AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1159220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159220 MtrunA17_Chr7g0254161 95.540 426 17 1 1 426 1 424 0.0 843
Msa1159220 MtrunA17_Chr6g0460731 50.133 375 140 9 8 351 10 368 2.69e-107 321
Msa1159220 MtrunA17_Chr6g0460721 46.939 343 143 9 8 335 10 328 2.13e-93 284
Msa1159220 MtrunA17_Chr6g0453321 35.400 500 221 18 3 425 1 475 2.54e-64 214
Msa1159220 MtrunA17_Chr4g0042481 33.333 495 225 19 3 424 1 463 2.64e-55 189
Msa1159220 MtrunA17_Chr7g0217581 34.967 449 201 15 38 425 164 582 1.97e-54 190
Msa1159220 MtrunA17_Chr8g0355261 32.203 472 230 14 5 426 8 439 4.36e-52 181
Msa1159220 MtrunA17_Chr3g0092111 35.976 328 164 7 85 392 118 419 4.70e-49 173
Msa1159220 MtrunA17_Chr2g0283811 56.000 100 37 1 97 196 41 133 2.09e-31 117
Msa1159220 MtrunA17_Chr5g0417561 30.994 342 133 11 97 426 113 363 2.31e-31 123
Msa1159220 MtrunA17_Chr5g0417571 63.953 86 25 1 86 165 121 206 4.18e-31 121
Msa1159220 MtrunA17_Chr5g0417551 28.642 405 168 12 53 426 57 371 4.25e-31 122
Msa1159220 MtrunA17_Chr5g0417601 67.606 71 23 0 86 156 123 193 1.14e-27 113
Msa1159220 MtrunA17_Chr8g0367161 53.012 83 38 1 77 158 5 87 1.70e-25 106
Msa1159220 MtrunA17_Chr3g0127201 55.556 81 30 1 77 157 7 81 1.22e-24 102
Msa1159220 MtrunA17_Chr8g0346551 61.905 63 24 0 98 160 19 81 1.37e-24 102
Msa1159220 MtrunA17_Chr8g0374251 50.549 91 40 1 103 193 68 153 2.06e-24 103
Msa1159220 MtrunA17_Chr8g0374111 37.594 133 58 2 58 190 3 110 5.91e-24 99.4
Msa1159220 MtrunA17_Chr2g0308011 73.469 49 13 0 103 151 37 85 7.78e-24 98.6
Msa1159220 MtrunA17_Chr4g0010151 65.517 58 20 0 99 156 78 135 8.25e-24 102
Msa1159220 MtrunA17_Chr2g0326001 66.102 59 20 0 98 156 35 93 1.52e-23 99.8
Msa1159220 MtrunA17_Chr4g0047001 70.909 55 16 0 104 158 56 110 5.66e-23 99.8
Msa1159220 MtrunA17_Chr8g0341671 69.231 52 16 0 103 154 20 71 5.70e-23 96.7
Msa1159220 MtrunA17_Chr2g0328021 58.209 67 28 0 90 156 49 115 6.99e-23 97.8
Msa1159220 MtrunA17_Chr4g0061761 67.925 53 17 0 101 153 38 90 8.94e-23 98.2
Msa1159220 MtrunA17_Chr4g0031411 37.903 124 74 2 90 211 60 182 9.21e-23 98.6
Msa1159220 MtrunA17_Chr7g0237921 39.535 129 65 2 91 217 62 179 1.04e-22 98.6
Msa1159220 MtrunA17_Chr1g0188851 57.812 64 27 0 92 155 32 95 2.31e-22 96.7
Msa1159220 MtrunA17_Chr2g0282441 59.375 64 26 0 91 154 13 76 4.76e-22 96.7
Msa1159220 MtrunA17_Chr4g0030051 60.606 66 25 1 91 155 28 93 7.21e-22 95.1
Msa1159220 MtrunA17_Chr7g0223311 70.370 54 15 1 104 156 78 131 2.33e-21 95.1
Msa1159220 MtrunA17_Chr5g0411951 65.455 55 19 0 99 153 39 93 3.11e-21 94.0
Msa1159220 MtrunA17_Chr2g0282051 67.857 56 17 1 103 158 46 100 3.33e-21 92.8
Msa1159220 MtrunA17_Chr3g0126201 67.308 52 17 0 105 156 53 104 5.46e-21 93.2
Msa1159220 MtrunA17_Chr2g0282511 43.478 92 43 1 69 151 2 93 7.00e-21 92.8
Msa1159220 MtrunA17_Chr1g0177251 67.308 52 17 0 105 156 14 65 9.42e-21 92.0
Msa1159220 MtrunA17_Chr4g0047761 66.071 56 18 1 103 158 72 126 1.03e-20 92.4
Msa1159220 MtrunA17_Chr3g0117601 45.652 92 46 1 66 153 20 111 1.07e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159220 AT5G39660.3 36.486 370 181 13 40 393 77 408 1.56e-52 182
Msa1159220 AT5G39660.1 36.486 370 181 13 40 393 77 408 1.56e-52 182
Msa1159220 AT5G39660.2 36.486 370 181 13 40 393 77 408 1.56e-52 182
Msa1159220 AT3G47500.1 32.857 490 220 19 3 426 2 448 6.58e-51 178
Msa1159220 AT5G62430.1 33.333 399 111 13 3 392 1 253 2.27e-38 140
Msa1159220 AT1G26790.1 45.833 168 84 4 8 169 11 177 9.01e-35 133
Msa1159220 AT1G29160.1 81.667 60 11 0 97 156 56 115 1.13e-32 122
Msa1159220 AT2G34140.1 64.198 81 29 0 97 177 52 132 1.82e-32 121
Msa1159220 AT1G69570.1 70.270 74 22 0 96 169 125 198 4.60e-32 126
Msa1159220 AT5G60850.1 55.952 84 31 2 103 186 51 128 9.71e-25 103
Msa1159220 AT3G55370.1 57.143 70 30 0 99 168 72 141 1.39e-24 103
Msa1159220 AT3G55370.2 57.143 70 30 0 99 168 72 141 1.60e-24 104
Msa1159220 AT3G55370.3 57.143 70 30 0 99 168 117 186 2.70e-24 103
Msa1159220 AT1G51700.1 69.231 52 16 0 103 154 33 84 5.97e-24 99.0
Msa1159220 AT4G24060.1 61.538 65 25 0 92 156 42 106 7.08e-24 102
Msa1159220 AT5G60200.1 56.338 71 31 0 99 169 51 121 7.34e-24 100
Msa1159220 AT3G61850.2 64.407 59 21 0 98 156 57 115 2.08e-23 99.8
Msa1159220 AT3G61850.3 64.407 59 21 0 98 156 57 115 2.08e-23 99.8
Msa1159220 AT3G61850.1 64.407 59 21 0 98 156 69 127 2.75e-23 99.8
Msa1159220 AT3G61850.5 64.407 59 21 0 98 156 57 115 3.28e-23 99.8
Msa1159220 AT3G61850.4 64.407 59 21 0 98 156 69 127 4.28e-23 99.8
Msa1159220 AT2G28810.2 66.071 56 19 0 99 154 73 128 4.30e-23 99.8
Msa1159220 AT3G21270.1 69.811 53 16 0 103 155 29 81 4.37e-23 96.7
Msa1159220 AT2G28810.1 66.071 56 19 0 99 154 90 145 7.09e-23 99.4
Msa1159220 AT3G45610.1 52.857 70 33 0 99 168 36 105 8.28e-23 97.1
Msa1159220 AT2G37590.1 63.793 58 21 0 99 156 85 142 9.42e-23 99.0
Msa1159220 AT4G00940.1 58.333 72 26 1 91 158 52 123 9.79e-23 98.2
Msa1159220 AT4G00940.3 58.333 72 26 1 91 158 52 123 9.79e-23 98.2
Msa1159220 AT4G00940.2 58.333 72 26 1 91 158 52 123 9.79e-23 98.2
Msa1159220 AT1G07640.1 69.091 55 16 1 103 156 21 75 1.45e-22 97.1
Msa1159220 AT1G07640.2 69.091 55 16 1 103 156 77 131 1.85e-22 97.8
Msa1159220 AT1G28310.1 68.519 54 17 0 103 156 27 80 2.79e-22 97.1
Msa1159220 AT1G07640.3 69.091 55 16 1 103 156 85 139 2.90e-22 97.4
Msa1159220 AT5G65590.1 70.370 54 16 0 103 156 41 94 3.48e-22 97.1
Msa1159220 AT1G28310.2 68.519 54 17 0 103 156 51 104 4.20e-22 97.1
Msa1159220 AT1G64620.1 60.000 60 24 0 92 151 38 97 4.50e-22 97.1
Msa1159220 AT3G50410.1 70.588 51 15 0 105 155 32 82 7.78e-22 94.7
Msa1159220 AT4G38000.1 66.071 56 18 1 102 156 40 95 1.01e-21 94.0
Msa1159220 AT5G66940.1 53.731 67 31 0 103 169 32 98 1.36e-21 93.2
Msa1159220 AT5G02460.1 63.793 58 21 0 99 156 91 148 2.29e-21 95.9
Msa1159220 AT2G28510.1 66.071 56 19 0 105 160 50 105 2.35e-21 94.0
Msa1159220 AT4G21050.1 43.810 105 51 2 96 198 17 115 6.87e-21 90.9
Msa1159220 AT2G46590.1 62.264 53 20 0 98 150 63 115 1.50e-20 92.8
Msa1159220 AT3G52440.1 65.385 52 18 0 105 156 27 78 1.71e-20 90.5
Msa1159220 AT3G52440.2 46.429 84 39 1 79 156 14 97 1.74e-20 90.9
Msa1159220 AT2G46590.2 62.264 53 20 0 98 150 75 127 1.93e-20 92.8
Msa1159220 AT1G47655.1 70.213 47 14 0 105 151 31 77 4.41e-20 88.6
Msa1159220 AT1G21340.1 66.000 50 17 0 105 154 40 89 4.61e-20 89.7
Msa1159220 AT5G62940.1 57.812 64 26 1 91 153 60 123 1.12e-19 90.5
Msa1159220 AT4G21040.1 63.462 52 19 0 105 156 27 78 8.92e-18 82.4
Msa1159220 AT4G21080.1 57.895 57 24 0 105 161 27 83 3.57e-17 81.3
Msa1159220 AT4G21030.1 59.091 44 18 0 105 148 23 66 3.70e-11 62.4

Find 116 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTCATTAGGCTTCT+TGG 0.163156 7_4:-48796053 None:intergenic
TTTGGGTGGCTCTCAGATTT+TGG 0.205376 7_4:+48796087 Msa1159220:CDS
GATCATGGTATTATGCTATT+TGG 0.221788 7_4:+48793864 Msa1159220:CDS
AACGAGACTGTATTGAAATT+TGG 0.226290 7_4:+48795455 Msa1159220:CDS
TGTCCAATTCCGGCCAATTC+TGG 0.261036 7_4:+48793909 Msa1159220:CDS
AAAATTATTATATGCTTTCC+TGG 0.315121 7_4:-48796147 None:intergenic
GTGGGCTTGGAATTTACTAT+TGG 0.321756 7_4:-48795101 None:intergenic
GGTCCAGAATTGGCCGGAAT+TGG 0.321957 7_4:-48793912 None:intergenic
TACCCCTCTTTGCGAATCTA+TGG 0.325907 7_4:+48795484 Msa1159220:CDS
CGTGTCATCTTCGGTGGGCT+TGG 0.329098 7_4:-48795114 None:intergenic
TATCTCTACTGTGCTTTCCT+AGG 0.331251 7_4:-48795919 None:intergenic
TTTATCTTCATCTGTATTAC+CGG 0.340191 7_4:-48795141 None:intergenic
GCTATTTGGTTGGAAGATTC+CGG 0.345460 7_4:+48793878 Msa1159220:CDS
GATTCGCAAAGAGGGGTATC+AGG 0.381998 7_4:-48795479 None:intergenic
GCAAGAACTGCCAAAGGTAT+TGG 0.383831 7_4:+48795270 Msa1159220:CDS
ACACCTATGTTGGCAATTCC+AGG 0.386307 7_4:+48795773 Msa1159220:CDS
CAGAACACAATGCGTCAAAT+TGG 0.387472 7_4:+48795639 Msa1159220:CDS
ACCGGTCTCCGTGTCATCTT+CGG 0.389107 7_4:-48795123 None:intergenic
TTGGAATAATGTTGCTTCAA+TGG 0.402306 7_4:+48795709 Msa1159220:CDS
GGATCTTCTGTAACAAATAC+TGG 0.402489 7_4:+48795596 Msa1159220:CDS
TGTTGGCAATTCCAGGAATT+CGG 0.403673 7_4:+48795780 Msa1159220:CDS
AGACAATTCTTCTGATTCAA+TGG 0.409932 7_4:+48795046 Msa1159220:CDS
TTGGCCGGAATTGGACATTC+CGG 0.413804 7_4:-48793903 None:intergenic
CACCAGCAGTCCAATACCTT+TGG 0.414239 7_4:-48795280 None:intergenic
TCGTGGTTACTATAATTTGC+CGG 0.419212 7_4:-48795367 None:intergenic
GGTAGTACCCATGGAGAAAC+AGG 0.419330 7_4:-48795674 None:intergenic
ACAAGTAACAGTTGCTGCTC+AGG 0.422483 7_4:+48795881 Msa1159220:CDS
GGACACTGAACAATCTTGTC+TGG 0.427093 7_4:-48795176 None:intergenic
AACAGTTGCTGCTCAGGAAA+TGG 0.428682 7_4:+48795887 Msa1159220:CDS
ATCTCTACTGTGCTTTCCTA+GGG 0.444833 7_4:-48795918 None:intergenic
ATGTACCATGGGTCCAGAAT+TGG 0.447645 7_4:-48793922 None:intergenic
TTCCGATAGGTGCTGGGAGG+CGG 0.450898 7_4:+48795318 Msa1159220:CDS
CGGTCTCGAAAAGTCCTATC+CGG 0.453891 7_4:+48796017 Msa1159220:CDS
AGAAATGTTCCGATAGGTGC+TGG 0.459160 7_4:+48795311 Msa1159220:CDS
ATGGTATTATGCTATTTGGT+TGG 0.461686 7_4:+48793868 Msa1159220:CDS
AGAAGGAAAAGACTGTGTTT+TGG 0.462247 7_4:+48796069 Msa1159220:CDS
TGGTTGGAAGATTCCGGTGC+CGG 0.462466 7_4:+48793884 Msa1159220:CDS
ACAAGAGTCTATACCAGAAA+AGG 0.468668 7_4:+48795076 Msa1159220:CDS
CAAAACAGACAAGTGTGTTC+CGG 0.468871 7_4:+48795961 Msa1159220:CDS
CTACTGTGCTTTCCTAGGGT+TGG 0.476722 7_4:-48795914 None:intergenic
GGTGCCGGAATGTCCAATTC+CGG 0.477329 7_4:+48793899 Msa1159220:CDS
CGCGGTTGGAACTCCATTCG+TGG 0.478048 7_4:-48795384 None:intergenic
GTAACAAATACTGGTAATCA+AGG 0.479161 7_4:+48795605 Msa1159220:CDS
GTGTTATCCTGTTTCTCCAT+GGG 0.479488 7_4:+48795667 Msa1159220:CDS
AGGATACTTGCAGCAGTACA+AGG 0.490268 7_4:+48794979 Msa1159220:intron
TGATGTTGCTACAAGTTGTA+AGG 0.492562 7_4:-48795816 None:intergenic
AGTGTTATCCTGTTTCTCCA+TGG 0.495037 7_4:+48795666 Msa1159220:CDS
GGAATTGGACATTCCGGCAC+CGG 0.499395 7_4:-48793897 None:intergenic
TGCCAAAGGTATTGGACTGC+TGG 0.503181 7_4:+48795278 Msa1159220:CDS
AGAAGAATTGTCTTGTTGCT+CGG 0.510082 7_4:-48795036 None:intergenic
AGCACCTAGCCTCTCAATAC+CGG 0.512664 7_4:+48795348 Msa1159220:CDS
GTCTCCGTGTCATCTTCGGT+GGG 0.515097 7_4:-48795119 None:intergenic
TTCTCATGCTCATACAATCC+AGG 0.520401 7_4:+48796129 Msa1159220:CDS
TCTCGTTATCTGTGGATGTA+TGG 0.523197 7_4:-48795439 None:intergenic
TTCCGCCTCCCAGCACCTAT+CGG 0.529039 7_4:-48795320 None:intergenic
GTAGTTTCTAGCCTCGCGGT+TGG 0.531644 7_4:-48795398 None:intergenic
TATAATTTGCCGGTATTGAG+AGG 0.538214 7_4:-48795357 None:intergenic
GTGTCCGCGATGCAACAGTT+GGG 0.540349 7_4:+48795193 Msa1159220:CDS
GTTGTTGAAATAACAAAACT+TGG 0.540457 7_4:-48795219 None:intergenic
TGGGTACTACCGATGAATCC+AGG 0.542799 7_4:+48795686 Msa1159220:CDS
GCCAAGAAGCCTAATGAAGA+AGG 0.543984 7_4:+48796052 Msa1159220:CDS
CGACTTCGGCGTCCATGCAA+TGG 0.545722 7_4:+48795744 Msa1159220:CDS
ATTCCATAGATTCGCAAAGA+GGG 0.550091 7_4:-48795487 None:intergenic
TCTGAGACTCAGAAGGATCA+TGG 0.551941 7_4:+48793849 Msa1159220:CDS
GCAGCTAATGTAGCCCGGAT+AGG 0.554980 7_4:-48796031 None:intergenic
ATGAGAAATAGCTCCTGAGC+TGG 0.556629 7_4:-48796113 None:intergenic
GGTCTCCGTGTCATCTTCGG+TGG 0.557429 7_4:-48795120 None:intergenic
TTATTCCAACCTGGATTCAT+CGG 0.558134 7_4:-48795695 None:intergenic
ACCGAAGATGACACGGAGAC+CGG 0.559517 7_4:+48795122 Msa1159220:CDS
GGAAATGGCTCACCAACCCT+AGG 0.561749 7_4:+48795902 Msa1159220:CDS
CAGTTCTTGCAGAAATGTCG+AGG 0.563164 7_4:-48795257 None:intergenic
AGTGTCCGCGATGCAACAGT+TGG 0.576096 7_4:+48795192 Msa1159220:CDS
CAAATTATAGTAACCACGAA+TGG 0.580675 7_4:+48795371 Msa1159220:CDS
TCCGGCCAATTCTGGACCCA+TGG 0.581876 7_4:+48793917 Msa1159220:CDS
GCAGCAACTGTTACTTGTAG+AGG 0.584099 7_4:-48795876 None:intergenic
ATTCCTGGAATTGCCAACAT+AGG 0.584102 7_4:-48795776 None:intergenic
GGCAGCAGTTCATCCGACTT+CGG 0.588054 7_4:+48795730 Msa1159220:CDS
GGATTCATCGGTAGTACCCA+TGG 0.590034 7_4:-48795683 None:intergenic
CAATACAGTCTCGTTATCTG+TGG 0.591948 7_4:-48795447 None:intergenic
TCTTGGCAGCTAATGTAGCC+CGG 0.594372 7_4:-48796036 None:intergenic
GGTCTCGAAAAGTCCTATCC+GGG 0.604002 7_4:+48796018 Msa1159220:CDS
TACTACCGATGAATCCAGGT+TGG 0.604058 7_4:+48795690 Msa1159220:CDS
TAGTTGTGTGCAACATAGAG+AGG 0.605539 7_4:+48795559 Msa1159220:CDS
AACTTGTAGCAACATCACAT+TGG 0.606024 7_4:+48795822 Msa1159220:CDS
AGGTGTCGGACACCATTGCA+TGG 0.607368 7_4:-48795756 None:intergenic
CATTGCATGGACGCCGAAGT+CGG 0.609306 7_4:-48795743 None:intergenic
CGTTATCTGTGGATGTATGG+TGG 0.610481 7_4:-48795436 None:intergenic
GGAATTGCCAACATAGGTGT+CGG 0.611487 7_4:-48795770 None:intergenic
CAAGCCCACCGAAGATGACA+CGG 0.612556 7_4:+48795115 Msa1159220:CDS
GAAATGTTCCGATAGGTGCT+GGG 0.612734 7_4:+48795312 Msa1159220:CDS
GGCGGCGAGAGGCAAAGTGA+TGG 0.613227 7_4:-48795851 None:intergenic
CAGTACAAGGAAAACAGAAG+TGG 0.617838 7_4:+48794992 Msa1159220:CDS
TGTGGATGTATGGTGGTGAT+CGG 0.618792 7_4:-48795429 None:intergenic
GAAGCAACATTATTCCAACC+TGG 0.621410 7_4:-48795704 None:intergenic
CAAAGGTATTGGACTGCTGG+TGG 0.623552 7_4:+48795281 Msa1159220:CDS
TTCCATAGATTCGCAAAGAG+GGG 0.625856 7_4:-48795486 None:intergenic
TTGTAGAGGAAGGCGGCGAG+AGG 0.626239 7_4:-48795862 None:intergenic
TTTGCCGGTATTGAGAGGCT+AGG 0.626885 7_4:-48795352 None:intergenic
ACAGAAGATCCACACAAGGA+TGG 0.628739 7_4:-48795584 None:intergenic
GAACATGTCTGAGACTCAGA+AGG 0.629352 7_4:+48793842 Msa1159220:CDS
GATTCCATAGATTCGCAAAG+AGG 0.634135 7_4:-48795488 None:intergenic
CAACTGTTACTTGTAGAGGA+AGG 0.635921 7_4:-48795872 None:intergenic
ACGATGAGAAATGTTCCGAT+AGG 0.643759 7_4:+48795305 Msa1159220:CDS
AGAGAGGAGCCATCCTTGTG+TGG 0.646318 7_4:+48795575 Msa1159220:CDS
ATTTCTGCAAGAACTGCCAA+AGG 0.665461 7_4:+48795264 Msa1159220:CDS
GATGTTGCTACAAGTTGTAA+GGG 0.670537 7_4:-48795815 None:intergenic
GTAGCAACATCACATTGGAG+TGG 0.672249 7_4:+48795827 Msa1159220:CDS
ACCATGGGTCCAGAATTGGC+CGG 0.674302 7_4:-48793918 None:intergenic
CTGTTACTTGTAGAGGAAGG+CGG 0.676133 7_4:-48795869 None:intergenic
ATGGTGTCCGACACCTATGT+TGG 0.676992 7_4:+48795763 Msa1159220:CDS
TAGAACTGATGTCACAAATG+CGG 0.678472 7_4:+48795997 Msa1159220:CDS
GTTTGTAGTTTCTAGCCTCG+CGG 0.692706 7_4:-48795402 None:intergenic
TGTTACAGAAGATCCACACA+AGG 0.714256 7_4:-48795588 None:intergenic
GTGTCCCAACTGTTGCATCG+CGG 0.715720 7_4:-48795197 None:intergenic
ATGTTCCGATAGGTGCTGGG+AGG 0.729596 7_4:+48795315 Msa1159220:CDS
CGAATGGAGTTCCAACCGCG+AGG 0.739996 7_4:+48795387 Msa1159220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGTTTGTTTTCTTA+TGG + chr7_4:48794071-48794090 Msa1159220:intron 15.0%
!!! TATTTTGTTTGTTTTCTTAT+GGG + chr7_4:48794072-48794091 Msa1159220:intron 15.0%
!!! AAATTGATTTTTGTAATTCT+TGG + chr7_4:48794513-48794532 Msa1159220:intron 15.0%
!!! TTATTTTGTTTGTTTTCTTA+TGG + chr7_4:48794071-48794090 Msa1159220:intron 15.0%
!!! TATTTTGTTTGTTTTCTTAT+GGG + chr7_4:48794072-48794091 Msa1159220:intron 15.0%
!!! AAATTGATTTTTGTAATTCT+TGG + chr7_4:48794513-48794532 Msa1159220:intron 15.0%
!!! CTGTTTTTATGTTTTTTTGA+AGG + chr7_4:48793784-48793803 Msa1159220:five_prime_UTR 20.0%
!! TATAGTTATATATGTACCAT+GGG - chr7_4:48793936-48793955 None:intergenic 20.0%
!! TTATAGTTATATATGTACCA+TGG - chr7_4:48793937-48793956 None:intergenic 20.0%
!!! ATTTTGTTTGTTTTCTTATG+GGG + chr7_4:48794073-48794092 Msa1159220:intron 20.0%
!!! TCTTTATGTTTTAATTGTGA+TGG + chr7_4:48794442-48794461 Msa1159220:intron 20.0%
!!! TTTTTTATGATGATTTCTCT+TGG + chr7_4:48794614-48794633 Msa1159220:intron 20.0%
!!! TAATTCGTGGTTTAAATTTT+AGG + chr7_4:48794959-48794978 Msa1159220:intron 20.0%
!!! CTGTTTTTATGTTTTTTTGA+AGG + chr7_4:48793784-48793803 Msa1159220:five_prime_UTR 20.0%
!! TATAGTTATATATGTACCAT+GGG - chr7_4:48793936-48793955 None:intergenic 20.0%
!! TTATAGTTATATATGTACCA+TGG - chr7_4:48793937-48793956 None:intergenic 20.0%
!!! ATTTTGTTTGTTTTCTTATG+GGG + chr7_4:48794073-48794092 Msa1159220:intron 20.0%
!!! TCTTTATGTTTTAATTGTGA+TGG + chr7_4:48794442-48794461 Msa1159220:intron 20.0%
!!! TTTTTTATGATGATTTCTCT+TGG + chr7_4:48794614-48794633 Msa1159220:intron 20.0%
!!! TAATTCGTGGTTTAAATTTT+AGG + chr7_4:48794959-48794978 Msa1159220:intron 20.0%
! AAACATAAAAACAGAAACAG+AGG - chr7_4:48793778-48793797 None:intergenic 25.0%
! TTGTATGTTGCATATGAAAA+TGG + chr7_4:48794026-48794045 Msa1159220:intron 25.0%
! TGTATGTTGCATATGAAAAT+GGG + chr7_4:48794027-48794046 Msa1159220:intron 25.0%
!!! AGGATAATTTTGTTTCTTAG+TGG + chr7_4:48794159-48794178 Msa1159220:intron 25.0%
!!! ATAATTTTGTTTCTTAGTGG+AGG + chr7_4:48794162-48794181 Msa1159220:intron 25.0%
! GACCAATATAATGTAAACAA+AGG + chr7_4:48794336-48794355 Msa1159220:intron 25.0%
! CAATATAATGTAAACAAAGG+CGG + chr7_4:48794339-48794358 Msa1159220:intron 25.0%
! ATTCATCAATCATCAATCAT+TGG - chr7_4:48794392-48794411 None:intergenic 25.0%
! CATTTGTACACTTAATTTCT+AGG + chr7_4:48794587-48794606 Msa1159220:intron 25.0%
! TTTATCTTCATCTGTATTAC+CGG - chr7_4:48795144-48795163 None:intergenic 25.0%
! GTTGTTGAAATAACAAAACT+TGG - chr7_4:48795222-48795241 None:intergenic 25.0%
! AAACATAAAAACAGAAACAG+AGG - chr7_4:48793778-48793797 None:intergenic 25.0%
! TTGTATGTTGCATATGAAAA+TGG + chr7_4:48794026-48794045 Msa1159220:intron 25.0%
! TGTATGTTGCATATGAAAAT+GGG + chr7_4:48794027-48794046 Msa1159220:intron 25.0%
!!! AGGATAATTTTGTTTCTTAG+TGG + chr7_4:48794159-48794178 Msa1159220:intron 25.0%
!!! ATAATTTTGTTTCTTAGTGG+AGG + chr7_4:48794162-48794181 Msa1159220:intron 25.0%
! GACCAATATAATGTAAACAA+AGG + chr7_4:48794336-48794355 Msa1159220:intron 25.0%
! CAATATAATGTAAACAAAGG+CGG + chr7_4:48794339-48794358 Msa1159220:intron 25.0%
! ATTCATCAATCATCAATCAT+TGG - chr7_4:48794392-48794411 None:intergenic 25.0%
! CATTTGTACACTTAATTTCT+AGG + chr7_4:48794587-48794606 Msa1159220:intron 25.0%
! TTTATCTTCATCTGTATTAC+CGG - chr7_4:48795144-48795163 None:intergenic 25.0%
! GTTGTTGAAATAACAAAACT+TGG - chr7_4:48795222-48795241 None:intergenic 25.0%
GATCATGGTATTATGCTATT+TGG + chr7_4:48793864-48793883 Msa1159220:CDS 30.0%
! ATGGTATTATGCTATTTGGT+TGG + chr7_4:48793868-48793887 Msa1159220:CDS 30.0%
!! CAAAATCTTCTGAAGTTTGA+AGG + chr7_4:48794139-48794158 Msa1159220:intron 30.0%
!! GATTCATTTTAATGAGCTTG+AGG + chr7_4:48794200-48794219 Msa1159220:intron 30.0%
!! ATTTTAATGAGCTTGAGGTA+AGG + chr7_4:48794205-48794224 Msa1159220:intron 30.0%
GACTAAAGATTGTTATAGTC+CGG - chr7_4:48794262-48794281 None:intergenic 30.0%
! CGCCTTTGTTTACATTATAT+TGG - chr7_4:48794341-48794360 None:intergenic 30.0%
!!! GTTTTAATTGTGATGGAAGA+TGG + chr7_4:48794449-48794468 Msa1159220:intron 30.0%
! ATGACTCTAAGAAAATGAAG+AGG - chr7_4:48794570-48794589 None:intergenic 30.0%
TCCAATAGAAGTAAAAGATC+AGG + chr7_4:48794758-48794777 Msa1159220:intron 30.0%
! TCCTGATCTTTTACTTCTAT+TGG - chr7_4:48794762-48794781 None:intergenic 30.0%
TGTTATGCTTGCAAAATTTG+AGG + chr7_4:48794799-48794818 Msa1159220:intron 30.0%
! AGGACACAAGTATAACTTTT+TGG - chr7_4:48794827-48794846 None:intergenic 30.0%
ACAACAAATTCTCACATAAC+AGG - chr7_4:48794847-48794866 None:intergenic 30.0%
TAGACAGAGAAATGAAATCA+AGG - chr7_4:48794895-48794914 None:intergenic 30.0%
TCATTTCTCTGTCTATTCTT+AGG + chr7_4:48794900-48794919 Msa1159220:intron 30.0%
CTTAGTTTATCACTAATTCG+TGG + chr7_4:48794946-48794965 Msa1159220:intron 30.0%
AGACAATTCTTCTGATTCAA+TGG + chr7_4:48795046-48795065 Msa1159220:CDS 30.0%
CAAATTATAGTAACCACGAA+TGG + chr7_4:48795371-48795390 Msa1159220:CDS 30.0%
AACGAGACTGTATTGAAATT+TGG + chr7_4:48795455-48795474 Msa1159220:CDS 30.0%
GTAACAAATACTGGTAATCA+AGG + chr7_4:48795605-48795624 Msa1159220:CDS 30.0%
! TTGGAATAATGTTGCTTCAA+TGG + chr7_4:48795709-48795728 Msa1159220:CDS 30.0%
!! AGTTGTAAGGGTATATTTTG+TGG - chr7_4:48795806-48795825 None:intergenic 30.0%
!! GTTCTAATTGTTTTTCGAAC+CGG - chr7_4:48795983-48796002 None:intergenic 30.0%
GATCATGGTATTATGCTATT+TGG + chr7_4:48793864-48793883 Msa1159220:CDS 30.0%
! ATGGTATTATGCTATTTGGT+TGG + chr7_4:48793868-48793887 Msa1159220:CDS 30.0%
!! CAAAATCTTCTGAAGTTTGA+AGG + chr7_4:48794139-48794158 Msa1159220:intron 30.0%
!! GATTCATTTTAATGAGCTTG+AGG + chr7_4:48794200-48794219 Msa1159220:intron 30.0%
!! ATTTTAATGAGCTTGAGGTA+AGG + chr7_4:48794205-48794224 Msa1159220:intron 30.0%
GACTAAAGATTGTTATAGTC+CGG - chr7_4:48794262-48794281 None:intergenic 30.0%
! CGCCTTTGTTTACATTATAT+TGG - chr7_4:48794341-48794360 None:intergenic 30.0%
!!! GTTTTAATTGTGATGGAAGA+TGG + chr7_4:48794449-48794468 Msa1159220:intron 30.0%
! ATGACTCTAAGAAAATGAAG+AGG - chr7_4:48794570-48794589 None:intergenic 30.0%
TCCAATAGAAGTAAAAGATC+AGG + chr7_4:48794758-48794777 Msa1159220:intron 30.0%
! TCCTGATCTTTTACTTCTAT+TGG - chr7_4:48794762-48794781 None:intergenic 30.0%
TGTTATGCTTGCAAAATTTG+AGG + chr7_4:48794799-48794818 Msa1159220:intron 30.0%
! AGGACACAAGTATAACTTTT+TGG - chr7_4:48794827-48794846 None:intergenic 30.0%
ACAACAAATTCTCACATAAC+AGG - chr7_4:48794847-48794866 None:intergenic 30.0%
TAGACAGAGAAATGAAATCA+AGG - chr7_4:48794895-48794914 None:intergenic 30.0%
TCATTTCTCTGTCTATTCTT+AGG + chr7_4:48794900-48794919 Msa1159220:intron 30.0%
CTTAGTTTATCACTAATTCG+TGG + chr7_4:48794946-48794965 Msa1159220:intron 30.0%
AGACAATTCTTCTGATTCAA+TGG + chr7_4:48795046-48795065 Msa1159220:CDS 30.0%
CAAATTATAGTAACCACGAA+TGG + chr7_4:48795371-48795390 Msa1159220:CDS 30.0%
AACGAGACTGTATTGAAATT+TGG + chr7_4:48795455-48795474 Msa1159220:CDS 30.0%
GTAACAAATACTGGTAATCA+AGG + chr7_4:48795605-48795624 Msa1159220:CDS 30.0%
! TTGGAATAATGTTGCTTCAA+TGG + chr7_4:48795709-48795728 Msa1159220:CDS 30.0%
!! AGTTGTAAGGGTATATTTTG+TGG - chr7_4:48795806-48795825 None:intergenic 30.0%
!! GTTCTAATTGTTTTTCGAAC+CGG - chr7_4:48795983-48796002 None:intergenic 30.0%
GAAGAAAGACATAAGCTGAA+AGG - chr7_4:48793983-48794002 None:intergenic 35.0%
TGTTGCATATGAAAATGGGT+TGG + chr7_4:48794031-48794050 Msa1159220:intron 35.0%
!!! AATGGGTTGGACGTAAATTT+TGG + chr7_4:48794044-48794063 Msa1159220:intron 35.0%
! TATGGGGTTGTTGAGATTTT+TGG + chr7_4:48794089-48794108 Msa1159220:intron 35.0%
TAGTAATCCAGAGTTTAGCT+GGG - chr7_4:48794300-48794319 None:intergenic 35.0%
TGTAAACAAAGGCGGTATTT+AGG + chr7_4:48794347-48794366 Msa1159220:intron 35.0%
TTGATGTGAACCAAAGGATT+TGG + chr7_4:48794537-48794556 Msa1159220:intron 35.0%
! AAGATCAGGACTAGTGAAAT+AGG + chr7_4:48794772-48794791 Msa1159220:intron 35.0%
! AGAAGAATTGTCTTGTTGCT+CGG - chr7_4:48795039-48795058 None:intergenic 35.0%
ACAAGAGTCTATACCAGAAA+AGG + chr7_4:48795076-48795095 Msa1159220:CDS 35.0%
!!! TTTACTATTGGCTCCTTTTC+TGG - chr7_4:48795092-48795111 None:intergenic 35.0%
! TATAATTTGCCGGTATTGAG+AGG - chr7_4:48795360-48795379 None:intergenic 35.0%
! TCGTGGTTACTATAATTTGC+CGG - chr7_4:48795370-48795389 None:intergenic 35.0%
ATTCCATAGATTCGCAAAGA+GGG - chr7_4:48795490-48795509 None:intergenic 35.0%
GGATCTTCTGTAACAAATAC+TGG + chr7_4:48795596-48795615 Msa1159220:CDS 35.0%
TTATTCCAACCTGGATTCAT+CGG - chr7_4:48795698-48795717 None:intergenic 35.0%
GATGTTGCTACAAGTTGTAA+GGG - chr7_4:48795818-48795837 None:intergenic 35.0%
TGATGTTGCTACAAGTTGTA+AGG - chr7_4:48795819-48795838 None:intergenic 35.0%
AACTTGTAGCAACATCACAT+TGG + chr7_4:48795822-48795841 Msa1159220:CDS 35.0%
TAGAACTGATGTCACAAATG+CGG + chr7_4:48795997-48796016 Msa1159220:CDS 35.0%
! CAGTCTTTTCCTTCTTCATT+AGG - chr7_4:48796064-48796083 None:intergenic 35.0%
! AGAAGGAAAAGACTGTGTTT+TGG + chr7_4:48796069-48796088 Msa1159220:CDS 35.0%
! GAAGGAAAAGACTGTGTTTT+GGG + chr7_4:48796070-48796089 Msa1159220:CDS 35.0%
GAAGAAAGACATAAGCTGAA+AGG - chr7_4:48793983-48794002 None:intergenic 35.0%
TGTTGCATATGAAAATGGGT+TGG + chr7_4:48794031-48794050 Msa1159220:intron 35.0%
!!! AATGGGTTGGACGTAAATTT+TGG + chr7_4:48794044-48794063 Msa1159220:intron 35.0%
! TATGGGGTTGTTGAGATTTT+TGG + chr7_4:48794089-48794108 Msa1159220:intron 35.0%
TAGTAATCCAGAGTTTAGCT+GGG - chr7_4:48794300-48794319 None:intergenic 35.0%
TGTAAACAAAGGCGGTATTT+AGG + chr7_4:48794347-48794366 Msa1159220:intron 35.0%
TTGATGTGAACCAAAGGATT+TGG + chr7_4:48794537-48794556 Msa1159220:intron 35.0%
! AAGATCAGGACTAGTGAAAT+AGG + chr7_4:48794772-48794791 Msa1159220:intron 35.0%
! AGAAGAATTGTCTTGTTGCT+CGG - chr7_4:48795039-48795058 None:intergenic 35.0%
ACAAGAGTCTATACCAGAAA+AGG + chr7_4:48795076-48795095 Msa1159220:CDS 35.0%
!!! TTTACTATTGGCTCCTTTTC+TGG - chr7_4:48795092-48795111 None:intergenic 35.0%
! TATAATTTGCCGGTATTGAG+AGG - chr7_4:48795360-48795379 None:intergenic 35.0%
! TCGTGGTTACTATAATTTGC+CGG - chr7_4:48795370-48795389 None:intergenic 35.0%
ATTCCATAGATTCGCAAAGA+GGG - chr7_4:48795490-48795509 None:intergenic 35.0%
GGATCTTCTGTAACAAATAC+TGG + chr7_4:48795596-48795615 Msa1159220:CDS 35.0%
TTATTCCAACCTGGATTCAT+CGG - chr7_4:48795698-48795717 None:intergenic 35.0%
GATGTTGCTACAAGTTGTAA+GGG - chr7_4:48795818-48795837 None:intergenic 35.0%
TGATGTTGCTACAAGTTGTA+AGG - chr7_4:48795819-48795838 None:intergenic 35.0%
AACTTGTAGCAACATCACAT+TGG + chr7_4:48795822-48795841 Msa1159220:CDS 35.0%
TAGAACTGATGTCACAAATG+CGG + chr7_4:48795997-48796016 Msa1159220:CDS 35.0%
! CAGTCTTTTCCTTCTTCATT+AGG - chr7_4:48796064-48796083 None:intergenic 35.0%
! AGAAGGAAAAGACTGTGTTT+TGG + chr7_4:48796069-48796088 Msa1159220:CDS 35.0%
! GAAGGAAAAGACTGTGTTTT+GGG + chr7_4:48796070-48796089 Msa1159220:CDS 35.0%
GCTATTTGGTTGGAAGATTC+CGG + chr7_4:48793878-48793897 Msa1159220:CDS 40.0%
!!! GGGTTGTTGAGATTTTTGGT+TGG + chr7_4:48794093-48794112 Msa1159220:intron 40.0%
ACAAATTGTTCCGTAGAACC+CGG + chr7_4:48794228-48794247 Msa1159220:intron 40.0%
TTATAGTCCGGATTCAAACC+CGG - chr7_4:48794250-48794269 None:intergenic 40.0%
CTAGTAATCCAGAGTTTAGC+TGG - chr7_4:48794301-48794320 None:intergenic 40.0%
TCTGGATTACTAGAGAGTAG+AGG + chr7_4:48794308-48794327 Msa1159220:intron 40.0%
CTGGATTACTAGAGAGTAGA+GGG + chr7_4:48794309-48794328 Msa1159220:intron 40.0%
CTTGGATTGATGTGAACCAA+AGG + chr7_4:48794531-48794550 Msa1159220:intron 40.0%
AGGATCAAGACCAAATCCTT+TGG - chr7_4:48794550-48794569 None:intergenic 40.0%
! TCTGAGATAAGCAGAAGTTG+AGG + chr7_4:48794723-48794742 Msa1159220:intron 40.0%
CAGTACAAGGAAAACAGAAG+TGG + chr7_4:48794992-48795011 Msa1159220:CDS 40.0%
GTGGGCTTGGAATTTACTAT+TGG - chr7_4:48795104-48795123 None:intergenic 40.0%
ATTTCTGCAAGAACTGCCAA+AGG + chr7_4:48795264-48795283 Msa1159220:CDS 40.0%
ACGATGAGAAATGTTCCGAT+AGG + chr7_4:48795305-48795324 Msa1159220:CDS 40.0%
TCTCGTTATCTGTGGATGTA+TGG - chr7_4:48795442-48795461 None:intergenic 40.0%
CAATACAGTCTCGTTATCTG+TGG - chr7_4:48795450-48795469 None:intergenic 40.0%
TTCCATAGATTCGCAAAGAG+GGG - chr7_4:48795489-48795508 None:intergenic 40.0%
GATTCCATAGATTCGCAAAG+AGG - chr7_4:48795491-48795510 None:intergenic 40.0%
! TTGCATCAGCACTTCTTTTC+TGG - chr7_4:48795532-48795551 None:intergenic 40.0%
TAGTTGTGTGCAACATAGAG+AGG + chr7_4:48795559-48795578 Msa1159220:CDS 40.0%
TGTTACAGAAGATCCACACA+AGG - chr7_4:48795591-48795610 None:intergenic 40.0%
CAGAACACAATGCGTCAAAT+TGG + chr7_4:48795639-48795658 Msa1159220:CDS 40.0%
! AGTGTTATCCTGTTTCTCCA+TGG + chr7_4:48795666-48795685 Msa1159220:CDS 40.0%
! GTGTTATCCTGTTTCTCCAT+GGG + chr7_4:48795667-48795686 Msa1159220:CDS 40.0%
GAAGCAACATTATTCCAACC+TGG - chr7_4:48795707-48795726 None:intergenic 40.0%
ATTCCTGGAATTGCCAACAT+AGG - chr7_4:48795779-48795798 None:intergenic 40.0%
TGTTGGCAATTCCAGGAATT+CGG + chr7_4:48795780-48795799 Msa1159220:CDS 40.0%
! ATATTTTGTGGCCGAATTCC+TGG - chr7_4:48795794-48795813 None:intergenic 40.0%
! CAACTGTTACTTGTAGAGGA+AGG - chr7_4:48795875-48795894 None:intergenic 40.0%
ATCTCTACTGTGCTTTCCTA+GGG - chr7_4:48795921-48795940 None:intergenic 40.0%
TATCTCTACTGTGCTTTCCT+AGG - chr7_4:48795922-48795941 None:intergenic 40.0%
CAAAACAGACAAGTGTGTTC+CGG + chr7_4:48795961-48795980 Msa1159220:CDS 40.0%
TCCTTCTTCATTAGGCTTCT+TGG - chr7_4:48796056-48796075 None:intergenic 40.0%
TTCTCATGCTCATACAATCC+AGG + chr7_4:48796129-48796148 Msa1159220:CDS 40.0%
GCTATTTGGTTGGAAGATTC+CGG + chr7_4:48793878-48793897 Msa1159220:CDS 40.0%
!!! GGGTTGTTGAGATTTTTGGT+TGG + chr7_4:48794093-48794112 Msa1159220:intron 40.0%
ACAAATTGTTCCGTAGAACC+CGG + chr7_4:48794228-48794247 Msa1159220:intron 40.0%
TTATAGTCCGGATTCAAACC+CGG - chr7_4:48794250-48794269 None:intergenic 40.0%
CTAGTAATCCAGAGTTTAGC+TGG - chr7_4:48794301-48794320 None:intergenic 40.0%
TCTGGATTACTAGAGAGTAG+AGG + chr7_4:48794308-48794327 Msa1159220:intron 40.0%
CTGGATTACTAGAGAGTAGA+GGG + chr7_4:48794309-48794328 Msa1159220:intron 40.0%
CTTGGATTGATGTGAACCAA+AGG + chr7_4:48794531-48794550 Msa1159220:intron 40.0%
AGGATCAAGACCAAATCCTT+TGG - chr7_4:48794550-48794569 None:intergenic 40.0%
! TCTGAGATAAGCAGAAGTTG+AGG + chr7_4:48794723-48794742 Msa1159220:intron 40.0%
CAGTACAAGGAAAACAGAAG+TGG + chr7_4:48794992-48795011 Msa1159220:CDS 40.0%
GTGGGCTTGGAATTTACTAT+TGG - chr7_4:48795104-48795123 None:intergenic 40.0%
ATTTCTGCAAGAACTGCCAA+AGG + chr7_4:48795264-48795283 Msa1159220:CDS 40.0%
ACGATGAGAAATGTTCCGAT+AGG + chr7_4:48795305-48795324 Msa1159220:CDS 40.0%
TCTCGTTATCTGTGGATGTA+TGG - chr7_4:48795442-48795461 None:intergenic 40.0%
CAATACAGTCTCGTTATCTG+TGG - chr7_4:48795450-48795469 None:intergenic 40.0%
TTCCATAGATTCGCAAAGAG+GGG - chr7_4:48795489-48795508 None:intergenic 40.0%
GATTCCATAGATTCGCAAAG+AGG - chr7_4:48795491-48795510 None:intergenic 40.0%
! TTGCATCAGCACTTCTTTTC+TGG - chr7_4:48795532-48795551 None:intergenic 40.0%
TAGTTGTGTGCAACATAGAG+AGG + chr7_4:48795559-48795578 Msa1159220:CDS 40.0%
TGTTACAGAAGATCCACACA+AGG - chr7_4:48795591-48795610 None:intergenic 40.0%
CAGAACACAATGCGTCAAAT+TGG + chr7_4:48795639-48795658 Msa1159220:CDS 40.0%
! AGTGTTATCCTGTTTCTCCA+TGG + chr7_4:48795666-48795685 Msa1159220:CDS 40.0%
! GTGTTATCCTGTTTCTCCAT+GGG + chr7_4:48795667-48795686 Msa1159220:CDS 40.0%
GAAGCAACATTATTCCAACC+TGG - chr7_4:48795707-48795726 None:intergenic 40.0%
ATTCCTGGAATTGCCAACAT+AGG - chr7_4:48795779-48795798 None:intergenic 40.0%
TGTTGGCAATTCCAGGAATT+CGG + chr7_4:48795780-48795799 Msa1159220:CDS 40.0%
! ATATTTTGTGGCCGAATTCC+TGG - chr7_4:48795794-48795813 None:intergenic 40.0%
! CAACTGTTACTTGTAGAGGA+AGG - chr7_4:48795875-48795894 None:intergenic 40.0%
ATCTCTACTGTGCTTTCCTA+GGG - chr7_4:48795921-48795940 None:intergenic 40.0%
TATCTCTACTGTGCTTTCCT+AGG - chr7_4:48795922-48795941 None:intergenic 40.0%
CAAAACAGACAAGTGTGTTC+CGG + chr7_4:48795961-48795980 Msa1159220:CDS 40.0%
TCCTTCTTCATTAGGCTTCT+TGG - chr7_4:48796056-48796075 None:intergenic 40.0%
TTCTCATGCTCATACAATCC+AGG + chr7_4:48796129-48796148 Msa1159220:CDS 40.0%
! GAACATGTCTGAGACTCAGA+AGG + chr7_4:48793842-48793861 Msa1159220:CDS 45.0%
! TCTGAGACTCAGAAGGATCA+TGG + chr7_4:48793849-48793868 Msa1159220:CDS 45.0%
ATGTACCATGGGTCCAGAAT+TGG - chr7_4:48793925-48793944 None:intergenic 45.0%
CAAATTGTTCCGTAGAACCC+GGG + chr7_4:48794229-48794248 Msa1159220:intron 45.0%
TATAGTCCGGATTCAAACCC+GGG - chr7_4:48794249-48794268 None:intergenic 45.0%
CTTACTTCCCAGCTAAACTC+TGG + chr7_4:48794290-48794309 Msa1159220:intron 45.0%
AGGATACTTGCAGCAGTACA+AGG + chr7_4:48794979-48794998 Msa1159220:intron 45.0%
!!! TGCTCGGTTTTTTCTGCACA+AGG - chr7_4:48795023-48795042 None:intergenic 45.0%
GGACACTGAACAATCTTGTC+TGG - chr7_4:48795179-48795198 None:intergenic 45.0%
CAGTTCTTGCAGAAATGTCG+AGG - chr7_4:48795260-48795279 None:intergenic 45.0%
! GCAAGAACTGCCAAAGGTAT+TGG + chr7_4:48795270-48795289 Msa1159220:CDS 45.0%
AGAAATGTTCCGATAGGTGC+TGG + chr7_4:48795311-48795330 Msa1159220:CDS 45.0%
GAAATGTTCCGATAGGTGCT+GGG + chr7_4:48795312-48795331 Msa1159220:CDS 45.0%
!! GTTTGTAGTTTCTAGCCTCG+CGG - chr7_4:48795405-48795424 None:intergenic 45.0%
! TGTGGATGTATGGTGGTGAT+CGG - chr7_4:48795432-48795451 None:intergenic 45.0%
CGTTATCTGTGGATGTATGG+TGG - chr7_4:48795439-48795458 None:intergenic 45.0%
TACCCCTCTTTGCGAATCTA+TGG + chr7_4:48795484-48795503 Msa1159220:CDS 45.0%
ACAGAAGATCCACACAAGGA+TGG - chr7_4:48795587-48795606 None:intergenic 45.0%
TACTACCGATGAATCCAGGT+TGG + chr7_4:48795690-48795709 Msa1159220:CDS 45.0%
GGAATTGCCAACATAGGTGT+CGG - chr7_4:48795773-48795792 None:intergenic 45.0%
ACACCTATGTTGGCAATTCC+AGG + chr7_4:48795773-48795792 Msa1159220:CDS 45.0%
GTAGCAACATCACATTGGAG+TGG + chr7_4:48795827-48795846 Msa1159220:CDS 45.0%
! CTGTTACTTGTAGAGGAAGG+CGG - chr7_4:48795872-48795891 None:intergenic 45.0%
! GCAGCAACTGTTACTTGTAG+AGG - chr7_4:48795879-48795898 None:intergenic 45.0%
ACAAGTAACAGTTGCTGCTC+AGG + chr7_4:48795881-48795900 Msa1159220:CDS 45.0%
AACAGTTGCTGCTCAGGAAA+TGG + chr7_4:48795887-48795906 Msa1159220:CDS 45.0%
GCCAAGAAGCCTAATGAAGA+AGG + chr7_4:48796052-48796071 Msa1159220:CDS 45.0%
!! GGAAAAGACTGTGTTTTGGG+TGG + chr7_4:48796073-48796092 Msa1159220:CDS 45.0%
! TTTGGGTGGCTCTCAGATTT+TGG + chr7_4:48796087-48796106 Msa1159220:CDS 45.0%
ATGAGAAATAGCTCCTGAGC+TGG - chr7_4:48796116-48796135 None:intergenic 45.0%
! GAACATGTCTGAGACTCAGA+AGG + chr7_4:48793842-48793861 Msa1159220:CDS 45.0%
! TCTGAGACTCAGAAGGATCA+TGG + chr7_4:48793849-48793868 Msa1159220:CDS 45.0%
ATGTACCATGGGTCCAGAAT+TGG - chr7_4:48793925-48793944 None:intergenic 45.0%
CAAATTGTTCCGTAGAACCC+GGG + chr7_4:48794229-48794248 Msa1159220:intron 45.0%
TATAGTCCGGATTCAAACCC+GGG - chr7_4:48794249-48794268 None:intergenic 45.0%
CTTACTTCCCAGCTAAACTC+TGG + chr7_4:48794290-48794309 Msa1159220:intron 45.0%
AGGATACTTGCAGCAGTACA+AGG + chr7_4:48794979-48794998 Msa1159220:intron 45.0%
!!! TGCTCGGTTTTTTCTGCACA+AGG - chr7_4:48795023-48795042 None:intergenic 45.0%
GGACACTGAACAATCTTGTC+TGG - chr7_4:48795179-48795198 None:intergenic 45.0%
CAGTTCTTGCAGAAATGTCG+AGG - chr7_4:48795260-48795279 None:intergenic 45.0%
! GCAAGAACTGCCAAAGGTAT+TGG + chr7_4:48795270-48795289 Msa1159220:CDS 45.0%
AGAAATGTTCCGATAGGTGC+TGG + chr7_4:48795311-48795330 Msa1159220:CDS 45.0%
GAAATGTTCCGATAGGTGCT+GGG + chr7_4:48795312-48795331 Msa1159220:CDS 45.0%
!! GTTTGTAGTTTCTAGCCTCG+CGG - chr7_4:48795405-48795424 None:intergenic 45.0%
! TGTGGATGTATGGTGGTGAT+CGG - chr7_4:48795432-48795451 None:intergenic 45.0%
CGTTATCTGTGGATGTATGG+TGG - chr7_4:48795439-48795458 None:intergenic 45.0%
TACCCCTCTTTGCGAATCTA+TGG + chr7_4:48795484-48795503 Msa1159220:CDS 45.0%
ACAGAAGATCCACACAAGGA+TGG - chr7_4:48795587-48795606 None:intergenic 45.0%
TACTACCGATGAATCCAGGT+TGG + chr7_4:48795690-48795709 Msa1159220:CDS 45.0%
GGAATTGCCAACATAGGTGT+CGG - chr7_4:48795773-48795792 None:intergenic 45.0%
ACACCTATGTTGGCAATTCC+AGG + chr7_4:48795773-48795792 Msa1159220:CDS 45.0%
GTAGCAACATCACATTGGAG+TGG + chr7_4:48795827-48795846 Msa1159220:CDS 45.0%
! CTGTTACTTGTAGAGGAAGG+CGG - chr7_4:48795872-48795891 None:intergenic 45.0%
! GCAGCAACTGTTACTTGTAG+AGG - chr7_4:48795879-48795898 None:intergenic 45.0%
ACAAGTAACAGTTGCTGCTC+AGG + chr7_4:48795881-48795900 Msa1159220:CDS 45.0%
AACAGTTGCTGCTCAGGAAA+TGG + chr7_4:48795887-48795906 Msa1159220:CDS 45.0%
GCCAAGAAGCCTAATGAAGA+AGG + chr7_4:48796052-48796071 Msa1159220:CDS 45.0%
!! GGAAAAGACTGTGTTTTGGG+TGG + chr7_4:48796073-48796092 Msa1159220:CDS 45.0%
! TTTGGGTGGCTCTCAGATTT+TGG + chr7_4:48796087-48796106 Msa1159220:CDS 45.0%
ATGAGAAATAGCTCCTGAGC+TGG - chr7_4:48796116-48796135 None:intergenic 45.0%
TTGGCCGGAATTGGACATTC+CGG - chr7_4:48793906-48793925 None:intergenic 50.0%
TGTCCAATTCCGGCCAATTC+TGG + chr7_4:48793909-48793928 Msa1159220:CDS 50.0%
GGATTCAAACCCGGGTTCTA+CGG - chr7_4:48794241-48794260 None:intergenic 50.0%
GTAGAACCCGGGTTTGAATC+CGG + chr7_4:48794240-48794259 Msa1159220:intron 50.0%
!! TGCCAAAGGTATTGGACTGC+TGG + chr7_4:48795278-48795297 Msa1159220:CDS 50.0%
CACCAGCAGTCCAATACCTT+TGG - chr7_4:48795283-48795302 None:intergenic 50.0%
!! CAAAGGTATTGGACTGCTGG+TGG + chr7_4:48795281-48795300 Msa1159220:CDS 50.0%
AGCACCTAGCCTCTCAATAC+CGG + chr7_4:48795348-48795367 Msa1159220:CDS 50.0%
! TTTGCCGGTATTGAGAGGCT+AGG - chr7_4:48795355-48795374 None:intergenic 50.0%
!! GATTCGCAAAGAGGGGTATC+AGG - chr7_4:48795482-48795501 None:intergenic 50.0%
GGTAGTACCCATGGAGAAAC+AGG - chr7_4:48795677-48795696 None:intergenic 50.0%
GGATTCATCGGTAGTACCCA+TGG - chr7_4:48795686-48795705 None:intergenic 50.0%
TGGGTACTACCGATGAATCC+AGG + chr7_4:48795686-48795705 Msa1159220:CDS 50.0%
ATGGTGTCCGACACCTATGT+TGG + chr7_4:48795763-48795782 Msa1159220:CDS 50.0%
CTACTGTGCTTTCCTAGGGT+TGG - chr7_4:48795917-48795936 None:intergenic 50.0%
CGGTCTCGAAAAGTCCTATC+CGG + chr7_4:48796017-48796036 Msa1159220:CDS 50.0%
GGTCTCGAAAAGTCCTATCC+GGG + chr7_4:48796018-48796037 Msa1159220:CDS 50.0%
TCTTGGCAGCTAATGTAGCC+CGG - chr7_4:48796039-48796058 None:intergenic 50.0%
!! CAGATTTTGGAAGCCAGCTC+AGG + chr7_4:48796100-48796119 Msa1159220:CDS 50.0%
TTGGCCGGAATTGGACATTC+CGG - chr7_4:48793906-48793925 None:intergenic 50.0%
TGTCCAATTCCGGCCAATTC+TGG + chr7_4:48793909-48793928 Msa1159220:CDS 50.0%
GGATTCAAACCCGGGTTCTA+CGG - chr7_4:48794241-48794260 None:intergenic 50.0%
GTAGAACCCGGGTTTGAATC+CGG + chr7_4:48794240-48794259 Msa1159220:intron 50.0%
!! TGCCAAAGGTATTGGACTGC+TGG + chr7_4:48795278-48795297 Msa1159220:CDS 50.0%
CACCAGCAGTCCAATACCTT+TGG - chr7_4:48795283-48795302 None:intergenic 50.0%
!! CAAAGGTATTGGACTGCTGG+TGG + chr7_4:48795281-48795300 Msa1159220:CDS 50.0%
AGCACCTAGCCTCTCAATAC+CGG + chr7_4:48795348-48795367 Msa1159220:CDS 50.0%
! TTTGCCGGTATTGAGAGGCT+AGG - chr7_4:48795355-48795374 None:intergenic 50.0%
!! GATTCGCAAAGAGGGGTATC+AGG - chr7_4:48795482-48795501 None:intergenic 50.0%
GGTAGTACCCATGGAGAAAC+AGG - chr7_4:48795677-48795696 None:intergenic 50.0%
GGATTCATCGGTAGTACCCA+TGG - chr7_4:48795686-48795705 None:intergenic 50.0%
TGGGTACTACCGATGAATCC+AGG + chr7_4:48795686-48795705 Msa1159220:CDS 50.0%
ATGGTGTCCGACACCTATGT+TGG + chr7_4:48795763-48795782 Msa1159220:CDS 50.0%
CTACTGTGCTTTCCTAGGGT+TGG - chr7_4:48795917-48795936 None:intergenic 50.0%
CGGTCTCGAAAAGTCCTATC+CGG + chr7_4:48796017-48796036 Msa1159220:CDS 50.0%
GGTCTCGAAAAGTCCTATCC+GGG + chr7_4:48796018-48796037 Msa1159220:CDS 50.0%
TCTTGGCAGCTAATGTAGCC+CGG - chr7_4:48796039-48796058 None:intergenic 50.0%
!! CAGATTTTGGAAGCCAGCTC+AGG + chr7_4:48796100-48796119 Msa1159220:CDS 50.0%
TGGTTGGAAGATTCCGGTGC+CGG + chr7_4:48793884-48793903 Msa1159220:CDS 55.0%
GGAATTGGACATTCCGGCAC+CGG - chr7_4:48793900-48793919 None:intergenic 55.0%
! GGTGCCGGAATGTCCAATTC+CGG + chr7_4:48793899-48793918 Msa1159220:CDS 55.0%
GGTCCAGAATTGGCCGGAAT+TGG - chr7_4:48793915-48793934 None:intergenic 55.0%
ACCATGGGTCCAGAATTGGC+CGG - chr7_4:48793921-48793940 None:intergenic 55.0%
CAAGCCCACCGAAGATGACA+CGG + chr7_4:48795115-48795134 Msa1159220:CDS 55.0%
GTCTCCGTGTCATCTTCGGT+GGG - chr7_4:48795122-48795141 None:intergenic 55.0%
ACCGAAGATGACACGGAGAC+CGG + chr7_4:48795122-48795141 Msa1159220:CDS 55.0%
ACCGGTCTCCGTGTCATCTT+CGG - chr7_4:48795126-48795145 None:intergenic 55.0%
AGTGTCCGCGATGCAACAGT+TGG + chr7_4:48795192-48795211 Msa1159220:CDS 55.0%
GTGTCCGCGATGCAACAGTT+GGG + chr7_4:48795193-48795212 Msa1159220:CDS 55.0%
GTGTCCCAACTGTTGCATCG+CGG - chr7_4:48795200-48795219 None:intergenic 55.0%
!! ATGTTCCGATAGGTGCTGGG+AGG + chr7_4:48795315-48795334 Msa1159220:CDS 55.0%
!! GTAGTTTCTAGCCTCGCGGT+TGG - chr7_4:48795401-48795420 None:intergenic 55.0%
AGAGAGGAGCCATCCTTGTG+TGG + chr7_4:48795575-48795594 Msa1159220:CDS 55.0%
GGCAGCAGTTCATCCGACTT+CGG + chr7_4:48795730-48795749 Msa1159220:CDS 55.0%
CATTGCATGGACGCCGAAGT+CGG - chr7_4:48795746-48795765 None:intergenic 55.0%
!! AGGTGTCGGACACCATTGCA+TGG - chr7_4:48795759-48795778 None:intergenic 55.0%
GGAAATGGCTCACCAACCCT+AGG + chr7_4:48795902-48795921 Msa1159220:CDS 55.0%
GCAGCTAATGTAGCCCGGAT+AGG - chr7_4:48796034-48796053 None:intergenic 55.0%
TGGTTGGAAGATTCCGGTGC+CGG + chr7_4:48793884-48793903 Msa1159220:CDS 55.0%
GGAATTGGACATTCCGGCAC+CGG - chr7_4:48793900-48793919 None:intergenic 55.0%
! GGTGCCGGAATGTCCAATTC+CGG + chr7_4:48793899-48793918 Msa1159220:CDS 55.0%
GGTCCAGAATTGGCCGGAAT+TGG - chr7_4:48793915-48793934 None:intergenic 55.0%
ACCATGGGTCCAGAATTGGC+CGG - chr7_4:48793921-48793940 None:intergenic 55.0%
CAAGCCCACCGAAGATGACA+CGG + chr7_4:48795115-48795134 Msa1159220:CDS 55.0%
GTCTCCGTGTCATCTTCGGT+GGG - chr7_4:48795122-48795141 None:intergenic 55.0%
ACCGAAGATGACACGGAGAC+CGG + chr7_4:48795122-48795141 Msa1159220:CDS 55.0%
ACCGGTCTCCGTGTCATCTT+CGG - chr7_4:48795126-48795145 None:intergenic 55.0%
AGTGTCCGCGATGCAACAGT+TGG + chr7_4:48795192-48795211 Msa1159220:CDS 55.0%
GTGTCCGCGATGCAACAGTT+GGG + chr7_4:48795193-48795212 Msa1159220:CDS 55.0%
GTGTCCCAACTGTTGCATCG+CGG - chr7_4:48795200-48795219 None:intergenic 55.0%
!! ATGTTCCGATAGGTGCTGGG+AGG + chr7_4:48795315-48795334 Msa1159220:CDS 55.0%
!! GTAGTTTCTAGCCTCGCGGT+TGG - chr7_4:48795401-48795420 None:intergenic 55.0%
AGAGAGGAGCCATCCTTGTG+TGG + chr7_4:48795575-48795594 Msa1159220:CDS 55.0%
GGCAGCAGTTCATCCGACTT+CGG + chr7_4:48795730-48795749 Msa1159220:CDS 55.0%
CATTGCATGGACGCCGAAGT+CGG - chr7_4:48795746-48795765 None:intergenic 55.0%
!! AGGTGTCGGACACCATTGCA+TGG - chr7_4:48795759-48795778 None:intergenic 55.0%
GGAAATGGCTCACCAACCCT+AGG + chr7_4:48795902-48795921 Msa1159220:CDS 55.0%
GCAGCTAATGTAGCCCGGAT+AGG - chr7_4:48796034-48796053 None:intergenic 55.0%
TCCGGCCAATTCTGGACCCA+TGG + chr7_4:48793917-48793936 Msa1159220:CDS 60.0%
! CGTGTCATCTTCGGTGGGCT+TGG - chr7_4:48795117-48795136 None:intergenic 60.0%
GGTCTCCGTGTCATCTTCGG+TGG - chr7_4:48795123-48795142 None:intergenic 60.0%
!! TTCCGATAGGTGCTGGGAGG+CGG + chr7_4:48795318-48795337 Msa1159220:CDS 60.0%
TTCCGCCTCCCAGCACCTAT+CGG - chr7_4:48795323-48795342 None:intergenic 60.0%
CGCGGTTGGAACTCCATTCG+TGG - chr7_4:48795387-48795406 None:intergenic 60.0%
CGAATGGAGTTCCAACCGCG+AGG + chr7_4:48795387-48795406 Msa1159220:CDS 60.0%
CGACTTCGGCGTCCATGCAA+TGG + chr7_4:48795744-48795763 Msa1159220:CDS 60.0%
TTGTAGAGGAAGGCGGCGAG+AGG - chr7_4:48795865-48795884 None:intergenic 60.0%
TCCGGCCAATTCTGGACCCA+TGG + chr7_4:48793917-48793936 Msa1159220:CDS 60.0%
! CGTGTCATCTTCGGTGGGCT+TGG - chr7_4:48795117-48795136 None:intergenic 60.0%
GGTCTCCGTGTCATCTTCGG+TGG - chr7_4:48795123-48795142 None:intergenic 60.0%
!! TTCCGATAGGTGCTGGGAGG+CGG + chr7_4:48795318-48795337 Msa1159220:CDS 60.0%
TTCCGCCTCCCAGCACCTAT+CGG - chr7_4:48795323-48795342 None:intergenic 60.0%
CGCGGTTGGAACTCCATTCG+TGG - chr7_4:48795387-48795406 None:intergenic 60.0%
CGAATGGAGTTCCAACCGCG+AGG + chr7_4:48795387-48795406 Msa1159220:CDS 60.0%
CGACTTCGGCGTCCATGCAA+TGG + chr7_4:48795744-48795763 Msa1159220:CDS 60.0%
TTGTAGAGGAAGGCGGCGAG+AGG - chr7_4:48795865-48795884 None:intergenic 60.0%
GGCGGCGAGAGGCAAAGTGA+TGG - chr7_4:48795854-48795873 None:intergenic 65.0%
GGCGGCGAGAGGCAAAGTGA+TGG - chr7_4:48795854-48795873 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 48793729 48796162 48793729 ID=Msa1159220;Name=Msa1159220
chr7_4 mRNA 48793729 48796162 48793729 ID=Msa1159220-mRNA-1;Parent=Msa1159220;Name=Msa1159220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|0.5|1|1|1|2|0|426
chr7_4 exon 48793729 48793938 48793729 ID=Msa1159220-mRNA-1:exon:13289;Parent=Msa1159220-mRNA-1
chr7_4 exon 48794981 48796162 48794981 ID=Msa1159220-mRNA-1:exon:13290;Parent=Msa1159220-mRNA-1
chr7_4 five_prime_UTR 48793729 48793839 48793729 ID=Msa1159220-mRNA-1:five_prime_utr;Parent=Msa1159220-mRNA-1
chr7_4 CDS 48793840 48793938 48793840 ID=Msa1159220-mRNA-1:cds;Parent=Msa1159220-mRNA-1
chr7_4 CDS 48794981 48796162 48794981 ID=Msa1159220-mRNA-1:cds;Parent=Msa1159220-mRNA-1
Gene Sequence

>Msa1159220

ATGAACATGTCTGAGACTCAGAAGGATCATGGTATTATGCTATTTGGTTGGAAGATTCCGGTGCCGGAATGTCCAATTCCGGCCAATTCTGGACCCATGGATACTTGCAGCAGTACAAGGAAAACAGAAGTGGAAATACCTTGTGCAGAAAAAACCGAGCAACAAGACAATTCTTCTGATTCAATGGATAGTAAACAAGAGTCTATACCAGAAAAGGAGCCAATAGTAAATTCCAAGCCCACCGAAGATGACACGGAGACCGGTAATACAGATGAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACCACGAATGGAGTTCCAACCGCGAGGCTAGAAACTACAAACTCATCCGATCACCACCATACATCCACAGATAACGAGACTGTATTGAAATTTGGTCCTGATACCCCTCTTTGCGAATCTATGGAATCAATGCTTCATCTTAGAGACCAGAAAAGAAGTGCTGATGCAAATTCTAATAGTTGTGTGCAACATAGAGAGGAGCCATCCTTGTGTGGATCTTCTGTAACAAATACTGGTAATCAAGGAAATGAAGTATCAGAACACAATGCGTCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCGATGAATCCAGGTTGGAATAATGTTGCTTCAATGGCAGCAGTTCATCCGACTTCGGCGTCCATGCAATGGTGTCCGACACCTATGTTGGCAATTCCAGGAATTCGGCCACAAAATATACCCTTACAACTTGTAGCAACATCACATTGGAGTGGACCATCACTTTGCCTCTCGCCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGCTCACCAACCCTAGGAAAGCACAGTAGAGATACAGTTTTTGCAGATGAAGACAAAACAGACAAGTGTGTTCCGGTTCGAAAAACAATTAGAACTGATGTCACAAATGCGGTCTCGAAAAGTCCTATCCGGGCTACATTAGCTGCCAAGAAGCCTAATGAAGAAGGAAAAGACTGTGTTTTGGGTGGCTCTCAGATTTTGGAAGCCAGCTCAGGAGCTATTTCTCATGCTCATACAATCCAGGAAAGCATATAA
Protein sequence

>Msa1159220

MNMSETQKDHGIMLFGWKIPVPECPIPANSGPMDTCSSTRKTEVEIPCAEKTEQQDNSSDSMDSKQESIPEKEPIVNSKPTEDDTETGNTDEDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTTNGVPTARLETTNSSDHHHTSTDNETVLKFGPDTPLCESMESMLHLRDQKRSADANSNSCVQHREEPSLCGSSVTNTGNQGNEVSEHNASNWLQCYPVSPWVLPMNPGWNNVASMAAVHPTSASMQWCPTPMLAIPGIRPQNIPLQLVATSHWSGPSLCLSPPSSTSNSCCSGNGSPTLGKHSRDTVFADEDKTDKCVPVRKTIRTDVTNAVSKSPIRATLAAKKPNEEGKDCVLGGSQILEASSGAISHAHTIQESI*