGTTATACG+AGG | - | chr7_4:43168121-43168140 | Msa1155260:CDS | 40.0% | |
! | CCTAAATTTGTTCGCCTGAA+AGG | + | chr7_4:43168262-43168281 | None:intergenic | 40.0% |
CCTTTCAGGCGAACAAATTT+AGG | - | chr7_4:43168259-43168278 | Msa1155260:intron | 40.0% | |
ATACCTTCTCAACTACCTTC+AGG | - | chr7_4:43168760-43168779 | Msa1155260:intron | 40.0% | |
AATCCTGAAGGTAGTTGAGA+AGG | + | chr7_4:43168766-43168785 | None:intergenic | 40.0% | |
!! | TATGACCTGTTTTTCCAGAG+AGG | - | chr7_4:43168870-43168889 | Msa1155260:intron | 40.0% |
AAGTCAGATATCAACCTCCA+AGG | + | chr7_4:43168965-43168984 | None:intergenic | 40.0% | |
! | ATCTGACTTGCATTCATGCT+AGG | - | chr7_4:43168976-43168995 | Msa1155260:CDS | 40.0% |
! | TCTGACTTGCATTCATGCTA+GGG | - | chr7_4:43168977-43168996 | Msa1155260:CDS | 40.0% |
TGATGAACATCTTGCATCTC+AGG | + | chr7_4:43169062-43169081 | None:intergenic | 40.0% | |
TCACAGGAGACAATCTTTAC+AGG | + | chr7_4:43169196-43169215 | None:intergenic | 40.0% | |
GATTGTCAGATTTCGTGACT+TGG | + | chr7_4:43169308-43169327 | None:intergenic | 40.0% | |
TGTGCTATGTGTAGTTTCCT+TGG | + | chr7_4:43169334-43169353 | None:intergenic | 40.0% | |
TACATGCATGTCTGGATTTG+TGG | - | chr7_4:43169640-43169659 | Msa1155260:CDS | 40.0% | |
TCTTGCCATATACGGTAGTA+TGG | - | chr7_4:43169679-43169698 | Msa1155260:CDS | 40.0% | |
! | TCTGATTGGCCATGTAATCA+AGG | + | chr7_4:43169742-43169761 | None:intergenic | 40.0% |
!! | CTATTGGCTTCAGATCTGAT+TGG | + | chr7_4:43169756-43169775 | None:intergenic | 40.0% |
! | ATCTGAAGCCAATAGCAACA+TGG | - | chr7_4:43169761-43169780 | Msa1155260:intron | 40.0% |
! | TCTGAAGCCAATAGCAACAT+GGG | - | chr7_4:43169762-43169781 | Msa1155260:intron | 40.0% |
TCAACTTCCCATGTTGCTAT+TGG | + | chr7_4:43169772-43169791 | None:intergenic | 40.0% | |
ATAGCAACATGGGAAGTTGA+TGG | - | chr7_4:43169772-43169791 | Msa1155260:intron | 40.0% | |
! | TAGCAACATGGGAAGTTGAT+GGG | - | chr7_4:43169773-43169792 | Msa1155260:intron | 40.0% |
GAAAGAAGATACATGGAGAC+AGG | + | chr7_4:43169820-43169839 | None:intergenic | 40.0% | |
GTCTCCATGTATCTTCTTTC+CGG | - | chr7_4:43169820-43169839 | Msa1155260:intron | 40.0% | |
GTTACCGGAAAGAAGATACA+TGG | + | chr7_4:43169827-43169846 | None:intergenic | 40.0% | |
ACGCACACAAAGAATGTTAC+CGG | + | chr7_4:43169842-43169861 | None:intergenic | 40.0% | |
TCCCTTGTTGCCATAACTAA+TGG | + | chr7_4:43170057-43170076 | None:intergenic | 40.0% | |
TTATGGCAACAAGGGAAATG+AGG | - | chr7_4:43170061-43170080 | Msa1155260:intron | 40.0% | |
AGGTATGCAAGGGAAACATA+CGG | - | chr7_4:43170378-43170397 | Msa1155260:intron | 40.0% | |
!! | GTTCTGGTTCAATGCTTTGT+TGG | - | chr7_4:43170429-43170448 | Msa1155260:intron | 40.0% |
TGTAGGATGCAATGTCTTGA+TGG | + | chr7_4:43170525-43170544 | None:intergenic | 40.0% | |
AAGACATTGCATCCTACACT+AGG | - | chr7_4:43170527-43170546 | Msa1155260:intron | 40.0% | |
TAAGCTAAAAGGCCTAGTGT+AGG | + | chr7_4:43170542-43170561 | None:intergenic | 40.0% | |
CAACAACAGAAGTTCCACTT+GGG | + | chr7_4:43170628-43170647 | None:intergenic | 40.0% | |
TCAACAACAGAAGTTCCACT+TGG | + | chr7_4:43170629-43170648 | None:intergenic | 40.0% | |
AGTGGAACTTCTGTTGTTGA+AGG | - | chr7_4:43170629-43170648 | Msa1155260:CDS | 40.0% | |
ATAGAAGTTCCTGCATCAAG+TGG | + | chr7_4:43170713-43170732 | None:intergenic | 40.0% | |
CTGTATGGTTTCGTCATTGA+TGG | - | chr7_4:43170735-43170754 | Msa1155260:intron | 40.0% | |
TAACACAGATGACTACCTCA+TGG | - | chr7_4:43170758-43170777 | Msa1155260:intron | 40.0% | |
AGATGACTACCTCATGGTAA+TGG | - | chr7_4:43170764-43170783 | Msa1155260:intron | 40.0% | |
AAGTGTAAGCCATTACCATG+AGG | + | chr7_4:43170776-43170795 | None:intergenic | 40.0% | |
GAGAGTGAATTTACGAAAGG+GGG | + | chr7_4:43171061-43171080 | None:intergenic | 40.0% | |
! | TCTTTTACCCAAAACTCTGC+TGG | - | chr7_4:43171121-43171140 | Msa1155260:intron | 40.0% |
! | CCATTATCCAGCAGAGTTTT+GGG | + | chr7_4:43171131-43171150 | None:intergenic | 40.0% |
! | TCCATTATCCAGCAGAGTTT+TGG | + | chr7_4:43171132-43171151 | None:intergenic | 40.0% |
GTTTGCAACTATAGTTGGAG+TGG | - | chr7_4:43171203-43171222 | Msa1155260:intron | 40.0% | |
CTAAGGATGGAGCTAAGTAA+GGG | + | chr7_4:43171384-43171403 | None:intergenic | 40.0% | |
ACTAAGGATGGAGCTAAGTA+AGG | + | chr7_4:43171385-43171404 | None:intergenic | 40.0% | |
GCAGTAGTCAAGTGATGAAA+AGG | + | chr7_4:43171453-43171472 | None:intergenic | 40.0% | |
ATGGCAAAAAGCAGTGTTAC+TGG | + | chr7_4:43171569-43171588 | None:intergenic | 40.0% | |
!!! | TAACACTGCTTTTTGCCATC+AGG | - | chr7_4:43171570-43171589 | Msa1155260:intron | 40.0% |
! | ATTTTCAGATGCTGTCCTGA+TGG | + | chr7_4:43171588-43171607 | None:intergenic | 40.0% |
!! | ATAAAGCTTGTTGGACCTGA+AGG | - | chr7_4:43171724-43171743 | Msa1155260:CDS | 40.0% |
!! | TAAAGCTTGTTGGACCTGAA+GGG | - | chr7_4:43171725-43171744 | Msa1155260:CDS | 40.0% |
TAGATGTCCAGTCAGCAATA+TGG | - | chr7_4:43171767-43171786 | Msa1155260:intron | 40.0% | |
AGATGTCCAGTCAGCAATAT+GGG | - | chr7_4:43171768-43171787 | Msa1155260:intron | 40.0% | |
CTTCCTGGCTATCAATGATA+AGG | + | chr7_4:43172173-43172192 | None:intergenic | 40.0% | |
!! | CATACTGTTTGCTATCTTCC+TGG | + | chr7_4:43172188-43172207 | None:intergenic | 40.0% |
TCATTTGCCATTCTGCTCAA+AGG | + | chr7_4:43172345-43172364 | None:intergenic | 40.0% | |
TTCGACACGCCCTTAAAAAT+TGG | - | chr7_4:43172696-43172715 | Msa1155260:five_prime_UTR | 40.0% | |
TCGACACGCCCTTAAAAATT+GGG | - | chr7_4:43172697-43172716 | Msa1155260:five_prime_UTR | 40.0% | |
! | ATCGTCGCCCCAATTTTTAA+GGG | + | chr7_4:43172708-43172727 | None:intergenic | 40.0% |
CAAAGTAGGCGCAAATCAAG+AGG | - | chr7_4:43166393-43166412 | Msa1155260:three_prime_UTR | 45.0% | |
CGCAAATCAAGAGGTAGCAA+TGG | - | chr7_4:43166402-43166421 | Msa1155260:three_prime_UTR | 45.0% | |
AGCTCGAAACTTTCTTGCAG+TGG | - | chr7_4:43166440-43166459 | Msa1155260:three_prime_UTR | 45.0% | |
AACTTTCTTGCAGTGGCTAC+AGG | - | chr7_4:43166447-43166466 | Msa1155260:three_prime_UTR | 45.0% | |
!! | GGCTACAGGTTTGTTAACTC+TGG | - | chr7_4:43166461-43166480 | Msa1155260:three_prime_UTR | 45.0% |
TTGAATTCAGGCAAATGGGG+TGG | - | chr7_4:43166589-43166608 | Msa1155260:CDS | 45.0% | |
!!! | GTCCATCAGTTGCTGTTTTC+AGG | + | chr7_4:43166996-43167015 | None:intergenic | 45.0% |
AAGCACCTGTGACACTGTTT+GGG | + | chr7_4:43167046-43167065 | None:intergenic | 45.0% | |
TAAGCACCTGTGACACTGTT+TGG | + | chr7_4:43167047-43167066 | None:intergenic | 45.0% | |
GGATCTTGCAATACCCTCAT+TGG | + | chr7_4:43167320-43167339 | None:intergenic | 45.0% | |
GTTTGCGCAAGGATTCTCTA+TGG | - | chr7_4:43167426-43167445 | Msa1155260:intron | 45.0% | |
TTGGGAGTTTCACTCACTTG+TGG | - | chr7_4:43167505-43167524 | Msa1155260:intron | 45.0% | |
GAGGAACTTCAAGAGCTAAG+AGG | - | chr7_4:43167600-43167619 | Msa1155260:intron | 45.0% | |
! | AAAACATGCTGGTTGTCCAG+TGG | - | chr7_4:43167749-43167768 | Msa1155260:CDS | 45.0% |
GCTACATACCCATTACACCA+TGG | + | chr7_4:43168217-43168236 | None:intergenic | 45.0% | |
ATCTTCAAAGCACACCTCTC+TGG | + | chr7_4:43168887-43168906 | None:intergenic | 45.0% | |
GACTTCAACTAACTCCTTGG+AGG | - | chr7_4:43168948-43168967 | Msa1155260:intron | 45.0% | |
! | GCAATGGAGTGTTCAAAGCA+CGG | + | chr7_4:43169022-43169041 | None:intergenic | 45.0% |
CTAAATGGAGACCCATCCAT+TGG | + | chr7_4:43169224-43169243 | None:intergenic | 45.0% | |
ACTACACATAGCACAGTGCA+AGG | - | chr7_4:43169339-43169358 | Msa1155260:intron | 45.0% | |
AGTGCAAGGAGACACTGTTT+GGG | - | chr7_4:43169353-43169372 | Msa1155260:intron | 45.0% | |
GGTTGCAAAAGTCAATGCCA+GGG | + | chr7_4:43169392-43169411 | None:intergenic | 45.0% | |
TGGTTGCAAAAGTCAATGCC+AGG | + | chr7_4:43169393-43169412 | None:intergenic | 45.0% | |
!!! | GGCATTGACTTTTGCAACCA+TGG | - | chr7_4:43169393-43169412 | Msa1155260:intron | 45.0% |
!!! | CACTAGGCCTTTTAGCTTAC+TGG | - | chr7_4:43170543-43170562 | Msa1155260:intron | 45.0% |
AGCGAGTCCAGTAAGCTAAA+AGG | + | chr7_4:43170553-43170572 | None:intergenic | 45.0% | |
ACTAAATGCATGAGCCCAAG+TGG | - | chr7_4:43170611-43170630 | Msa1155260:CDS | 45.0% | |
TTCAGTTTCTGTTGTCCCTC+AGG | - | chr7_4:43170870-43170889 | Msa1155260:intron | 45.0% | |
!! | CTGAAGGATAATGGACCTGA+GGG | + | chr7_4:43170888-43170907 | None:intergenic | 45.0% |
!! | TCTGAAGGATAATGGACCTG+AGG | + | chr7_4:43170889-43170908 | None:intergenic | 45.0% |
ATACCTGCACTTCAAGAAGC+TGG | + | chr7_4:43170948-43170967 | None:intergenic | 45.0% | |
CCCAAAACTCTGCTGGATAA+TGG | - | chr7_4:43171128-43171147 | Msa1155260:intron | 45.0% | |
GAAAAGCTCATCCTCTTGCA+TGG | + | chr7_4:43171303-43171322 | None:intergenic | 45.0% | |
! | GCAAGAGGATGAGCTTTTCA+AGG | - | chr7_4:43171304-43171323 | Msa1155260:intron | 45.0% |
GGTTTCGTCAATGCTTGAAG+AGG | - | chr7_4:43171325-43171344 | Msa1155260:intron | 45.0% | |
GCAGTTTCAGTGACTAAGGA+TGG | + | chr7_4:43171397-43171416 | None:intergenic | 45.0% | |
! | TTTCTGCTATTTGGCCCGTT+TGG | - | chr7_4:43171487-43171506 | Msa1155260:CDS | 45.0% |
!! | AAAGCTTGTTGGACCTGAAG+GGG | - | chr7_4:43171726-43171745 | Msa1155260:CDS | 45.0% |
GATAATTGTCTCTCCCCTTC+AGG | + | chr7_4:43171742-43171761 | None:intergenic | 45.0% | |
AAACCTCCCATATTGCTGAC+TGG | + | chr7_4:43171777-43171796 | None:intergenic | 45.0% | |
TCAGCAATATGGGAGGTTTG+CGG | - | chr7_4:43171778-43171797 | Msa1155260:intron | 45.0% | |
! | CAATCAGAAGCATGCAGTGT+AGG | + | chr7_4:43171940-43171959 | None:intergenic | 45.0% |
!! | ATGGACCTTGAAGAGCATTC+TGG | - | chr7_4:43172111-43172130 | Msa1155260:intron | 45.0% |
CTGTTCCAGAATGCTCTTCA+AGG | + | chr7_4:43172119-43172138 | None:intergenic | 45.0% | |
!! | TGAAGAGCATTCTGGAACAG+AGG | - | chr7_4:43172119-43172138 | Msa1155260:intron | 45.0% |
CAGAATGGCAAATGACTCAG+AGG | - | chr7_4:43172350-43172369 | Msa1155260:intron | 45.0% | |
CGACACGCCCTTAAAAATTG+GGG | - | chr7_4:43172698-43172717 | Msa1155260:five_prime_UTR | 45.0% | |
! | CATCGTCGCCCCAATTTTTA+AGG | + | chr7_4:43172709-43172728 | None:intergenic | 45.0% |
!!! | TTGCTGTTTTCAGGGCCGTT+TGG | + | chr7_4:43166987-43167006 | None:intergenic | 50.0% |
GCCCTGAAAACAGCAACTGA+TGG | - | chr7_4:43166991-43167010 | Msa1155260:intron | 50.0% | |
TCCAGTGGTCATCCATGTGT+TGG | - | chr7_4:43167764-43167783 | Msa1155260:CDS | 50.0% | |
ACCAACACATGGATGACCAC+TGG | + | chr7_4:43167768-43167787 | None:intergenic | 50.0% | |
GATTGCTCTCTTCTGAGCTC+AGG | - | chr7_4:43167842-43167861 | Msa1155260:CDS | 50.0% | |
! | GCACACCTCTCTGGAAAAAC+AGG | + | chr7_4:43168878-43168897 | None:intergenic | 50.0% |
GAGAGAGAGAGAGAGAGAGA+TGG | + | chr7_4:43169120-43169139 | None:intergenic | 50.0% | |
CTGTGACGTCTCCAATGGAT+GGG | - | chr7_4:43169210-43169229 | Msa1155260:intron | 50.0% | |
CAGTGCAAGGAGACACTGTT+TGG | - | chr7_4:43169352-43169371 | Msa1155260:intron | 50.0% | |
!! | AGGAGACACTGTTTGGGTTG+AGG | - | chr7_4:43169359-43169378 | Msa1155260:intron | 50.0% |
!! | GGAGACACTGTTTGGGTTGA+GGG | - | chr7_4:43169360-43169379 | Msa1155260:intron | 50.0% |
TGCATGTCTGGATTTGTGGC+TGG | - | chr7_4:43169644-43169663 | Msa1155260:CDS | 50.0% | |
!! | ACATGGGAAGTTGATGGGAC+TGG | - | chr7_4:43169778-43169797 | Msa1155260:intron | 50.0% |
!! | GATGGGACTGGCTTAACAAC+AGG | - | chr7_4:43169790-43169809 | Msa1155260:intron | 50.0% |
GAGCACGTGGAAAGCTCATA+TGG | + | chr7_4:43170408-43170427 | None:intergenic | 50.0% | |
TTGAACCAGAACTGAGCACG+TGG | + | chr7_4:43170421-43170440 | None:intergenic | 50.0% | |
AAGCCAGCTTCTTGAAGTGC+AGG | - | chr7_4:43170942-43170961 | Msa1155260:intron | 50.0% | |
!!! | CCACTGTTTTTGGTGCCTGA+TGG | + | chr7_4:43171161-43171180 | None:intergenic | 50.0% |
CCATCAGGCACCAAAAACAG+TGG | - | chr7_4:43171158-43171177 | Msa1155260:intron | 50.0% | |
TTGCATGGCTATGGTCCTCA+AGG | + | chr7_4:43171288-43171307 | None:intergenic | 50.0% | |
CTCATCCTCTTGCATGGCTA+TGG | + | chr7_4:43171297-43171316 | None:intergenic | 50.0% | |
TGTCCAGTCAGCAATATGGG+AGG | - | chr7_4:43171771-43171790 | Msa1155260:intron | 50.0% | |
CTTCATGTCAAGTGAGTGCC+AGG | - | chr7_4:43171835-43171854 | Msa1155260:intron | 50.0% | |
! | GGCCCTTATCATTGATAGCC+AGG | - | chr7_4:43172167-43172186 | Msa1155260:intron | 50.0% |
GCTCTCCCAAACAGTGTCAC+AGG | - | chr7_4:43167038-43167057 | Msa1155260:intron | 55.0% | |
ATTGCGGCGCTATATCGCTG+TGG | - | chr7_4:43168059-43168078 | Msa1155260:intron | 55.0% | |
GTCTCCTGTGACGTCTCCAA+TGG | - | chr7_4:43169205-43169224 | Msa1155260:intron | 55.0% | |
CCATCCATTGGAGACGTCAC+AGG | + | chr7_4:43169212-43169231 | None:intergenic | 55.0% | |
CCTGTGACGTCTCCAATGGA+TGG | - | chr7_4:43169209-43169228 | Msa1155260:intron | 55.0% | |
GCTTTCCACGTGCTCAGTTC+TGG | - | chr7_4:43170413-43170432 | Msa1155260:intron | 55.0% | |
GAGGACCATAGCCATGCAAG+AGG | - | chr7_4:43171289-43171308 | Msa1155260:intron | 55.0% | |
TGGGAGGTTTGCGGTGATTC+TGG | - | chr7_4:43171787-43171806 | Msa1155260:intron | 55.0% | |
GCAAATGGGGTGGAGCTACG+AGG | - | chr7_4:43166599-43166618 | Msa1155260:CDS | 60.0% | |
! | GACAGTGGAGCGTTTGCGCA+AGG | - | chr7_4:43167415-43167434 | Msa1155260:intron | 60.0% |
! | TGGGTTGAGGGTCTTGTCCC+TGG | - | chr7_4:43169372-43169391 | Msa1155260:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 43166277 | 43172777 | 43166277 | ID=Msa1155260;Name=Msa1155260 |
chr7_4 | mRNA | 43166277 | 43172777 | 43166277 | ID=Msa1155260-mRNA-1;Parent=Msa1155260;Name=Msa1155260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=144|0.92|1|1|0.92|0.93|15|268|538 |
chr7_4 | exon | 43166277 | 43166701 | 43166277 | ID=Msa1155260-mRNA-1:exon:10808;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43166852 | 43166947 | 43166852 | ID=Msa1155260-mRNA-1:exon:10807;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43167209 | 43167324 | 43167209 | ID=Msa1155260-mRNA-1:exon:10806;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43167708 | 43167950 | 43167708 | ID=Msa1155260-mRNA-1:exon:10805;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43168091 | 43168162 | 43168091 | ID=Msa1155260-mRNA-1:exon:10804;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43168275 | 43168331 | 43168275 | ID=Msa1155260-mRNA-1:exon:10803;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43168972 | 43169036 | 43168972 | ID=Msa1155260-mRNA-1:exon:10802;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43169213 | 43169293 | 43169213 | ID=Msa1155260-mRNA-1:exon:10801;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43169640 | 43169753 | 43169640 | ID=Msa1155260-mRNA-1:exon:10800;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43169944 | 43170056 | 43169944 | ID=Msa1155260-mRNA-1:exon:10799;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43170594 | 43170676 | 43170594 | ID=Msa1155260-mRNA-1:exon:10798;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43171401 | 43171506 | 43171401 | ID=Msa1155260-mRNA-1:exon:10797;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43171601 | 43171775 | 43171601 | ID=Msa1155260-mRNA-1:exon:10796;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43172365 | 43172455 | 43172365 | ID=Msa1155260-mRNA-1:exon:10795;Parent=Msa1155260-mRNA-1 |
chr7_4 | exon | 43172586 | 43172777 | 43172586 | ID=Msa1155260-mRNA-1:exon:10794;Parent=Msa1155260-mRNA-1 |
chr7_4 | five_prime_UTR | 43172634 | 43172777 | 43172634 | ID=Msa1155260-mRNA-1:five_prime_utr;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43172586 | 43172633 | 43172586 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43172365 | 43172455 | 43172365 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43171601 | 43171775 | 43171601 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43171401 | 43171506 | 43171401 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43170594 | 43170676 | 43170594 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43169944 | 43170056 | 43169944 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43169640 | 43169753 | 43169640 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43169213 | 43169293 | 43169213 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43168972 | 43169036 | 43168972 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43168275 | 43168331 | 43168275 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43168091 | 43168162 | 43168091 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43167708 | 43167950 | 43167708 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43167209 | 43167324 | 43167209 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43166852 | 43166947 | 43166852 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | CDS | 43166545 | 43166701 | 43166545 | ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1 |
chr7_4 | three_prime_UTR | 43166277 | 43166544 | 43166277 | ID=Msa1155260-mRNA-1:three_prime_utr;Parent=Msa1155260-mRNA-1 |
Gene Sequence |
Protein sequence |