AlfalfaGEDB | Msa1161190

M. sativa cultivar zhongmu-4 / Msa1161190

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161190	XP_039683935.1	90.598	234	18	2	1	230	1	234	8.27e-146	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161190	A0A396H4J8	90.598	234	18	2	1	230	1	234	3.95e-146	416

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TFs/TRs:

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Gene ID	Type	Classification
Msa1161190	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161190	MtrunA17_Chr7g0255511	90.598	234	18	2	1	230	1	234	7.61e-150	416
Msa1161190	MtrunA17_Chr7g0225091	80.342	234	28	3	1	230	1	220	2.72e-131	369
Msa1161190	MtrunA17_Chr7g0225121	77.350	234	27	3	1	230	1	212	6.05e-126	355
Msa1161190	MtrunA17_Chr7g0222361	79.208	202	40	2	31	230	1	202	1.64e-117	333
Msa1161190	MtrunA17_Chr7g0222371	76.033	121	24	3	19	134	1	121	5.24e-62	190
Msa1161190	MtrunA17_Chr1g0149811	33.140	172	96	6	76	230	93	262	1.65e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161190	AT1G66140.1	29.121	182	99	4	76	230	82	260	4.56e-11	61.2

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Find 45 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATGATTCAGCATGC+AGG	0.425567	7_4:+51421760	Msa1161190:CDS
AAGAAATGGAGAAATTTCTT+TGG	0.320928	7_4:-51421485	None:intergenic
AATATGTCTGAGATTGAAGT+TGG	0.464395	7_4:+51421886	Msa1161190:CDS
AATTACTCAAATGGTGATCA+AGG	0.411277	7_4:+51421676	Msa1161190:CDS
ACAATATGATTCAGCATGCA+GGG	0.561522	7_4:+51421761	Msa1161190:CDS
ACCATCTCTCCATTCCATAT+GGG	0.464694	7_4:+51421712	Msa1161190:CDS
ACTAGTCCACAGGCATTAGG+TGG	0.661075	7_4:+51421583	Msa1161190:CDS
AGAAATTTCTTTGGAAGAAT+CGG	0.402846	7_4:-51421476	None:intergenic
AGACAAAGAGACTCAAGAGG+AGG	0.673262	7_4:+51421954	Msa1161190:CDS
AGTAGCCAATTTGAAGATGA+TGG	0.452167	7_4:+51421357	Msa1161190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATTCTGAGTTTCAACAT+GGG	-	chr7_4:51421422-51421441	None:intergenic	30.0%
TTGAATTCTGAGTTTCAACA+TGG	-	chr7_4:51421423-51421442	None:intergenic	30.0%
ATGTTGAAACTCAGAATTCA+AGG	+	chr7_4:51421422-51421441	Msa1161190:CDS	30.0%
TAGAGAGAAGTCTCAAAAAA+AGG	+	chr7_4:51421626-51421645	Msa1161190:CDS	30.0%
GCTTGGATAAATTACTCAAA+TGG	+	chr7_4:51421667-51421686	Msa1161190:CDS	30.0%
AATTACTCAAATGGTGATCA+AGG	+	chr7_4:51421676-51421695	Msa1161190:CDS	30.0%
ATTACTCAAATGGTGATCAA+GGG	+	chr7_4:51421677-51421696	Msa1161190:CDS	30.0%
AGTAGCCAATTTGAAGATGA+TGG	+	chr7_4:51421357-51421376	Msa1161190:CDS	35.0%
GGAAAATCAGAACAAGAGAA+AGG	+	chr7_4:51421378-51421397	Msa1161190:CDS	35.0%
TTGGATTCATTGTTGATCAC+AGG	+	chr7_4:51421512-51421531	Msa1161190:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	51421319	51422011	51421319	ID=Msa1161190;Name=Msa1161190
chr7_4	mRNA	51421319	51422011	51421319	ID=Msa1161190-mRNA-1;Parent=Msa1161190;Name=Msa1161190-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|230
chr7_4	exon	51421319	51422011	51421319	ID=Msa1161190-mRNA-1:exon:14512;Parent=Msa1161190-mRNA-1
chr7_4	CDS	51421319	51422011	51421319	ID=Msa1161190-mRNA-1:cds;Parent=Msa1161190-mRNA-1

Gene Sequence

>Msa1161190

ATGTGTAACAAGGGGAAGGAGAAGGTGAATGAAGAATCAGTAGCCAATTTGAAGATGATGGAAAATCAGAACAAGAGAAAGGCAATCGTGCTGGAAGAATCCCATGTTGAAACTCAGAATTCAAGGACTCCCCAAAAAGATGTTGAAGAAGAATCAACCGATTCTTCCAAAGAAATTTCTCCATTTCTTCTTTTTGGATTCATTGTTGATCACAGGAAAGGAATTCAAAAGGCTTACTCGTGCAAATTTTGTAGCAGAAAGTTCACTAGTCCACAGGCATTAGGTGGTCATCAAAATTCTCACAAATTAGAGAGAAGTCTCAAAAAAAGGATCCAAGCTTTTAACAATGCTTGGATAAATTACTCAAATGGTGATCAAGGGATAAGTCTAAACACCATCTCTCCATTCCATATGGGGTGTGGATATCAATATTGTGGATTTAACAATATGATTCAGCATGCAGGGTCATCAAACTTTTATGCAGGGAATTTGTATGGTGCATTGCAGCATATTTCAGAGATAGATGAAGCAGATGAAGCTAATCAAAGCATAATGAGTCAAAAAGTTAATATGTCTGAGATTGAAGTTGGTTCAGTTTCAGAGGGAGGAGCTGTTAGTGATGAAGTTGATCAGGAAGACAAAGAGACTCAAGAGGAGGAAGCAACCAAGATTGATTTGACCCTTAAGCTTTAA

Protein sequence

>Msa1161190

MCNKGKEKVNEESVANLKMMENQNKRKAIVLEESHVETQNSRTPQKDVEEESTDSSKEISPFLLFGFIVDHRKGIQKAYSCKFCSRKFTSPQALGGHQNSHKLERSLKKRIQAFNNAWINYSNGDQGISLNTISPFHMGCGYQYCGFNNMIQHAGSSNFYAGNLYGALQHISEIDEADEANQSIMSQKVNMSEIEVGSVSEGGAVSDEVDQEDKETQEEEATKIDLTLKL*