Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157910 | AES80729.1 | 99.495 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 1.15e-143 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157910 | sp|O80438|MAK3_ARATH | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 7.08e-102 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157910 | G7KXA5 | 99.495 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 5.48e-144 | 408 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1157910 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157910 | MtrunA17_Chr7g0252251 | 99.495 | 198 | 1 | 0 | 1 | 198 | 23 | 220 | 2.93e-147 | 407 |
| Msa1157910 | MtrunA17_Chr3g0090311 | 32.117 | 137 | 90 | 3 | 43 | 176 | 23 | 159 | 8.50e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157910 | AT2G38130.2 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 7.20e-103 | 295 |
| Msa1157910 | AT2G38130.1 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 7.20e-103 | 295 |
| Msa1157910 | AT5G13780.1 | 31.746 | 126 | 83 | 3 | 43 | 165 | 23 | 148 | 6.85e-11 | 59.3 |
Find 55 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCTTCTCGTTAACGTTAG+AGG | 0.265203 | 7_4:-46952891 | Msa1157910:three_prime_UTR |
| ATGGCCGCCTTGGCTTTATT+AGG | 0.293449 | 7_4:-46953210 | Msa1157910:CDS |
| TGGCCGCCTTGGCTTTATTA+GGG | 0.308261 | 7_4:-46953209 | Msa1157910:CDS |
| GATTTCTGTTTCGTCTTTGT+TGG | 0.315027 | 7_4:+46956236 | None:intergenic |
| GGGCACGGTGGTTTGTAAAA+TGG | 0.322086 | 7_4:-46955910 | Msa1157910:CDS |
| TCTAGAGGTGCGTGCAAGTC+TGG | 0.341191 | 7_4:+46953118 | None:intergenic |
| GGCACGGTGGTTTGTAAAAT+GGG | 0.366067 | 7_4:-46955909 | Msa1157910:CDS |
| GAAGCAGAAGTCACAAATAA+AGG | 0.367029 | 7_4:-46953247 | Msa1157910:CDS |
| TGTTCCTCGTTTATGTTCTT+CGG | 0.369133 | 7_4:+46956279 | None:intergenic |
| CTTGCTCTGTATGGCCGCCT+TGG | 0.385195 | 7_4:-46953220 | Msa1157910:CDS |
| TATAAACTGATGCTATGTTA+TGG | 0.407364 | 7_4:-46952972 | Msa1157910:three_prime_UTR |
| ATCGCTACTTCGTCTATCTA+TGG | 0.412371 | 7_4:-46956092 | Msa1157910:CDS |
| ATTTCTGTTTCGTCTTTGTT+GGG | 0.419367 | 7_4:+46956237 | None:intergenic |
| CTAGACTCACCGGATAAATA+CGG | 0.441585 | 7_4:-46953100 | Msa1157910:CDS |
| TTAAAGTACATAATCATGAA+TGG | 0.452623 | 7_4:+46953025 | None:intergenic |
| CCAATGCCTCTTCCTCTGTA+GGG | 0.454470 | 7_4:+46955834 | None:intergenic |
| CGCTGAGTTCTTCGTCGACA+AGG | 0.454965 | 7_4:+46956136 | None:intergenic |
| CAGCCACAGAACTTGTTACT+AGG | 0.457121 | 7_4:-46955394 | Msa1157910:CDS |
| CGATAGGTGAAGATGGAGTA+AGG | 0.474230 | 7_4:+46956111 | None:intergenic |
| ATGTGGCTCCCGTATTTATC+CGG | 0.481987 | 7_4:+46953091 | None:intergenic |
| AAAGGAGCACTTGCTCTGTA+TGG | 0.485924 | 7_4:-46953229 | Msa1157910:CDS |
| ATCAAAGTGATGATGGAATC+TGG | 0.488662 | 7_4:-46955368 | Msa1157910:CDS |
| CCCTACAGAGGAAGAGGCAT+TGG | 0.495396 | 7_4:-46955834 | Msa1157910:intron |
| TAGGTCTATCAAAGTGATGA+TGG | 0.496415 | 7_4:-46955375 | Msa1157910:CDS |
| GAAGTAGCGATAGGTGAAGA+TGG | 0.509096 | 7_4:+46956104 | None:intergenic |
| ACCAATGCCTCTTCCTCTGT+AGG | 0.521245 | 7_4:+46955833 | None:intergenic |
| CGAGGAACAAGAAGAAGACA+TGG | 0.521960 | 7_4:-46956265 | Msa1157910:exon |
| ATCAAACCCTACAGAGGAAG+AGG | 0.528144 | 7_4:-46955840 | Msa1157910:CDS |
| TTTCATAAGGGTAAATGTGT+GGG | 0.560965 | 7_4:-46955930 | Msa1157910:CDS |
| CAAGGTTCATGATGAGAGGT+AGG | 0.571066 | 7_4:+46956154 | None:intergenic |
| TATACATTAACAGGTTACAT+TGG | 0.574035 | 7_4:-46953269 | Msa1157910:intron |
| GTAGCTGATGTATTCAATCT+CGG | 0.580445 | 7_4:+46956191 | None:intergenic |
| TAGACTCACCGGATAAATAC+GGG | 0.590980 | 7_4:-46953099 | Msa1157910:CDS |
| GCACGCACCTCTAGACTCAC+CGG | 0.601943 | 7_4:-46953110 | Msa1157910:CDS |
| TAAGGGTAAATGTGTGGGCA+CGG | 0.602307 | 7_4:-46955925 | Msa1157910:CDS |
| CGCCACGATCACTATGCATG+TGG | 0.608007 | 7_4:+46953074 | None:intergenic |
| GAGATTGAATACATCAGCTA+CGG | 0.624186 | 7_4:-46956189 | Msa1157910:CDS |
| TATTTATCCGGTGAGTCTAG+AGG | 0.626348 | 7_4:+46953103 | None:intergenic |
| GGTGCGTGCAAGTCTGGACG+AGG | 0.630380 | 7_4:+46953124 | None:intergenic |
| GAGGAAATAAAAGTTTAAGA+CGG | 0.630576 | 7_4:+46953143 | None:intergenic |
| GCTTAGCCCTAATAAAGCCA+AGG | 0.631068 | 7_4:+46953203 | None:intergenic |
| TAGATAGACGAAGTAGCGAT+AGG | 0.633007 | 7_4:+46956095 | None:intergenic |
| AGCCACATGCATAGTGATCG+TGG | 0.635530 | 7_4:-46953076 | Msa1157910:CDS |
| TCGACAAGGTTCATGATGAG+AGG | 0.638163 | 7_4:+46956150 | None:intergenic |
| CACGGTGGTTTGTAAAATGG+GGG | 0.647644 | 7_4:-46955907 | Msa1157910:CDS |
| GTTGTTATCAAACCCTACAG+AGG | 0.653909 | 7_4:-46955846 | Msa1157910:CDS |
| GCACGGTGGTTTGTAAAATG+GGG | 0.655026 | 7_4:-46955908 | Msa1157910:CDS |
| ATTGAATACATCAGCTACGG+CGG | 0.665233 | 7_4:-46956186 | Msa1157910:CDS |
| AGACCTAGTAACAAGTTCTG+TGG | 0.674745 | 7_4:+46955391 | None:intergenic |
| GGTACCAGAAAAGAAAGATG+AGG | 0.680873 | 7_4:+46956069 | None:intergenic |
| GGGTAAATGTGTGGGCACGG+TGG | 0.700892 | 7_4:-46955922 | Msa1157910:CDS |
| TTGGCTTTATTAGGGCTAAG+CGG | 0.719008 | 7_4:-46953201 | Msa1157910:CDS |
| AAAACCGAAGAACATAAACG+AGG | 0.729840 | 7_4:-46956283 | Msa1157910:five_prime_UTR |
| GATGGAATCTGGTTGTGACG+AGG | 0.743372 | 7_4:-46955357 | Msa1157910:intron |
| TAGCCCTAATAAAGCCAAGG+CGG | 0.755354 | 7_4:+46953206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTTTTTATTTTCATT+TGG | - | chr7_4:46953405-46953424 | Msa1157910:intron | 10.0% |
| !! | AATATTCAACATTATAAAAT+AGG | + | chr7_4:46955809-46955828 | None:intergenic | 10.0% |
| !! | TAATAAATCAAAGTGATTAA+CGG | + | chr7_4:46953186-46953205 | None:intergenic | 15.0% |
| !!! | TTTATTTTCATTTGGTATAA+TGG | - | chr7_4:46953413-46953432 | Msa1157910:intron | 15.0% |
| !!! | TTATTTTCATTTGGTATAAT+GGG | - | chr7_4:46953414-46953433 | Msa1157910:intron | 15.0% |
| !!! | AACAAATTATTTTCACATTT+AGG | - | chr7_4:46954339-46954358 | Msa1157910:intron | 15.0% |
| !!! | TTTTTTTTATACTTATTAGC+TGG | - | chr7_4:46954378-46954397 | Msa1157910:intron | 15.0% |
| !!! | TTTTTTTATACTTATTAGCT+GGG | - | chr7_4:46954379-46954398 | Msa1157910:intron | 15.0% |
| !!! | AATGATTTTTTTTGCAAAAT+GGG | + | chr7_4:46955204-46955223 | None:intergenic | 15.0% |
| !!! | TAAATTGTGTTTAGATTTTT+TGG | - | chr7_4:46955843-46955862 | Msa1157910:CDS | 15.0% |
| !!! | TTTTCACCTTTTTATTATCT+GGG | - | chr7_4:46953145-46953164 | Msa1157910:CDS | 20.0% |
| !!! | TTCTTTCTTTGTTTTGTTTT+AGG | - | chr7_4:46953224-46953243 | Msa1157910:CDS | 20.0% |
| !! | GTATATTTGGATTGTATTAT+TGG | - | chr7_4:46953436-46953455 | Msa1157910:intron | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | - | chr7_4:46953677-46953696 | Msa1157910:intron | 20.0% |
| !! | TCAAACAACACTATAATATT+TGG | - | chr7_4:46954229-46954248 | Msa1157910:intron | 20.0% |
| !!! | TTTTTTATACTTATTAGCTG+GGG | - | chr7_4:46954380-46954399 | Msa1157910:intron | 20.0% |
| !! | AAATATTATAGTCTCACATT+TGG | + | chr7_4:46954729-46954748 | None:intergenic | 20.0% |
| !! | GAAAATGTTATTAAGATAAG+TGG | + | chr7_4:46954820-46954839 | None:intergenic | 20.0% |
| !!! | AGTGTAATTTTTCATTGAAA+AGG | + | chr7_4:46954930-46954949 | None:intergenic | 20.0% |
| !!! | CAATGATTTTTTTTGCAAAA+TGG | + | chr7_4:46955205-46955224 | None:intergenic | 20.0% |
| !!! | TTTTGCAAAAAAAATCATTG+CGG | - | chr7_4:46955205-46955224 | Msa1157910:intron | 20.0% |
| !! | ACAATTAAAGTTCAAATGTT+TGG | - | chr7_4:46955287-46955306 | Msa1157910:intron | 20.0% |
| !! | ACAATTAAAGTTCAAATGTT+TGG | - | chr7_4:46955287-46955306 | Msa1157910:intron | 20.0% |
| !! | CAATTAAAGTTCAAATGTTT+GGG | - | chr7_4:46955288-46955307 | Msa1157910:intron | 20.0% |
| !!! | CATAACAAGTTTAAAATCAA+CGG | + | chr7_4:46955609-46955628 | None:intergenic | 20.0% |
| !! | TTGAATATTTACTAGACATA+TGG | - | chr7_4:46955820-46955839 | Msa1157910:intron | 20.0% |
| !! | TTAAAGTACATAATCATGAA+TGG | + | chr7_4:46956157-46956176 | None:intergenic | 20.0% |
| !!! | TCGGTTTTTTTGTAAAACAA+TGG | + | chr7_4:46952884-46952903 | None:intergenic | 25.0% |
| !! | CTTTTCACCTTTTTATTATC+TGG | - | chr7_4:46953144-46953163 | Msa1157910:CDS | 25.0% |
| ! | AAATGACCCAGATAATAAAA+AGG | + | chr7_4:46953154-46953173 | None:intergenic | 25.0% |
| !!! | TTTGTTTTAGGCTTTTCATA+AGG | - | chr7_4:46953236-46953255 | Msa1157910:CDS | 25.0% |
| !!! | TTGTTTTAGGCTTTTCATAA+GGG | - | chr7_4:46953237-46953256 | Msa1157910:CDS | 25.0% |
| !!! | TTTGGTATAATGGGTATATT+TGG | - | chr7_4:46953423-46953442 | Msa1157910:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr7_4:46953517-46953536 | None:intergenic | 25.0% |
| ! | AAAAGAACTTATACTGACAT+AGG | - | chr7_4:46953617-46953636 | Msa1157910:intron | 25.0% |
| ! | AACTCTTTATAATCACGTAT+AGG | + | chr7_4:46953703-46953722 | None:intergenic | 25.0% |
| ! | AAAAAACAAGCAAAAGCTAA+AGG | + | chr7_4:46953761-46953780 | None:intergenic | 25.0% |
| ! | AATCATAAGCGCTTATTTAT+AGG | - | chr7_4:46953883-46953902 | Msa1157910:intron | 25.0% |
| ! | ATCATAAGCGCTTATTTATA+GGG | - | chr7_4:46953884-46953903 | Msa1157910:intron | 25.0% |
| ! | TAGCACTTAAATAAGGTAAA+CGG | + | chr7_4:46954128-46954147 | None:intergenic | 25.0% |
| ! | AAATAGTCTATTATTAGACG+CGG | + | chr7_4:46954569-46954588 | None:intergenic | 25.0% |
| ! | AAGGATAATCAAATAGTTAG+AGG | + | chr7_4:46954639-46954658 | None:intergenic | 25.0% |
| ! | TGTTGTATAGATTGTATACA+GGG | + | chr7_4:46954886-46954905 | None:intergenic | 25.0% |
| ! | ATGTTGTATAGATTGTATAC+AGG | + | chr7_4:46954887-46954906 | None:intergenic | 25.0% |
| ! | TTCATCATTGTTCAACTTAT+TGG | - | chr7_4:46955741-46955760 | Msa1157910:intron | 25.0% |
| ! | AAATACTTCAATTATGTTGG+TGG | - | chr7_4:46955772-46955791 | Msa1157910:intron | 25.0% |
| ! | GTTCAAAGTTAAACACTTAT+AGG | - | chr7_4:46955871-46955890 | Msa1157910:CDS | 25.0% |
| !! | CTTCTTGTTTATACATTAAC+AGG | - | chr7_4:46955901-46955920 | Msa1157910:CDS | 25.0% |
| ! | TATACATTAACAGGTTACAT+TGG | - | chr7_4:46955910-46955929 | Msa1157910:CDS | 25.0% |
| !!! | CTTTTTCACTACTATTTGAA+TGG | - | chr7_4:46956001-46956020 | Msa1157910:intron | 25.0% |
| ! | GAGGAAATAAAAGTTTAAGA+CGG | + | chr7_4:46956039-46956058 | None:intergenic | 25.0% |
| ! | TATAAACTGATGCTATGTTA+TGG | - | chr7_4:46956207-46956226 | Msa1157910:CDS | 25.0% |
| ! | GGTTGAAAAAAAATCAGAAA+TGG | - | chr7_4:46956309-46956328 | Msa1157910:five_prime_UTR | 25.0% |
| !! | AACAATGGCAAATTGCTTTT+AGG | + | chr7_4:46952869-46952888 | None:intergenic | 30.0% |
| ATTTCTGTTTCGTCTTTGTT+GGG | + | chr7_4:46952945-46952964 | None:intergenic | 30.0% | |
| AGGTGAAAAGATGAAAGATT+TGG | + | chr7_4:46953134-46953153 | None:intergenic | 30.0% | |
| ! | TTTTCATAAGGGTAAATGTG+TGG | - | chr7_4:46953248-46953267 | Msa1157910:CDS | 30.0% |
| TTTCATAAGGGTAAATGTGT+GGG | - | chr7_4:46953249-46953268 | Msa1157910:CDS | 30.0% | |
| AGACTGTCTATTAAAGCTTA+TGG | - | chr7_4:46953473-46953492 | Msa1157910:intron | 30.0% | |
| TGTCTATTAAAGCTTATGGA+AGG | - | chr7_4:46953477-46953496 | Msa1157910:intron | 30.0% | |
| !!! | GTAGAGAAAGCTTTTAGTTT+TGG | - | chr7_4:46954089-46954108 | Msa1157910:intron | 30.0% |
| !!! | AAAGCTTTTAGTTTTGGTGT+TGG | - | chr7_4:46954095-46954114 | Msa1157910:intron | 30.0% |
| TTTATTCGTACAAACTGACA+TGG | + | chr7_4:46954163-46954182 | None:intergenic | 30.0% | |
| TTAAATTGTATGTTTCCCCT+AGG | - | chr7_4:46954404-46954423 | Msa1157910:intron | 30.0% | |
| ATAGATAAGACGAAGGAATA+AGG | + | chr7_4:46954658-46954677 | None:intergenic | 30.0% | |
| AACAAAGATAGATAAGACGA+AGG | + | chr7_4:46954665-46954684 | None:intergenic | 30.0% | |
| ! | GTCTTATCTATCTTTGTTGT+TGG | - | chr7_4:46954667-46954686 | Msa1157910:intron | 30.0% |
| ! | TCTATTACAAGTTGACTTTC+CGG | - | chr7_4:46954846-46954865 | Msa1157910:intron | 30.0% |
| !! | TTACACTTAAAGCATTGTTC+CGG | - | chr7_4:46954943-46954962 | Msa1157910:intron | 30.0% |
| CCTATCAAACAAAATAACAG+GGG | + | chr7_4:46955012-46955031 | None:intergenic | 30.0% | |
| GCCTATCAAACAAAATAACA+GGG | + | chr7_4:46955013-46955032 | None:intergenic | 30.0% | |
| TACTACATCTCTTAGTAAAC+TGG | - | chr7_4:46955100-46955119 | Msa1157910:intron | 30.0% | |
| ! | AAACCAAAGTGAAACTCTTT+TGG | + | chr7_4:46955260-46955279 | None:intergenic | 30.0% |
| AGTCATCGTATGAAAACATA+GGG | + | chr7_4:46955378-46955397 | None:intergenic | 30.0% | |
| CAAAAATGCTTGTGTAAACT+CGG | - | chr7_4:46955414-46955433 | Msa1157910:intron | 30.0% | |
| AAAAATGCTTGTGTAAACTC+GGG | - | chr7_4:46955415-46955434 | Msa1157910:intron | 30.0% | |
| CACAAAAAATCTTTGCAATG+AGG | - | chr7_4:46955446-46955465 | Msa1157910:intron | 30.0% | |
| CAAAACTACTACAGATTGAA+GGG | + | chr7_4:46955563-46955582 | None:intergenic | 30.0% | |
| TCAAAACTACTACAGATTGA+AGG | + | chr7_4:46955564-46955583 | None:intergenic | 30.0% | |
| GCGAAATACTTCAATTATGT+TGG | - | chr7_4:46955769-46955788 | Msa1157910:intron | 30.0% | |
| !!! | ATCACTGTTTTTGTCTAGTA+TGG | - | chr7_4:46956235-46956254 | Msa1157910:CDS | 30.0% |
| AAAACCGAAGAACATAAACG+AGG | - | chr7_4:46952896-46952915 | Msa1157910:three_prime_UTR | 35.0% | |
| TGTTCCTCGTTTATGTTCTT+CGG | + | chr7_4:46952903-46952922 | None:intergenic | 35.0% | |
| GATTTCTGTTTCGTCTTTGT+TGG | + | chr7_4:46952946-46952965 | None:intergenic | 35.0% | |
| GTAGCTGATGTATTCAATCT+CGG | + | chr7_4:46952991-46953010 | None:intergenic | 35.0% | |
| GAGATTGAATACATCAGCTA+CGG | - | chr7_4:46952990-46953009 | Msa1157910:three_prime_UTR | 35.0% | |
| TAGGTCTATCAAAGTGATGA+TGG | - | chr7_4:46953804-46953823 | Msa1157910:intron | 35.0% | |
| !! | ATCAAAGTGATGATGGAATC+TGG | - | chr7_4:46953811-46953830 | Msa1157910:intron | 35.0% |
| !!! | CTTTTAGTTTTGGTGTTGGT+TGG | - | chr7_4:46954099-46954118 | Msa1157910:intron | 35.0% |
| TGGAAGCTAGCACTTAAATA+AGG | + | chr7_4:46954135-46954154 | None:intergenic | 35.0% | |
| TACAAACTGACATGGAACTA+TGG | + | chr7_4:46954155-46954174 | None:intergenic | 35.0% | |
| GCAAACCAAAATCTCAGAAA+CGG | - | chr7_4:46954426-46954445 | Msa1157910:intron | 35.0% | |
| CAAACCAAAATCTCAGAAAC+GGG | - | chr7_4:46954427-46954446 | Msa1157910:intron | 35.0% | |
| !!! | ATTGAGAGTATTTTTCCACC+AGG | - | chr7_4:46954486-46954505 | Msa1157910:intron | 35.0% |
| AAATAGTTAGAGGTAGAGAG+AGG | + | chr7_4:46954629-46954648 | None:intergenic | 35.0% | |
| !! | TTTGTTGTTGGTGTTTCTGT+GGG | - | chr7_4:46954679-46954698 | Msa1157910:intron | 35.0% |
| AGAGTCAACGAGATACTAAT+GGG | + | chr7_4:46954754-46954773 | None:intergenic | 35.0% | |
| ACATTGCATATAACCTTGAG+TGG | - | chr7_4:46954903-46954922 | Msa1157910:intron | 35.0% | |
| !!! | CCCCTGTTATTTTGTTTGAT+AGG | - | chr7_4:46955009-46955028 | Msa1157910:intron | 35.0% |
| CGCCTATCAAACAAAATAAC+AGG | + | chr7_4:46955014-46955033 | None:intergenic | 35.0% | |
| !! | TATTTTGTTTGATAGGCGCA+AGG | - | chr7_4:46955016-46955035 | Msa1157910:intron | 35.0% |
| !!! | ACTGGCTTTTCATATAGTAC+TGG | - | chr7_4:46955118-46955137 | Msa1157910:intron | 35.0% |
| AAAATCATTGCGGAACCAAT+TGG | - | chr7_4:46955215-46955234 | Msa1157910:intron | 35.0% | |
| GATTATTGAGCAGATCCAAT+TGG | + | chr7_4:46955233-46955252 | None:intergenic | 35.0% | |
| CTTCCAAAAGAGTTTCACTT+TGG | - | chr7_4:46955254-46955273 | Msa1157910:intron | 35.0% | |
| CAGTCATCGTATGAAAACAT+AGG | + | chr7_4:46955379-46955398 | None:intergenic | 35.0% | |
| TGCATCAACTTATCAGAGTT+GGG | + | chr7_4:46955489-46955508 | None:intergenic | 35.0% | |
| ATGCATCAACTTATCAGAGT+TGG | + | chr7_4:46955490-46955509 | None:intergenic | 35.0% | |
| TGAAGCTAGATTAAGCTTTG+TGG | + | chr7_4:46955517-46955536 | None:intergenic | 35.0% | |
| TACCATCACAACTCAATTGA+CGG | + | chr7_4:46955683-46955702 | None:intergenic | 35.0% | |
| ! | TTGAGTTGTGATGGTATGTT+TGG | - | chr7_4:46955687-46955706 | Msa1157910:intron | 35.0% |
| TGAGTTGTGATGGTATGTTT+GGG | - | chr7_4:46955688-46955707 | Msa1157910:intron | 35.0% | |
| GAAGCAGAAGTCACAAATAA+AGG | - | chr7_4:46955932-46955951 | Msa1157910:CDS | 35.0% | |
| !!! | CTGTTTTTGTCTAGTATGGT+AGG | - | chr7_4:46956239-46956258 | Msa1157910:CDS | 35.0% |
| ATTGAATACATCAGCTACGG+CGG | - | chr7_4:46952993-46953012 | Msa1157910:three_prime_UTR | 40.0% | |
| TAGATAGACGAAGTAGCGAT+AGG | + | chr7_4:46953087-46953106 | None:intergenic | 40.0% | |
| ATCGCTACTTCGTCTATCTA+TGG | - | chr7_4:46953087-46953106 | Msa1157910:CDS | 40.0% | |
| ! | ATGGCCTCATCTTTCTTTTC+TGG | - | chr7_4:46953106-46953125 | Msa1157910:CDS | 40.0% |
| GGTACCAGAAAAGAAAGATG+AGG | + | chr7_4:46953113-46953132 | None:intergenic | 40.0% | |
| ! | GAACATCGTAGCACTTTTAG+AGG | - | chr7_4:46953294-46953313 | Msa1157910:intron | 40.0% |
| GTTGTTATCAAACCCTACAG+AGG | - | chr7_4:46953333-46953352 | Msa1157910:intron | 40.0% | |
| AGACCTAGTAACAAGTTCTG+TGG | + | chr7_4:46953791-46953810 | None:intergenic | 40.0% | |
| AGTTGTATCCCAATGTCATG+TGG | - | chr7_4:46954057-46954076 | Msa1157910:intron | 40.0% | |
| TACCTAGACCACATGACATT+GGG | + | chr7_4:46954068-46954087 | None:intergenic | 40.0% | |
| ATACCTAGACCACATGACAT+TGG | + | chr7_4:46954069-46954088 | None:intergenic | 40.0% | |
| !!! | AGTGAGAGTATTTTTCCACC+AGG | - | chr7_4:46954189-46954208 | Msa1157910:intron | 40.0% |
| !! | AGAGTATTTTTCCACCAGGT+GGG | - | chr7_4:46954193-46954212 | Msa1157910:intron | 40.0% |
| !!! | TGAGATTTTGGTTTGCCTAG+GGG | + | chr7_4:46954422-46954441 | None:intergenic | 40.0% |
| !!! | CTGAGATTTTGGTTTGCCTA+GGG | + | chr7_4:46954423-46954442 | None:intergenic | 40.0% |
| !!! | TCTGAGATTTTGGTTTGCCT+AGG | + | chr7_4:46954424-46954443 | None:intergenic | 40.0% |
| GTACAAACTGACATTGAAGC+AGG | + | chr7_4:46954453-46954472 | None:intergenic | 40.0% | |
| !! | AGAGTATTTTTCCACCAGGT+GGG | - | chr7_4:46954193-46954212 | Msa1157910:intron | 40.0% |
| TATTAGACGCGGTTCAAGAT+GGG | + | chr7_4:46954558-46954577 | None:intergenic | 40.0% | |
| TTATTAGACGCGGTTCAAGA+TGG | + | chr7_4:46954559-46954578 | None:intergenic | 40.0% | |
| GGAACACTGCATGTTTGAAA+AGG | + | chr7_4:46954602-46954621 | None:intergenic | 40.0% | |
| !! | CTTTGTTGTTGGTGTTTCTG+TGG | - | chr7_4:46954678-46954697 | Msa1157910:intron | 40.0% |
| GAGAGTCAACGAGATACTAA+TGG | + | chr7_4:46954755-46954774 | None:intergenic | 40.0% | |
| AGACAAGATAGGATCAAGGA+CGG | + | chr7_4:46954790-46954809 | None:intergenic | 40.0% | |
| CACAAGACAAGATAGGATCA+AGG | + | chr7_4:46954794-46954813 | None:intergenic | 40.0% | |
| TCATTGAAAAGGACCACTCA+AGG | + | chr7_4:46954919-46954938 | None:intergenic | 40.0% | |
| GATTCATGCAGGTGATAAAC+CGG | + | chr7_4:46954965-46954984 | None:intergenic | 40.0% | |
| TTATCACCTGCATGAATCCT+AGG | - | chr7_4:46954967-46954986 | Msa1157910:intron | 40.0% | |
| TATCACCTGCATGAATCCTA+GGG | - | chr7_4:46954968-46954987 | Msa1157910:intron | 40.0% | |
| TAAAGAGTGATGCAAACCCT+AGG | + | chr7_4:46954987-46955006 | None:intergenic | 40.0% | |
| CTTCCAAAGTTTGTCTCTGT+AGG | - | chr7_4:46955170-46955189 | Msa1157910:intron | 40.0% | |
| AGACCTACAGAGACAAACTT+TGG | + | chr7_4:46955176-46955195 | None:intergenic | 40.0% | |
| TCTTTGCAATGAGGTCAATG+AGG | - | chr7_4:46955455-46955474 | Msa1157910:intron | 40.0% | |
| ! | AGCTTAATCTAGCTTCAACG+AGG | - | chr7_4:46955520-46955539 | Msa1157910:intron | 40.0% |
| ! | GCTTAATCTAGCTTCAACGA+GGG | - | chr7_4:46955521-46955540 | Msa1157910:intron | 40.0% |
| ! | CTTAATCTAGCTTCAACGAG+GGG | - | chr7_4:46955522-46955541 | Msa1157910:intron | 40.0% |
| ACTACAGATTGAAGGGTAGT+GGG | + | chr7_4:46955556-46955575 | None:intergenic | 40.0% | |
| TACTACAGATTGAAGGGTAG+TGG | + | chr7_4:46955557-46955576 | None:intergenic | 40.0% | |
| GGTATGTTTGGGTACTAGTT+TGG | - | chr7_4:46955699-46955718 | Msa1157910:intron | 40.0% | |
| ! | GGTACTAGTTTGGTTTAGTC+TGG | - | chr7_4:46955709-46955728 | Msa1157910:intron | 40.0% |
| !! | TTGGCTTTATTAGGGCTAAG+CGG | - | chr7_4:46955978-46955997 | Msa1157910:intron | 40.0% |
| TATTTATCCGGTGAGTCTAG+AGG | + | chr7_4:46956079-46956098 | None:intergenic | 40.0% | |
| CTAGACTCACCGGATAAATA+CGG | - | chr7_4:46956079-46956098 | Msa1157910:CDS | 40.0% | |
| TAGACTCACCGGATAAATAC+GGG | - | chr7_4:46956080-46956099 | Msa1157910:CDS | 40.0% | |
| CGAGGAACAAGAAGAAGACA+TGG | - | chr7_4:46952914-46952933 | Msa1157910:three_prime_UTR | 45.0% | |
| CAAGGTTCATGATGAGAGGT+AGG | + | chr7_4:46953028-46953047 | None:intergenic | 45.0% | |
| TCGACAAGGTTCATGATGAG+AGG | + | chr7_4:46953032-46953051 | None:intergenic | 45.0% | |
| CGATAGGTGAAGATGGAGTA+AGG | + | chr7_4:46953071-46953090 | None:intergenic | 45.0% | |
| GAAGTAGCGATAGGTGAAGA+TGG | + | chr7_4:46953078-46953097 | None:intergenic | 45.0% | |
| TAAGGGTAAATGTGTGGGCA+CGG | - | chr7_4:46953254-46953273 | Msa1157910:CDS | 45.0% | |
| ! | GGCACGGTGGTTTGTAAAAT+GGG | - | chr7_4:46953270-46953289 | Msa1157910:intron | 45.0% |
| ! | GCACGGTGGTTTGTAAAATG+GGG | - | chr7_4:46953271-46953290 | Msa1157910:intron | 45.0% |
| ! | CACGGTGGTTTGTAAAATGG+GGG | - | chr7_4:46953272-46953291 | Msa1157910:intron | 45.0% |
| ATCAAACCCTACAGAGGAAG+AGG | - | chr7_4:46953339-46953358 | Msa1157910:intron | 45.0% | |
| !! | CAGCCACAGAACTTGTTACT+AGG | - | chr7_4:46953785-46953804 | Msa1157910:intron | 45.0% |
| ATCCCAATGTCATGTGGTCT+AGG | - | chr7_4:46954063-46954082 | Msa1157910:intron | 45.0% | |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | - | chr7_4:46954192-46954211 | Msa1157910:intron | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | - | chr7_4:46954194-46954213 | Msa1157910:intron | 45.0% |
| ATCTCATAACTAACCCCACC+TGG | + | chr7_4:46954210-46954229 | None:intergenic | 45.0% | |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | - | chr7_4:46954192-46954211 | Msa1157910:intron | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | - | chr7_4:46954194-46954213 | Msa1157910:intron | 45.0% |
| ATCTCATAACTAACCCCACC+TGG | + | chr7_4:46954210-46954229 | None:intergenic | 45.0% | |
| TTAGAGGTAGAGAGAGGTCA+AGG | + | chr7_4:46954623-46954642 | None:intergenic | 45.0% | |
| GTGGTCACACAAGACAAGAT+AGG | + | chr7_4:46954801-46954820 | None:intergenic | 45.0% | |
| ! | TACAAGTTGACTTTCCGGTC+AGG | - | chr7_4:46954851-46954870 | Msa1157910:intron | 45.0% |
| !! | GATTGAAGGGTAGTGGGATT+GGG | + | chr7_4:46955550-46955569 | None:intergenic | 45.0% |
| !! | AGATTGAAGGGTAGTGGGAT+TGG | + | chr7_4:46955551-46955570 | None:intergenic | 45.0% |
| ! | GACCGTCAATTGAGTTGTGA+TGG | - | chr7_4:46955678-46955697 | Msa1157910:intron | 45.0% |
| !! | AAAGGAGCACTTGCTCTGTA+TGG | - | chr7_4:46955950-46955969 | Msa1157910:intron | 45.0% |
| TAGCCCTAATAAAGCCAAGG+CGG | + | chr7_4:46955976-46955995 | None:intergenic | 45.0% | |
| GCTTAGCCCTAATAAAGCCA+AGG | + | chr7_4:46955979-46955998 | None:intergenic | 45.0% | |
| ATGTGGCTCCCGTATTTATC+CGG | + | chr7_4:46956091-46956110 | None:intergenic | 45.0% | |
| TCGCTTCTCGTTAACGTTAG+AGG | - | chr7_4:46956288-46956307 | Msa1157910:five_prime_UTR | 45.0% | |
| ! | GGGCACGGTGGTTTGTAAAA+TGG | - | chr7_4:46953269-46953288 | Msa1157910:intron | 50.0% |
| CCAATGCCTCTTCCTCTGTA+GGG | + | chr7_4:46953348-46953367 | None:intergenic | 50.0% | |
| ACCAATGCCTCTTCCTCTGT+AGG | + | chr7_4:46953349-46953368 | None:intergenic | 50.0% | |
| GATGGAATCTGGTTGTGACG+AGG | - | chr7_4:46953822-46953841 | Msa1157910:intron | 50.0% | |
| TCATAACTAACCCCACCTGG+TGG | + | chr7_4:46954207-46954226 | None:intergenic | 50.0% | |
| !!! | CAGGCCCGTTTCTGAGATTT+TGG | + | chr7_4:46954434-46954453 | None:intergenic | 50.0% |
| TCATAACTAACCCCACCTGG+TGG | + | chr7_4:46954207-46954226 | None:intergenic | 50.0% | |
| GCAAACCCTAGGATTCATGC+AGG | + | chr7_4:46954976-46954995 | None:intergenic | 50.0% | |
| !! | ATGGCCGCCTTGGCTTTATT+AGG | - | chr7_4:46955969-46955988 | Msa1157910:intron | 50.0% |
| !! | TGGCCGCCTTGGCTTTATTA+GGG | - | chr7_4:46955970-46955989 | Msa1157910:intron | 50.0% |
| AGCCACATGCATAGTGATCG+TGG | - | chr7_4:46956103-46956122 | Msa1157910:CDS | 50.0% | |
| CGCTGAGTTCTTCGTCGACA+AGG | + | chr7_4:46953046-46953065 | None:intergenic | 55.0% | |
| ! | CCCTACAGAGGAAGAGGCAT+TGG | - | chr7_4:46953345-46953364 | Msa1157910:intron | 55.0% |
| CAGGGCAGAAAAAGCCTGAC+CGG | + | chr7_4:46954868-46954887 | None:intergenic | 55.0% | |
| ! | TCTAGAGGTGCGTGCAAGTC+TGG | + | chr7_4:46956064-46956083 | None:intergenic | 55.0% |
| CGCCACGATCACTATGCATG+TGG | + | chr7_4:46956108-46956127 | None:intergenic | 55.0% | |
| GGGTAAATGTGTGGGCACGG+TGG | - | chr7_4:46953257-46953276 | Msa1157910:CDS | 60.0% | |
| CTTGCTCTGTATGGCCGCCT+TGG | - | chr7_4:46955959-46955978 | Msa1157910:intron | 60.0% | |
| GCACGCACCTCTAGACTCAC+CGG | - | chr7_4:46956069-46956088 | Msa1157910:intron | 60.0% | |
| GGTGCGTGCAAGTCTGGACG+AGG | + | chr7_4:46956058-46956077 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 46952856 | 46956345 | 46952856 | ID=Msa1157910;Name=Msa1157910 |
| chr7_4 | mRNA | 46952856 | 46956345 | 46952856 | ID=Msa1157910-mRNA-1;Parent=Msa1157910;Name=Msa1157910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|1|1|4|198|198 |
| chr7_4 | exon | 46952856 | 46953278 | 46952856 | ID=Msa1157910-mRNA-1:exon:12451;Parent=Msa1157910-mRNA-1 |
| chr7_4 | exon | 46955358 | 46955413 | 46955358 | ID=Msa1157910-mRNA-1:exon:12450;Parent=Msa1157910-mRNA-1 |
| chr7_4 | exon | 46955835 | 46955955 | 46955835 | ID=Msa1157910-mRNA-1:exon:12449;Parent=Msa1157910-mRNA-1 |
| chr7_4 | exon | 46956074 | 46956345 | 46956074 | ID=Msa1157910-mRNA-1:exon:12448;Parent=Msa1157910-mRNA-1 |
| chr7_4 | five_prime_UTR | 46956269 | 46956345 | 46956269 | ID=Msa1157910-mRNA-1:five_prime_utr;Parent=Msa1157910-mRNA-1 |
| chr7_4 | CDS | 46956074 | 46956268 | 46956074 | ID=Msa1157910-mRNA-1:cds;Parent=Msa1157910-mRNA-1 |
| chr7_4 | CDS | 46955835 | 46955955 | 46955835 | ID=Msa1157910-mRNA-1:cds;Parent=Msa1157910-mRNA-1 |
| chr7_4 | CDS | 46955358 | 46955413 | 46955358 | ID=Msa1157910-mRNA-1:cds;Parent=Msa1157910-mRNA-1 |
| chr7_4 | CDS | 46953054 | 46953278 | 46953054 | ID=Msa1157910-mRNA-1:cds;Parent=Msa1157910-mRNA-1 |
| chr7_4 | three_prime_UTR | 46952856 | 46953053 | 46952856 | ID=Msa1157910-mRNA-1:three_prime_utr;Parent=Msa1157910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
