AlfalfaGEDB | Msa1157700

M. sativa cultivar zhongmu-4 / Msa1157700

KEGG: K07560|K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157700	AES80711.1	72.174	460	99	3	9	468	2	432	0.0	650

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157700	G7KX87	72.174	460	99	3	9	468	2	432	0.0	650

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TFs/TRs:

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Gene ID	Type	Classification
Msa1157700	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157700	MtrunA17_Chr7g0252101	72.174	460	99	3	9	468	2	432	0.0	650
Msa1157700	MtrunA17_Chr3g0093911	66.477	352	115	3	118	468	1	350	1.93e-155	445
Msa1157700	MtrunA17_Chr1g0207351	64.489	352	117	5	123	468	17	366	1.05e-147	426
Msa1157700	MtrunA17_Chr4g0075971	50.636	472	200	10	7	468	154	602	8.78e-127	380
Msa1157700	MtrunA17_Chr6g0488101	45.625	480	208	15	15	468	3	455	2.33e-113	341
Msa1157700	MtrunA17_Chr3g0077801	53.631	358	153	8	118	468	1	352	3.01e-110	330
Msa1157700	MtrunA17_Chr6g0488271	47.392	441	187	13	47	468	1	415	3.24e-110	332
Msa1157700	MtrunA17_Chr7g0243331	51.977	354	155	8	122	468	5	350	7.52e-105	316
Msa1157700	MtrunA17_Chr1g0209051	62.132	272	99	4	198	467	1	270	7.88e-105	313
Msa1157700	MtrunA17_Chr3g0112311	53.678	367	140	12	118	466	1	355	1.30e-103	313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157700	AT5G15020.2	55.714	70	27	3	18	87	51	116	1.76e-11	67.4
Msa1157700	AT5G15020.1	55.714	70	27	3	18	87	51	116	1.80e-11	67.4
Msa1157700	AT3G01320.1	52.857	70	29	3	18	87	56	121	4.92e-11	65.9
Msa1157700	AT3G01320.2	52.857	70	29	3	18	87	56	121	5.31e-11	65.9

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Find 88 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATAAAAGATTTCA+AGG	0.352278	7_4:-46783938	Msa1157700:CDS
AAAAGTAGGAACGAACCAGT+TGG	0.641810	7_4:+46783817	None:intergenic
AAACTTGTTCCATGAGGAGC+TGG	0.519686	7_4:+46782597	None:intergenic
AACAGATAAAGCAAAAGTAA+AGG	0.535040	7_4:+46783746	None:intergenic
AACCTAAGGGACCTGGAAAG+TGG	0.565211	7_4:+46782903	None:intergenic
AATATATGTTGTCACTCATA+AGG	0.454953	7_4:-46782997	Msa1157700:CDS
AATTTACTGGAGAAATTTCT+TGG	0.269145	7_4:-46783441	Msa1157700:CDS
ACAACATGCAGTGTGTATTC+AGG	0.284588	7_4:-46782654	Msa1157700:CDS
ACACACCGGCAAACTGAAAG+TGG	0.564920	7_4:+46783489	None:intergenic
ACCAGTTGGCATGATGAGGA+AGG	0.622788	7_4:+46783831	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTGAAAGAATTGATATAAG+AGG	-	chr7_4:46782686-46782705	Msa1157700:CDS	30.0%
TTCTTGAAGTAATGGTTCTT+GGG	+	chr7_4:46783190-46783209	None:intergenic	30.0%
TGATACACTTCTTGAAGTAA+TGG	+	chr7_4:46783198-46783217	None:intergenic	30.0%
CCCATTTACAAGAAAAAAGA+AGG	-	chr7_4:46783374-46783393	Msa1157700:CDS	30.0%
CAAGCTAAGTACTCTTATAT+TGG	+	chr7_4:46783631-46783650	None:intergenic	30.0%
TAAAACACCAATCAAACTTG+AGG	+	chr7_4:46784031-46784050	None:intergenic	30.0%
GCTGAAAGAATTGATATAAG+AGG	-	chr7_4:46782686-46782705	Msa1157700:CDS	30.0%
TTCTTGAAGTAATGGTTCTT+GGG	+	chr7_4:46783190-46783209	None:intergenic	30.0%
TGATACACTTCTTGAAGTAA+TGG	+	chr7_4:46783198-46783217	None:intergenic	30.0%
CCCATTTACAAGAAAAAAGA+AGG	-	chr7_4:46783374-46783393	Msa1157700:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	46782533	46784091	46782533	ID=Msa1157700;Name=Msa1157700
chr7_4	mRNA	46782533	46784091	46782533	ID=Msa1157700-mRNA-1;Parent=Msa1157700;Name=Msa1157700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|468
chr7_4	exon	46783749	46784091	46783749	ID=Msa1157700-mRNA-1:exon:12282;Parent=Msa1157700-mRNA-1
chr7_4	exon	46782533	46783596	46782533	ID=Msa1157700-mRNA-1:exon:12281;Parent=Msa1157700-mRNA-1
chr7_4	CDS	46783749	46784091	46783749	ID=Msa1157700-mRNA-1:cds;Parent=Msa1157700-mRNA-1
chr7_4	CDS	46782533	46783596	46782533	ID=Msa1157700-mRNA-1:cds;Parent=Msa1157700-mRNA-1

Gene Sequence

>Msa1157700

TTGCTCTTTATTCTGAATATAAAGATGAACATCCCTCGAAACAATGGCCATGATGATGCACTTGAGTTTCTTCTTAAGGAAGTCAAACTTGCATGTAAGTATGATAACAAGTTAAAGTATGATGATTTTTTAAAACTCATAAAAGATTTCAAGGCTGAAAGAATTGATATAAGAGGTGTCCAAGGAAGAGTGAGGGAGCTGCTTCAAGGACATCCAGGTTTAATATTCAGATTCAACACCTTCCTCATCATGCCAACTGGTTCGTTCCTACTTTTTCCATTGCACTTCACATATCTTGATACTATATATGTTTCTACTATATGCCTTTACTTTTGCTTTATCTGGAAAACGGTGAAGAAGGTAGGAGAGAATTGTCAACTTCCTATGGATGTGCTTGATATCATTTCCGAAACACTAGATATCGATGACCACTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGTCTTTTCATAAAATTTACTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTCAAGAAGTGTATCATCCTAGTGTATCATATTCCTTTATTAGCACACCCGGCCAAAAAGTTTATTGCTCGAAGATGATGGAGTCCCTCGTACGGTGGTGCGCATATGTCACTTCTTCTAGCGGTTATTGTGTCATGGCGAATTACCACAATAATTCACTTATTCTAATAAACCCATTTACAAGAAAAAAGAAGGTAGTCAATTTCCCTACCTCTGGAAGTAACAAACTTAGAACTGACCGTGCCTTGCTTGCTTTTAGCAAATGCTCTAACGAATTTGTCTTGGTGGTTTTAATCAAACAATATTGTTTGCATGTCTATCAATCTCGATATTCTGGTTGGGTTACTTATTCGACAATGGAAAAGTCAGGGAGGGTTGTTGACTTTGTGGTTTTGCATAATATAATATATGTTGTCACTCATAAGGCCAATATAAGAGTACTTAGCTTGAATTCTGCAGATATTAGATTTCTAAATTTGAAGAGTACTCCCAATGTACCACTTTCCAGGTCCCTTAGGTTGGTTAGCTGTGATGAACAACTTTTAGTGGTTGATTTAATATGGAGTACAATATGGGAAGTGTATAAGATAGACTTCTCAACCATGAATTATGTCAAAATGAAAACTTTAGGCGACATTGCATTGCTTTATGTTGCGAGTCATTTGCCGAAAAATTGTTATGCATTGAGCAACCCGGACATGTGGGGATATGAGAGCAATTCTATGTATGTCAATGAATATTTTTTTACAACATGCAGTGTGTATTCAGGAGATGATAAACAATTACGAAAATGCATTACGCTTCCAGCTCCTCATGGAACAAGTTTCCTCAAGTTTGATTGGTGTTTTAGACATATACAATCTGAAGTAGATTATTCTCTAGTTGAATAA

Protein sequence

>Msa1157700

LLFILNIKMNIPRNNGHDDALEFLLKEVKLACKYDNKLKYDDFLKLIKDFKAERIDIRGVQGRVRELLQGHPGLIFRFNTFLIMPTGSFLLFPLHFTYLDTIYVSTICLYFCFIWKTVKKVGENCQLPMDVLDIISETLDIDDHFQFAGVCKNWRSFHKIYWRNFLASQEPLLQEVYHPSVSYSFISTPGQKVYCSKMMESLVRWCAYVTSSSGYCVMANYHNNSLILINPFTRKKKVVNFPTSGSNKLRTDRALLAFSKCSNEFVLVVLIKQYCLHVYQSRYSGWVTYSTMEKSGRVVDFVVLHNIIYVVTHKANIRVLSLNSADIRFLNLKSTPNVPLSRSLRLVSCDEQLLVVDLIWSTIWEVYKIDFSTMNYVKMKTLGDIALLYVASHLPKNCYALSNPDMWGYESNSMYVNEYFFTTCSVYSGDDKQLRKCITLPAPHGTSFLKFDWCFRHIQSEVDYSLVE*