AlfalfaGEDB | Msa1160750

M. sativa cultivar zhongmu-4 / Msa1160750

KEGG: K00924
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160750	XP_003624963.1	95.146	618	4	3	1	615	1	595	0.0	1192

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160750	sp\|O80673\|CAMK1_ARATH	75.935	615	109	6	1	615	1	576	0.0	946

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160750	Q2HT01	95.146	618	4	3	1	615	1	595	0.0	1192

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160750	MtrunA17_Chr7g0256001	95.146	618	4	3	1	615	1	595	0.0	1192
Msa1160750	MtrunA17_Chr8g0374701	65.316	617	162	11	1	608	1	574	0.0	792
Msa1160750	MtrunA17_Chr4g0045261	66.343	618	175	7	1	614	1	589	0.0	791
Msa1160750	MtrunA17_Chr5g0402551	63.124	621	175	8	1	608	1	580	0.0	775
Msa1160750	MtrunA17_Chr7g0276111	54.945	637	214	9	1	611	1	590	0.0	676
Msa1160750	MtrunA17_Chr3g0127571	57.958	578	194	8	39	611	50	583	0.0	649
Msa1160750	MtrunA17_Chr5g0405421	47.444	489	226	5	123	608	84	544	7.98e-143	426
Msa1160750	MtrunA17_Chr4g0059951	39.915	471	243	7	140	604	75	511	5.82e-109	338
Msa1160750	MtrunA17_Chr7g0257751	39.916	476	244	10	136	604	56	496	1.45e-108	337
Msa1160750	MtrunA17_Chr1g0173541	38.205	479	258	7	131	604	45	490	5.44e-108	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1160750	AT2G41140.1	75.935	615	109	6	1	615	1	576	946
Msa1160750	AT3G56760.1	76.260	615	108	5	1	615	1	577	936
Msa1160750	AT3G50530.1	71.304	575	131	6	43	611	51	597	838
Msa1160750	AT3G50530.2	67.657	606	131	7	43	611	51	628	822
Msa1160750	AT1G49580.1	60.835	623	209	4	1	611	1	600	746
Msa1160750	AT3G19100.1	60.674	623	201	8	1	610	1	592	743
Msa1160750	AT2G46700.1	56.847	628	219	8	1	613	1	591	658
Msa1160750	AT5G24430.1	53.686	624	240	10	1	611	1	588	617
Msa1160750	AT3G49370.1	53.175	630	233	10	1	611	1	587	599
Msa1160750	AT2G46700.2	61.785	437	140	3	177	613	1	410	548

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Find 164 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCTTATGATCAAGA+AGG	0.505222	7_4:+50816637	None:intergenic
AAAGATCTTATGATCAAGAA+GGG	0.569414	7_4:+50816638	None:intergenic
AAAGTCTATATATAGCTTGT+TGG	0.438697	7_4:-50816528	Msa1160750:three_prime_UTR
AAATTGTAAGAGGAATGAGA+AGG	0.672165	7_4:+50822525	None:intergenic
AACTGGAGGGAATGGACACG+TGG	0.603162	7_4:-50817880	Msa1160750:CDS
AACTTTGATGATGATTTAGT+TGG	0.470518	7_4:+50822072	None:intergenic
AAGAAACTTGGTAATGGACT+TGG	0.465527	7_4:+50822036	None:intergenic
AAGATATTGCGAGCTCTAAC+TGG	0.288240	7_4:-50821070	Msa1160750:CDS
AAGGGAGTGAGTGTGAAGTT+GGG	0.577397	7_4:-50821846	Msa1160750:CDS
AAGTCTATATATAGCTTGTT+GGG	0.442925	7_4:-50816527	Msa1160750:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGTAAGAGGAATGAGA+AGG	+	chr7_4:50816263-50816282	None:intergenic	30.0%
ATAGGGAAGGAATATTAAGA+AGG	+	chr7_4:50816334-50816353	None:intergenic	30.0%
CAAAATGAGAAATCTGAGAA+GGG	+	chr7_4:50816446-50816465	None:intergenic	30.0%
TCAAAATGAGAAATCTGAGA+AGG	+	chr7_4:50816447-50816466	None:intergenic	30.0%
TCTCTATGTGAAGTTTCAAT+GGG	+	chr7_4:50816617-50816636	None:intergenic	30.0%
TTCTCTATGTGAAGTTTCAA+TGG	+	chr7_4:50816618-50816637	None:intergenic	30.0%
TTTATGCCTTGTATTCTATG+TGG	-	chr7_4:50817436-50817455	Msa1160750:intron	30.0%
CTTATATATTTGGGCAATGT+TGG	-	chr7_4:50817647-50817666	Msa1160750:intron	30.0%
AATTATAAGGGTAACTAGTG+AGG	+	chr7_4:50817835-50817854	None:intergenic	30.0%
AATTCTTAAATGCCACTGAA+AGG	-	chr7_4:50817851-50817870	Msa1160750:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	50816208	50822599	50816208	ID=Msa1160750;Name=Msa1160750
chr7_4	mRNA	50816208	50822599	50816208	ID=Msa1160750-mRNA-1;Parent=Msa1160750;Name=Msa1160750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=385\|0.9\|0.90\|1\|1\|1\|11\|487\|615
chr7_4	exon	50816208	50816832	50816208	ID=Msa1160750-mRNA-1:exon:14262;Parent=Msa1160750-mRNA-1
chr7_4	exon	50817802	50817969	50817802	ID=Msa1160750-mRNA-1:exon:14261;Parent=Msa1160750-mRNA-1
chr7_4	exon	50818063	50818125	50818063	ID=Msa1160750-mRNA-1:exon:14260;Parent=Msa1160750-mRNA-1
chr7_4	exon	50818198	50818305	50818198	ID=Msa1160750-mRNA-1:exon:14259;Parent=Msa1160750-mRNA-1
chr7_4	exon	50818807	50818922	50818807	ID=Msa1160750-mRNA-1:exon:14258;Parent=Msa1160750-mRNA-1
chr7_4	exon	50819018	50819314	50819018	ID=Msa1160750-mRNA-1:exon:14257;Parent=Msa1160750-mRNA-1
chr7_4	exon	50819399	50819477	50819399	ID=Msa1160750-mRNA-1:exon:14256;Parent=Msa1160750-mRNA-1
chr7_4	exon	50820300	50820408	50820300	ID=Msa1160750-mRNA-1:exon:14255;Parent=Msa1160750-mRNA-1
chr7_4	exon	50820547	50820657	50820547	ID=Msa1160750-mRNA-1:exon:14254;Parent=Msa1160750-mRNA-1
chr7_4	exon	50821004	50821134	50821004	ID=Msa1160750-mRNA-1:exon:14253;Parent=Msa1160750-mRNA-1
chr7_4	exon	50821687	50822599	50821687	ID=Msa1160750-mRNA-1:exon:14252;Parent=Msa1160750-mRNA-1
chr7_4	five_prime_UTR	50822215	50822599	50822215	ID=Msa1160750-mRNA-1:five_prime_utr;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50821687	50822214	50821687	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50821004	50821134	50821004	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50820547	50820657	50820547	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50820300	50820408	50820300	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50819399	50819477	50819399	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50819018	50819314	50819018	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50818807	50818922	50818807	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50818198	50818305	50818198	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50818063	50818125	50818063	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50817802	50817969	50817802	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	CDS	50816695	50816832	50816695	ID=Msa1160750-mRNA-1:cds;Parent=Msa1160750-mRNA-1
chr7_4	three_prime_UTR	50816208	50816694	50816208	ID=Msa1160750-mRNA-1:three_prime_utr;Parent=Msa1160750-mRNA-1

Gene Sequence

>Msa1160750

ATGGGACTCTGTCATGGAAAACCCATTGAAACTTCACATAGAGAAAGAGAAAGAGAAAATTCAACAAATGAAGAAATTCTTCAACTTCCACCACCACCATCAAGCTCACATCCTCATGCACCAACTAAATCATCATCAAAGTTTCCATTTTTCAGTCCAAGTCCATTACCAAGTTTCTTCAAAAACTCACCTGCAAATTCAACTGTGAGTTCAAATTCAACCCCTCTTCGAACCCCTCTTCGGATCTTCAAGCGGCCCTTCCCTCCGCCGTCACCGGCGAAGCACATTCGAGCACTGCTAGCTAGAAGACATGGCTCTGTGAAGCCTAATGAAGCTACTATACCTGAAGGGAGTGAGTGTGAAGTTGGGTTGGATAAGAGTTTTGGATTTTCTAAGCATTTTGTGACGAATTTTGAGCTTGGACAAGAAGTGGGTCGTGGCCATTTTGGTTATACTTGCTCTGCTAAGGGTAAAAAAGGAAGCTTTAAGGGTCTTGATGTTGCTGTTAAAGTCATTCCTAAATCTAAGATGACAACAGCAATTGCTATCGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTAACTGGGCATAAGAATTTAGTACAATTCTACGAAGCCTATGAAGACGAAGAAAATGTTTATGTAGTTATGGAGAAAATGAAAGTTGTTAATCAAGTCATTGAATTTGGAGCTAACGTTTCATTATATCTTATGCTATACAGATTATGCAAAGGAGGCGAATTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACCCGGAAGAGGATGCCAGAGTTGTTTTGATACAGATATTAAGTGTGGTAGCTTACTGTCATCTACAGGGTGTTGTACACCGCGATCTCAAGCCAGAGAATTTTCTTTTTAGTTCCGAGGATGAAAATTCTACACTGAAGGCCATTGACTTTGGACTCTCTGATTATGTAAAGCCAGATGAGAGATTGAATGATATTGTTGGAAGTGCTTATTACGTTGCACCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATCGGTGTAATTGCTTATATTCTGTTATGTGGAAGCCGTCCTTTTTGGGCTAGGACAGAATCTGGCATATTTCGGGCTGTCCTTAAGGCAGATCCAAGTTTCGATGAAGCTCCCTGGCCTTCTTTATCGGCTGATGCAAAAGATTTTGTAAAAAGGCTGTTGAATAAAGATTACCGTAAAAGACTAACCGCATCTCAGGCTCTCAGTCATCCGTGGCTGGTGAATCACTTAGAGGATATAAAGATACCATTTGATATGATAATCCACAAGCTCATCAAAACTTACATATGCTCGTCGTCTCTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTGACATTAGTGCAGCTAGCATATCTCAGAGAACAATTTACTCTATTAGGGCCAAACAAAAGTGGGCTAATCTCTATGCAGAACTTCAAGACGGCTGTTTTAAGGAGCGCTACTGATGCCTCGAAGGATTCACGTGTCTTAGATTATGTGAACATGGTTAGTTCAATACAGTATCGAAAATTAGATTTTGAGGAATTTTGCGCTGCTGCTATAAGTGTCCATCAACTGGAGGGAATGGACACGTGGGAGCAACATGCAAGGCGTGCTTACGAGCTGTTTGAAAAGGATGGAAATAGACCAATTATGATCGAAGAGCTTGCCTCGGAACTTGGGCTTAGCCCCTCAGTACCTATTCACGTGGTACTTCAAGATTGGATAAGACACTCAGATGGAAAGCTTAGTTTCTTAGGGTTTGTCAGACTCCTGCATGGAGTTTCTTCTCGCACATTTCACAAGGCCTGA

Protein sequence

>Msa1160750

MGLCHGKPIETSHRERERENSTNEEILQLPPPPSSSHPHAPTKSSSKFPFFSPSPLPSFFKNSPANSTVSSNSTPLRTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFVTNFELGQEVGRGHFGYTCSAKGKKGSFKGLDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDEENVYVVMEKMKVVNQVIEFGANVSLYLMLYRLCKGGELLDKILSRGGKYPEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTASQALSHPWLVNHLEDIKIPFDMIIHKLIKTYICSSSLRKSALGALAKTLTLVQLAYLREQFTLLGPNKSGLISMQNFKTAVLRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMDTWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFHKA*