AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157600 MtrunA17_Chr7g0251891 98.990 198 2 0 118 315 7 204 8.72e-148 413
Msa1157600 MtrunA17_Chr7g0251881 86.154 130 8 3 2 127 1 124 5.56e-68 209
Msa1157600 MtrunA17_Chr7g0237841 37.387 222 82 4 68 232 507 728 3.34e-33 129
Msa1157600 MtrunA17_Chr2g0281191 39.394 132 71 3 127 253 352 479 1.76e-20 92.0
Msa1157600 MtrunA17_Chr5g0432721 49.412 85 42 1 127 211 321 404 1.07e-19 89.7
Msa1157600 MtrunA17_Chr4g0012861 39.806 103 61 1 127 229 314 415 1.24e-19 89.7
Msa1157600 MtrunA17_Chr3g0107701 40.777 103 60 1 127 229 338 439 1.47e-19 89.4
Msa1157600 MtrunA17_Chr4g0047031 40.179 112 65 2 120 231 170 279 3.18e-19 87.0
Msa1157600 MtrunA17_Chr7g0244871 43.182 88 49 1 127 214 12 98 1.11e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157600 AT3G26790.1 50.323 310 94 12 46 315 24 313 3.39e-86 261
Msa1157600 AT3G24650.1 38.785 214 78 5 68 228 459 672 1.05e-35 137
Msa1157600 AT1G28300.1 49.606 127 64 0 119 245 162 288 2.58e-34 129
Msa1157600 AT2G30470.1 39.806 103 61 1 127 229 294 395 7.94e-21 93.6
Msa1157600 AT4G32010.2 34.104 173 98 5 127 296 281 440 1.76e-20 92.4
Msa1157600 AT4G32010.1 34.104 173 98 5 127 296 285 444 1.92e-20 92.4
Msa1157600 AT4G21550.2 34.848 132 79 4 127 258 327 451 6.28e-17 81.6
Msa1157600 AT4G21550.1 38.835 103 60 2 127 229 327 426 6.84e-17 81.6
Msa1157600 AT4G21550.3 38.835 103 60 2 127 229 327 426 7.46e-17 81.3
Msa1157600 AT1G13260.1 35.897 117 67 5 122 233 182 295 4.92e-11 63.2

Find 59 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTTCTTCAACTCCTTT+TGG 0.172423 7_4:-46628759 None:intergenic
TGATCCTATTCTTGAGTAAT+TGG 0.226664 7_4:-46629824 None:intergenic
ATTATCTTGGTAAACCATAA+TGG 0.319330 7_4:-46629467 None:intergenic
GGTTTAGTTGCTGCTGCATT+TGG 0.326686 7_4:+46626729 Msa1157600:CDS
TACATTCGACTGTTATTGTT+AGG 0.354796 7_4:-46629299 None:intergenic
TGCATTACTACAGGTAATTC+AGG 0.355023 7_4:+46629603 Msa1157600:intron
ATAGGATCAGTTGAAACATT+TGG 0.372576 7_4:+46629838 Msa1157600:CDS
ACGCTTTGGAGACTCCATTA+TGG 0.373590 7_4:+46629453 Msa1157600:CDS
GAATTCCTTCCTTCGATTCA+AGG 0.374741 7_4:-46628962 None:intergenic
CTGCATTTGGAACTGTTCAT+AGG 0.379357 7_4:+46626742 Msa1157600:CDS
AACCGAGGCGTGTGGTTTCA+TGG 0.390478 7_4:+46626608 Msa1157600:CDS
AACAACAACAACAAGATTAA+CGG 0.419074 7_4:+46626678 Msa1157600:CDS
AGCACACATGGTCTACGCTT+TGG 0.436188 7_4:+46629439 Msa1157600:CDS
TTGTGATCAAGATGAGTATA+TGG 0.437591 7_4:+46629636 Msa1157600:CDS
AGAGGTGGAATTGGAGAGAT+TGG 0.443660 7_4:-46626864 None:intergenic
CCTTCCTTCGATTCAAGGAC+AGG 0.443951 7_4:-46628957 None:intergenic
GAACTGTTCATAGGAAGAAA+AGG 0.451838 7_4:+46626751 Msa1157600:CDS
GATAGCAATGATGATGGATG+AGG 0.453480 7_4:+46626554 None:intergenic
ATGACCAATTACTCAAGAAT+AGG 0.459124 7_4:+46629820 Msa1157600:CDS
AAAGTAGATAGCAATGATGA+TGG 0.461976 7_4:+46626548 None:intergenic
GTTTATAGGAAATCGATCAT+AGG 0.469630 7_4:+46628719 Msa1157600:intron
ATATAGATGGTCTTCATGTA+TGG 0.471743 7_4:+46629000 Msa1157600:CDS
TATCTTCGTCGATGATTATG+AGG 0.472524 7_4:+46629684 Msa1157600:CDS
TCTCTTGATGACTTCTATTG+AGG 0.486619 7_4:+46629877 Msa1157600:CDS
ATGTATGGAGTTTCAAGTAC+AGG 0.489515 7_4:+46629015 Msa1157600:CDS
GAGGCGTGTGGTTTCATGGC+AGG 0.489847 7_4:+46626612 Msa1157600:CDS
CTCAGCATGAATGATATAGA+TGG 0.492894 7_4:+46628987 Msa1157600:CDS
ACAACAACAACAAGATTAAC+GGG 0.499806 7_4:+46626679 Msa1157600:CDS
ATACTTGTATCATTCATTGC+AGG 0.501561 7_4:-46629736 None:intergenic
CCTTCCTGTCCTTGAATCGA+AGG 0.505006 7_4:+46628953 Msa1157600:CDS
TAGGAGAATGGTGTTGCCTA+AGG 0.511895 7_4:+46628795 Msa1157600:CDS
TAGGCAACACCATTCTCCTA+AGG 0.515359 7_4:-46628792 None:intergenic
AGATTAACGGGTCGGGTCAA+CGG 0.518369 7_4:+46626691 Msa1157600:CDS
TGCCATGAAACCACACGCCT+CGG 0.521021 7_4:-46626610 None:intergenic
TGTTAGCTCCCTTAGGAGAA+TGG 0.536299 7_4:+46628783 Msa1157600:CDS
CAACGGATCCATCATGATCA+TGG 0.538714 7_4:+46626708 Msa1157600:CDS
CTAGGGTTTGTCAACGTGAA+AGG 0.540011 7_4:+46626648 Msa1157600:CDS
GGAGACTTTGTTAGCACACA+TGG 0.544519 7_4:+46629427 Msa1157600:intron
GCAGGTGTTGAAGATGAACT+AGG 0.544873 7_4:+46626630 Msa1157600:CDS
CAACTAAACCATGATCATGA+TGG 0.545398 7_4:-46626716 None:intergenic
AACAACAAGATTAACGGGTC+GGG 0.549708 7_4:+46626684 Msa1157600:CDS
ATAGGAAGAAAAGGATGGCT+AGG 0.560627 7_4:+46626760 Msa1157600:CDS
CAACAACAAGATTAACGGGT+CGG 0.560654 7_4:+46626683 Msa1157600:CDS
ATAGCAATGATGATGGATGA+GGG 0.562602 7_4:+46626555 None:intergenic
ACAGTGATGTTAGCTCCCTT+AGG 0.583324 7_4:+46628776 Msa1157600:CDS
CAGGTGTTGAAGATGAACTA+GGG 0.583873 7_4:+46626631 Msa1157600:CDS
CCTGTCCTTGAATCGAAGGA+AGG 0.585425 7_4:+46628957 Msa1157600:CDS
TATAGGAAATCGATCATAGG+AGG 0.597683 7_4:+46628722 Msa1157600:intron
AGAAGGTAAGAAGAAAGTTG+TGG 0.604435 7_4:+46626578 Msa1157600:CDS
AGGCAACACCATTCTCCTAA+GGG 0.607377 7_4:-46628791 None:intergenic
ATGATGATGGATGAGGGAGA+AGG 0.610410 7_4:+46626561 Msa1157600:CDS
CCTTCGATTCAAGGACAGGA+AGG 0.620428 7_4:-46628953 None:intergenic
TGGAGAGATTGGCACGTGCG+AGG 0.625104 7_4:-46626853 None:intergenic
ATGTATGTACTTGAAAACAC+TGG 0.631186 7_4:+46629317 Msa1157600:CDS
GTTCAGAAAACCGAGGCGTG+TGG 0.632033 7_4:+46626600 Msa1157600:CDS
TGTTCATAGGAAGAAAAGGA+TGG 0.632115 7_4:+46626755 Msa1157600:CDS
AAGTGGTGAGTCATTTGAGA+TGG 0.633283 7_4:-46629779 None:intergenic
TAACTTGCAGAAAGCAGCAG+AGG 0.635910 7_4:+46628926 Msa1157600:intron
AGTTGTGGTTCAGAAAACCG+AGG 0.753509 7_4:+46626593 Msa1157600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTTATTATATTATA+AGG - chr7_4:46628905-46628924 None:intergenic 0.0%
!! AAAAAAAAAAAAAAACTTCT+TGG - chr7_4:46627198-46627217 None:intergenic 10.0%
!!! TTTTTATACATATTATTACT+TGG - chr7_4:46627553-46627572 None:intergenic 10.0%
!! AGTAATAATATGTATAAAAA+TGG + chr7_4:46627553-46627572 Msa1157600:intron 10.0%
!!! TTAAAATATTTGATGATTAT+TGG + chr7_4:46628387-46628406 Msa1157600:intron 10.0%
!! AAAATCTATACAATTAACAT+CGG - chr7_4:46627074-46627093 None:intergenic 15.0%
!! ATATGTATAAAAATGGAAAA+AGG + chr7_4:46627560-46627579 Msa1157600:intron 15.0%
!!! TGAATGAATAAACATTATTT+TGG - chr7_4:46627665-46627684 None:intergenic 15.0%
!! TGTTAATTAATACTATTCAT+CGG + chr7_4:46627723-46627742 Msa1157600:intron 15.0%
!!! AATTACGAAAGTTAATTTTA+CGG + chr7_4:46628123-46628142 Msa1157600:intron 15.0%
!! TGTTGGATATAAATATAATA+TGG + chr7_4:46628531-46628550 Msa1157600:intron 15.0%
!! AAATTAGTTAATACCATAAA+TGG + chr7_4:46628677-46628696 Msa1157600:intron 15.0%
!! ATTATATTATAAGGTTATGA+TGG - chr7_4:46628896-46628915 None:intergenic 15.0%
!! AAATTTAATGCAATTACATT+CGG + chr7_4:46629096-46629115 Msa1157600:intron 15.0%
!!! TTAGTTTGTTAAATATTTTC+AGG + chr7_4:46629406-46629425 Msa1157600:intron 15.0%
!! CAATTCAAAAGATTAATCTT+TGG - chr7_4:46627257-46627276 None:intergenic 20.0%
!!! CAAAGATTAATCTTTTGAAT+TGG + chr7_4:46627255-46627274 Msa1157600:intron 20.0%
!! ATAATTAAATAAAAGGGAAG+TGG + chr7_4:46627416-46627435 Msa1157600:intron 20.0%
!!! AAGTAATGCTTATAGAATTT+TGG + chr7_4:46627768-46627787 Msa1157600:intron 20.0%
!! TTAACTATATCAATGTGTAT+AGG + chr7_4:46627809-46627828 Msa1157600:intron 20.0%
!!! ATTACGAAAGTTAATTTTAC+GGG + chr7_4:46628124-46628143 Msa1157600:intron 20.0%
!!! AAATATTTGATGATTATTGG+TGG + chr7_4:46628390-46628409 Msa1157600:intron 20.0%
!!! ACAATTTTCATTCTGTTTAT+AGG + chr7_4:46628705-46628724 Msa1157600:intron 20.0%
!! AATTGCATTAAATTTCATTC+TGG - chr7_4:46629091-46629110 None:intergenic 20.0%
!!! AATTGTACTTTAAAGTCATT+TGG + chr7_4:46629200-46629219 Msa1157600:intron 20.0%
!!! ATTGTACTTTAAAGTCATTT+GGG + chr7_4:46629201-46629220 Msa1157600:intron 20.0%
!!! AATTGTGATTTTGATTATCT+TGG - chr7_4:46629483-46629502 None:intergenic 20.0%
! AACAACAACAACAAGATTAA+CGG + chr7_4:46626678-46626697 Msa1157600:CDS 25.0%
!!! ATTTTTGAGATGAATAGTGA+TGG - chr7_4:46626808-46626827 None:intergenic 25.0%
!! TTTTTATTATCTGTCCTAGT+TGG + chr7_4:46626968-46626987 Msa1157600:intron 25.0%
! TAGTAGTAGTTTGATCTTAA+TGG + chr7_4:46627135-46627154 Msa1157600:intron 25.0%
!! TTATCTTCATTTTCTTGTGT+GGG - chr7_4:46627363-46627382 None:intergenic 25.0%
!! TTTATCTTCATTTTCTTGTG+TGG - chr7_4:46627364-46627383 None:intergenic 25.0%
! ATAAAAATGGAAAAAGGAAG+AGG + chr7_4:46627566-46627585 Msa1157600:intron 25.0%
! ATAGTTAAACCAAAAAGACA+AGG - chr7_4:46627797-46627816 None:intergenic 25.0%
! AATTCAGAAGTCTATTCTAT+GGG + chr7_4:46627838-46627857 Msa1157600:intron 25.0%
! AATTCAGAAGTCAATTTCAT+AGG + chr7_4:46627960-46627979 Msa1157600:intron 25.0%
!!! ATTTCGAAAGTCGATTTTAT+TGG + chr7_4:46628058-46628077 Msa1157600:intron 25.0%
! TAAATAGAGCCTTTACATTT+GGG + chr7_4:46628413-46628432 Msa1157600:intron 25.0%
! ACATAAATTCCCAAATGTAA+AGG - chr7_4:46628425-46628444 None:intergenic 25.0%
! AAACAGAATGAAAATTGTCA+AGG - chr7_4:46628703-46628722 None:intergenic 25.0%
!! TATTTCTATTTCAATACTGC+AGG + chr7_4:46629270-46629289 Msa1157600:intron 25.0%
! ATTATCTTGGTAAACCATAA+TGG - chr7_4:46629470-46629489 None:intergenic 25.0%
! ATGACAGGAAAAAAAATACA+TGG - chr7_4:46629582-46629601 None:intergenic 25.0%
ACAACAACAACAAGATTAAC+GGG + chr7_4:46626679-46626698 Msa1157600:CDS 30.0%
! AAGTTTTTGCAAATCCAACT+AGG - chr7_4:46626985-46627004 None:intergenic 30.0%
!! TTTTAACTCTTTGCTAGAAG+AGG + chr7_4:46627590-46627609 Msa1157600:intron 30.0%
CAATTCAGAAGTCTATTCTA+TGG + chr7_4:46627837-46627856 Msa1157600:intron 30.0%
!! CTACTCATTTTAGAAGTCAA+CGG + chr7_4:46627881-46627900 Msa1157600:intron 30.0%
GGTCAACTATATCATGTATA+CGG + chr7_4:46627981-46628000 Msa1157600:intron 30.0%
!! ATTTCGGAAGTCGATTTTAT+GGG + chr7_4:46628009-46628028 Msa1157600:intron 30.0%
!! AAGTCGATTTTATTGGTCAA+CGG + chr7_4:46628065-46628084 Msa1157600:intron 30.0%
! AAGTTAATTTTACGGGTCAA+CGG + chr7_4:46628131-46628150 Msa1157600:intron 30.0%
GTAAATAGAGCCTTTACATT+TGG + chr7_4:46628412-46628431 Msa1157600:intron 30.0%
GTATTTCAAGATAAGCCATA+AGG + chr7_4:46628443-46628462 Msa1157600:intron 30.0%
AGTAAATGCTGCAAAAAGTT+GGG - chr7_4:46628624-46628643 None:intergenic 30.0%
TAGTAAATGCTGCAAAAAGT+TGG - chr7_4:46628625-46628644 None:intergenic 30.0%
AAAATTGTCAAGGCCATTTA+TGG - chr7_4:46628693-46628712 None:intergenic 30.0%
GTTTATAGGAAATCGATCAT+AGG + chr7_4:46628719-46628738 Msa1157600:intron 30.0%
GAAATGAAGTCTATAAGCAA+AGG - chr7_4:46628826-46628845 None:intergenic 30.0%
ATATAGATGGTCTTCATGTA+TGG + chr7_4:46629000-46629019 Msa1157600:CDS 30.0%
GTCAATCATTCTTTATCTGA+CGG - chr7_4:46629170-46629189 None:intergenic 30.0%
! TATTTCAATACTGCAGGTTT+TGG + chr7_4:46629276-46629295 Msa1157600:intron 30.0%
TACATTCGACTGTTATTGTT+AGG - chr7_4:46629302-46629321 None:intergenic 30.0%
ATGTATGTACTTGAAAACAC+TGG + chr7_4:46629317-46629336 Msa1157600:CDS 30.0%
AGCAAAGTTTAACTCTCAAA+TGG - chr7_4:46629376-46629395 None:intergenic 30.0%
TTGTGATCAAGATGAGTATA+TGG + chr7_4:46629636-46629655 Msa1157600:CDS 30.0%
ATACTTGTATCATTCATTGC+AGG - chr7_4:46629739-46629758 None:intergenic 30.0%
ATGACCAATTACTCAAGAAT+AGG + chr7_4:46629820-46629839 Msa1157600:CDS 30.0%
TGATCCTATTCTTGAGTAAT+TGG - chr7_4:46629827-46629846 None:intergenic 30.0%
ATAGGATCAGTTGAAACATT+TGG + chr7_4:46629838-46629857 Msa1157600:CDS 30.0%
AGAAGGTAAGAAGAAAGTTG+TGG + chr7_4:46626578-46626597 Msa1157600:CDS 35.0%
CAACTAAACCATGATCATGA+TGG - chr7_4:46626719-46626738 None:intergenic 35.0%
GAACTGTTCATAGGAAGAAA+AGG + chr7_4:46626751-46626770 Msa1157600:CDS 35.0%
TGTTCATAGGAAGAAAAGGA+TGG + chr7_4:46626755-46626774 Msa1157600:CDS 35.0%
GTAGTAGTAGTAGTAGAAGA+AGG - chr7_4:46626834-46626853 None:intergenic 35.0%
GAATGAAAAAGAGGTGGAAT+TGG - chr7_4:46626876-46626895 None:intergenic 35.0%
AAAAAAAAACTCACACGTGC+GGG - chr7_4:46626906-46626925 None:intergenic 35.0%
GAAAAAAAAACTCACACGTG+CGG - chr7_4:46626907-46626926 None:intergenic 35.0%
AAGAACTTCGTCATCTATTG+TGG - chr7_4:46627287-46627306 None:intergenic 35.0%
!! CAACGGTGTTAAGTCATTTT+AGG - chr7_4:46627310-46627329 None:intergenic 35.0%
GGGTGTGTATAAATTAGTGT+AGG - chr7_4:46627343-46627362 None:intergenic 35.0%
ATAAAAGGGAAGTGGATGTA+TGG + chr7_4:46627424-46627443 Msa1157600:intron 35.0%
TAAAAGGGAAGTGGATGTAT+GGG + chr7_4:46627425-46627444 Msa1157600:intron 35.0%
!! TTTTGGTGACCTTGTCTTTT+TGG + chr7_4:46627785-46627804 Msa1157600:intron 35.0%
CACGTATATGCTACTCATTT+CGG + chr7_4:46627907-46627926 Msa1157600:intron 35.0%
!! CATTTCGGAAGTCGATTTTA+TGG + chr7_4:46628008-46628027 Msa1157600:intron 35.0%
TCTCGATCGTTTATAGAGAT+CGG + chr7_4:46628170-46628189 Msa1157600:intron 35.0%
ATCGAGTCGATCTAAGTTAT+TGG - chr7_4:46628254-46628273 None:intergenic 35.0%
! AAGCTGAAAACTCCTACTTT+TGG + chr7_4:46628337-46628356 Msa1157600:intron 35.0%
AGATTTAGGGAACCAAAAGT+AGG - chr7_4:46628352-46628371 None:intergenic 35.0%
!!! CTTTTGGTTCCCTAAATCTT+TGG + chr7_4:46628353-46628372 Msa1157600:intron 35.0%
TTTACTCGATGCTCTTATGT+TGG + chr7_4:46628514-46628533 Msa1157600:intron 35.0%
TATAGGAAATCGATCATAGG+AGG + chr7_4:46628722-46628741 Msa1157600:intron 35.0%
! GTTGAGATTCCTTTTCCAAA+AGG + chr7_4:46628744-46628763 Msa1157600:CDS 35.0%
!! TCTTCAACTCCTTTTGGAAA+AGG - chr7_4:46628756-46628775 None:intergenic 35.0%
CTCAGCATGAATGATATAGA+TGG + chr7_4:46628987-46629006 Msa1157600:CDS 35.0%
! ATGTATGGAGTTTCAAGTAC+AGG + chr7_4:46629015-46629034 Msa1157600:CDS 35.0%
TGCATTACTACAGGTAATTC+AGG + chr7_4:46629603-46629622 Msa1157600:intron 35.0%
TATCTTCGTCGATGATTATG+AGG + chr7_4:46629684-46629703 Msa1157600:CDS 35.0%
!!! TGACTCACCACTTGATTTTT+TGG + chr7_4:46629789-46629808 Msa1157600:CDS 35.0%
!!! GACTCACCACTTGATTTTTT+GGG + chr7_4:46629790-46629809 Msa1157600:CDS 35.0%
!! CAGGTGTTGAAGATGAACTA+GGG + chr7_4:46626631-46626650 Msa1157600:CDS 40.0%
! CAACAACAAGATTAACGGGT+CGG + chr7_4:46626683-46626702 Msa1157600:CDS 40.0%
! AACAACAAGATTAACGGGTC+GGG + chr7_4:46626684-46626703 Msa1157600:CDS 40.0%
! CTGCATTTGGAACTGTTCAT+AGG + chr7_4:46626742-46626761 Msa1157600:CDS 40.0%
ATAGGAAGAAAAGGATGGCT+AGG + chr7_4:46626760-46626779 Msa1157600:CDS 40.0%
GTGTAGGTCTGAGAATACAA+CGG - chr7_4:46627327-46627346 None:intergenic 40.0%
AGGCAGAATCTATGTCTGTA+CGG + chr7_4:46627610-46627629 Msa1157600:intron 40.0%
!!! ATTATTTTGGTCATTGCCCG+TGG - chr7_4:46627652-46627671 None:intergenic 40.0%
CATGTATACGGCACTCATTT+CGG + chr7_4:46627993-46628012 Msa1157600:intron 40.0%
TCACGTGACTTTCGCAAATT+GGG - chr7_4:46628215-46628234 None:intergenic 40.0%
CTTAGTCAATGTCTAGTCCT+TGG + chr7_4:46628314-46628333 Msa1157600:intron 40.0%
TTGGTTCCCTAAATCTTTGG+TGG + chr7_4:46628356-46628375 Msa1157600:intron 40.0%
ACACCACCACCAAAGATTTA+GGG - chr7_4:46628365-46628384 None:intergenic 40.0%
AAAGAGTAACGGTGGTAAAG+AGG - chr7_4:46628497-46628516 None:intergenic 40.0%
!! GAGCATCGAGTAAAGAGTAA+CGG - chr7_4:46628508-46628527 None:intergenic 40.0%
! CACTGTTCTTCAACTCCTTT+TGG - chr7_4:46628762-46628781 None:intergenic 40.0%
ATAAGCAAAGGTCAGACCTT+AGG - chr7_4:46628814-46628833 None:intergenic 40.0%
GAATTCCTTCCTTCGATTCA+AGG - chr7_4:46628965-46628984 None:intergenic 40.0%
CTGCTATGTGCATACATTGT+TGG + chr7_4:46629039-46629058 Msa1157600:intron 40.0%
TGTACAGTCACACACTTACA+CGG + chr7_4:46629131-46629150 Msa1157600:intron 40.0%
CCTGTAGTAATGCATATGAC+AGG - chr7_4:46629597-46629616 None:intergenic 40.0%
CCTGTCATATGCATTACTAC+AGG + chr7_4:46629594-46629613 Msa1157600:intron 40.0%
AAGTGGTGAGTCATTTGAGA+TGG - chr7_4:46629782-46629801 None:intergenic 40.0%
!!! TCACCACTTGATTTTTTGGG+TGG + chr7_4:46629793-46629812 Msa1157600:CDS 40.0%
GATCCACCCAAAAAATCAAG+TGG - chr7_4:46629799-46629818 None:intergenic 40.0%
!! ATGATGATGGATGAGGGAGA+AGG + chr7_4:46626561-46626580 Msa1157600:CDS 45.0%
AGTTGTGGTTCAGAAAACCG+AGG + chr7_4:46626593-46626612 Msa1157600:CDS 45.0%
!! GCAGGTGTTGAAGATGAACT+AGG + chr7_4:46626630-46626649 Msa1157600:CDS 45.0%
CTAGGGTTTGTCAACGTGAA+AGG + chr7_4:46626648-46626667 Msa1157600:CDS 45.0%
CAACGGATCCATCATGATCA+TGG + chr7_4:46626708-46626727 Msa1157600:CDS 45.0%
GGTTTAGTTGCTGCTGCATT+TGG + chr7_4:46626729-46626748 Msa1157600:CDS 45.0%
AGAGGTGGAATTGGAGAGAT+TGG - chr7_4:46626867-46626886 None:intergenic 45.0%
GGGAGAGAATGAAAAAGAGG+TGG - chr7_4:46626882-46626901 None:intergenic 45.0%
GGAGGGAGAGAATGAAAAAG+AGG - chr7_4:46626885-46626904 None:intergenic 45.0%
CTCACGTGACTTTCGCAAAT+TGG - chr7_4:46628216-46628235 None:intergenic 45.0%
! GTAGGAGTTTTCAGCTTCCA+AGG - chr7_4:46628334-46628353 None:intergenic 45.0%
GTTCCCTAAATCTTTGGTGG+TGG + chr7_4:46628359-46628378 Msa1157600:intron 45.0%
CACACCACCACCAAAGATTT+AGG - chr7_4:46628366-46628385 None:intergenic 45.0%
!! CTAAATCTTTGGTGGTGGTG+TGG + chr7_4:46628364-46628383 Msa1157600:intron 45.0%
GCATTGTCTAGCATGCCTTA+TGG - chr7_4:46628461-46628480 None:intergenic 45.0%
AGGCATGCTAGACAATGCTT+TGG + chr7_4:46628463-46628482 Msa1157600:intron 45.0%
GGCATGCTAGACAATGCTTT+GGG + chr7_4:46628464-46628483 Msa1157600:intron 45.0%
CATCGAGTAAAGAGTAACGG+TGG - chr7_4:46628505-46628524 None:intergenic 45.0%
ACAGTGATGTTAGCTCCCTT+AGG + chr7_4:46628776-46628795 Msa1157600:CDS 45.0%
TGTTAGCTCCCTTAGGAGAA+TGG + chr7_4:46628783-46628802 Msa1157600:CDS 45.0%
AGGCAACACCATTCTCCTAA+GGG - chr7_4:46628794-46628813 None:intergenic 45.0%
TAGGCAACACCATTCTCCTA+AGG - chr7_4:46628795-46628814 None:intergenic 45.0%
!! TAGGAGAATGGTGTTGCCTA+AGG + chr7_4:46628795-46628814 Msa1157600:CDS 45.0%
! TAACTTGCAGAAAGCAGCAG+AGG + chr7_4:46628926-46628945 Msa1157600:intron 45.0%
GGAGACTTTGTTAGCACACA+TGG + chr7_4:46629427-46629446 Msa1157600:intron 45.0%
!! ACGCTTTGGAGACTCCATTA+TGG + chr7_4:46629453-46629472 Msa1157600:CDS 45.0%
!! AAATACAATAATTAAATAAA+AGG + chr7_4:46627409-46627428 Msa1157600:intron 5.0%
!! AATACAATAATTAAATAAAA+GGG + chr7_4:46627410-46627429 Msa1157600:intron 5.0%
! AGATTAACGGGTCGGGTCAA+CGG + chr7_4:46626691-46626710 Msa1157600:CDS 50.0%
AAAAACTCACACGTGCGGGA+GGG - chr7_4:46626902-46626921 None:intergenic 50.0%
AAAAAACTCACACGTGCGGG+AGG - chr7_4:46626903-46626922 None:intergenic 50.0%
TCTGTACGGAATTTGCCTCG+TGG + chr7_4:46627624-46627643 Msa1157600:intron 50.0%
GAATTTGCCTCGTGGATCCA+CGG + chr7_4:46627632-46627651 Msa1157600:intron 50.0%
AATTTGCCTCGTGGATCCAC+GGG + chr7_4:46627633-46627652 Msa1157600:intron 50.0%
CCTTCGATTCAAGGACAGGA+AGG - chr7_4:46628956-46628975 None:intergenic 50.0%
CCTTCCTGTCCTTGAATCGA+AGG + chr7_4:46628953-46628972 Msa1157600:CDS 50.0%
CCTTCCTTCGATTCAAGGAC+AGG - chr7_4:46628960-46628979 None:intergenic 50.0%
CCTGTCCTTGAATCGAAGGA+AGG + chr7_4:46628957-46628976 Msa1157600:CDS 50.0%
AGCACACATGGTCTACGCTT+TGG + chr7_4:46629439-46629458 Msa1157600:CDS 50.0%
GTTCAGAAAACCGAGGCGTG+TGG + chr7_4:46626600-46626619 Msa1157600:CDS 55.0%
AACCGAGGCGTGTGGTTTCA+TGG + chr7_4:46626608-46626627 Msa1157600:CDS 55.0%
TGCCATGAAACCACACGCCT+CGG - chr7_4:46626613-46626632 None:intergenic 55.0%
GAGGCGTGTGGTTTCATGGC+AGG + chr7_4:46626612-46626631 Msa1157600:CDS 60.0%
TGGAGAGATTGGCACGTGCG+AGG - chr7_4:46626856-46626875 None:intergenic 60.0%
TCATTGCCCGTGGATCCACG+AGG - chr7_4:46627642-46627661 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46626561 46629897 46626561 ID=Msa1157600;Name=Msa1157600
chr7_4 mRNA 46626561 46629897 46626561 ID=Msa1157600-mRNA-1;Parent=Msa1157600;Name=Msa1157600-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|315
chr7_4 exon 46626561 46626911 46626561 ID=Msa1157600-mRNA-1:exon:12231;Parent=Msa1157600-mRNA-1
chr7_4 exon 46628727 46628816 46628727 ID=Msa1157600-mRNA-1:exon:12232;Parent=Msa1157600-mRNA-1
chr7_4 exon 46628936 46629036 46628936 ID=Msa1157600-mRNA-1:exon:12233;Parent=Msa1157600-mRNA-1
chr7_4 exon 46629292 46629338 46629292 ID=Msa1157600-mRNA-1:exon:12234;Parent=Msa1157600-mRNA-1
chr7_4 exon 46629428 46629504 46629428 ID=Msa1157600-mRNA-1:exon:12235;Parent=Msa1157600-mRNA-1
chr7_4 exon 46629616 46629897 46629616 ID=Msa1157600-mRNA-1:exon:12236;Parent=Msa1157600-mRNA-1
chr7_4 CDS 46626561 46626911 46626561 ID=Msa1157600-mRNA-1:cds;Parent=Msa1157600-mRNA-1
chr7_4 CDS 46628727 46628816 46628727 ID=Msa1157600-mRNA-1:cds;Parent=Msa1157600-mRNA-1
chr7_4 CDS 46628936 46629036 46628936 ID=Msa1157600-mRNA-1:cds;Parent=Msa1157600-mRNA-1
chr7_4 CDS 46629292 46629338 46629292 ID=Msa1157600-mRNA-1:cds;Parent=Msa1157600-mRNA-1
chr7_4 CDS 46629428 46629504 46629428 ID=Msa1157600-mRNA-1:cds;Parent=Msa1157600-mRNA-1
chr7_4 CDS 46629616 46629897 46629616 ID=Msa1157600-mRNA-1:cds;Parent=Msa1157600-mRNA-1
Gene Sequence

>Msa1157600

ATGATGATGGATGAGGGAGAAGGTAAGAAGAAAGTTGTGGTTCAGAAAACCGAGGCGTGTGGTTTCATGGCAGGTGTTGAAGATGAACTAGGGTTTGTCAACGTGAAAGGAGACAACAACAACAACAACAAGATTAACGGGTCGGGTCAACGGATCCATCATGATCATGGTTTAGTTGCTGCTGCATTTGGAACTGTTCATAGGAAGAAAAGGATGGCTAGGCAAAGAAGATCTTCATCTTCAACCATCACTATTCATCTCAAAAATCTTCCTTCTTCTACTACTACTACTACCTCGCACGTGCCAATCTCTCCAATTCCACCTCTTTTTCATTCTCTCCCTCCCGCACGTGAAATCGATCATAGGAGGTTGAGATTCCTTTTCCAAAAGGAGTTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTGTTGCCTAAGAAAGCAGCAGAGGCTTTCCTTCCTGTCCTTGAATCGAAGGAAGGAATTCTTCTCAGCATGAATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGAATGTATGTACTTGAAAACACTGGAGACTTTGTTAGCACACATGGTCTACGCTTTGGAGACTCCATTATGGTTTACCAAGATAATCAAAATCACAATTATGTAATTCAGGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGAAGCTAATGATACAATCAATCATATCTTCGTCGATGATTATGAGGTGAACAAAAGTTGCTTTGATGTAGCTTATCCTGCAATGAATGATACAAGTATGTCATTTATATATGACACAACCATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACCAATTACTCAAGAATAGGATCAGTTGAAACATTTGGCTCTGTTGAGAATCTGTCTCTTGATGACTTCTATTGA
Protein sequence

>Msa1157600

MMMDEGEGKKKVVVQKTEACGFMAGVEDELGFVNVKGDNNNNNKINGSGQRIHHDHGLVAAAFGTVHRKKRMARQRRSSSSTITIHLKNLPSSTTTTTSHVPISPIPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPVLESKEGILLSMNDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQNHNYVIQAKKACDQDEYMEEANDTINHIFVDDYEVNKSCFDVAYPAMNDTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY*