Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160820 | XP_003607052.1 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 8.52e-81 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160820 | sp|F4JZT3|ARR24_ARATH | 32.381 | 105 | 71 | 0 | 33 | 137 | 18 | 122 | 1.35e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160820 | G7JJU6 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 4.07e-81 | 245 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1160820 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160820 | MtrunA17_Chr6g0451941 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 7.84e-85 | 245 |
| Msa1160820 | MtrunA17_Chr8g0364781 | 31.304 | 115 | 77 | 1 | 33 | 145 | 12 | 126 | 8.60e-15 | 67.0 |
| Msa1160820 | MtrunA17_Chr7g0262351 | 30.973 | 113 | 77 | 1 | 25 | 137 | 14 | 125 | 1.22e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160820 | AT5G26594.1 | 32.381 | 105 | 71 | 0 | 33 | 137 | 18 | 122 | 1.37e-16 | 72.0 |
Find 22 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACTTTCTTTGGTTAA+AGG | 0.152490 | 7_4:-50927362 | None:intergenic |
| CTTTCTTTGGTTAAAGGTTT+TGG | 0.180470 | 7_4:-50927356 | None:intergenic |
| CTCTTTCATTTGTTTATATC+TGG | 0.180960 | 7_4:-50925891 | None:intergenic |
| TACCTGGGGTCCATTGATTA+TGG | 0.224477 | 7_4:-50926137 | None:intergenic |
| GACCAGTTCAAAACTTTCTT+TGG | 0.249411 | 7_4:-50927369 | None:intergenic |
| TAGCACCAGTCAATAAAATA+TGG | 0.283273 | 7_4:-50926081 | None:intergenic |
| GCTTCTTGAGAACTATTTGC+AGG | 0.359227 | 7_4:-50926055 | None:intergenic |
| ATCAATGCATTGCTAATAGA+TGG | 0.376367 | 7_4:+50925971 | Msa1160820:CDS |
| CATCAAATGCTTGAATCAAT+AGG | 0.381106 | 7_4:+50926019 | Msa1160820:CDS |
| TTTGATTTGTCCATAATCAA+TGG | 0.400791 | 7_4:+50926127 | Msa1160820:CDS |
| TTTCATTTGTTTATATCTGG+TGG | 0.469134 | 7_4:-50925888 | None:intergenic |
| GTGAGACAAATGCGTGCAAT+GGG | 0.477196 | 7_4:+50927245 | Msa1160820:CDS |
| AACATGAAATTCATGTGTAT+CGG | 0.526904 | 7_4:-50927403 | None:intergenic |
| AGCAATGCATTGATGAGATA+AGG | 0.528514 | 7_4:-50925962 | None:intergenic |
| TGAGACTGCAACGAGACGCT+TGG | 0.539108 | 7_4:+50925994 | Msa1160820:CDS |
| GTCCATAATCAATGGACCCC+AGG | 0.541606 | 7_4:+50926135 | Msa1160820:CDS |
| ATTGCACATACAATGGATGC+AGG | 0.592854 | 7_4:+50925863 | None:intergenic |
| GGTGAGACAAATGCGTGCAA+TGG | 0.603553 | 7_4:+50927244 | Msa1160820:CDS |
| ATGAAATTCATGTGTATCGG+AGG | 0.606494 | 7_4:-50927400 | None:intergenic |
| GGGATACAGAGCAAGATGGT+CGG | 0.640760 | 7_4:+50927266 | Msa1160820:CDS |
| AATGGGGATACAGAGCAAGA+TGG | 0.668118 | 7_4:+50927262 | Msa1160820:CDS |
| TGAGACAAATGCGTGCAATG+GGG | 0.808770 | 7_4:+50927246 | Msa1160820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAGTAGTATTAATTAA+GGG | - | chr7_4:50926965-50926984 | None:intergenic | 15.0% |
| !! | AAGTTAGTAGTATTAATTAA+GGG | - | chr7_4:50926965-50926984 | None:intergenic | 15.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | - | chr7_4:50926155-50926174 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | - | chr7_4:50926156-50926175 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | + | chr7_4:50926252-50926271 | Msa1160820:intron | 20.0% |
| !! | TAATAATTTAATAATCCCCA+TGG | + | chr7_4:50926617-50926636 | Msa1160820:intron | 20.0% |
| !! | AATAATTTAATAATCCCCAT+GGG | + | chr7_4:50926618-50926637 | Msa1160820:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr7_4:50926883-50926902 | None:intergenic | 20.0% |
| !!! | TATTAATTAAGGGTATGTTT+AGG | - | chr7_4:50926955-50926974 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+AGG | - | chr7_4:50926966-50926985 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr7_4:50927008-50927027 | Msa1160820:intron | 20.0% |
| !!! | TTTTTCACATTTCTTAAGAA+AGG | - | chr7_4:50927085-50927104 | None:intergenic | 20.0% |
| !! | TTATGAACATTACATGAAAT+GGG | - | chr7_4:50927155-50927174 | None:intergenic | 20.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | - | chr7_4:50926155-50926174 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | - | chr7_4:50926156-50926175 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | + | chr7_4:50926252-50926271 | Msa1160820:intron | 20.0% |
| !! | TAATAATTTAATAATCCCCA+TGG | + | chr7_4:50926617-50926636 | Msa1160820:intron | 20.0% |
| !! | AATAATTTAATAATCCCCAT+GGG | + | chr7_4:50926618-50926637 | Msa1160820:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr7_4:50926883-50926902 | None:intergenic | 20.0% |
| !!! | TATTAATTAAGGGTATGTTT+AGG | - | chr7_4:50926955-50926974 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+AGG | - | chr7_4:50926966-50926985 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr7_4:50927008-50927027 | Msa1160820:intron | 20.0% |
| !!! | TTTTTCACATTTCTTAAGAA+AGG | - | chr7_4:50927085-50927104 | None:intergenic | 20.0% |
| !! | TTATGAACATTACATGAAAT+GGG | - | chr7_4:50927155-50927174 | None:intergenic | 20.0% |
| ! | TTTCATTTGTTTATATCTGG+TGG | - | chr7_4:50925891-50925910 | None:intergenic | 25.0% |
| ! | CTCTTTCATTTGTTTATATC+TGG | - | chr7_4:50925894-50925913 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | + | chr7_4:50926127-50926146 | Msa1160820:CDS | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | - | chr7_4:50926154-50926173 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | - | chr7_4:50926408-50926427 | None:intergenic | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | + | chr7_4:50926689-50926708 | Msa1160820:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | - | chr7_4:50926880-50926899 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr7_4:50926884-50926903 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr7_4:50926918-50926937 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr7_4:50926919-50926938 | None:intergenic | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+TGG | + | chr7_4:50927091-50927110 | Msa1160820:intron | 25.0% |
| ! | GAAATGTGAAAAATGCAAAT+GGG | + | chr7_4:50927092-50927111 | Msa1160820:intron | 25.0% |
| ! | AAATGTGAAAAATGCAAATG+GGG | + | chr7_4:50927093-50927112 | Msa1160820:intron | 25.0% |
| ! | GTTATGAACATTACATGAAA+TGG | - | chr7_4:50927156-50927175 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | + | chr7_4:50927204-50927223 | Msa1160820:intron | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | - | chr7_4:50927211-50927230 | None:intergenic | 25.0% |
| ! | TCAAAACTTTCTTTGGTTAA+AGG | - | chr7_4:50927365-50927384 | None:intergenic | 25.0% |
| ! | TTTCATTTGTTTATATCTGG+TGG | - | chr7_4:50925891-50925910 | None:intergenic | 25.0% |
| ! | CTCTTTCATTTGTTTATATC+TGG | - | chr7_4:50925894-50925913 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | + | chr7_4:50926127-50926146 | Msa1160820:CDS | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | - | chr7_4:50926154-50926173 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | - | chr7_4:50926408-50926427 | None:intergenic | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | + | chr7_4:50926689-50926708 | Msa1160820:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | - | chr7_4:50926880-50926899 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr7_4:50926884-50926903 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr7_4:50926918-50926937 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr7_4:50926919-50926938 | None:intergenic | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+TGG | + | chr7_4:50927091-50927110 | Msa1160820:intron | 25.0% |
| ! | GAAATGTGAAAAATGCAAAT+GGG | + | chr7_4:50927092-50927111 | Msa1160820:intron | 25.0% |
| ! | AAATGTGAAAAATGCAAATG+GGG | + | chr7_4:50927093-50927112 | Msa1160820:intron | 25.0% |
| ! | GTTATGAACATTACATGAAA+TGG | - | chr7_4:50927156-50927175 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | + | chr7_4:50927204-50927223 | Msa1160820:intron | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | - | chr7_4:50927211-50927230 | None:intergenic | 25.0% |
| ! | TCAAAACTTTCTTTGGTTAA+AGG | - | chr7_4:50927365-50927384 | None:intergenic | 25.0% |
| ATCAATGCATTGCTAATAGA+TGG | + | chr7_4:50925971-50925990 | Msa1160820:CDS | 30.0% | |
| CATCAAATGCTTGAATCAAT+AGG | + | chr7_4:50926019-50926038 | Msa1160820:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | + | chr7_4:50926076-50926095 | Msa1160820:CDS | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | - | chr7_4:50926084-50926103 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | + | chr7_4:50926217-50926236 | Msa1160820:intron | 30.0% |
| !! | TTTTAAGCGAACTTTGAGTT+GGG | - | chr7_4:50926310-50926329 | None:intergenic | 30.0% |
| !! | TTTTTAAGCGAACTTTGAGT+TGG | - | chr7_4:50926311-50926330 | None:intergenic | 30.0% |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | + | chr7_4:50926544-50926563 | Msa1160820:intron | 30.0% |
| !!! | GCTTTTTTTGTTGCTTCAAT+TGG | + | chr7_4:50926748-50926767 | Msa1160820:intron | 30.0% |
| CCTACAATCTAACTAACTTA+AGG | - | chr7_4:50926802-50926821 | None:intergenic | 30.0% | |
| CCTTAAGTTAGTTAGATTGT+AGG | + | chr7_4:50926799-50926818 | Msa1160820:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | - | chr7_4:50926916-50926935 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr7_4:50926917-50926936 | None:intergenic | 30.0% | |
| AATGTGAAAAATGCAAATGG+GGG | + | chr7_4:50927094-50927113 | Msa1160820:intron | 30.0% | |
| ! | GTGGTTGTATTTTATGTAGT+TGG | + | chr7_4:50927223-50927242 | Msa1160820:intron | 30.0% |
| ! | CTTTCTTTGGTTAAAGGTTT+TGG | - | chr7_4:50927359-50927378 | None:intergenic | 30.0% |
| !!! | AACCAAAGAAAGTTTTGAAC+TGG | + | chr7_4:50927367-50927386 | Msa1160820:CDS | 30.0% |
| ATCAATGCATTGCTAATAGA+TGG | + | chr7_4:50925971-50925990 | Msa1160820:CDS | 30.0% | |
| CATCAAATGCTTGAATCAAT+AGG | + | chr7_4:50926019-50926038 | Msa1160820:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | + | chr7_4:50926076-50926095 | Msa1160820:CDS | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | - | chr7_4:50926084-50926103 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | + | chr7_4:50926217-50926236 | Msa1160820:intron | 30.0% |
| !! | TTTTAAGCGAACTTTGAGTT+GGG | - | chr7_4:50926310-50926329 | None:intergenic | 30.0% |
| !! | TTTTTAAGCGAACTTTGAGT+TGG | - | chr7_4:50926311-50926330 | None:intergenic | 30.0% |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | + | chr7_4:50926544-50926563 | Msa1160820:intron | 30.0% |
| !!! | GCTTTTTTTGTTGCTTCAAT+TGG | + | chr7_4:50926748-50926767 | Msa1160820:intron | 30.0% |
| CCTACAATCTAACTAACTTA+AGG | - | chr7_4:50926802-50926821 | None:intergenic | 30.0% | |
| CCTTAAGTTAGTTAGATTGT+AGG | + | chr7_4:50926799-50926818 | Msa1160820:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | - | chr7_4:50926916-50926935 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr7_4:50926917-50926936 | None:intergenic | 30.0% | |
| AATGTGAAAAATGCAAATGG+GGG | + | chr7_4:50927094-50927113 | Msa1160820:intron | 30.0% | |
| ! | GTGGTTGTATTTTATGTAGT+TGG | + | chr7_4:50927223-50927242 | Msa1160820:intron | 30.0% |
| ! | CTTTCTTTGGTTAAAGGTTT+TGG | - | chr7_4:50927359-50927378 | None:intergenic | 30.0% |
| !!! | AACCAAAGAAAGTTTTGAAC+TGG | + | chr7_4:50927367-50927386 | Msa1160820:CDS | 30.0% |
| ! | ATTCGCATTTTCTTCTCATC+AGG | - | chr7_4:50925917-50925936 | None:intergenic | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | - | chr7_4:50925965-50925984 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | + | chr7_4:50926255-50926274 | Msa1160820:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | + | chr7_4:50926263-50926282 | Msa1160820:intron | 35.0% | |
| !! | TTTAAGCGAACTTTGAGTTG+GGG | - | chr7_4:50926309-50926328 | None:intergenic | 35.0% |
| ! | CAATACGAGGATGTTTCTAA+TGG | - | chr7_4:50926352-50926371 | None:intergenic | 35.0% |
| TAGAAACATCCTCGTATTGA+CGG | + | chr7_4:50926353-50926372 | Msa1160820:intron | 35.0% | |
| !! | TCAACTAAGCTGATTTTCGT+TGG | + | chr7_4:50926421-50926440 | Msa1160820:intron | 35.0% |
| TTTCGCTCATGTATGATTGT+AGG | - | chr7_4:50926456-50926475 | None:intergenic | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | - | chr7_4:50926683-50926702 | None:intergenic | 35.0% |
| CAAATGGGTGGTTACATTAA+GGG | - | chr7_4:50926868-50926887 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | - | chr7_4:50926869-50926888 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | - | chr7_4:50926904-50926923 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | - | chr7_4:50926905-50926924 | None:intergenic | 35.0% | |
| GACCAGTTCAAAACTTTCTT+TGG | - | chr7_4:50927372-50927391 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | + | chr7_4:50927374-50927393 | Msa1160820:CDS | 35.0% |
| ! | ATTCGCATTTTCTTCTCATC+AGG | - | chr7_4:50925917-50925936 | None:intergenic | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | - | chr7_4:50925965-50925984 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | + | chr7_4:50926255-50926274 | Msa1160820:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | + | chr7_4:50926263-50926282 | Msa1160820:intron | 35.0% | |
| !! | TTTAAGCGAACTTTGAGTTG+GGG | - | chr7_4:50926309-50926328 | None:intergenic | 35.0% |
| ! | CAATACGAGGATGTTTCTAA+TGG | - | chr7_4:50926352-50926371 | None:intergenic | 35.0% |
| TAGAAACATCCTCGTATTGA+CGG | + | chr7_4:50926353-50926372 | Msa1160820:intron | 35.0% | |
| !! | TCAACTAAGCTGATTTTCGT+TGG | + | chr7_4:50926421-50926440 | Msa1160820:intron | 35.0% |
| TTTCGCTCATGTATGATTGT+AGG | - | chr7_4:50926456-50926475 | None:intergenic | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | - | chr7_4:50926683-50926702 | None:intergenic | 35.0% |
| CAAATGGGTGGTTACATTAA+GGG | - | chr7_4:50926868-50926887 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | - | chr7_4:50926869-50926888 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | - | chr7_4:50926904-50926923 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | - | chr7_4:50926905-50926924 | None:intergenic | 35.0% | |
| GACCAGTTCAAAACTTTCTT+TGG | - | chr7_4:50927372-50927391 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | + | chr7_4:50927374-50927393 | Msa1160820:CDS | 35.0% |
| GCTTCTTGAGAACTATTTGC+AGG | - | chr7_4:50926058-50926077 | None:intergenic | 40.0% | |
| GTCATATTTACGGTGGATCT+TGG | + | chr7_4:50926262-50926281 | Msa1160820:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | + | chr7_4:50926264-50926283 | Msa1160820:intron | 40.0% | |
| CTTCATAAAGTCGACGACAA+AGG | - | chr7_4:50926484-50926503 | None:intergenic | 40.0% | |
| ! | TTGATCTGATGGTGTAGACT+TGG | + | chr7_4:50926641-50926660 | Msa1160820:intron | 40.0% |
| ! | TGATCTGATGGTGTAGACTT+GGG | + | chr7_4:50926642-50926661 | Msa1160820:intron | 40.0% |
| CTAGAGAGGAGTAAATACCT+AGG | - | chr7_4:50926669-50926688 | None:intergenic | 40.0% | |
| CTAGGTATTTACTCCTCTCT+AGG | + | chr7_4:50926667-50926686 | Msa1160820:intron | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | + | chr7_4:50926674-50926693 | Msa1160820:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | + | chr7_4:50926707-50926726 | Msa1160820:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | - | chr7_4:50926717-50926736 | None:intergenic | 40.0% | |
| CCGATCTCATCATCAATTAG+CGG | - | chr7_4:50926778-50926797 | None:intergenic | 40.0% | |
| !! | CCGCTAATTGATGATGAGAT+CGG | + | chr7_4:50926775-50926794 | Msa1160820:intron | 40.0% |
| TGCAAATGGGGGTTACATTA+AGG | + | chr7_4:50927105-50927124 | Msa1160820:intron | 40.0% | |
| GCAAATGGGGGTTACATTAA+GGG | + | chr7_4:50927106-50927125 | Msa1160820:intron | 40.0% | |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | - | chr7_4:50927351-50927370 | None:intergenic | 40.0% |
| GCTTCTTGAGAACTATTTGC+AGG | - | chr7_4:50926058-50926077 | None:intergenic | 40.0% | |
| GTCATATTTACGGTGGATCT+TGG | + | chr7_4:50926262-50926281 | Msa1160820:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | + | chr7_4:50926264-50926283 | Msa1160820:intron | 40.0% | |
| CTTCATAAAGTCGACGACAA+AGG | - | chr7_4:50926484-50926503 | None:intergenic | 40.0% | |
| ! | TTGATCTGATGGTGTAGACT+TGG | + | chr7_4:50926641-50926660 | Msa1160820:intron | 40.0% |
| ! | TGATCTGATGGTGTAGACTT+GGG | + | chr7_4:50926642-50926661 | Msa1160820:intron | 40.0% |
| CTAGAGAGGAGTAAATACCT+AGG | - | chr7_4:50926669-50926688 | None:intergenic | 40.0% | |
| CTAGGTATTTACTCCTCTCT+AGG | + | chr7_4:50926667-50926686 | Msa1160820:intron | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | + | chr7_4:50926674-50926693 | Msa1160820:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | + | chr7_4:50926707-50926726 | Msa1160820:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | - | chr7_4:50926717-50926736 | None:intergenic | 40.0% | |
| CCGATCTCATCATCAATTAG+CGG | - | chr7_4:50926778-50926797 | None:intergenic | 40.0% | |
| !! | CCGCTAATTGATGATGAGAT+CGG | + | chr7_4:50926775-50926794 | Msa1160820:intron | 40.0% |
| TGCAAATGGGGGTTACATTA+AGG | + | chr7_4:50927105-50927124 | Msa1160820:intron | 40.0% | |
| GCAAATGGGGGTTACATTAA+GGG | + | chr7_4:50927106-50927125 | Msa1160820:intron | 40.0% | |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | - | chr7_4:50927351-50927370 | None:intergenic | 40.0% |
| ! | TACCTGGGGTCCATTGATTA+TGG | - | chr7_4:50926140-50926159 | None:intergenic | 45.0% |
| ! | AAACATCCTCGTATTGACGG+TGG | + | chr7_4:50926356-50926375 | Msa1160820:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | + | chr7_4:50926357-50926376 | Msa1160820:intron | 45.0% |
| ACACCATCAGATCAACCCAT+GGG | - | chr7_4:50926636-50926655 | None:intergenic | 45.0% | |
| TACACCATCAGATCAACCCA+TGG | - | chr7_4:50926637-50926656 | None:intergenic | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | + | chr7_4:50926726-50926745 | Msa1160820:intron | 45.0% |
| TGGTTACATTAAGGGACGGA+GGG | - | chr7_4:50926860-50926879 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | - | chr7_4:50926864-50926883 | None:intergenic | 45.0% | |
| GGGTTACATTAAGGGACAGA+GGG | + | chr7_4:50927114-50927133 | Msa1160820:intron | 45.0% | |
| GTGAGACAAATGCGTGCAAT+GGG | + | chr7_4:50927245-50927264 | Msa1160820:CDS | 45.0% | |
| TGAGACAAATGCGTGCAATG+GGG | + | chr7_4:50927246-50927265 | Msa1160820:CDS | 45.0% | |
| AATGGGGATACAGAGCAAGA+TGG | + | chr7_4:50927262-50927281 | Msa1160820:CDS | 45.0% | |
| ! | TACCTGGGGTCCATTGATTA+TGG | - | chr7_4:50926140-50926159 | None:intergenic | 45.0% |
| ! | AAACATCCTCGTATTGACGG+TGG | + | chr7_4:50926356-50926375 | Msa1160820:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | + | chr7_4:50926357-50926376 | Msa1160820:intron | 45.0% |
| ACACCATCAGATCAACCCAT+GGG | - | chr7_4:50926636-50926655 | None:intergenic | 45.0% | |
| TACACCATCAGATCAACCCA+TGG | - | chr7_4:50926637-50926656 | None:intergenic | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | + | chr7_4:50926726-50926745 | Msa1160820:intron | 45.0% |
| TGGTTACATTAAGGGACGGA+GGG | - | chr7_4:50926860-50926879 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | - | chr7_4:50926864-50926883 | None:intergenic | 45.0% | |
| GGGTTACATTAAGGGACAGA+GGG | + | chr7_4:50927114-50927133 | Msa1160820:intron | 45.0% | |
| GTGAGACAAATGCGTGCAAT+GGG | + | chr7_4:50927245-50927264 | Msa1160820:CDS | 45.0% | |
| TGAGACAAATGCGTGCAATG+GGG | + | chr7_4:50927246-50927265 | Msa1160820:CDS | 45.0% | |
| AATGGGGATACAGAGCAAGA+TGG | + | chr7_4:50927262-50927281 | Msa1160820:CDS | 45.0% | |
| GTCCATAATCAATGGACCCC+AGG | + | chr7_4:50926135-50926154 | Msa1160820:CDS | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | - | chr7_4:50926365-50926384 | None:intergenic | 50.0% | |
| !! | ATCCCCATGGGTTGATCTGA+TGG | + | chr7_4:50926630-50926649 | Msa1160820:intron | 50.0% |
| CACCATCAGATCAACCCATG+GGG | - | chr7_4:50926635-50926654 | None:intergenic | 50.0% | |
| ATGGTGTAGACTTGGGACCT+AGG | + | chr7_4:50926649-50926668 | Msa1160820:intron | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | + | chr7_4:50926710-50926729 | Msa1160820:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | - | chr7_4:50926861-50926880 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGGGACAG+AGG | + | chr7_4:50927113-50927132 | Msa1160820:intron | 50.0% | |
| GGTGAGACAAATGCGTGCAA+TGG | + | chr7_4:50927244-50927263 | Msa1160820:CDS | 50.0% | |
| GGGATACAGAGCAAGATGGT+CGG | + | chr7_4:50927266-50927285 | Msa1160820:CDS | 50.0% | |
| GTCCATAATCAATGGACCCC+AGG | + | chr7_4:50926135-50926154 | Msa1160820:CDS | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | - | chr7_4:50926365-50926384 | None:intergenic | 50.0% | |
| !! | ATCCCCATGGGTTGATCTGA+TGG | + | chr7_4:50926630-50926649 | Msa1160820:intron | 50.0% |
| CACCATCAGATCAACCCATG+GGG | - | chr7_4:50926635-50926654 | None:intergenic | 50.0% | |
| ATGGTGTAGACTTGGGACCT+AGG | + | chr7_4:50926649-50926668 | Msa1160820:intron | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | + | chr7_4:50926710-50926729 | Msa1160820:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | - | chr7_4:50926861-50926880 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGGGACAG+AGG | + | chr7_4:50927113-50927132 | Msa1160820:intron | 50.0% | |
| GGTGAGACAAATGCGTGCAA+TGG | + | chr7_4:50927244-50927263 | Msa1160820:CDS | 50.0% | |
| GGGATACAGAGCAAGATGGT+CGG | + | chr7_4:50927266-50927285 | Msa1160820:CDS | 50.0% | |
| TGAGACTGCAACGAGACGCT+TGG | + | chr7_4:50925994-50926013 | Msa1160820:CDS | 55.0% | |
| TGAGACTGCAACGAGACGCT+TGG | + | chr7_4:50925994-50926013 | Msa1160820:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 50925875 | 50927415 | 50925875 | ID=Msa1160820;Name=Msa1160820 |
| chr7_4 | mRNA | 50925875 | 50927415 | 50925875 | ID=Msa1160820-mRNA-1;Parent=Msa1160820;Name=Msa1160820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|151 |
| chr7_4 | exon | 50925875 | 50926156 | 50925875 | ID=Msa1160820-mRNA-1:exon:14266;Parent=Msa1160820-mRNA-1 |
| chr7_4 | exon | 50927242 | 50927415 | 50927242 | ID=Msa1160820-mRNA-1:exon:14267;Parent=Msa1160820-mRNA-1 |
| chr7_4 | CDS | 50925875 | 50926156 | 50925875 | ID=Msa1160820-mRNA-1:cds;Parent=Msa1160820-mRNA-1 |
| chr7_4 | CDS | 50927242 | 50927415 | 50927242 | ID=Msa1160820-mRNA-1:cds;Parent=Msa1160820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
