AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157220 MtrunA17_Chr5g0407011 52.344 128 52 4 1 120 1 127 2.16e-29 113
Msa1157220 MtrunA17_Chr8g0370431 52.756 127 52 3 1 120 1 126 1.74e-28 111
Msa1157220 MtrunA17_Chr3g0143991 57.143 77 31 1 27 101 40 116 1.30e-20 89.0
Msa1157220 MtrunA17_Chr7g0242251 49.495 99 48 1 28 124 47 145 8.23e-20 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157220 AT1G20693.2 52.632 114 45 2 23 127 29 142 8.04e-26 103
Msa1157220 AT3G51880.2 53.846 104 43 2 23 124 44 144 2.92e-25 103
Msa1157220 AT3G51880.5 53.846 104 43 2 23 124 44 144 4.22e-25 103
Msa1157220 AT3G51880.1 53.846 104 43 2 23 124 44 144 4.22e-25 103
Msa1157220 AT3G51880.3 53.846 104 43 2 23 124 44 144 4.22e-25 103
Msa1157220 AT1G20696.1 52.000 100 46 1 23 120 26 125 1.91e-23 97.1
Msa1157220 AT2G17560.3 44.961 129 67 3 4 128 6 134 3.35e-23 96.3
Msa1157220 AT3G51880.4 53.000 100 42 2 23 120 44 140 4.42e-23 96.7
Msa1157220 AT1G20696.2 53.261 92 41 1 23 112 26 117 5.35e-23 95.9
Msa1157220 AT1G20693.3 53.000 100 45 1 23 120 29 128 5.65e-23 95.9
Msa1157220 AT1G20693.1 53.000 100 45 1 23 120 29 128 5.81e-23 95.9
Msa1157220 AT2G17560.2 45.113 133 66 4 4 129 6 138 9.60e-23 95.1
Msa1157220 AT2G17560.1 45.113 133 66 4 4 129 6 138 9.60e-23 95.1
Msa1157220 AT1G20696.5 55.422 83 35 1 23 103 26 108 5.64e-22 92.8
Msa1157220 AT1G20696.3 52.174 92 40 2 40 129 1 90 1.69e-20 87.0
Msa1157220 AT4G35570.1 39.216 102 60 1 3 102 5 106 1.23e-18 82.8
Msa1157220 AT4G35570.2 39.216 102 60 1 3 102 5 106 1.23e-18 82.8
Msa1157220 AT1G20696.4 50.602 83 39 1 40 120 1 83 3.89e-18 80.5

Find 162 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTGGACCCCTTGGATTTC+AGG 0.152107 7_4:-46105784 None:intergenic
CTCGTTCTCGCGGTCCTTCT+TGG 0.181588 7_4:+46104522 Msa1157220:CDS
TATTGATGTCTTTATCAATT+TGG 0.184499 7_4:+46106392 Msa1157220:CDS
CTTCTTCACCAAGCCGTCTT+TGG 0.224000 7_4:-46106223 None:intergenic
AAGCTAAGAAGGATCCTTTC+AGG 0.245570 7_4:+46102518 Msa1157220:CDS
TGCTGAAAAGGGACTCAAAA+TGG 0.246707 7_4:+46104427 Msa1157220:CDS
GGTCGGTCCTCCGCGGCTGC+TGG 0.249849 7_4:+46105943 Msa1157220:CDS
AGATTTCAACCAATCGTTAT+TGG 0.249984 7_4:-46104777 None:intergenic
TTAGCTTTCTTAAACTCCTT+TGG 0.275178 7_4:-46102502 None:intergenic
GCTCAGGTTGTGTGCATCTT+TGG 0.279590 7_4:+46105172 Msa1157220:CDS
AGAGGCAGTTGTTGCTTTAG+AGG 0.285099 7_4:-46106093 None:intergenic
AGTCTTGGCTATACTTAAAA+AGG 0.299580 7_4:+46105054 Msa1157220:CDS
ATTTGGCCGGCTGTTTGGTC+AGG 0.310632 7_4:+46104888 Msa1157220:CDS
TTTGGATTTGGCCGGCTGTT+TGG 0.319266 7_4:+46104883 Msa1157220:CDS
TCCTGCATCAAGGACTAATA+AGG 0.345923 7_4:+46105588 Msa1157220:CDS
AGGGGTCCAGTCGAAGCCTT+TGG 0.352623 7_4:+46105795 Msa1157220:CDS
TAGTGCCTGTGCTCGACAAA+TGG 0.353781 7_4:+46104664 Msa1157220:CDS
TTCAATTAGGTTGGTAAAGC+TGG 0.354056 7_4:+46103116 Msa1157220:intron
ATGATGAACTCACCGGTTAT+TGG 0.361635 7_4:-46102373 None:intergenic
CCGGCCAAATCCAAATGGTT+GGG 0.369508 7_4:-46104875 None:intergenic
CAACATTAACTTCCAACCTT+TGG 0.377688 7_4:+46104496 Msa1157220:CDS
ACATGACCAGAATTGAATTC+TGG 0.383050 7_4:-46104626 None:intergenic
AGTTTCCCAGAATTCAATTC+TGG 0.396065 7_4:+46104620 Msa1157220:intron
GTCGGTCCTCCGCGGCTGCT+GGG 0.398746 7_4:+46105944 Msa1157220:CDS
TTCACCGCTTGCTTGTAAAC+AGG 0.417534 7_4:-46106198 None:intergenic
GAGACTAGTGTCGAAGCCTT+TGG 0.417849 7_4:+46106008 Msa1157220:CDS
CCCAACCATTTGGATTTGGC+CGG 0.418972 7_4:+46104875 Msa1157220:CDS
ATCAGACTGCGAAAACTCTA+AGG 0.419587 7_4:+46106460 Msa1157220:CDS
GGTCAGAACCTTACTATTGT+AGG 0.422560 7_4:-46103321 None:intergenic
AAAAGTACGTCAAGGGGAAC+TGG 0.426418 7_4:-46106559 None:intergenic
TCTCTTCGACTATTGACCTT+TGG 0.426555 7_4:+46104797 Msa1157220:CDS
ACGTCAAGGGGAACTGGATT+GGG 0.432504 7_4:-46106553 None:intergenic
GCATCTTTGGTTTGACCGAC+TGG 0.433200 7_4:+46105185 Msa1157220:CDS
TAAAACTGTTAATGAAGTCT+TGG 0.434543 7_4:+46105039 Msa1157220:CDS
ACGCAAAACCCTCCAATAAC+CGG 0.444454 7_4:+46102361 Msa1157220:CDS
CATGACCAGAATTGAATTCT+GGG 0.448042 7_4:-46104625 None:intergenic
TTATGCTGAAGTGTGTGCTT+GGG 0.449769 7_4:+46104720 Msa1157220:CDS
TACGTCAAGGGGAACTGGAT+TGG 0.450076 7_4:-46106554 None:intergenic
GCGGAAAATGTAGCGATAAA+CGG 0.451512 7_4:-46102318 None:intergenic
GGGGTCCAGTCGAAGCCTTT+GGG 0.451912 7_4:+46105796 Msa1157220:CDS
GGAGTTTAAGAAAGCTAAGA+AGG 0.462436 7_4:+46102507 Msa1157220:CDS
AGTGCCTGTGCTCGACAAAT+GGG 0.464498 7_4:+46104665 Msa1157220:CDS
GAGATAGAGAGTGTGTGTGA+GGG 0.465509 7_4:-46102260 None:intergenic
AGCAAGAGACAATTAAGGTC+AGG 0.471525 7_4:+46106295 Msa1157220:CDS
ACCTTATTAGTCCTTGATGC+AGG 0.473479 7_4:-46105589 None:intergenic
AGGTCAATTGCTTCTTGAGT+TGG 0.479210 7_4:-46106335 None:intergenic
TTTGGCCGGCTGTTTGGTCA+GGG 0.479299 7_4:+46104889 Msa1157220:CDS
TGATCTGCTCAAGAGTACTT+TGG 0.480608 7_4:-46106122 None:intergenic
TTTGGTCGACCGAACGGTGC+TGG 0.484657 7_4:+46105210 Msa1157220:CDS
AAAACAGCAAGAGACAATTA+AGG 0.486983 7_4:+46106290 Msa1157220:CDS
TTTCTTAAACTCCTTTGGAC+TGG 0.488433 7_4:-46102497 None:intergenic
AGCTAATTCCGCCTCAGCTA+AGG 0.489557 7_4:-46106355 None:intergenic
GCCGGCCAAATCCAAATGGT+TGG 0.490114 7_4:-46104876 None:intergenic
CAATACGCTCTTGCTGAACC+TGG 0.490211 7_4:-46105840 None:intergenic
AAAGAAAGCAAGTCATCTGC+GGG 0.491105 7_4:-46105883 None:intergenic
GACTAATAAGGTAACACAAA+TGG 0.491795 7_4:+46105600 Msa1157220:CDS
TTATAACAAAACCAGTGCTC+AGG 0.492027 7_4:+46105156 Msa1157220:CDS
AGAGATAGAGAGTGTGTGTG+AGG 0.492708 7_4:-46102261 None:intergenic
TGATTTCAGAGTGATGTTCA+TGG 0.493514 7_4:+46102742 Msa1157220:CDS
TATCCGCAATATGCTCAACT+TGG 0.496870 7_4:-46104955 None:intergenic
AAGCATTCTTTGAGACATGA+AGG 0.500991 7_4:-46106158 None:intergenic
CAGGTTCAGCAAGAGCGTAT+TGG 0.502666 7_4:+46105841 Msa1157220:CDS
AAGGCTTCGACTGGACCCCT+TGG 0.505948 7_4:-46105792 None:intergenic
AATCAGATGAGGAGGCTAGT+TGG 0.506414 7_4:+46106060 Msa1157220:CDS
CGTTGTTGCCTGAAATCCAA+GGG 0.509705 7_4:+46105776 Msa1157220:CDS
ATTATGCTGAAGTGTGTGCT+TGG 0.509982 7_4:+46104719 Msa1157220:CDS
CGGCCAAATCCAAATGGTTG+GGG 0.513077 7_4:-46104874 None:intergenic
ATTTGTCGAGCACAGGCACT+AGG 0.513385 7_4:-46104662 None:intergenic
AGATAGAGAGTGTGTGTGAG+GGG 0.514415 7_4:-46102259 None:intergenic
GAAGTGTGTGCTTGGGGTTG+AGG 0.524691 7_4:+46104727 Msa1157220:CDS
CTTGCTGAACCTGGTGAAGT+AGG 0.528144 7_4:-46105831 None:intergenic
AACAGCCGGCCAAATCCAAA+TGG 0.529017 7_4:-46104880 None:intergenic
TCGTTGTTGCCTGAAATCCA+AGG 0.529974 7_4:+46105775 Msa1157220:CDS
ATGAACAGAAAGAAAGGAGA+TGG 0.533421 7_4:-46102553 None:intergenic
ACAGCGACGGATGTATTGAA+TGG 0.535641 7_4:-46102773 None:intergenic
ATGTGTCTTGTCCTGCATCA+AGG 0.536270 7_4:+46105578 Msa1157220:CDS
CAAAGGTTGGAAGTTAATGT+TGG 0.537627 7_4:-46104495 None:intergenic
ATTGGGTAATCACCAACAAC+AGG 0.537894 7_4:-46106536 None:intergenic
ATGAACTCACCGGTTATTGG+AGG 0.539524 7_4:-46102370 None:intergenic
AAGAAATTACCAGCACCGTT+CGG 0.539801 7_4:-46105219 None:intergenic
AGGTTATCTGTTGGACCCAA+AGG 0.540225 7_4:-46105811 None:intergenic
ACTTACATGAACAGAAAGAA+AGG 0.543348 7_4:-46102559 None:intergenic
TTGTCGACAGAGGAAGTTGA+AGG 0.544379 7_4:-46105748 None:intergenic
ACAAATGGTTGGTACTTCCA+AGG 0.544568 7_4:+46105615 Msa1157220:CDS
TTGGACCCAAAGGCTTCGAC+TGG 0.547806 7_4:-46105801 None:intergenic
GCTGCATGCCTACAATAGTA+AGG 0.554165 7_4:+46103313 Msa1157220:CDS
AAAGACATCAATACCAGTGT+TGG 0.556745 7_4:-46106382 None:intergenic
CAAGGCTCCTTACATTGCTA+TGG 0.559156 7_4:+46103265 Msa1157220:CDS
TGTGCTTGGGGTTGAGGCGA+AGG 0.560398 7_4:+46104733 Msa1157220:CDS
ATCCGCAATATGCTCAACTT+GGG 0.560447 7_4:-46104954 None:intergenic
GATAGAAGGTAAACGCAGGA+TGG 0.561092 7_4:+46104393 Msa1157220:intron
CCAGAAAACGCAGAAGCTGC+AGG 0.561843 7_4:-46105922 None:intergenic
CTTTAGGATGAGGATGATGA+GGG 0.566849 7_4:+46103597 Msa1157220:intron
CCGCTTGCTTGTAAACAGGA+AGG 0.567537 7_4:-46106194 None:intergenic
TAGTCACAAAGGATCGTTGT+GGG 0.570845 7_4:-46105015 None:intergenic
GATGCACACAACCTGAGCAC+TGG 0.571097 7_4:-46105167 None:intergenic
AGAACTTGAGGACCTGTTGT+TGG 0.572376 7_4:+46106524 Msa1157220:CDS
GGTGAATTCCAAAGACGGCT+TGG 0.573461 7_4:+46106215 Msa1157220:CDS
TGAACCCATTTGTCGAGCAC+AGG 0.574504 7_4:-46104669 None:intergenic
AGCACACATGAGGCTTGCAT+AGG 0.575293 7_4:+46104821 Msa1157220:CDS
GAGGAAGTTGAAGGGGAAGG+AGG 0.575735 7_4:-46105739 None:intergenic
ATCAACTAAGAAAGAACTTG+AGG 0.576732 7_4:+46106512 Msa1157220:CDS
ACTTTAGGATGAGGATGATG+AGG 0.578881 7_4:+46103596 Msa1157220:intron
ACAGAGGAAGTTGAAGGGGA+AGG 0.579857 7_4:-46105742 None:intergenic
CGCTTGCTTGTAAACAGGAA+GGG 0.581273 7_4:-46106193 None:intergenic
ACAAGACACATTTCTGTCAC+CGG 0.582444 7_4:-46105566 None:intergenic
AGAGTACTTTGGCTTGAGAG+AGG 0.584236 7_4:-46106111 None:intergenic
GACCTTTGGCAGCACACATG+AGG 0.585326 7_4:+46104811 Msa1157220:CDS
GATTGATTCTAGTGTAGCCA+TGG 0.588630 7_4:+46105966 Msa1157220:CDS
GCACACATGAGGCTTGCATA+GGG 0.589269 7_4:+46104822 Msa1157220:CDS
CCTTCCTGTTTACAAGCAAG+CGG 0.591763 7_4:+46106194 Msa1157220:CDS
GTCTGGAGTCAACGATGAGG+AGG 0.593966 7_4:+46103480 Msa1157220:CDS
TCATCGACACCAATAACGAT+TGG 0.595226 7_4:+46104768 Msa1157220:CDS
TGAACTCACCGGTTATTGGA+GGG 0.595630 7_4:-46102369 None:intergenic
CCGCGAGAACGAGCGACCAA+AGG 0.596733 7_4:-46104512 None:intergenic
CAAAGAAAGCAAGTCATCTG+CGG 0.596889 7_4:-46105884 None:intergenic
CAAGTTAAAAGTACGTCAAG+GGG 0.597475 7_4:-46106565 None:intergenic
TGTCGACAGAGGAAGTTGAA+GGG 0.597715 7_4:-46105747 None:intergenic
CACTTCAGCATAATTTCAGA+AGG 0.598778 7_4:-46104710 None:intergenic
GAGAACGAGCGACCAAAGGT+TGG 0.599487 7_4:-46104508 None:intergenic
CTGATTCACCTCGTCACGAA+GGG 0.600227 7_4:-46106442 None:intergenic
TATGGCAGAAAAGAAGAAAG+AGG 0.601680 7_4:+46103283 Msa1157220:CDS
GCAATTGACCTTAGCTGAGG+CGG 0.601942 7_4:+46106347 Msa1157220:CDS
GGATGGCTCTGAAACCTGAA+AGG 0.602884 7_4:-46102532 None:intergenic
GCAAGAGACAATTAAGGTCA+GGG 0.602913 7_4:+46106296 Msa1157220:CDS
CATCAATGCCCTTCGTGACG+AGG 0.603612 7_4:+46106434 Msa1157220:CDS
AACAGATAACCTACTTCACC+AGG 0.605001 7_4:+46105822 Msa1157220:CDS
TTGCATTCAATCAGATGAGG+AGG 0.607594 7_4:+46106052 Msa1157220:CDS
TCAGCAGAAGCAACGTCCAA+AGG 0.607772 7_4:-46106024 None:intergenic
TTTGTCGAGCACAGGCACTA+GGG 0.610480 7_4:-46104661 None:intergenic
ATCAATCCCAGCAGCCGCGG+AGG 0.613151 7_4:-46105950 None:intergenic
TGGTGAAGTAGGTTATCTGT+TGG 0.614394 7_4:-46105820 None:intergenic
TAGGTTTGAAACCAGTCCAA+AGG 0.614410 7_4:+46102486 Msa1157220:intron
CCTCATCTGATTGAATGCAA+AGG 0.614532 7_4:-46106049 None:intergenic
AATAAGGTAACACAAATGGT+TGG 0.615126 7_4:+46105604 Msa1157220:CDS
ACAGAAAGAAAGGAGATGGA+TGG 0.616223 7_4:-46102549 None:intergenic
ATGGGTTTGGTAAACCAAGA+AGG 0.616594 7_4:-46104536 None:intergenic
TATGCTGAAGTGTGTGCTTG+GGG 0.617274 7_4:+46104721 Msa1157220:CDS
AGCATAATTTCAGAAGGACA+AGG 0.619720 7_4:-46104704 None:intergenic
GTCGACAGAGGAAGTTGAAG+GGG 0.622792 7_4:-46105746 None:intergenic
AGAAGCTGCAGGACTTGAGT+CGG 0.623712 7_4:-46105911 None:intergenic
GACAAAACTCACAACAGCGA+CGG 0.624222 7_4:-46102786 None:intergenic
AGCATTCTTTGAGACATGAA+GGG 0.625562 7_4:-46106157 None:intergenic
GAATTAGCTGAAGCCAACAC+TGG 0.627314 7_4:+46106369 Msa1157220:CDS
AATTTCAGAAGGACAAGGAG+TGG 0.630911 7_4:-46104699 None:intergenic
TCTGATTCACCTCGTCACGA+AGG 0.634897 7_4:-46106443 None:intergenic
AGCCTCATGTGTGCTGCCAA+AGG 0.637642 7_4:-46104813 None:intergenic
CCTTTGCATTCAATCAGATG+AGG 0.638173 7_4:+46106049 Msa1157220:CDS
AACCCAAGTTGAGCATATTG+CGG 0.639976 7_4:+46104952 Msa1157220:CDS
CAAGCGGTGAATTCCAAAGA+CGG 0.642422 7_4:+46106210 Msa1157220:CDS
TAGCTGTTGAAAGAATTGCT+TGG 0.646051 7_4:+46103433 Msa1157220:intron
AATTAGGTTGGTAAAGCTGG+CGG 0.647731 7_4:+46103119 Msa1157220:intron
AGAATCAATCCCAGCAGCCG+CGG 0.662347 7_4:-46105953 None:intergenic
AAATGATAGAAGGTAAACGC+AGG 0.667090 7_4:+46104389 Msa1157220:intron
GAAGCAATTGACCTTAGCTG+AGG 0.673616 7_4:+46106344 Msa1157220:CDS
GTCGAGCACAGGCACTAGGG+AGG 0.676631 7_4:-46104658 None:intergenic
AGAGTCTGGAGTCAACGATG+AGG 0.682329 7_4:+46103477 Msa1157220:CDS
CAACGAAGACTTGTCGACAG+AGG 0.689461 7_4:-46105758 None:intergenic
ATAGTCACAAAGGATCGTTG+TGG 0.692151 7_4:-46105016 None:intergenic
GGCCAAATCCAAATGGTTGG+GGG 0.696204 7_4:-46104873 None:intergenic
GTTGTTGCCTGAAATCCAAG+GGG 0.714579 7_4:+46105777 Msa1157220:CDS
AAGAAAGCAAGTCATCTGCG+GGG 0.759552 7_4:-46105882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAGTAAACATTATTAA+TGG - chr7_4:46103715-46103734 None:intergenic 10.0%
!!! AAATTTTTTAAAATGATAGA+AGG + chr7_4:46104379-46104398 Msa1157220:intron 10.0%
!!! TTGATTTTAATATTGTTTTG+TGG + chr7_4:46103224-46103243 Msa1157220:intron 15.0%
!!! TTCTTAAAATTTGGAATTAA+AGG - chr7_4:46105130-46105149 None:intergenic 15.0%
!! ATAAAACATTATAGTCATAA+TGG - chr7_4:46105354-46105373 None:intergenic 15.0%
!! TAACAAATGAAAAAGAGAAA+AGG - chr7_4:46102427-46102446 None:intergenic 20.0%
!!! TTTTGTTTTGTTATGTTTAC+AGG + chr7_4:46102717-46102736 Msa1157220:intron 20.0%
!!! TGATTGCTTTATTTTTATCT+TGG + chr7_4:46103367-46103386 Msa1157220:intron 20.0%
!!! TTGATTTGTTTATGTACTTT+AGG + chr7_4:46103581-46103600 Msa1157220:intron 20.0%
!! GGTGAAATAATATGTTATTA+TGG + chr7_4:46104033-46104052 Msa1157220:intron 20.0%
!! ATATGTTATTATGGTATGTT+TGG + chr7_4:46104042-46104061 Msa1157220:intron 20.0%
!!! GTATTTTGATAAATTTGTCA+TGG + chr7_4:46104079-46104098 Msa1157220:intron 20.0%
!! TATATCTTGAACAAGTTAAT+TGG + chr7_4:46104194-46104213 Msa1157220:intron 20.0%
!! GATATAAACAGTTATAATTG+GGG - chr7_4:46105668-46105687 None:intergenic 20.0%
!! GGATATAAACAGTTATAATT+GGG - chr7_4:46105669-46105688 None:intergenic 20.0%
!! TATTGATGTCTTTATCAATT+TGG + chr7_4:46106392-46106411 Msa1157220:CDS 20.0%
! AAGTAAGAATGCGAAAAAAA+TGG - chr7_4:46102401-46102420 None:intergenic 25.0%
!! TTGTTTTCATTTTGTTCGTT+AGG + chr7_4:46102467-46102486 Msa1157220:intron 25.0%
! AAACATTTAATAACAACAGC+AGG - chr7_4:46102623-46102642 None:intergenic 25.0%
!!! ATTTGCTGTGAATTTCAATT+AGG + chr7_4:46103103-46103122 Msa1157220:intron 25.0%
! ATATACTTAACATGTATGAC+TGG + chr7_4:46103948-46103967 Msa1157220:intron 25.0%
! TATACTTAACATGTATGACT+GGG + chr7_4:46103949-46103968 Msa1157220:intron 25.0%
! TATGGTATGTTTGGATTTAA+AGG + chr7_4:46104051-46104070 Msa1157220:intron 25.0%
! AATGTAAAAACTGCTGAAAA+GGG + chr7_4:46104416-46104435 Msa1157220:CDS 25.0%
!! TCATTTTCTTTGTAACGTAT+TGG + chr7_4:46104595-46104614 Msa1157220:intron 25.0%
! AAAAACGTTATAGGCTTAAA+TGG + chr7_4:46104990-46105009 Msa1157220:CDS 25.0%
!!! AACAGTTTTAATAGTCACAA+AGG - chr7_4:46105029-46105048 None:intergenic 25.0%
! TAAAACTGTTAATGAAGTCT+TGG + chr7_4:46105039-46105058 Msa1157220:CDS 25.0%
! TAAGGAAGCTTCTTAAAATT+TGG - chr7_4:46105139-46105158 None:intergenic 25.0%
!!! AATCGACTTTTAAGTTTACA+TGG + chr7_4:46105516-46105535 Msa1157220:intron 25.0%
! GGGATATAAACAGTTATAAT+TGG - chr7_4:46105670-46105689 None:intergenic 25.0%
!! TTTTCTTTTTGTTCTTTGAG+AGG - chr7_4:46106255-46106274 None:intergenic 25.0%
! TTAGCTTTCTTAAACTCCTT+TGG - chr7_4:46102505-46102524 None:intergenic 30.0%
ACTTACATGAACAGAAAGAA+AGG - chr7_4:46102562-46102581 None:intergenic 30.0%
AGGTAAAAACAGAAGTAGTT+TGG - chr7_4:46102603-46102622 None:intergenic 30.0%
AGTTTCCACATCAATTAATG+AGG + chr7_4:46102953-46102972 Msa1157220:intron 30.0%
TCATACCTCATTAATTGATG+TGG - chr7_4:46102961-46102980 None:intergenic 30.0%
ATCATTCGATAATGTACTGA+CGG - chr7_4:46103015-46103034 None:intergenic 30.0%
TTGTGGTTTATGTGTATTTC+AGG + chr7_4:46103241-46103260 Msa1157220:intron 30.0%
TTTATGTGTATTTCAGGACA+AGG + chr7_4:46103247-46103266 Msa1157220:intron 30.0%
!!! GCTTTATTTTTATCTTGGAC+TGG + chr7_4:46103372-46103391 Msa1157220:intron 30.0%
CTCTTATGTGTTTCTTTGTT+AGG + chr7_4:46103526-46103545 Msa1157220:intron 30.0%
TTCTTTGTTAGGTGTTCATA+TGG + chr7_4:46103537-46103556 Msa1157220:intron 30.0%
!! TGTTTATGTACTTTAGGATG+AGG + chr7_4:46103587-46103606 Msa1157220:intron 30.0%
GTTGAATGATACATAGCAAA+TGG - chr7_4:46103671-46103690 None:intergenic 30.0%
ACATTATTAATGGCCAACAA+GGG - chr7_4:46103705-46103724 None:intergenic 30.0%
AACATTATTAATGGCCAACA+AGG - chr7_4:46103706-46103725 None:intergenic 30.0%
TGGCAAATATTTGCAAAGAT+AGG + chr7_4:46103842-46103861 Msa1157220:intron 30.0%
GGCAAATATTTGCAAAGATA+GGG + chr7_4:46103843-46103862 Msa1157220:intron 30.0%
TTCACCTCTTCATTAATCTT+TGG - chr7_4:46104019-46104038 None:intergenic 30.0%
ATAAATTTGTCATGGTAGCA+AGG + chr7_4:46104087-46104106 Msa1157220:intron 30.0%
TAAATTTGTCATGGTAGCAA+GGG + chr7_4:46104088-46104107 Msa1157220:intron 30.0%
! CGATTCTTTTTACAGTGATT+TGG + chr7_4:46104114-46104133 Msa1157220:intron 30.0%
! TTTAAACTTTCACTGGTTGT+TGG - chr7_4:46104161-46104180 None:intergenic 30.0%
ACCAGTGAAAGTTTAAATCA+AGG + chr7_4:46104164-46104183 Msa1157220:intron 30.0%
ACTGTAAAAAACATGAAAGC+AGG + chr7_4:46104302-46104321 Msa1157220:intron 30.0%
GAATGTAAAAACTGCTGAAA+AGG + chr7_4:46104415-46104434 Msa1157220:CDS 30.0%
AGATTTCAACCAATCGTTAT+TGG - chr7_4:46104780-46104799 None:intergenic 30.0%
! AAGCCTATAACGTTTTTGAA+AGG - chr7_4:46104987-46105006 None:intergenic 30.0%
AGTCTTGGCTATACTTAAAA+AGG + chr7_4:46105054-46105073 Msa1157220:CDS 30.0%
ACCTGTCTGATAAATTTCAT+AGG + chr7_4:46105273-46105292 Msa1157220:intron 30.0%
CCTGTCTGATAAATTTCATA+GGG + chr7_4:46105274-46105293 Msa1157220:intron 30.0%
GACTAATAAGGTAACACAAA+TGG + chr7_4:46105600-46105619 Msa1157220:CDS 30.0%
AATAAGGTAACACAAATGGT+TGG + chr7_4:46105604-46105623 Msa1157220:CDS 30.0%
TAACTGTTTATATCCCGTAA+TGG + chr7_4:46105674-46105693 Msa1157220:intron 30.0%
! CAGTTCTTTAAAAAGTTCCA+TGG - chr7_4:46105986-46106005 None:intergenic 30.0%
AAAACAGCAAGAGACAATTA+AGG + chr7_4:46106290-46106309 Msa1157220:CDS 30.0%
ATCAACTAAGAAAGAACTTG+AGG + chr7_4:46106512-46106531 Msa1157220:CDS 30.0%
AATGGAAATGATGAACTCAC+CGG - chr7_4:46102383-46102402 None:intergenic 35.0%
TTTCTTAAACTCCTTTGGAC+TGG - chr7_4:46102500-46102519 None:intergenic 35.0%
GGAGTTTAAGAAAGCTAAGA+AGG + chr7_4:46102507-46102526 Msa1157220:CDS 35.0%
ATGAACAGAAAGAAAGGAGA+TGG - chr7_4:46102556-46102575 None:intergenic 35.0%
! GTTTGGAGAATGTTGATGAA+TGG - chr7_4:46102586-46102605 None:intergenic 35.0%
TGATTTCAGAGTGATGTTCA+TGG + chr7_4:46102742-46102761 Msa1157220:CDS 35.0%
TGATGTGGAAACTCATCATT+AGG - chr7_4:46102946-46102965 None:intergenic 35.0%
GCTGTGAATTTCAATTAGGT+TGG + chr7_4:46103107-46103126 Msa1157220:intron 35.0%
!! TTCAATTAGGTTGGTAAAGC+TGG + chr7_4:46103116-46103135 Msa1157220:intron 35.0%
! TTTTCTGCCATAGCAATGTA+AGG - chr7_4:46103275-46103294 None:intergenic 35.0%
TATGGCAGAAAAGAAGAAAG+AGG + chr7_4:46103283-46103302 Msa1157220:CDS 35.0%
AATTCACTACTGTAGGCAAT+CGG - chr7_4:46103345-46103364 None:intergenic 35.0%
AATCACCAATTCACTACTGT+AGG - chr7_4:46103352-46103371 None:intergenic 35.0%
TAGCTGTTGAAAGAATTGCT+TGG + chr7_4:46103433-46103452 Msa1157220:intron 35.0%
!! AATTTTGACAAGTCAGAGTC+TGG + chr7_4:46103463-46103482 Msa1157220:CDS 35.0%
GGGAATAAATAATGTGAGAG+AGG + chr7_4:46103617-46103636 Msa1157220:intron 35.0%
GAATGATACATAGCAAATGG+TGG - chr7_4:46103668-46103687 None:intergenic 35.0%
TTTGCATCAGAGAGAATTGA+AGG - chr7_4:46103792-46103811 None:intergenic 35.0%
GCAAACAAGTGTAAAAGAGA+TGG + chr7_4:46103807-46103826 Msa1157220:intron 35.0%
AGTGTAAAAGAGATGGTTGA+AGG + chr7_4:46103814-46103833 Msa1157220:intron 35.0%
TGTCAAATGCTTGTTTGTGT+TGG + chr7_4:46103878-46103897 Msa1157220:intron 35.0%
CAAGCCAAAGATTAATGAAG+AGG + chr7_4:46104012-46104031 Msa1157220:intron 35.0%
GCCTTGATTTAAACTTTCAC+TGG - chr7_4:46104168-46104187 None:intergenic 35.0%
GTGTGTCAATGGAAATGTTT+AGG + chr7_4:46104237-46104256 Msa1157220:intron 35.0%
! CATGAAAGCAGGAAAGTATA+TGG + chr7_4:46104313-46104332 Msa1157220:intron 35.0%
AAATGATAGAAGGTAAACGC+AGG + chr7_4:46104389-46104408 Msa1157220:intron 35.0%
CAAAGGTTGGAAGTTAATGT+TGG - chr7_4:46104498-46104517 None:intergenic 35.0%
CAACATTAACTTCCAACCTT+TGG + chr7_4:46104496-46104515 Msa1157220:CDS 35.0%
! AGAATTGAATTCTGGGAAAC+TGG - chr7_4:46104621-46104640 None:intergenic 35.0%
AGTTTCCCAGAATTCAATTC+TGG + chr7_4:46104620-46104639 Msa1157220:intron 35.0%
CATGACCAGAATTGAATTCT+GGG - chr7_4:46104628-46104647 None:intergenic 35.0%
ACATGACCAGAATTGAATTC+TGG - chr7_4:46104629-46104648 None:intergenic 35.0%
AGCATAATTTCAGAAGGACA+AGG - chr7_4:46104707-46104726 None:intergenic 35.0%
CACTTCAGCATAATTTCAGA+AGG - chr7_4:46104713-46104732 None:intergenic 35.0%
GAGCCTTTCAAAAACGTTAT+AGG + chr7_4:46104981-46105000 Msa1157220:CDS 35.0%
!!! TGAGCACTGGTTTTGTTATA+AGG - chr7_4:46105157-46105176 None:intergenic 35.0%
TTATAACAAAACCAGTGCTC+AGG + chr7_4:46105156-46105175 Msa1157220:CDS 35.0%
GTAATTTCTTCCCCTTGAAA+GGG + chr7_4:46105232-46105251 Msa1157220:intron 35.0%
AGAATGATAAGCCCTTTCAA+GGG - chr7_4:46105246-46105265 None:intergenic 35.0%
TAGAATGATAAGCCCTTTCA+AGG - chr7_4:46105247-46105266 None:intergenic 35.0%
CCCTATGAAATTTATCAGAC+AGG - chr7_4:46105277-46105296 None:intergenic 35.0%
GTCTGATAAATTTCATAGGG+AGG + chr7_4:46105277-46105296 Msa1157220:intron 35.0%
!!! TTTGTTTTTAGCTGTGCCTT+TGG + chr7_4:46105433-46105452 Msa1157220:intron 35.0%
!!! TTGTTTTTAGCTGTGCCTTT+GGG + chr7_4:46105434-46105453 Msa1157220:intron 35.0%
!! TCTTGTTGACTTAATAGGGA+GGG - chr7_4:46105465-46105484 None:intergenic 35.0%
!! TTCTTGTTGACTTAATAGGG+AGG - chr7_4:46105466-46105485 None:intergenic 35.0%
!! CGCTTCTTGTTGACTTAATA+GGG - chr7_4:46105469-46105488 None:intergenic 35.0%
!! TCGCTTCTTGTTGACTTAAT+AGG - chr7_4:46105470-46105489 None:intergenic 35.0%
!!! CACCTTTTTTATCTTCAGTC+CGG + chr7_4:46105547-46105566 Msa1157220:intron 35.0%
AGTTATAATTGGGGCTAGAA+TGG - chr7_4:46105659-46105678 None:intergenic 35.0%
!! AGCATTCTTTGAGACATGAA+GGG - chr7_4:46106160-46106179 None:intergenic 35.0%
!! AAGCATTCTTTGAGACATGA+AGG - chr7_4:46106161-46106180 None:intergenic 35.0%
!! CTTTTTGTTCTTTGAGAGGA+AGG - chr7_4:46106251-46106270 None:intergenic 35.0%
AAAGACATCAATACCAGTGT+TGG - chr7_4:46106385-46106404 None:intergenic 35.0%
GCGGAAAATGTAGCGATAAA+CGG - chr7_4:46102321-46102340 None:intergenic 40.0%
! ATGATGAACTCACCGGTTAT+TGG - chr7_4:46102376-46102395 None:intergenic 40.0%
! TAGGTTTGAAACCAGTCCAA+AGG + chr7_4:46102486-46102505 Msa1157220:intron 40.0%
AAGCTAAGAAGGATCCTTTC+AGG + chr7_4:46102518-46102537 Msa1157220:CDS 40.0%
ACAGAAAGAAAGGAGATGGA+TGG - chr7_4:46102552-46102571 None:intergenic 40.0%
CCATTTAGTGGAATAAGGCT+TGG - chr7_4:46102877-46102896 None:intergenic 40.0%
!! CCAAGCCTTATTCCACTAAA+TGG + chr7_4:46102874-46102893 Msa1157220:intron 40.0%
TATAAGTCGACGCCATTTAG+TGG - chr7_4:46102889-46102908 None:intergenic 40.0%
!! AATTAGGTTGGTAAAGCTGG+CGG + chr7_4:46103119-46103138 Msa1157220:intron 40.0%
GGTCAGAACCTTACTATTGT+AGG - chr7_4:46103324-46103343 None:intergenic 40.0%
GATTGCCTACAGTAGTGAAT+TGG + chr7_4:46103344-46103363 Msa1157220:intron 40.0%
AGGTGTTCATATGGTTGTGT+TGG + chr7_4:46103546-46103565 Msa1157220:intron 40.0%
!! ACTTTAGGATGAGGATGATG+AGG + chr7_4:46103596-46103615 Msa1157220:intron 40.0%
!! CTTTAGGATGAGGATGATGA+GGG + chr7_4:46103597-46103616 Msa1157220:intron 40.0%
! TGAGAGAGGAGTGAAAGTAT+GGG + chr7_4:46103631-46103650 Msa1157220:intron 40.0%
AGAGATGGTTGAAGGATACA+TGG + chr7_4:46103822-46103841 Msa1157220:intron 40.0%
CTTAACATGTATGACTGGGT+TGG + chr7_4:46103953-46103972 Msa1157220:intron 40.0%
GGACATTGTGCGATAAGAAA+TGG + chr7_4:46103974-46103993 Msa1157220:intron 40.0%
TAAGAAATGGTGCGTTGCAT+TGG + chr7_4:46103987-46104006 Msa1157220:intron 40.0%
!! CAGTGATTTGGTTAACTGTC+AGG + chr7_4:46104126-46104145 Msa1157220:intron 40.0%
! ACTTTCACTGGTTGTTGGTT+TGG - chr7_4:46104156-46104175 None:intergenic 40.0%
TTTCCATTGACACACTCACA+TGG - chr7_4:46104232-46104251 None:intergenic 40.0%
TGCTGAAAAGGGACTCAAAA+TGG + chr7_4:46104427-46104446 Msa1157220:CDS 40.0%
! ATGGGTTTGGTAAACCAAGA+AGG - chr7_4:46104539-46104558 None:intergenic 40.0%
TCAGTATCAGCTGGATCAAT+GGG - chr7_4:46104557-46104576 None:intergenic 40.0%
! TTTTGACAGTCAGTATCAGC+TGG - chr7_4:46104566-46104585 None:intergenic 40.0%
AATTTCAGAAGGACAAGGAG+TGG - chr7_4:46104702-46104721 None:intergenic 40.0%
ATTATGCTGAAGTGTGTGCT+TGG + chr7_4:46104719-46104738 Msa1157220:CDS 40.0%
TTATGCTGAAGTGTGTGCTT+GGG + chr7_4:46104720-46104739 Msa1157220:CDS 40.0%
TCATCGACACCAATAACGAT+TGG + chr7_4:46104768-46104787 Msa1157220:CDS 40.0%
TCTCTTCGACTATTGACCTT+TGG + chr7_4:46104797-46104816 Msa1157220:CDS 40.0%
! AACCCAAGTTGAGCATATTG+CGG + chr7_4:46104952-46104971 Msa1157220:CDS 40.0%
ATCCGCAATATGCTCAACTT+GGG - chr7_4:46104957-46104976 None:intergenic 40.0%
TATCCGCAATATGCTCAACT+TGG - chr7_4:46104958-46104977 None:intergenic 40.0%
TAGTCACAAAGGATCGTTGT+GGG - chr7_4:46105018-46105037 None:intergenic 40.0%
ATAGTCACAAAGGATCGTTG+TGG - chr7_4:46105019-46105038 None:intergenic 40.0%
!! TTCTAGAATGCGTATGCACT+AGG + chr7_4:46105096-46105115 Msa1157220:intron 40.0%
AAGAAATTACCAGCACCGTT+CGG - chr7_4:46105222-46105241 None:intergenic 40.0%
GGTAATTTCTTCCCCTTGAA+AGG + chr7_4:46105231-46105250 Msa1157220:intron 40.0%
GAATGATAAGCCCTTTCAAG+GGG - chr7_4:46105245-46105264 None:intergenic 40.0%
!! TACCTTTTCTGGTCAGTTTG+AGG + chr7_4:46105301-46105320 Msa1157220:intron 40.0%
ATCCTCAAACTGACCAGAAA+AGG - chr7_4:46105306-46105325 None:intergenic 40.0%
! TGAGGATCTTTCTAGCAAGT+TGG + chr7_4:46105319-46105338 Msa1157220:intron 40.0%
! CTTTCTAGCAAGTTGGATGT+TGG + chr7_4:46105326-46105345 Msa1157220:intron 40.0%
!! CTTGTTGACTTAATAGGGAG+GGG - chr7_4:46105464-46105483 None:intergenic 40.0%
! CGATTTCTTTTGTCTGCCAA+TGG - chr7_4:46105501-46105520 None:intergenic 40.0%
CACCGGACTGAAGATAAAAA+AGG - chr7_4:46105552-46105571 None:intergenic 40.0%
ACAAGACACATTTCTGTCAC+CGG - chr7_4:46105569-46105588 None:intergenic 40.0%
TCCTGCATCAAGGACTAATA+AGG + chr7_4:46105588-46105607 Msa1157220:CDS 40.0%
ACCTTATTAGTCCTTGATGC+AGG - chr7_4:46105592-46105611 None:intergenic 40.0%
! ACAAATGGTTGGTACTTCCA+AGG + chr7_4:46105615-46105634 Msa1157220:CDS 40.0%
CTAGAATGGTACACCTTAGA+GGG - chr7_4:46105645-46105664 None:intergenic 40.0%
TGCCAATTTCTTTCTCTTCC+AGG + chr7_4:46105705-46105724 Msa1157220:intron 40.0%
CACCTGGAAGAGAAAGAAAT+TGG - chr7_4:46105710-46105729 None:intergenic 40.0%
ATTTCTTTCTCTTCCAGGTG+AGG + chr7_4:46105710-46105729 Msa1157220:intron 40.0%
TGGTGAAGTAGGTTATCTGT+TGG - chr7_4:46105823-46105842 None:intergenic 40.0%
AACAGATAACCTACTTCACC+AGG + chr7_4:46105822-46105841 Msa1157220:CDS 40.0%
AAAGAAAGCAAGTCATCTGC+GGG - chr7_4:46105886-46105905 None:intergenic 40.0%
CAAAGAAAGCAAGTCATCTG+CGG - chr7_4:46105887-46105906 None:intergenic 40.0%
! GATTGATTCTAGTGTAGCCA+TGG + chr7_4:46105966-46105985 Msa1157220:CDS 40.0%
CCTCATCTGATTGAATGCAA+AGG - chr7_4:46106052-46106071 None:intergenic 40.0%
CCTTTGCATTCAATCAGATG+AGG + chr7_4:46106049-46106068 Msa1157220:CDS 40.0%
TTGCATTCAATCAGATGAGG+AGG + chr7_4:46106052-46106071 Msa1157220:CDS 40.0%
!! TGATCTGCTCAAGAGTACTT+TGG - chr7_4:46106125-46106144 None:intergenic 40.0%
AGCAAGAGACAATTAAGGTC+AGG + chr7_4:46106295-46106314 Msa1157220:CDS 40.0%
GCAAGAGACAATTAAGGTCA+GGG + chr7_4:46106296-46106315 Msa1157220:CDS 40.0%
AGGTCAATTGCTTCTTGAGT+TGG - chr7_4:46106338-46106357 None:intergenic 40.0%
ATCAGACTGCGAAAACTCTA+AGG + chr7_4:46106460-46106479 Msa1157220:CDS 40.0%
ATTGGGTAATCACCAACAAC+AGG - chr7_4:46106539-46106558 None:intergenic 40.0%
! AGATAGAGAGTGTGTGTGAG+GGG - chr7_4:46102262-46102281 None:intergenic 45.0%
! GAGATAGAGAGTGTGTGTGA+GGG - chr7_4:46102263-46102282 None:intergenic 45.0%
! AGAGATAGAGAGTGTGTGTG+AGG - chr7_4:46102264-46102283 None:intergenic 45.0%
! GTTATTGGAGGGTTTTGCGT+CGG - chr7_4:46102361-46102380 None:intergenic 45.0%
ACGCAAAACCCTCCAATAAC+CGG + chr7_4:46102361-46102380 Msa1157220:CDS 45.0%
! TGAACTCACCGGTTATTGGA+GGG - chr7_4:46102372-46102391 None:intergenic 45.0%
! ATGAACTCACCGGTTATTGG+AGG - chr7_4:46102373-46102392 None:intergenic 45.0%
ACAGCGACGGATGTATTGAA+TGG - chr7_4:46102776-46102795 None:intergenic 45.0%
GACAAAACTCACAACAGCGA+CGG - chr7_4:46102789-46102808 None:intergenic 45.0%
CGACGCCATTTAGTGGAATA+AGG - chr7_4:46102882-46102901 None:intergenic 45.0%
GTAAAGCTGGCGGTCAAAAA+TGG + chr7_4:46103129-46103148 Msa1157220:CDS 45.0%
CAAGGCTCCTTACATTGCTA+TGG + chr7_4:46103265-46103284 Msa1157220:CDS 45.0%
GCTGCATGCCTACAATAGTA+AGG + chr7_4:46103313-46103332 Msa1157220:CDS 45.0%
GTGAGAGAGGAGTGAAAGTA+TGG + chr7_4:46103630-46103649 Msa1157220:intron 45.0%
! GAGAGAGGAGTGAAAGTATG+GGG + chr7_4:46103632-46103651 Msa1157220:intron 45.0%
! AGAGAGGAGTGAAAGTATGG+GGG + chr7_4:46103633-46103652 Msa1157220:intron 45.0%
! ACCATCTCTTTTGCCCTTGT+TGG + chr7_4:46103689-46103708 Msa1157220:intron 45.0%
ACACACTCACATGGTAGCAT+AGG - chr7_4:46104223-46104242 None:intergenic 45.0%
CTACCATGTGAGTGTGTCAA+TGG + chr7_4:46104226-46104245 Msa1157220:intron 45.0%
GATAGAAGGTAAACGCAGGA+TGG + chr7_4:46104393-46104412 Msa1157220:intron 45.0%
! ATCAGCTGGATCAATGGGTT+TGG - chr7_4:46104552-46104571 None:intergenic 45.0%
GTCAGTATCAGCTGGATCAA+TGG - chr7_4:46104558-46104577 None:intergenic 45.0%
TATGCTGAAGTGTGTGCTTG+GGG + chr7_4:46104721-46104740 Msa1157220:CDS 45.0%
! GCATAGGGTTTTCTGCTTGT+TGG + chr7_4:46104837-46104856 Msa1157220:CDS 45.0%
! GTTTTATGCCCCCAACCATT+TGG + chr7_4:46104865-46104884 Msa1157220:CDS 45.0%
!!! TGGTTTGACCGACTGGTTTT+TGG + chr7_4:46105192-46105211 Msa1157220:CDS 45.0%
ATGTGTCTTGTCCTGCATCA+AGG + chr7_4:46105578-46105597 Msa1157220:CDS 45.0%
! ATGGTTGGTACTTCCAAGGT+TGG + chr7_4:46105619-46105638 Msa1157220:intron 45.0%
GCTAGAATGGTACACCTTAG+AGG - chr7_4:46105646-46105665 None:intergenic 45.0%
TTGGCAGTCAGTCACCATTA+CGG - chr7_4:46105691-46105710 None:intergenic 45.0%
TGTCGACAGAGGAAGTTGAA+GGG - chr7_4:46105750-46105769 None:intergenic 45.0%
TTGTCGACAGAGGAAGTTGA+AGG - chr7_4:46105751-46105770 None:intergenic 45.0%
TCGTTGTTGCCTGAAATCCA+AGG + chr7_4:46105775-46105794 Msa1157220:CDS 45.0%
CGTTGTTGCCTGAAATCCAA+GGG + chr7_4:46105776-46105795 Msa1157220:CDS 45.0%
GTTGTTGCCTGAAATCCAAG+GGG + chr7_4:46105777-46105796 Msa1157220:CDS 45.0%
AGGTTATCTGTTGGACCCAA+AGG - chr7_4:46105814-46105833 None:intergenic 45.0%
AAGAAAGCAAGTCATCTGCG+GGG - chr7_4:46105885-46105904 None:intergenic 45.0%
AATCAGATGAGGAGGCTAGT+TGG + chr7_4:46106060-46106079 Msa1157220:CDS 45.0%
!! AGAGGCAGTTGTTGCTTTAG+AGG - chr7_4:46106096-46106115 None:intergenic 45.0%
!! AGAGTACTTTGGCTTGAGAG+AGG - chr7_4:46106114-46106133 None:intergenic 45.0%
CGCTTGCTTGTAAACAGGAA+GGG - chr7_4:46106196-46106215 None:intergenic 45.0%
CCTTCCTGTTTACAAGCAAG+CGG + chr7_4:46106194-46106213 Msa1157220:CDS 45.0%
TTCACCGCTTGCTTGTAAAC+AGG - chr7_4:46106201-46106220 None:intergenic 45.0%
CAAGCGGTGAATTCCAAAGA+CGG + chr7_4:46106210-46106229 Msa1157220:CDS 45.0%
GAAGCAATTGACCTTAGCTG+AGG + chr7_4:46106344-46106363 Msa1157220:CDS 45.0%
GAATTAGCTGAAGCCAACAC+TGG + chr7_4:46106369-46106388 Msa1157220:CDS 45.0%
AGAACTTGAGGACCTGTTGT+TGG + chr7_4:46106524-46106543 Msa1157220:CDS 45.0%
!! GGATGGCTCTGAAACCTGAA+AGG - chr7_4:46102535-46102554 None:intergenic 50.0%
! AGAGTCTGGAGTCAACGATG+AGG + chr7_4:46103477-46103496 Msa1157220:CDS 50.0%
GCCAACAAGGGCAAAAGAGA+TGG - chr7_4:46103693-46103712 None:intergenic 50.0%
TTTGTCGAGCACAGGCACTA+GGG - chr7_4:46104664-46104683 None:intergenic 50.0%
ATTTGTCGAGCACAGGCACT+AGG - chr7_4:46104665-46104684 None:intergenic 50.0%
TAGTGCCTGTGCTCGACAAA+TGG + chr7_4:46104664-46104683 Msa1157220:CDS 50.0%
AGTGCCTGTGCTCGACAAAT+GGG + chr7_4:46104665-46104684 Msa1157220:CDS 50.0%
TGAACCCATTTGTCGAGCAC+AGG - chr7_4:46104672-46104691 None:intergenic 50.0%
AGCACACATGAGGCTTGCAT+AGG + chr7_4:46104821-46104840 Msa1157220:CDS 50.0%
GCACACATGAGGCTTGCATA+GGG + chr7_4:46104822-46104841 Msa1157220:CDS 50.0%
TGCCCCCAACCATTTGGATT+TGG + chr7_4:46104871-46104890 Msa1157220:CDS 50.0%
GGCCAAATCCAAATGGTTGG+GGG - chr7_4:46104876-46104895 None:intergenic 50.0%
CGGCCAAATCCAAATGGTTG+GGG - chr7_4:46104877-46104896 None:intergenic 50.0%
CCGGCCAAATCCAAATGGTT+GGG - chr7_4:46104878-46104897 None:intergenic 50.0%
CCCAACCATTTGGATTTGGC+CGG + chr7_4:46104875-46104894 Msa1157220:CDS 50.0%
AACAGCCGGCCAAATCCAAA+TGG - chr7_4:46104883-46104902 None:intergenic 50.0%
TTTGGATTTGGCCGGCTGTT+TGG + chr7_4:46104883-46104902 Msa1157220:CDS 50.0%
! GCTCAGGTTGTGTGCATCTT+TGG + chr7_4:46105172-46105191 Msa1157220:CDS 50.0%
!! GCATCTTTGGTTTGACCGAC+TGG + chr7_4:46105185-46105204 Msa1157220:CDS 50.0%
TCGGTCGACCAAAAACCAGT+CGG - chr7_4:46105203-46105222 None:intergenic 50.0%
!!! CTGGTTTTTGGTCGACCGAA+CGG + chr7_4:46105204-46105223 Msa1157220:CDS 50.0%
! CATAGGGAGGCTACCTTTTC+TGG + chr7_4:46105290-46105309 Msa1157220:intron 50.0%
AGAAGCGACAGTACTGCCAT+TGG + chr7_4:46105482-46105501 Msa1157220:intron 50.0%
TGGCAGTCAGTCACCATTAC+GGG - chr7_4:46105690-46105709 None:intergenic 50.0%
AAGGAGGCAATTTCCTCACC+TGG - chr7_4:46105726-46105745 None:intergenic 50.0%
ACAGAGGAAGTTGAAGGGGA+AGG - chr7_4:46105745-46105764 None:intergenic 50.0%
GTCGACAGAGGAAGTTGAAG+GGG - chr7_4:46105749-46105768 None:intergenic 50.0%
CAACGAAGACTTGTCGACAG+AGG - chr7_4:46105761-46105780 None:intergenic 50.0%
CTTGCTGAACCTGGTGAAGT+AGG - chr7_4:46105834-46105853 None:intergenic 50.0%
CAATACGCTCTTGCTGAACC+TGG - chr7_4:46105843-46105862 None:intergenic 50.0%
! CAGGTTCAGCAAGAGCGTAT+TGG + chr7_4:46105841-46105860 Msa1157220:CDS 50.0%
AGAAGCTGCAGGACTTGAGT+CGG - chr7_4:46105914-46105933 None:intergenic 50.0%
!! CAGCTTCTGCGTTTTCTGGT+CGG + chr7_4:46105926-46105945 Msa1157220:CDS 50.0%
! GAGACTAGTGTCGAAGCCTT+TGG + chr7_4:46106008-46106027 Msa1157220:CDS 50.0%
TCAGCAGAAGCAACGTCCAA+AGG - chr7_4:46106027-46106046 None:intergenic 50.0%
CCGCTTGCTTGTAAACAGGA+AGG - chr7_4:46106197-46106216 None:intergenic 50.0%
GGTGAATTCCAAAGACGGCT+TGG + chr7_4:46106215-46106234 Msa1157220:CDS 50.0%
CTTCTTCACCAAGCCGTCTT+TGG - chr7_4:46106226-46106245 None:intergenic 50.0%
GCAATTGACCTTAGCTGAGG+CGG + chr7_4:46106347-46106366 Msa1157220:CDS 50.0%
AGCTAATTCCGCCTCAGCTA+AGG - chr7_4:46106358-46106377 None:intergenic 50.0%
CTGATTCACCTCGTCACGAA+GGG - chr7_4:46106445-46106464 None:intergenic 50.0%
TCTGATTCACCTCGTCACGA+AGG - chr7_4:46106446-46106465 None:intergenic 50.0%
!! TTTGCGTCGGCGGTGGTTTT+AGG - chr7_4:46102348-46102367 None:intergenic 55.0%
! ATTGGAGGGTTTTGCGTCGG+CGG - chr7_4:46102358-46102377 None:intergenic 55.0%
! GTCTGGAGTCAACGATGAGG+AGG + chr7_4:46103480-46103499 Msa1157220:CDS 55.0%
GAGAACGAGCGACCAAAGGT+TGG - chr7_4:46104511-46104530 None:intergenic 55.0%
GAAGTGTGTGCTTGGGGTTG+AGG + chr7_4:46104727-46104746 Msa1157220:CDS 55.0%
GACCTTTGGCAGCACACATG+AGG + chr7_4:46104811-46104830 Msa1157220:CDS 55.0%
AGCCTCATGTGTGCTGCCAA+AGG - chr7_4:46104816-46104835 None:intergenic 55.0%
GCCGGCCAAATCCAAATGGT+TGG - chr7_4:46104879-46104898 None:intergenic 55.0%
ATTTGGCCGGCTGTTTGGTC+AGG + chr7_4:46104888-46104907 Msa1157220:CDS 55.0%
TTTGGCCGGCTGTTTGGTCA+GGG + chr7_4:46104889-46104908 Msa1157220:CDS 55.0%
GATGCACACAACCTGAGCAC+TGG - chr7_4:46105170-46105189 None:intergenic 55.0%
ATAGGGAGGGGTTGACCCAA+AGG - chr7_4:46105452-46105471 None:intergenic 55.0%
! CTTCCAAGGTTGGCCCTCTA+AGG + chr7_4:46105629-46105648 Msa1157220:intron 55.0%
ACACCTTAGAGGGCCAACCT+TGG - chr7_4:46105635-46105654 None:intergenic 55.0%
GAGGAAGTTGAAGGGGAAGG+AGG - chr7_4:46105742-46105761 None:intergenic 55.0%
GACTGGACCCCTTGGATTTC+AGG - chr7_4:46105787-46105806 None:intergenic 55.0%
TTGGACCCAAAGGCTTCGAC+TGG - chr7_4:46105804-46105823 None:intergenic 55.0%
CCAGAAAACGCAGAAGCTGC+AGG - chr7_4:46105925-46105944 None:intergenic 55.0%
! CCTGCAGCTTCTGCGTTTTC+TGG + chr7_4:46105922-46105941 Msa1157220:CDS 55.0%
AGAATCAATCCCAGCAGCCG+CGG - chr7_4:46105956-46105975 None:intergenic 55.0%
CATCAATGCCCTTCGTGACG+AGG + chr7_4:46106434-46106453 Msa1157220:CDS 55.0%
!!! GGCGGTGGTTTTAGGCATGG+CGG - chr7_4:46102340-46102359 None:intergenic 60.0%
!!! GTCGGCGGTGGTTTTAGGCA+TGG - chr7_4:46102343-46102362 None:intergenic 60.0%
CCTTTGGTCGCTCGTTCTCG+CGG + chr7_4:46104512-46104531 Msa1157220:CDS 60.0%
CTCGTTCTCGCGGTCCTTCT+TGG + chr7_4:46104522-46104541 Msa1157220:CDS 60.0%
TGTGCTTGGGGTTGAGGCGA+AGG + chr7_4:46104733-46104752 Msa1157220:CDS 60.0%
GTCAGCCCTGACCAAACAGC+CGG - chr7_4:46104897-46104916 None:intergenic 60.0%
TTTGGTCGACCGAACGGTGC+TGG + chr7_4:46105210-46105229 Msa1157220:CDS 60.0%
AAGGCTTCGACTGGACCCCT+TGG - chr7_4:46105795-46105814 None:intergenic 60.0%
AGGGGTCCAGTCGAAGCCTT+TGG + chr7_4:46105795-46105814 Msa1157220:CDS 60.0%
GGGGTCCAGTCGAAGCCTTT+GGG + chr7_4:46105796-46105815 Msa1157220:CDS 60.0%
!! GTTTTCTGGTCGGTCCTCCG+CGG + chr7_4:46105936-46105955 Msa1157220:CDS 60.0%
CCGCGAGAACGAGCGACCAA+AGG - chr7_4:46104515-46104534 None:intergenic 65.0%
GTCGAGCACAGGCACTAGGG+AGG - chr7_4:46104661-46104680 None:intergenic 65.0%
ATCAATCCCAGCAGCCGCGG+AGG - chr7_4:46105953-46105972 None:intergenic 65.0%
!! GGAGGGTTTTGCGTCGGCGG+TGG - chr7_4:46102355-46102374 None:intergenic 70.0%
GTCGGTCCTCCGCGGCTGCT+GGG + chr7_4:46105944-46105963 Msa1157220:CDS 75.0%
! GGTCGGTCCTCCGCGGCTGC+TGG + chr7_4:46105943-46105962 Msa1157220:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46102255 46106572 46102255 ID=Msa1157220;Name=Msa1157220
chr7_4 mRNA 46102255 46106572 46102255 ID=Msa1157220-mRNA-1;Parent=Msa1157220;Name=Msa1157220-mRNA-1;_AED=0.45;_eAED=0.45;_QI=87|0.18|0.16|0.25|1|1|12|0|668
chr7_4 exon 46102255 46102382 46102255 ID=Msa1157220-mRNA-1:exon:12037;Parent=Msa1157220-mRNA-1
chr7_4 exon 46102489 46102575 46102489 ID=Msa1157220-mRNA-1:exon:12038;Parent=Msa1157220-mRNA-1
chr7_4 exon 46102739 46102796 46102739 ID=Msa1157220-mRNA-1:exon:12039;Parent=Msa1157220-mRNA-1
chr7_4 exon 46103125 46103169 46103125 ID=Msa1157220-mRNA-1:exon:12040;Parent=Msa1157220-mRNA-1
chr7_4 exon 46103263 46103334 46103263 ID=Msa1157220-mRNA-1:exon:12041;Parent=Msa1157220-mRNA-1
chr7_4 exon 46103436 46103510 46103436 ID=Msa1157220-mRNA-1:exon:12042;Parent=Msa1157220-mRNA-1
chr7_4 exon 46103603 46103629 46103603 ID=Msa1157220-mRNA-1:exon:12043;Parent=Msa1157220-mRNA-1
chr7_4 exon 46104398 46104543 46104398 ID=Msa1157220-mRNA-1:exon:12044;Parent=Msa1157220-mRNA-1
chr7_4 exon 46104622 46105075 46104622 ID=Msa1157220-mRNA-1:exon:12045;Parent=Msa1157220-mRNA-1
chr7_4 exon 46105148 46105231 46105148 ID=Msa1157220-mRNA-1:exon:12046;Parent=Msa1157220-mRNA-1
chr7_4 exon 46105565 46105636 46105565 ID=Msa1157220-mRNA-1:exon:12047;Parent=Msa1157220-mRNA-1
chr7_4 exon 46105727 46106572 46105727 ID=Msa1157220-mRNA-1:exon:12048;Parent=Msa1157220-mRNA-1
chr7_4 five_prime_UTR 46102255 46102341 46102255 ID=Msa1157220-mRNA-1:five_prime_utr;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46102342 46102382 46102342 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46102489 46102575 46102489 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46102739 46102796 46102739 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46103125 46103169 46103125 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46103263 46103334 46103263 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46103436 46103510 46103436 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46103603 46103629 46103603 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46104398 46104543 46104398 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46104622 46105075 46104622 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46105148 46105231 46105148 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46105565 46105636 46105565 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
chr7_4 CDS 46105727 46106572 46105727 ID=Msa1157220-mRNA-1:cds;Parent=Msa1157220-mRNA-1
Gene Sequence

>Msa1157220

ATGCCTAAAACCACCGCCGACGCAAAACCCTCCAATAACCGGTTTGAAACCAGTCCAAAGGAGTTTAAGAAAGCTAAGAAGGATCCTTTCAGGTTTCAGAGCCATCCATCTCCTTTCTTTCTGTTCATGTCTGATTTCAGAGTGATGTTCATGGCGAAAAATCCATTCAATACATCCGTCGCTGTTGTTGGTAAAGCTGGCGGTCAAAAATGGAAATCGATGTCGAATGCTGACAAGGCTCCTTACATTGCTATGGCAGAAAAGAAGAAAGAGGAATATGAGCTGCATGCCTACAATAGTAAGCTGTTGAAAGAATTGCTTGGTGAAAGAAATTTTGACAAGTCAGAGTCTGGAGTCAACGATGAGGAGGAAGATGATGATGAGGATGATGAGGGAATAAATAATAAGGTAAACGCAGGATGGAATGTAAAAACTGCTGAAAAGGGACTCAAAATGGAAATACTTGAAATTAAATTAGTTGAAGTTACATACACAACTTTGTCCAACATTAACTTCCAACCTTTGGTCGCTCGTTCTCGCGGTCCTTCTTGTTTCCCAGAATTCAATTCTGGTCATGTGTCTGCTTTCCTCCCTAGTGCCTGTGCTCGACAAATGGGTTCATGTCAAGCCACTCCTTGTCCTTCTGAAATTATGCTGAAGTGTGTGCTTGGGGTTGAGGCGAAGGAATTCGACAAGATCATCGACACCAATAACGATTGGTTGAAATCTCTTCGACTATTGACCTTTGGCAGCACACATGAGGCTTGCATAGGGTTTTCTGCTTGTTGGAAGAAGTTTTATGCCCCCAACCATTTGGATTTGGCCGGCTGTTTGGTCAGGGCTGACACATCTCTTACGCAGCTTGCAGTGTCTTCAAGCGAAACCCAAGTTGAGCATATTGCGGATATACGAGCCTTTCAAAAACGTTATAGGCTTAAATGGTACCCACAACGATCCTTTGTGACTATTAAAACTGTTAATGAAGTCTTGGCTATACTTAAAAAGAAGCTTCCTTATAACAAAACCAGTGCTCAGGTTGTGTGCATCTTTGGTTTGACCGACTGGTTTTTGGTCGACCGAACGGTGCTGTCCGGTGACAGAAATGTGTCTTGTCCTGCATCAAGGACTAATAAGGTAACACAAATGGTTGGTACTTCCAAGGTGAGGAAATTGCCTCCTTCCCCTTCAACTTCCTCTGTCGACAAGTCTTCGTTGTTGCCTGAAATCCAAGGGGTCCAGTCGAAGCCTTTGGGTCCAACAGATAACCTACTTCACCAGGTTCAGCAAGAGCGTATTGGCGACACTGACAATGCTGACCCCGCAGATGACTTGCTTTCTTTGCTGACCGACTCAAGTCCTGCAGCTTCTGCGTTTTCTGGTCGGTCCTCCGCGGCTGCTGGGATTGATTCTAGTGTAGCCATGGAACTTTTTAAAGAACTGAAGAGACTAGTGTCGAAGCCTTTGGACGTTGCTTCTGCTGACACCTTTGCATTCAATCAGATGAGGAGGCTAGTTGGAGAACTCAAGCCTCTAAAGCAACAACTGCCTCTCTCAAGCCAAAGTACTCTTGAGCAGATCAACAATTTTCTATCCCTTCATGTCTCAAAGAATGCTTTCTTAACAGCTACCCTTCCTGTTTACAAGCAAGCGGTGAATTCCAAAGACGGCTTGGTGAAGAAGCTCCTTCCTCTCAAAGAACAAAAAGAAAAGATTGCAGTAAACAAAAAACAGCAAGAGACAATTAAGGTCAGGGCTGAAGAGAAAGTTGACCAACTCAAGAAGCAATTGACCTTAGCTGAGGCGGAATTAGCTGAAGCCAACACTGGTATTGATGTCTTTATCAATTTGGAGAAGAAGCGTGTCGACAGCATCAATGCCCTTCGTGACGAGGTGAATCAGACTGCGAAAACTCTAAGGAATCTTCAGTCTGACTATGAGTTAGCAGTATCAACTAAGAAAGAACTTGAGGACCTGTTGTTGGTGATTACCCAATCCAGTTCCCCTTGA

Protein sequence

>Msa1157220

MPKTTADAKPSNNRFETSPKEFKKAKKDPFRFQSHPSPFFLFMSDFRVMFMAKNPFNTSVAVVGKAGGQKWKSMSNADKAPYIAMAEKKKEEYELHAYNSKLLKELLGERNFDKSESGVNDEEEDDDEDDEGINNKVNAGWNVKTAEKGLKMEILEIKLVEVTYTTLSNINFQPLVARSRGPSCFPEFNSGHVSAFLPSACARQMGSCQATPCPSEIMLKCVLGVEAKEFDKIIDTNNDWLKSLRLLTFGSTHEACIGFSACWKKFYAPNHLDLAGCLVRADTSLTQLAVSSSETQVEHIADIRAFQKRYRLKWYPQRSFVTIKTVNEVLAILKKKLPYNKTSAQVVCIFGLTDWFLVDRTVLSGDRNVSCPASRTNKVTQMVGTSKVRKLPPSPSTSSVDKSSLLPEIQGVQSKPLGPTDNLLHQVQQERIGDTDNADPADDLLSLLTDSSPAASAFSGRSSAAAGIDSSVAMELFKELKRLVSKPLDVASADTFAFNQMRRLVGELKPLKQQLPLSSQSTLEQINNFLSLHVSKNAFLTATLPVYKQAVNSKDGLVKKLLPLKEQKEKIAVNKKQQETIKVRAEEKVDQLKKQLTLAEAELAEANTGIDVFINLEKKRVDSINALRDEVNQTAKTLRNLQSDYELAVSTKKELEDLLLVITQSSSP*