AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1155260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155260 MtrunA17_Chr7g0246961 96.154 546 12 1 1 537 1 546 0.0 1074
Msa1155260 MtrunA17_Chr4g0042701 29.814 322 153 15 2 309 49 311 1.78e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155260 AT1G01920.2 62.000 550 187 6 1 534 3 546 0.0 682
Msa1155260 AT1G01920.1 60.000 575 183 8 1 534 3 571 0.0 672
Msa1155260 AT1G01920.5 62.851 498 168 5 5 486 7 503 0.0 628
Msa1155260 AT1G01920.4 62.076 501 170 5 48 534 8 502 0.0 626
Msa1155260 AT1G01920.3 64.103 429 137 5 5 417 7 434 0.0 556
Msa1155260 AT1G14030.1 26.299 308 154 13 8 301 49 297 2.73e-11 66.2

Find 114 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGCATTTAAGGTTAA+TGG 0.142609 7_4:-43166940 Msa1155260:intron
CTAGGGCAAATTCAGTATTT+TGG 0.177551 7_4:-43170038 Msa1155260:intron
GTCTCCATGTATCTTCTTTC+CGG 0.213446 7_4:-43169212 Msa1155260:intron
CTTATTGTCAATTCAGTTCT+TGG 0.216783 7_4:-43166459 Msa1155260:three_prime_UTR
GATATGCTTCCAACCACTTT+TGG 0.251963 7_4:-43171477 Msa1155260:CDS
TGGGAGGTTTGCGGTGATTC+TGG 0.254285 7_4:-43167245 Msa1155260:CDS
TCCATTATCCAGCAGAGTTT+TGG 0.254544 7_4:+43167903 None:intergenic
CCCAAAACTCTGCTGGATAA+TGG 0.262041 7_4:-43167904 Msa1155260:CDS
TCCCTTGTTGCCATAACTAA+TGG 0.277594 7_4:+43168978 None:intergenic
CATACTGTTTGCTATCTTCC+TGG 0.278315 7_4:+43166847 None:intergenic
TCAACTTCCCATGTTGCTAT+TGG 0.310003 7_4:+43169263 None:intergenic
GATAATTGTCTCTCCCCTTC+AGG 0.314552 7_4:+43167293 None:intergenic
CGAGAAATTTCCATTAGTTA+TGG 0.330983 7_4:-43168988 Msa1155260:CDS
ATGGACCTTGAAGAGCATTC+TGG 0.342337 7_4:-43166921 Msa1155260:CDS
ATATCGTGCAACTGAGTTAC+AGG 0.349217 7_4:-43171400 Msa1155260:intron
CTGTTCCAGAATGCTCTTCA+AGG 0.349550 7_4:+43166916 None:intergenic
TTCTGTCACATAAAGCTTGT+TGG 0.356885 7_4:-43167317 Msa1155260:intron
CTGTATGGTTTCGTCATTGA+TGG 0.361585 7_4:-43168297 Msa1155260:CDS
TCAAACAATGCTCTACATTC+TGG 0.368765 7_4:+43171682 None:intergenic
CAGTGCAAGGAGACACTGTT+TGG 0.372176 7_4:-43169680 Msa1155260:CDS
TAGATGTCCAGTCAGCAATA+TGG 0.372524 7_4:-43167265 Msa1155260:CDS
TGATTGCTTCTGAAGGATAA+TGG 0.373461 7_4:+43168138 None:intergenic
ACAAAGTTTGCAACTATAGT+TGG 0.373492 7_4:-43167834 Msa1155260:CDS
GGAGACACTGTTTGGGTTGA+GGG 0.388987 7_4:-43169672 Msa1155260:CDS
AACTTTCTTGCAGTGGCTAC+AGG 0.393679 7_4:-43172585 Msa1155260:intron
TGGGTTGAGGGTCTTGTCCC+TGG 0.398663 7_4:-43169660 Msa1155260:CDS
TGATGAACATCTTGCATCTC+AGG 0.399499 7_4:+43169973 None:intergenic
AAAGTTTCGAGCTTTGCATC+TGG 0.402607 7_4:+43172602 None:intergenic
AAGTACTGTGATTCCAGAAA+AGG 0.405051 7_4:-43172400 Msa1155260:CDS
CTTCCTGGCTATCAATGATA+AGG 0.405078 7_4:+43166862 None:intergenic
TGTAGAGCATTGTTTGAAGA+AGG 0.407729 7_4:-43171676 Msa1155260:CDS
GGATCTTGCAATACCCTCAT+TGG 0.414764 7_4:+43171715 None:intergenic
TGTGCTATGTGTAGTTTCCT+TGG 0.421059 7_4:+43169701 None:intergenic
CCAAAGTGTATTTCCAAAAG+TGG 0.431664 7_4:+43171464 None:intergenic
CAGGAACTTCTATATCTGTA+TGG 0.433043 7_4:-43168312 Msa1155260:CDS
AGGAGACACTGTTTGGGTTG+AGG 0.441525 7_4:-43169673 Msa1155260:CDS
TAGTTTCATACAAATTCAAC+AGG 0.442700 7_4:+43170646 None:intergenic
AGATGTCCAGTCAGCAATAT+GGG 0.462315 7_4:-43167264 Msa1155260:CDS
GGCCCTTATCATTGATAGCC+AGG 0.463013 7_4:-43166865 Msa1155260:CDS
GTTTGCGCAAGGATTCTCTA+TGG 0.464632 7_4:-43171606 Msa1155260:CDS
TTCCTGGCTATCAATGATAA+GGG 0.467148 7_4:+43166863 None:intergenic
GATGGGACTGGCTTAACAAC+AGG 0.468779 7_4:-43169242 Msa1155260:CDS
ACAAGCTTATCTACATAAGA+TGG 0.470453 7_4:+43167793 None:intergenic
CTACATTCTGGTCCTAGAAA+AGG 0.477386 7_4:+43171694 None:intergenic
CTCATCCTCTTGCATGGCTA+TGG 0.477615 7_4:+43167738 None:intergenic
TGTGATTCCAGAAAAGGGTT+TGG 0.479557 7_4:-43172394 Msa1155260:CDS
ATAAAGCTTGTTGGACCTGA+AGG 0.482872 7_4:-43167308 Msa1155260:intron
AGTACTGTGATTCCAGAAAA+GGG 0.485791 7_4:-43172399 Msa1155260:CDS
AGTGTATTTCCAAAAGTGGT+TGG 0.489103 7_4:+43171468 None:intergenic
AAGGTAGCCATAAATTTCTC+AGG 0.491005 7_4:+43167766 None:intergenic
AAGCCAGCTTCTTGAAGTGC+AGG 0.498998 7_4:-43168090 Msa1155260:intron
AAGTTTCGAGCTTTGCATCT+GGG 0.499309 7_4:+43172603 None:intergenic
CTAACTTTGGACTAAAGATC+AGG 0.499881 7_4:+43166489 None:intergenic
GATTGTCAGATTTCGTGACT+TGG 0.500107 7_4:+43169727 None:intergenic
TGGTTGCAAAAGTCAATGCC+AGG 0.500246 7_4:+43169642 None:intergenic
CGTTGATGACTAGAAACAAA+TGG 0.502636 7_4:-43166653 Msa1155260:CDS
AGTGCAAGGAGACACTGTTT+GGG 0.515525 7_4:-43169679 Msa1155260:CDS
CAGCTTACATGATTATCTGA+AGG 0.517761 7_4:-43166436 Msa1155260:three_prime_UTR
ATAGCAACATGGGAAGTTGA+TGG 0.520731 7_4:-43169260 Msa1155260:CDS
GGAGTAATTGATAATTCTAG+TGG 0.523042 7_4:+43171736 None:intergenic
TCCATTAGTTATGGCAACAA+GGG 0.530233 7_4:-43168979 Msa1155260:CDS
AGCTCGAAACTTTCTTGCAG+TGG 0.538099 7_4:-43172592 Msa1155260:CDS
GACAGTGGAGCGTTTGCGCA+AGG 0.539091 7_4:-43171617 Msa1155260:CDS
ATACCTGCACTTCAAGAAGC+TGG 0.540029 7_4:+43168087 None:intergenic
TTCCATTAGTTATGGCAACA+AGG 0.540060 7_4:-43168980 Msa1155260:CDS
TGACTTTGAATTGCTCAAGA+AGG 0.541013 7_4:-43166886 Msa1155260:CDS
TGAAGAGCATTCTGGAACAG+AGG 0.541888 7_4:-43166913 Msa1155260:CDS
TTGCATGGCTATGGTCCTCA+AGG 0.545540 7_4:+43167747 None:intergenic
AGCTTACATGATTATCTGAA+GGG 0.547777 7_4:-43166435 Msa1155260:three_prime_UTR
GAAAGAAGATACATGGAGAC+AGG 0.550561 7_4:+43169215 None:intergenic
ACTCCAAAAGCTGATGAAAA+CGG 0.554851 7_4:-43169943 Msa1155260:intron
ACATGGGAAGTTGATGGGAC+TGG 0.560853 7_4:-43169254 Msa1155260:CDS
TTGAATTCAGGCAAATGGGG+TGG 0.561077 7_4:-43172443 Msa1155260:intron
CGCAAATCAAGAGGTAGCAA+TGG 0.561397 7_4:-43172630 Msa1155260:exon
AAGTGGTTGGAAGCATATCA+AGG 0.561594 7_4:+43171481 None:intergenic
TAGCAACATGGGAAGTTGAT+GGG 0.562500 7_4:-43169259 Msa1155260:CDS
AATACATAAGAACGAGGCAA+TGG 0.562764 7_4:+43169997 None:intergenic
AAGAAGGAGATGTAGATGAC+AGG 0.563546 7_4:-43171660 Msa1155260:CDS
TTATGGCAACAAGGGAAATG+AGG 0.564716 7_4:-43168971 Msa1155260:intron
TAAAGCTTGTTGGACCTGAA+GGG 0.565102 7_4:-43167307 Msa1155260:intron
ATAGTATTGATTGCTTCTGA+AGG 0.567549 7_4:+43168131 None:intergenic
TCAGCAATATGGGAGGTTTG+CGG 0.572266 7_4:-43167254 Msa1155260:CDS
ATTATCAATTACTCCAATGA+GGG 0.574443 7_4:-43171728 Msa1155260:CDS
TTTGTATGAAACTAAAGTGA+AGG 0.575323 7_4:-43170637 Msa1155260:CDS
ATCTGAAGCCAATAGCAACA+TGG 0.576295 7_4:-43169271 Msa1155260:CDS
GTTACCGGAAAGAAGATACA+TGG 0.577935 7_4:+43169208 None:intergenic
AATGATGTTGTTATTGACAG+TGG 0.579816 7_4:-43171632 Msa1155260:CDS
TGTGATAAAGATGTTTCTGA+TGG 0.581741 7_4:-43172364 Msa1155260:intron
GAGGAACTTCAAGAGCTAAG+AGG 0.585300 7_4:-43171432 Msa1155260:CDS
TACACTTTGGTTTAGTGACG+AGG 0.587689 7_4:-43171451 Msa1155260:CDS
GAAAAGCTCATCCTCTTGCA+TGG 0.596233 7_4:+43167732 None:intergenic
GTTTGCAACTATAGTTGGAG+TGG 0.596685 7_4:-43167829 Msa1155260:CDS
AAAGCTTGTTGGACCTGAAG+GGG 0.597163 7_4:-43167306 Msa1155260:intron
AAACCTCCCATATTGCTGAC+TGG 0.603393 7_4:+43167258 None:intergenic
TCTGAAGCCAATAGCAACAT+GGG 0.609278 7_4:-43169270 Msa1155260:CDS
AATTATCAATTACTCCAATG+AGG 0.609295 7_4:-43171729 Msa1155260:CDS
GGTTTCGTCAATGCTTGAAG+AGG 0.612106 7_4:-43167707 Msa1155260:intron
ACTACACATAGCACAGTGCA+AGG 0.619661 7_4:-43169693 Msa1155260:CDS
CAAAGTAGGCGCAAATCAAG+AGG 0.619679 7_4:-43172639 Msa1155260:five_prime_UTR
ATTTCTCGATCAATCTGCAA+GGG 0.622050 7_4:+43169003 None:intergenic
AATTTCTCGATCAATCTGCA+AGG 0.626269 7_4:+43169002 None:intergenic
GCAATGGAGTGTTCAAAGCA+CGG 0.630375 7_4:+43170013 None:intergenic
ACTAAAGATCAGGTAACAAG+AGG 0.636655 7_4:+43166499 None:intergenic
GAGGACCATAGCCATGCAAG+AGG 0.645533 7_4:-43167743 Msa1155260:CDS
CAGAATGGCAAATGACTCAG+AGG 0.653745 7_4:-43166682 Msa1155260:CDS
TAACACAGATGACTACCTCA+TGG 0.656026 7_4:-43168274 Msa1155260:intron
AGAAATTTATGGCTACCTTG+AGG 0.656692 7_4:-43167762 Msa1155260:CDS
AGGAACTTTACAATGTGACA+TGG 0.661088 7_4:+43166519 None:intergenic
GGTTGCAAAAGTCAATGCCA+GGG 0.664466 7_4:+43169643 None:intergenic
GAAATCTGACAATCTAACCA+AGG 0.669830 7_4:-43169718 Msa1155260:CDS
GCAAATGGGGTGGAGCTACG+AGG 0.694142 7_4:-43172433 Msa1155260:CDS
TCTGCTATTGTATATAGACG+AGG 0.714826 7_4:-43166630 Msa1155260:CDS
TGTCCAGTCAGCAATATGGG+AGG 0.717026 7_4:-43167261 Msa1155260:CDS
TCAGGAAATACATAAGAACG+AGG 0.734559 7_4:+43169991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATTTTATTTTACTTTA+TGG - chr7_4:43167463-43167482 Msa1155260:intron 10.0%
!!! AGAATGTTTTTTAAAATTTT+GGG + chr7_4:43167810-43167829 None:intergenic 10.0%
!! TTAAAATTGATATTAAAGTA+AGG - chr7_4:43169264-43169283 Msa1155260:CDS 10.0%
!!! TCATATAAAAAGTATATAAA+GGG + chr7_4:43169512-43169531 None:intergenic 10.0%
!!! ATCATATAAAAAGTATATAA+AGG + chr7_4:43169513-43169532 None:intergenic 10.0%
!!! TTAGTCAATAAATATATTTT+AGG + chr7_4:43171915-43171934 None:intergenic 10.0%
!! AAAATTGTTTACAAAAAGTA+AGG + chr7_4:43167181-43167200 None:intergenic 15.0%
!!! TTATTTGTTTTCAAAAAGTA+AGG + chr7_4:43167232-43167251 None:intergenic 15.0%
!!! TTTTGTTTTTCTTTGAAAAA+AGG - chr7_4:43167257-43167276 Msa1155260:CDS 15.0%
!!! TTTGTTTTTCTTTGAAAAAA+GGG - chr7_4:43167258-43167277 Msa1155260:CDS 15.0%
!! AATAAAATAAACCATACATA+CGG + chr7_4:43167455-43167474 None:intergenic 15.0%
!!! CAGAATGTTTTTTAAAATTT+TGG + chr7_4:43167811-43167830 None:intergenic 15.0%
!!! AGTTTGATTTAAATATTGTT+AGG - chr7_4:43168569-43168588 Msa1155260:intron 15.0%
!!! CATATAAAAAGTATATAAAG+GGG + chr7_4:43169511-43169530 None:intergenic 15.0%
!! AAGAAAAACAATGAATTAAA+GGG + chr7_4:43169988-43170007 None:intergenic 15.0%
!! TAAAGTTGAAGATAAATTAT+TGG + chr7_4:43170972-43170991 None:intergenic 15.0%
!!! CTATGCAATATTTTTTTTAA+TGG - chr7_4:43171356-43171375 Msa1155260:intron 15.0%
!! AATAAGTAAAAATCTAACTT+TGG + chr7_4:43172559-43172578 None:intergenic 15.0%
!! TACTTTGACAAGAAAAAAAA+TGG + chr7_4:43166380-43166399 None:intergenic 20.0%
!!! ATTTTTTTTCTTGTCAAAGT+AGG - chr7_4:43166379-43166398 Msa1155260:three_prime_UTR 20.0%
!!! CATAGTTTTGAATTTTGATT+TGG - chr7_4:43166564-43166583 Msa1155260:CDS 20.0%
!!! TTTTCATAAGCTCAAAAATA+AGG - chr7_4:43166957-43166976 Msa1155260:intron 20.0%
!! AAATTAACTATGTTTACTCA+AGG + chr7_4:43167883-43167902 None:intergenic 20.0%
!!! TAAACATAGTTAATTTGAAG+CGG - chr7_4:43167887-43167906 Msa1155260:CDS 20.0%
!!! TTCTAGTTTATGTTTTTAAG+TGG - chr7_4:43168495-43168514 Msa1155260:intron 20.0%
!! TAAGATGTCAAAATTTCAAT+AGG + chr7_4:43168548-43168567 None:intergenic 20.0%
!! TTATGTCAATCATGTTAATT+TGG - chr7_4:43168593-43168612 Msa1155260:intron 20.0%
!! TAGTATATTTAGTGCAATAA+TGG + chr7_4:43168693-43168712 None:intergenic 20.0%
!!! TTTTTAAGTTTATACGTTCA+AGG - chr7_4:43168733-43168752 Msa1155260:intron 20.0%
!!! TGTTTGAAACTTAAAAATTG+CGG + chr7_4:43168826-43168845 None:intergenic 20.0%
!! AAAATCAGAGAAATACTAAA+TGG + chr7_4:43169239-43169258 None:intergenic 20.0%
!!! TAGTATTTCTCTGATTTTTT+TGG - chr7_4:43169241-43169260 Msa1155260:CDS 20.0%
!! ATTAATGACCAATATTTGTA+AGG + chr7_4:43169562-43169581 None:intergenic 20.0%
!!! ATTTTATGAAACTACCTAAA+TGG + chr7_4:43169945-43169964 None:intergenic 20.0%
!! AGAAAAACAATGAATTAAAG+GGG + chr7_4:43169987-43170006 None:intergenic 20.0%
!! CAAGAAAAACAATGAATTAA+AGG + chr7_4:43169989-43170008 None:intergenic 20.0%
!!! CTTTAATTCATTGTTTTTCT+TGG - chr7_4:43169987-43170006 Msa1155260:CDS 20.0%
!! GAAAAAAATCAATCAATCAT+GGG + chr7_4:43170100-43170119 None:intergenic 20.0%
!! AGAAAAAAATCAATCAATCA+TGG + chr7_4:43170101-43170120 None:intergenic 20.0%
!!! TTTCTTCTTCTATTTTTCTA+TGG - chr7_4:43170116-43170135 Msa1155260:intron 20.0%
!! TTTGATAGATCATAACATAT+TGG + chr7_4:43170357-43170376 None:intergenic 20.0%
!!! TTAGGTATAAATTTTAGTCT+TGG + chr7_4:43170811-43170830 None:intergenic 20.0%
!! AACAATAGATAATGTCAAAT+AGG + chr7_4:43171029-43171048 None:intergenic 20.0%
!!! ATATGATTTTTTCTGCTATT+TGG - chr7_4:43171478-43171497 Msa1155260:CDS 20.0%
!! ATATATACAATCAACTGTTA+TGG + chr7_4:43171874-43171893 None:intergenic 20.0%
!! GTGAAAATATGAAAACAATT+AGG + chr7_4:43172077-43172096 None:intergenic 20.0%
!! TCAATATATTGTAGGAAAAT+TGG + chr7_4:43172294-43172313 None:intergenic 20.0%
!! CAAAAACATCAATATATTGT+AGG + chr7_4:43172302-43172321 None:intergenic 20.0%
!!! AAAAAAATGGTGATGGTTTA+AGG + chr7_4:43166367-43166386 None:intergenic 25.0%
!! TAACTCTGGTTTGTAATTTA+AGG - chr7_4:43166475-43166494 Msa1155260:three_prime_UTR 25.0%
!! GTTTGTAATTTAAGGCATAA+TGG - chr7_4:43166483-43166502 Msa1155260:three_prime_UTR 25.0%
!!! TTAGCTTTTATACCATTCTT+TGG - chr7_4:43166516-43166535 Msa1155260:three_prime_UTR 25.0%
! TTTGAAAATTCACCAAAGAA+TGG + chr7_4:43166531-43166550 None:intergenic 25.0%
!! TCTTTGGTGAATTTTCAAAA+TGG - chr7_4:43166532-43166551 Msa1155260:exon 25.0%
!!! TTTGATTTGGTTTTGAATTC+AGG - chr7_4:43166577-43166596 Msa1155260:CDS 25.0%
! TGTACTAATATCAGTATGAA+TGG - chr7_4:43166697-43166716 Msa1155260:intron 25.0%
!!! GACTTTTTTTTTTGCTTCAT+TGG + chr7_4:43167113-43167132 None:intergenic 25.0%
! ATAGCAATAAACACTATTCA+GGG + chr7_4:43167206-43167225 None:intergenic 25.0%
! AATTATCAATTACTCCAATG+AGG - chr7_4:43167303-43167322 Msa1155260:CDS 25.0%
! ATTATCAATTACTCCAATGA+GGG - chr7_4:43167304-43167323 Msa1155260:CDS 25.0%
! TAAATTAGCTAGTAAAACAC+AGG + chr7_4:43167710-43167729 None:intergenic 25.0%
! GCATTATTAATAAAACATGC+TGG - chr7_4:43167738-43167757 Msa1155260:CDS 25.0%
! TTGTAGTAAATAATGTATCG+TGG + chr7_4:43168019-43168038 None:intergenic 25.0%
! TTGTTATATAGAGTCAATTG+CGG - chr7_4:43168043-43168062 Msa1155260:intron 25.0%
! TATATTAGAAAAGCTAGGTT+TGG + chr7_4:43168190-43168209 None:intergenic 25.0%
! GAGATTATATTAGAAAAGCT+AGG + chr7_4:43168195-43168214 None:intergenic 25.0%
!! CTTTTCTAATATAATCTCCA+TGG - chr7_4:43168197-43168216 Msa1155260:intron 25.0%
!!! AACAAATTTAGGCTGTTTTA+TGG - chr7_4:43168270-43168289 Msa1155260:intron 25.0%
!!! ACAAATTTAGGCTGTTTTAT+GGG - chr7_4:43168271-43168290 Msa1155260:intron 25.0%
! TCAAATACTGCTAAATACAA+TGG + chr7_4:43168339-43168358 None:intergenic 25.0%
! TAGTTTCATACAAATTCAAC+AGG + chr7_4:43168389-43168408 None:intergenic 25.0%
! TTTGTATGAAACTAAAGTGA+AGG - chr7_4:43168395-43168414 Msa1155260:intron 25.0%
! GTTTCAATTTATAATCCTGA+AGG + chr7_4:43168778-43168797 None:intergenic 25.0%
! TTTCAAACATACATTTACGA+TGG - chr7_4:43168837-43168856 Msa1155260:intron 25.0%
! AAGTAAGGAAGTTATATTTC+AGG - chr7_4:43169279-43169298 Msa1155260:intron 25.0%
!!! TTCCTTGTTTTTTCATTGAT+TGG - chr7_4:43169471-43169490 Msa1155260:intron 25.0%
!!! TCCTTGTTTTTTCATTGATT+GGG - chr7_4:43169472-43169491 Msa1155260:intron 25.0%
! ACTAAACACCTTACAAATAT+TGG - chr7_4:43169551-43169570 Msa1155260:intron 25.0%
!!! ATTACTTTTCTTGCCATATA+CGG - chr7_4:43169671-43169690 Msa1155260:CDS 25.0%
! TATGTTATGATCTATCAAAG+AGG - chr7_4:43170358-43170377 Msa1155260:intron 25.0%
! ATTCAAATTGACTGAACAAA+AGG - chr7_4:43170458-43170477 Msa1155260:intron 25.0%
! AACAAAAGGTTTAATAGAAC+TGG - chr7_4:43170472-43170491 Msa1155260:intron 25.0%
!! ATGTCTTGATGGAATTTTAT+TGG + chr7_4:43170514-43170533 None:intergenic 25.0%
!! TGTTTTTCCTGAGAAATTTA+TGG - chr7_4:43171259-43171278 Msa1155260:intron 25.0%
!! AATTAAGTTGCTTATCCAAA+CGG + chr7_4:43171505-43171524 None:intergenic 25.0%
! CAAATGAAAACATAATTGCT+AGG + chr7_4:43171646-43171665 None:intergenic 25.0%
!! CTAGCAATTATGTTTTCATT+TGG - chr7_4:43171644-43171663 Msa1155260:CDS 25.0%
!! TCATATTTTCACTGCATTTA+AGG - chr7_4:43172085-43172104 Msa1155260:intron 25.0%
!! TGAAATGCAAGTTTTACTTA+GGG + chr7_4:43172269-43172288 None:intergenic 25.0%
! CTCAAAGGAAATTAAGAAAA+AGG + chr7_4:43172330-43172349 None:intergenic 25.0%
! AACTTTCCACACTAAAAAAT+TGG + chr7_4:43172633-43172652 None:intergenic 25.0%
GACAAGAAAAAAAATGGTGA+TGG + chr7_4:43166374-43166393 None:intergenic 30.0%
! TGTGATAAAGATGTTTCTGA+TGG - chr7_4:43166668-43166687 Msa1155260:CDS 30.0%
! TGAATGGATTTCATTGTAGA+TGG - chr7_4:43166713-43166732 Msa1155260:intron 30.0%
!! TTGCATAAGTTGTTTTGCAT+AGG + chr7_4:43166807-43166826 None:intergenic 30.0%
TAAGTTGTCACTAACGAAAA+TGG + chr7_4:43166899-43166918 None:intergenic 30.0%
CAAAAATAAGGCAATCCAAA+CGG - chr7_4:43166969-43166988 Msa1155260:intron 30.0%
CATAGCAATAAACACTATTC+AGG + chr7_4:43167207-43167226 None:intergenic 30.0%
TTTGAAAAAAGGGATTCTGT+TGG - chr7_4:43167268-43167287 Msa1155260:CDS 30.0%
! GGAGTAATTGATAATTCTAG+TGG + chr7_4:43167299-43167318 None:intergenic 30.0%
! AATGATGTTGTTATTGACAG+TGG - chr7_4:43167400-43167419 Msa1155260:intron 30.0%
GGTTTACTCAAATTGGTTAA+TGG + chr7_4:43167689-43167708 None:intergenic 30.0%
AAACACAGGTTTACTCAAAT+TGG + chr7_4:43167696-43167715 None:intergenic 30.0%
TTTGACAACACTGTATCATT+CGG + chr7_4:43167942-43167961 None:intergenic 30.0%
! GTTGACTCTATATAACATTC+TGG + chr7_4:43168155-43168174 None:intergenic 30.0%
ATATAATCTCCATGGTGTAA+TGG - chr7_4:43168205-43168224 Msa1155260:intron 30.0%
TATAATCTCCATGGTGTAAT+GGG - chr7_4:43168206-43168225 Msa1155260:intron 30.0%
!!! ATGACTTTTTTGAACCTTTC+AGG - chr7_4:43168245-43168264 Msa1155260:intron 30.0%
!! AAGAAACTTTTGACTCTTGA+CGG - chr7_4:43168426-43168445 Msa1155260:intron 30.0%
!!! GGTTTTGAAATTGAGAACTA+CGG - chr7_4:43168614-43168633 Msa1155260:intron 30.0%
TCCCAATCAATGAAAAAACA+AGG + chr7_4:43169476-43169495 None:intergenic 30.0%
! ATTTGTAAGGTGTTTAGTGA+AGG + chr7_4:43169549-43169568 None:intergenic 30.0%
ATATCAGCTGTTTGATCATA+GGG + chr7_4:43169605-43169624 None:intergenic 30.0%
AATATCAGCTGTTTGATCAT+AGG + chr7_4:43169606-43169625 None:intergenic 30.0%
GTAAATCACATATTCTCATG+AGG + chr7_4:43169720-43169739 None:intergenic 30.0%
TGTGATTTACCTTGATTACA+TGG - chr7_4:43169730-43169749 Msa1155260:CDS 30.0%
TGATTTCTCTCTTTCCATTT+AGG - chr7_4:43169928-43169947 Msa1155260:intron 30.0%
CGAGAAATTTCCATTAGTTA+TGG - chr7_4:43170044-43170063 Msa1155260:intron 30.0%
!! CAGCGAAGTTGATTTTATAT+AGG - chr7_4:43170219-43170238 Msa1155260:intron 30.0%
TTGCATCATATCATGTGAAT+AGG + chr7_4:43170286-43170305 None:intergenic 30.0%
AGAACTGGATCCATAATTTA+CGG - chr7_4:43170487-43170506 Msa1155260:intron 30.0%
! TTTTATTGGCCCGTAAATTA+TGG + chr7_4:43170500-43170519 None:intergenic 30.0%
! GCTTATTTCAAGTGTTAACA+TGG - chr7_4:43170674-43170693 Msa1155260:intron 30.0%
AGGAATGGAAGTAATATGTT+AGG + chr7_4:43170829-43170848 None:intergenic 30.0%
!! ATAGTATTGATTGCTTCTGA+AGG + chr7_4:43170904-43170923 None:intergenic 30.0%
AAATTCACTCTCTGTTATTC+TGG - chr7_4:43171069-43171088 Msa1155260:intron 30.0%
!!! ATTCTGGTTTTGTTTACAGA+AGG - chr7_4:43171085-43171104 Msa1155260:intron 30.0%
!!! GATAATGGATTTTTTCCATC+AGG - chr7_4:43171143-43171162 Msa1155260:intron 30.0%
!! GTTATTTTCTCCACTGTTTT+TGG + chr7_4:43171171-43171190 None:intergenic 30.0%
ACAAAGTTTGCAACTATAGT+TGG - chr7_4:43171198-43171217 Msa1155260:intron 30.0%
ACAAGCTTATCTACATAAGA+TGG + chr7_4:43171242-43171261 None:intergenic 30.0%
! ATTAAGTTGCTTATCCAAAC+GGG + chr7_4:43171504-43171523 None:intergenic 30.0%
TATGGTTGTTATGTAATTCC+TGG + chr7_4:43171856-43171875 None:intergenic 30.0%
TCCTTCTTCAATAAGTGAAA+TGG + chr7_4:43172014-43172033 None:intergenic 30.0%
! TTCACTGCATTTAAGGTTAA+TGG - chr7_4:43172092-43172111 Msa1155260:intron 30.0%
! GTGAAATGCAAGTTTTACTT+AGG + chr7_4:43172270-43172289 None:intergenic 30.0%
TTAATTTCCTTTGAGCAGAA+TGG - chr7_4:43172335-43172354 Msa1155260:intron 30.0%
CTTATTGTCAATTCAGTTCT+TGG - chr7_4:43172573-43172592 Msa1155260:intron 30.0%
AGCTTACATGATTATCTGAA+GGG - chr7_4:43172597-43172616 Msa1155260:CDS 30.0%
!!! TTAGCTCCAATTTTTTAGTG+TGG - chr7_4:43172624-43172643 Msa1155260:exon 30.0%
!!! TGGTTTTGAATTCAGGCAAA+TGG - chr7_4:43166584-43166603 Msa1155260:CDS 35.0%
!!! GGTTTTGAATTCAGGCAAAT+GGG - chr7_4:43166585-43166604 Msa1155260:CDS 35.0%
!! GTTTTGAATTCAGGCAAATG+GGG - chr7_4:43166586-43166605 Msa1155260:CDS 35.0%
! AAGTACTGTGATTCCAGAAA+AGG - chr7_4:43166632-43166651 Msa1155260:CDS 35.0%
AGTACTGTGATTCCAGAAAA+GGG - chr7_4:43166633-43166652 Msa1155260:CDS 35.0%
! AAATATGCCAAACCCTTTTC+TGG + chr7_4:43166648-43166667 None:intergenic 35.0%
! GTATTGCAAGATCCTTTTCT+AGG - chr7_4:43167326-43167345 Msa1155260:intron 35.0%
TCAAACAATGCTCTACATTC+TGG + chr7_4:43167353-43167372 None:intergenic 35.0%
!! TGTAGAGCATTGTTTGAAGA+AGG - chr7_4:43167356-43167375 Msa1155260:intron 35.0%
TTCAGAACTTCAGATTGTGT+TGG - chr7_4:43167486-43167505 Msa1155260:intron 35.0%
TCAGAACTTCAGATTGTGTT+GGG - chr7_4:43167487-43167506 Msa1155260:intron 35.0%
GGAGATGCTGAAATTTAATC+AGG - chr7_4:43167526-43167545 Msa1155260:intron 35.0%
AGTGTATTTCCAAAAGTGGT+TGG + chr7_4:43167567-43167586 None:intergenic 35.0%
CCAAAGTGTATTTCCAAAAG+TGG + chr7_4:43167571-43167590 None:intergenic 35.0%
!! CCACTTTTGGAAATACACTT+TGG - chr7_4:43167568-43167587 Msa1155260:intron 35.0%
TGGTCAATCGCAGAAAATAT+TGG + chr7_4:43168104-43168123 None:intergenic 35.0%
! GATAGATCGAATGTCATTTC+TGG - chr7_4:43168300-43168319 Msa1155260:CDS 35.0%
!! AGATTCTGAGATGTATGTGT+TGG - chr7_4:43168449-43168468 Msa1155260:intron 35.0%
!! GATTCTGAGATGTATGTGTT+GGG - chr7_4:43168450-43168469 Msa1155260:intron 35.0%
!! TGTGCTTTGAAGATTTCCTT+TGG - chr7_4:43168893-43168912 Msa1155260:intron 35.0%
! TCACTAGAAGTACATACCAA+AGG + chr7_4:43168912-43168931 None:intergenic 35.0%
TATGACTTCAACTAACTCCT+TGG - chr7_4:43168945-43168964 Msa1155260:intron 35.0%
! CTAGGGCAAATTCAGTATTT+TGG - chr7_4:43168994-43169013 Msa1155260:CDS 35.0%
AATACATAAGAACGAGGCAA+TGG + chr7_4:43169038-43169057 None:intergenic 35.0%
TCAGGAAATACATAAGAACG+AGG + chr7_4:43169044-43169063 None:intergenic 35.0%
ACTCCAAAAGCTGATGAAAA+CGG - chr7_4:43169089-43169108 Msa1155260:intron 35.0%
! TAACCGTTTTCATCAGCTTT+TGG + chr7_4:43169095-43169114 None:intergenic 35.0%
GAAATCTGACAATCTAACCA+AGG - chr7_4:43169314-43169333 Msa1155260:intron 35.0%
CTTCAAGCAACAATTTACCA+TGG + chr7_4:43169413-43169432 None:intergenic 35.0%
CATACATATACATGCATGTC+TGG - chr7_4:43169632-43169651 Msa1155260:intron 35.0%
ATCTACCATACTACCGTATA+TGG + chr7_4:43169687-43169706 None:intergenic 35.0%
ATTTCTCGATCAATCTGCAA+GGG + chr7_4:43170032-43170051 None:intergenic 35.0%
AATTTCTCGATCAATCTGCA+AGG + chr7_4:43170033-43170052 None:intergenic 35.0%
TTCCATTAGTTATGGCAACA+AGG - chr7_4:43170052-43170071 Msa1155260:intron 35.0%
TCCATTAGTTATGGCAACAA+GGG - chr7_4:43170053-43170072 Msa1155260:intron 35.0%
! GGGAAATGAGGTACTTTATA+TGG - chr7_4:43170073-43170092 Msa1155260:intron 35.0%
TGTTGAATGAGTGAGAATAG+AGG - chr7_4:43170168-43170187 Msa1155260:intron 35.0%
! ATCTATCAAAGAGGTATGCA+AGG - chr7_4:43170367-43170386 Msa1155260:intron 35.0%
! TCTATCAAAGAGGTATGCAA+GGG - chr7_4:43170368-43170387 Msa1155260:intron 35.0%
GAACTGGATCCATAATTTAC+GGG - chr7_4:43170488-43170507 Msa1155260:intron 35.0%
CTGCATCAAGTGGAAAAATA+TGG + chr7_4:43170703-43170722 None:intergenic 35.0%
! CATATTTTTCCACTTGATGC+AGG - chr7_4:43170701-43170720 Msa1155260:intron 35.0%
CAGGAACTTCTATATCTGTA+TGG - chr7_4:43170720-43170739 Msa1155260:intron 35.0%
!!! AAATTTTAGTCTTGGTGCAC+AGG + chr7_4:43170803-43170822 None:intergenic 35.0%
CAACAGAAACAACTAAGGAA+TGG + chr7_4:43170844-43170863 None:intergenic 35.0%
!! CATTCCTTAGTTGTTTCTGT+TGG - chr7_4:43170842-43170861 Msa1155260:intron 35.0%
CATACCAACAGAAACAACTA+AGG + chr7_4:43170849-43170868 None:intergenic 35.0%
! TGATTGCTTCTGAAGGATAA+TGG + chr7_4:43170897-43170916 None:intergenic 35.0%
AGAGAGTGAATTTACGAAAG+GGG + chr7_4:43171062-43171081 None:intergenic 35.0%
CAGAGAGTGAATTTACGAAA+GGG + chr7_4:43171063-43171082 None:intergenic 35.0%
ACAGAGAGTGAATTTACGAA+AGG + chr7_4:43171064-43171083 None:intergenic 35.0%
AAGGTAGCCATAAATTTCTC+AGG + chr7_4:43171269-43171288 None:intergenic 35.0%
AGAAATTTATGGCTACCTTG+AGG - chr7_4:43171270-43171289 Msa1155260:intron 35.0%
AAATGCAGTTTCAGTGACTA+AGG + chr7_4:43171401-43171420 None:intergenic 35.0%
ATGAAAAGGACAGCTATATG+TGG + chr7_4:43171439-43171458 None:intergenic 35.0%
TTCTGTCACATAAAGCTTGT+TGG - chr7_4:43171715-43171734 Msa1155260:CDS 35.0%
AATAAGTGAAATGGCGCATT+TGG + chr7_4:43172005-43172024 None:intergenic 35.0%
GCCATTTCACTTATTGAAGA+AGG - chr7_4:43172010-43172029 Msa1155260:intron 35.0%
TGACTTTGAATTGCTCAAGA+AGG - chr7_4:43172146-43172165 Msa1155260:intron 35.0%
TTCCTGGCTATCAATGATAA+GGG + chr7_4:43172172-43172191 None:intergenic 35.0%
!! CGTTGATGACTAGAAACAAA+TGG - chr7_4:43172379-43172398 Msa1155260:CDS 35.0%
TCTGCTATTGTATATAGACG+AGG - chr7_4:43172402-43172421 Msa1155260:CDS 35.0%
AGGAACTTTACAATGTGACA+TGG + chr7_4:43172516-43172535 None:intergenic 35.0%
ACTAAAGATCAGGTAACAAG+AGG + chr7_4:43172536-43172555 None:intergenic 35.0%
CTAACTTTGGACTAAAGATC+AGG + chr7_4:43172546-43172565 None:intergenic 35.0%
CAGCTTACATGATTATCTGA+AGG - chr7_4:43172596-43172615 Msa1155260:CDS 35.0%
AAGTTTCGAGCTTTGCATCT+GGG + chr7_4:43166432-43166451 None:intergenic 40.0%
AAAGTTTCGAGCTTTGCATC+TGG + chr7_4:43166433-43166452 None:intergenic 40.0%
TGTGATTCCAGAAAAGGGTT+TGG - chr7_4:43166638-43166657 Msa1155260:CDS 40.0%
!!! TCCATCAGTTGCTGTTTTCA+GGG + chr7_4:43166995-43167014 None:intergenic 40.0%
CTACATTCTGGTCCTAGAAA+AGG + chr7_4:43167341-43167360 None:intergenic 40.0%
AAGAAGGAGATGTAGATGAC+AGG - chr7_4:43167372-43167391 Msa1155260:intron 40.0%
CTCTATGGAAACCGTATGTA+TGG - chr7_4:43167441-43167460 Msa1155260:intron 40.0%
! AAGTGGTTGGAAGCATATCA+AGG + chr7_4:43167554-43167573 None:intergenic 40.0%
! GATATGCTTCCAACCACTTT+TGG - chr7_4:43167555-43167574 Msa1155260:intron 40.0%
! TACACTTTGGTTTAGTGACG+AGG - chr7_4:43167581-43167600 Msa1155260:intron 40.0%
ATATCGTGCAACTGAGTTAC+AGG - chr7_4:43167632-43167651 Msa1155260:intron 40.0%
AAAGCACAGAAACCAACACA+TGG + chr7_4:43167779-43167798 None:intergenic 40.0%
CCTCGTATAACATTCTAGTG+TGG + chr7_4:43168124-43168143 None:intergenic 40.0%
CCACACTAGAATGTTATACG+AGG - chr7_4:43168121-43168140 Msa1155260:CDS 40.0%
! CCTAAATTTGTTCGCCTGAA+AGG + chr7_4:43168262-43168281 None:intergenic 40.0%
CCTTTCAGGCGAACAAATTT+AGG - chr7_4:43168259-43168278 Msa1155260:intron 40.0%
ATACCTTCTCAACTACCTTC+AGG - chr7_4:43168760-43168779 Msa1155260:intron 40.0%
AATCCTGAAGGTAGTTGAGA+AGG + chr7_4:43168766-43168785 None:intergenic 40.0%
!! TATGACCTGTTTTTCCAGAG+AGG - chr7_4:43168870-43168889 Msa1155260:intron 40.0%
AAGTCAGATATCAACCTCCA+AGG + chr7_4:43168965-43168984 None:intergenic 40.0%
! ATCTGACTTGCATTCATGCT+AGG - chr7_4:43168976-43168995 Msa1155260:CDS 40.0%
! TCTGACTTGCATTCATGCTA+GGG - chr7_4:43168977-43168996 Msa1155260:CDS 40.0%
TGATGAACATCTTGCATCTC+AGG + chr7_4:43169062-43169081 None:intergenic 40.0%
TCACAGGAGACAATCTTTAC+AGG + chr7_4:43169196-43169215 None:intergenic 40.0%
GATTGTCAGATTTCGTGACT+TGG + chr7_4:43169308-43169327 None:intergenic 40.0%
TGTGCTATGTGTAGTTTCCT+TGG + chr7_4:43169334-43169353 None:intergenic 40.0%
TACATGCATGTCTGGATTTG+TGG - chr7_4:43169640-43169659 Msa1155260:CDS 40.0%
TCTTGCCATATACGGTAGTA+TGG - chr7_4:43169679-43169698 Msa1155260:CDS 40.0%
! TCTGATTGGCCATGTAATCA+AGG + chr7_4:43169742-43169761 None:intergenic 40.0%
!! CTATTGGCTTCAGATCTGAT+TGG + chr7_4:43169756-43169775 None:intergenic 40.0%
! ATCTGAAGCCAATAGCAACA+TGG - chr7_4:43169761-43169780 Msa1155260:intron 40.0%
! TCTGAAGCCAATAGCAACAT+GGG - chr7_4:43169762-43169781 Msa1155260:intron 40.0%
TCAACTTCCCATGTTGCTAT+TGG + chr7_4:43169772-43169791 None:intergenic 40.0%
ATAGCAACATGGGAAGTTGA+TGG - chr7_4:43169772-43169791 Msa1155260:intron 40.0%
! TAGCAACATGGGAAGTTGAT+GGG - chr7_4:43169773-43169792 Msa1155260:intron 40.0%
GAAAGAAGATACATGGAGAC+AGG + chr7_4:43169820-43169839 None:intergenic 40.0%
GTCTCCATGTATCTTCTTTC+CGG - chr7_4:43169820-43169839 Msa1155260:intron 40.0%
GTTACCGGAAAGAAGATACA+TGG + chr7_4:43169827-43169846 None:intergenic 40.0%
ACGCACACAAAGAATGTTAC+CGG + chr7_4:43169842-43169861 None:intergenic 40.0%
TCCCTTGTTGCCATAACTAA+TGG + chr7_4:43170057-43170076 None:intergenic 40.0%
TTATGGCAACAAGGGAAATG+AGG - chr7_4:43170061-43170080 Msa1155260:intron 40.0%
AGGTATGCAAGGGAAACATA+CGG - chr7_4:43170378-43170397 Msa1155260:intron 40.0%
!! GTTCTGGTTCAATGCTTTGT+TGG - chr7_4:43170429-43170448 Msa1155260:intron 40.0%
TGTAGGATGCAATGTCTTGA+TGG + chr7_4:43170525-43170544 None:intergenic 40.0%
AAGACATTGCATCCTACACT+AGG - chr7_4:43170527-43170546 Msa1155260:intron 40.0%
TAAGCTAAAAGGCCTAGTGT+AGG + chr7_4:43170542-43170561 None:intergenic 40.0%
CAACAACAGAAGTTCCACTT+GGG + chr7_4:43170628-43170647 None:intergenic 40.0%
TCAACAACAGAAGTTCCACT+TGG + chr7_4:43170629-43170648 None:intergenic 40.0%
AGTGGAACTTCTGTTGTTGA+AGG - chr7_4:43170629-43170648 Msa1155260:CDS 40.0%
ATAGAAGTTCCTGCATCAAG+TGG + chr7_4:43170713-43170732 None:intergenic 40.0%
CTGTATGGTTTCGTCATTGA+TGG - chr7_4:43170735-43170754 Msa1155260:intron 40.0%
TAACACAGATGACTACCTCA+TGG - chr7_4:43170758-43170777 Msa1155260:intron 40.0%
AGATGACTACCTCATGGTAA+TGG - chr7_4:43170764-43170783 Msa1155260:intron 40.0%
AAGTGTAAGCCATTACCATG+AGG + chr7_4:43170776-43170795 None:intergenic 40.0%
GAGAGTGAATTTACGAAAGG+GGG + chr7_4:43171061-43171080 None:intergenic 40.0%
! TCTTTTACCCAAAACTCTGC+TGG - chr7_4:43171121-43171140 Msa1155260:intron 40.0%
! CCATTATCCAGCAGAGTTTT+GGG + chr7_4:43171131-43171150 None:intergenic 40.0%
! TCCATTATCCAGCAGAGTTT+TGG + chr7_4:43171132-43171151 None:intergenic 40.0%
GTTTGCAACTATAGTTGGAG+TGG - chr7_4:43171203-43171222 Msa1155260:intron 40.0%
CTAAGGATGGAGCTAAGTAA+GGG + chr7_4:43171384-43171403 None:intergenic 40.0%
ACTAAGGATGGAGCTAAGTA+AGG + chr7_4:43171385-43171404 None:intergenic 40.0%
GCAGTAGTCAAGTGATGAAA+AGG + chr7_4:43171453-43171472 None:intergenic 40.0%
ATGGCAAAAAGCAGTGTTAC+TGG + chr7_4:43171569-43171588 None:intergenic 40.0%
!!! TAACACTGCTTTTTGCCATC+AGG - chr7_4:43171570-43171589 Msa1155260:intron 40.0%
! ATTTTCAGATGCTGTCCTGA+TGG + chr7_4:43171588-43171607 None:intergenic 40.0%
!! ATAAAGCTTGTTGGACCTGA+AGG - chr7_4:43171724-43171743 Msa1155260:CDS 40.0%
!! TAAAGCTTGTTGGACCTGAA+GGG - chr7_4:43171725-43171744 Msa1155260:CDS 40.0%
TAGATGTCCAGTCAGCAATA+TGG - chr7_4:43171767-43171786 Msa1155260:intron 40.0%
AGATGTCCAGTCAGCAATAT+GGG - chr7_4:43171768-43171787 Msa1155260:intron 40.0%
CTTCCTGGCTATCAATGATA+AGG + chr7_4:43172173-43172192 None:intergenic 40.0%
!! CATACTGTTTGCTATCTTCC+TGG + chr7_4:43172188-43172207 None:intergenic 40.0%
TCATTTGCCATTCTGCTCAA+AGG + chr7_4:43172345-43172364 None:intergenic 40.0%
TTCGACACGCCCTTAAAAAT+TGG - chr7_4:43172696-43172715 Msa1155260:five_prime_UTR 40.0%
TCGACACGCCCTTAAAAATT+GGG - chr7_4:43172697-43172716 Msa1155260:five_prime_UTR 40.0%
! ATCGTCGCCCCAATTTTTAA+GGG + chr7_4:43172708-43172727 None:intergenic 40.0%
CAAAGTAGGCGCAAATCAAG+AGG - chr7_4:43166393-43166412 Msa1155260:three_prime_UTR 45.0%
CGCAAATCAAGAGGTAGCAA+TGG - chr7_4:43166402-43166421 Msa1155260:three_prime_UTR 45.0%
AGCTCGAAACTTTCTTGCAG+TGG - chr7_4:43166440-43166459 Msa1155260:three_prime_UTR 45.0%
AACTTTCTTGCAGTGGCTAC+AGG - chr7_4:43166447-43166466 Msa1155260:three_prime_UTR 45.0%
!! GGCTACAGGTTTGTTAACTC+TGG - chr7_4:43166461-43166480 Msa1155260:three_prime_UTR 45.0%
TTGAATTCAGGCAAATGGGG+TGG - chr7_4:43166589-43166608 Msa1155260:CDS 45.0%
!!! GTCCATCAGTTGCTGTTTTC+AGG + chr7_4:43166996-43167015 None:intergenic 45.0%
AAGCACCTGTGACACTGTTT+GGG + chr7_4:43167046-43167065 None:intergenic 45.0%
TAAGCACCTGTGACACTGTT+TGG + chr7_4:43167047-43167066 None:intergenic 45.0%
GGATCTTGCAATACCCTCAT+TGG + chr7_4:43167320-43167339 None:intergenic 45.0%
GTTTGCGCAAGGATTCTCTA+TGG - chr7_4:43167426-43167445 Msa1155260:intron 45.0%
TTGGGAGTTTCACTCACTTG+TGG - chr7_4:43167505-43167524 Msa1155260:intron 45.0%
GAGGAACTTCAAGAGCTAAG+AGG - chr7_4:43167600-43167619 Msa1155260:intron 45.0%
! AAAACATGCTGGTTGTCCAG+TGG - chr7_4:43167749-43167768 Msa1155260:CDS 45.0%
GCTACATACCCATTACACCA+TGG + chr7_4:43168217-43168236 None:intergenic 45.0%
ATCTTCAAAGCACACCTCTC+TGG + chr7_4:43168887-43168906 None:intergenic 45.0%
GACTTCAACTAACTCCTTGG+AGG - chr7_4:43168948-43168967 Msa1155260:intron 45.0%
! GCAATGGAGTGTTCAAAGCA+CGG + chr7_4:43169022-43169041 None:intergenic 45.0%
CTAAATGGAGACCCATCCAT+TGG + chr7_4:43169224-43169243 None:intergenic 45.0%
ACTACACATAGCACAGTGCA+AGG - chr7_4:43169339-43169358 Msa1155260:intron 45.0%
AGTGCAAGGAGACACTGTTT+GGG - chr7_4:43169353-43169372 Msa1155260:intron 45.0%
GGTTGCAAAAGTCAATGCCA+GGG + chr7_4:43169392-43169411 None:intergenic 45.0%
TGGTTGCAAAAGTCAATGCC+AGG + chr7_4:43169393-43169412 None:intergenic 45.0%
!!! GGCATTGACTTTTGCAACCA+TGG - chr7_4:43169393-43169412 Msa1155260:intron 45.0%
!!! CACTAGGCCTTTTAGCTTAC+TGG - chr7_4:43170543-43170562 Msa1155260:intron 45.0%
AGCGAGTCCAGTAAGCTAAA+AGG + chr7_4:43170553-43170572 None:intergenic 45.0%
ACTAAATGCATGAGCCCAAG+TGG - chr7_4:43170611-43170630 Msa1155260:CDS 45.0%
TTCAGTTTCTGTTGTCCCTC+AGG - chr7_4:43170870-43170889 Msa1155260:intron 45.0%
!! CTGAAGGATAATGGACCTGA+GGG + chr7_4:43170888-43170907 None:intergenic 45.0%
!! TCTGAAGGATAATGGACCTG+AGG + chr7_4:43170889-43170908 None:intergenic 45.0%
ATACCTGCACTTCAAGAAGC+TGG + chr7_4:43170948-43170967 None:intergenic 45.0%
CCCAAAACTCTGCTGGATAA+TGG - chr7_4:43171128-43171147 Msa1155260:intron 45.0%
GAAAAGCTCATCCTCTTGCA+TGG + chr7_4:43171303-43171322 None:intergenic 45.0%
! GCAAGAGGATGAGCTTTTCA+AGG - chr7_4:43171304-43171323 Msa1155260:intron 45.0%
GGTTTCGTCAATGCTTGAAG+AGG - chr7_4:43171325-43171344 Msa1155260:intron 45.0%
GCAGTTTCAGTGACTAAGGA+TGG + chr7_4:43171397-43171416 None:intergenic 45.0%
! TTTCTGCTATTTGGCCCGTT+TGG - chr7_4:43171487-43171506 Msa1155260:CDS 45.0%
!! AAAGCTTGTTGGACCTGAAG+GGG - chr7_4:43171726-43171745 Msa1155260:CDS 45.0%
GATAATTGTCTCTCCCCTTC+AGG + chr7_4:43171742-43171761 None:intergenic 45.0%
AAACCTCCCATATTGCTGAC+TGG + chr7_4:43171777-43171796 None:intergenic 45.0%
TCAGCAATATGGGAGGTTTG+CGG - chr7_4:43171778-43171797 Msa1155260:intron 45.0%
! CAATCAGAAGCATGCAGTGT+AGG + chr7_4:43171940-43171959 None:intergenic 45.0%
!! ATGGACCTTGAAGAGCATTC+TGG - chr7_4:43172111-43172130 Msa1155260:intron 45.0%
CTGTTCCAGAATGCTCTTCA+AGG + chr7_4:43172119-43172138 None:intergenic 45.0%
!! TGAAGAGCATTCTGGAACAG+AGG - chr7_4:43172119-43172138 Msa1155260:intron 45.0%
CAGAATGGCAAATGACTCAG+AGG - chr7_4:43172350-43172369 Msa1155260:intron 45.0%
CGACACGCCCTTAAAAATTG+GGG - chr7_4:43172698-43172717 Msa1155260:five_prime_UTR 45.0%
! CATCGTCGCCCCAATTTTTA+AGG + chr7_4:43172709-43172728 None:intergenic 45.0%
!!! TTGCTGTTTTCAGGGCCGTT+TGG + chr7_4:43166987-43167006 None:intergenic 50.0%
GCCCTGAAAACAGCAACTGA+TGG - chr7_4:43166991-43167010 Msa1155260:intron 50.0%
TCCAGTGGTCATCCATGTGT+TGG - chr7_4:43167764-43167783 Msa1155260:CDS 50.0%
ACCAACACATGGATGACCAC+TGG + chr7_4:43167768-43167787 None:intergenic 50.0%
GATTGCTCTCTTCTGAGCTC+AGG - chr7_4:43167842-43167861 Msa1155260:CDS 50.0%
! GCACACCTCTCTGGAAAAAC+AGG + chr7_4:43168878-43168897 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+TGG + chr7_4:43169120-43169139 None:intergenic 50.0%
CTGTGACGTCTCCAATGGAT+GGG - chr7_4:43169210-43169229 Msa1155260:intron 50.0%
CAGTGCAAGGAGACACTGTT+TGG - chr7_4:43169352-43169371 Msa1155260:intron 50.0%
!! AGGAGACACTGTTTGGGTTG+AGG - chr7_4:43169359-43169378 Msa1155260:intron 50.0%
!! GGAGACACTGTTTGGGTTGA+GGG - chr7_4:43169360-43169379 Msa1155260:intron 50.0%
TGCATGTCTGGATTTGTGGC+TGG - chr7_4:43169644-43169663 Msa1155260:CDS 50.0%
!! ACATGGGAAGTTGATGGGAC+TGG - chr7_4:43169778-43169797 Msa1155260:intron 50.0%
!! GATGGGACTGGCTTAACAAC+AGG - chr7_4:43169790-43169809 Msa1155260:intron 50.0%
GAGCACGTGGAAAGCTCATA+TGG + chr7_4:43170408-43170427 None:intergenic 50.0%
TTGAACCAGAACTGAGCACG+TGG + chr7_4:43170421-43170440 None:intergenic 50.0%
AAGCCAGCTTCTTGAAGTGC+AGG - chr7_4:43170942-43170961 Msa1155260:intron 50.0%
!!! CCACTGTTTTTGGTGCCTGA+TGG + chr7_4:43171161-43171180 None:intergenic 50.0%
CCATCAGGCACCAAAAACAG+TGG - chr7_4:43171158-43171177 Msa1155260:intron 50.0%
TTGCATGGCTATGGTCCTCA+AGG + chr7_4:43171288-43171307 None:intergenic 50.0%
CTCATCCTCTTGCATGGCTA+TGG + chr7_4:43171297-43171316 None:intergenic 50.0%
TGTCCAGTCAGCAATATGGG+AGG - chr7_4:43171771-43171790 Msa1155260:intron 50.0%
CTTCATGTCAAGTGAGTGCC+AGG - chr7_4:43171835-43171854 Msa1155260:intron 50.0%
! GGCCCTTATCATTGATAGCC+AGG - chr7_4:43172167-43172186 Msa1155260:intron 50.0%
GCTCTCCCAAACAGTGTCAC+AGG - chr7_4:43167038-43167057 Msa1155260:intron 55.0%
ATTGCGGCGCTATATCGCTG+TGG - chr7_4:43168059-43168078 Msa1155260:intron 55.0%
GTCTCCTGTGACGTCTCCAA+TGG - chr7_4:43169205-43169224 Msa1155260:intron 55.0%
CCATCCATTGGAGACGTCAC+AGG + chr7_4:43169212-43169231 None:intergenic 55.0%
CCTGTGACGTCTCCAATGGA+TGG - chr7_4:43169209-43169228 Msa1155260:intron 55.0%
GCTTTCCACGTGCTCAGTTC+TGG - chr7_4:43170413-43170432 Msa1155260:intron 55.0%
GAGGACCATAGCCATGCAAG+AGG - chr7_4:43171289-43171308 Msa1155260:intron 55.0%
TGGGAGGTTTGCGGTGATTC+TGG - chr7_4:43171787-43171806 Msa1155260:intron 55.0%
GCAAATGGGGTGGAGCTACG+AGG - chr7_4:43166599-43166618 Msa1155260:CDS 60.0%
! GACAGTGGAGCGTTTGCGCA+AGG - chr7_4:43167415-43167434 Msa1155260:intron 60.0%
! TGGGTTGAGGGTCTTGTCCC+TGG - chr7_4:43169372-43169391 Msa1155260:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 43166277 43172777 43166277 ID=Msa1155260;Name=Msa1155260
chr7_4 mRNA 43166277 43172777 43166277 ID=Msa1155260-mRNA-1;Parent=Msa1155260;Name=Msa1155260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=144|0.92|1|1|0.92|0.93|15|268|538
chr7_4 exon 43166277 43166701 43166277 ID=Msa1155260-mRNA-1:exon:10808;Parent=Msa1155260-mRNA-1
chr7_4 exon 43166852 43166947 43166852 ID=Msa1155260-mRNA-1:exon:10807;Parent=Msa1155260-mRNA-1
chr7_4 exon 43167209 43167324 43167209 ID=Msa1155260-mRNA-1:exon:10806;Parent=Msa1155260-mRNA-1
chr7_4 exon 43167708 43167950 43167708 ID=Msa1155260-mRNA-1:exon:10805;Parent=Msa1155260-mRNA-1
chr7_4 exon 43168091 43168162 43168091 ID=Msa1155260-mRNA-1:exon:10804;Parent=Msa1155260-mRNA-1
chr7_4 exon 43168275 43168331 43168275 ID=Msa1155260-mRNA-1:exon:10803;Parent=Msa1155260-mRNA-1
chr7_4 exon 43168972 43169036 43168972 ID=Msa1155260-mRNA-1:exon:10802;Parent=Msa1155260-mRNA-1
chr7_4 exon 43169213 43169293 43169213 ID=Msa1155260-mRNA-1:exon:10801;Parent=Msa1155260-mRNA-1
chr7_4 exon 43169640 43169753 43169640 ID=Msa1155260-mRNA-1:exon:10800;Parent=Msa1155260-mRNA-1
chr7_4 exon 43169944 43170056 43169944 ID=Msa1155260-mRNA-1:exon:10799;Parent=Msa1155260-mRNA-1
chr7_4 exon 43170594 43170676 43170594 ID=Msa1155260-mRNA-1:exon:10798;Parent=Msa1155260-mRNA-1
chr7_4 exon 43171401 43171506 43171401 ID=Msa1155260-mRNA-1:exon:10797;Parent=Msa1155260-mRNA-1
chr7_4 exon 43171601 43171775 43171601 ID=Msa1155260-mRNA-1:exon:10796;Parent=Msa1155260-mRNA-1
chr7_4 exon 43172365 43172455 43172365 ID=Msa1155260-mRNA-1:exon:10795;Parent=Msa1155260-mRNA-1
chr7_4 exon 43172586 43172777 43172586 ID=Msa1155260-mRNA-1:exon:10794;Parent=Msa1155260-mRNA-1
chr7_4 five_prime_UTR 43172634 43172777 43172634 ID=Msa1155260-mRNA-1:five_prime_utr;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43172586 43172633 43172586 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43172365 43172455 43172365 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43171601 43171775 43171601 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43171401 43171506 43171401 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43170594 43170676 43170594 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43169944 43170056 43169944 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43169640 43169753 43169640 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43169213 43169293 43169213 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43168972 43169036 43168972 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43168275 43168331 43168275 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43168091 43168162 43168091 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43167708 43167950 43167708 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43167209 43167324 43167209 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43166852 43166947 43166852 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 CDS 43166545 43166701 43166545 ID=Msa1155260-mRNA-1:cds;Parent=Msa1155260-mRNA-1
chr7_4 three_prime_UTR 43166277 43166544 43166277 ID=Msa1155260-mRNA-1:three_prime_utr;Parent=Msa1155260-mRNA-1
Gene Sequence

>Msa1155260

ATGGCGAACCCAGATGCAAAGCTCGAAACTTTCTTGCAGTGGCTACAGGCAAATGGGGTGGAGCTACGAGGCTGCAATATCAAGTACTGTGATTCCAGAAAAGGGTTTGGCATATTTTGTGATAAAGATGTTTCTGATGGGATTCTGTTGGTTGTTCCACTAGAATTATCAATTACTCCAATGAGGGTATTGCAAGATCCTTTTCTAGGACCAGAATGTAGAGCATTGTTTGAAGAAGGAGATGTAGATGACAGGCTCTTAATGATGTTGTTATTGACAGTGGAGCGTTTGCGCAAGGATTCTCTATGGAAACCGTACCTTGATATGCTTCCAACCACTTTTGGAAATACACTTTGGTTTAGTGACGAGGAACTTCAAGAGCTAAGAGGAACAACATTATATCGTGCAACTGAGTTACAGAAGAAAAGCCTGTTGAATTTGTATGAAACTAAAGTGAAGGATAGAGTGAAGAAACTTTTGACTCTTGACGGAGATTCTGAGATGGCAAATTCAGTATTTTGGAGCCGTGCTTTGAACACTCCATTGCCTCGTTCTTATGTATTTCCTGAGATGCAAGATGTTCATCAGAGTTGCACTCCAAAAGCTGATGAAAACGGAAGCCAAGTCACGAAATCTGACAATCTAACCAAGGAAACTACACATAGCACAGTGCAAGGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGCAACCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGGACTGGCTTAACAACAGGAGTTCCTGTCTCCATGTATCTTCTTTCCGCTGCTCAAAGTCCCTTGCAGATTGATCGAGAAATTTCCATTAGTTATGGCAACAAGGGAAATGAGGAACTTCTATATCTGTATGGTTTCGTCATTGATGGTAACACAGATGACTACCTCATGGTCCATTATCCTTCAGAAGCAATCAATACTATTTCTTTTTCAGAGTCTAAAAGCCAGCTTCTTGAAGTGCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAACTCTGCTGGATAATGGATTTTTTCCATCAGGCACCAAAAACAGTGGAGAAAATAACAAAAGCAACAAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGACTCCATCTTATGTAGATAAGCTTGTTTTTCCTGAGAAATTTATGGCTACCTTGAGGACCATAGCCATGCAAGAGGATGAGCTTTTCAAGGTTTCGTCAATGCTTGAAGAGCTTGTTGGACCTGAAGGGGAGAGACAATTATCAGATATAGATGTCCAGTCAGCAATATGGGAGGTTTGCGGTGATTCTGGAGCTTTACAAGTGCTAGTTGATCTTCTTCATGTCAAGTTAATGGACCTTGAAGAGCATTCTGGAACAGAGGAAAGTGACTTTGAATTGCTCAAGAAGGCCCTTATCATTGATAGCCAGGAAGATAGCAAACAAATGGCAAATGACTCAGAGGAAACAACGTTGATGACTAGAAACAAATGGTCTGCTATTGTATATAGACGAGGTCAAAAGCAGTTAACTCGATTATTCTTGAAAGAAGCAGAACACGCACTGCAATTATCGATGAGCGAAGAGATGAGTGTTCATTGA

Protein sequence

>Msa1155260

MANPDAKLETFLQWLQANGVELRGCNIKYCDSRKGFGIFCDKDVSDGILLVVPLELSITPMRVLQDPFLGPECRALFEEGDVDDRLLMMLLLTVERLRKDSLWKPYLDMLPTTFGNTLWFSDEELQELRGTTLYRATELQKKSLLNLYETKVKDRVKKLLTLDGDSEMANSVFWSRALNTPLPRSYVFPEMQDVHQSCTPKADENGSQVTKSDNLTKETTHSTVQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLTTGVPVSMYLLSAAQSPLQIDREISISYGNKGNEELLYLYGFVIDGNTDDYLMVHYPSEAINTISFSESKSQLLEVQKAEMRCLLPKTLLDNGFFPSGTKNSGENNKSNKVCNYSWSGQRKTPSYVDKLVFPEKFMATLRTIAMQEDELFKVSSMLEELVGPEGERQLSDIDVQSAIWEVCGDSGALQVLVDLLHVKLMDLEEHSGTEESDFELLKKALIIDSQEDSKQMANDSEETTLMTRNKWSAIVYRRGQKQLTRLFLKEAEHALQLSMSEEMSVH*