Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161200 | XP_039683934.1 | 92.481 | 266 | 15 | 3 | 1 | 264 | 1 | 263 | 2.32e-162 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161200 | A0A396H587 | 92.549 | 255 | 14 | 3 | 12 | 264 | 1 | 252 | 3.37e-154 | 441 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1161200 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161200 | MtrunA17_Chr7g0255491 | 92.549 | 255 | 14 | 3 | 12 | 264 | 1 | 252 | 6.49e-158 | 441 |
| Msa1161200 | MtrunA17_Chr3g0081141 | 28.704 | 216 | 138 | 7 | 78 | 287 | 98 | 303 | 1.54e-14 | 72.4 |
| Msa1161200 | MtrunA17_Chr2g0310101 | 40.816 | 98 | 51 | 4 | 78 | 168 | 59 | 156 | 3.95e-14 | 70.1 |
| Msa1161200 | MtrunA17_Chr7g0239711 | 41.111 | 90 | 46 | 3 | 76 | 158 | 55 | 144 | 1.45e-12 | 65.5 |
| Msa1161200 | MtrunA17_Chr3g0079671 | 27.948 | 229 | 125 | 8 | 78 | 287 | 98 | 305 | 4.41e-12 | 65.5 |
| Msa1161200 | MtrunA17_Chr7g0224221 | 44.286 | 70 | 29 | 2 | 78 | 137 | 148 | 217 | 6.07e-12 | 65.5 |
| Msa1161200 | MtrunA17_Chr5g0396031 | 40.449 | 89 | 35 | 3 | 77 | 157 | 45 | 123 | 6.62e-12 | 65.5 |
| Msa1161200 | MtrunA17_Chr3g0081131 | 28.899 | 218 | 128 | 9 | 78 | 287 | 98 | 296 | 9.94e-12 | 64.3 |
| Msa1161200 | MtrunA17_Chr1g0161901 | 40.000 | 105 | 49 | 5 | 11 | 110 | 34 | 129 | 4.46e-11 | 62.0 |
| Msa1161200 | MtrunA17_Chr8g0376021 | 52.727 | 55 | 24 | 1 | 58 | 110 | 40 | 94 | 5.97e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161200 | AT5G25160.1 | 38.053 | 113 | 52 | 3 | 70 | 182 | 51 | 145 | 2.37e-11 | 62.8 |
Find 99 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGGATGAATAATTTA+TGG | 0.162779 | 7_4:+51426748 | Msa1161200:CDS |
| TCCCTTGCAACATCACAATT+TGG | 0.176085 | 7_4:+51426732 | Msa1161200:CDS |
| TGAACAATTCCTTGCCTTCT+TGG | 0.192209 | 7_4:+51426619 | Msa1161200:CDS |
| TGGCTTGGTGGTTCATCTTC+TGG | 0.227050 | 7_4:+51426639 | Msa1161200:CDS |
| CGTGATGCAGGAGGTGTATT+TGG | 0.246247 | 7_4:-51426684 | None:intergenic |
| TCAGAAGATGCCTCAGAAAT+TGG | 0.265731 | 7_4:-51426858 | None:intergenic |
| CCCACAGTGTTTGATCTTTG+TGG | 0.295932 | 7_4:-51426801 | None:intergenic |
| CTGTCATCTTCATCTTCAAT+AGG | 0.321326 | 7_4:-51426924 | None:intergenic |
| TTGGAGAATGGTGAGCATTC+AGG | 0.322095 | 7_4:+51426297 | Msa1161200:CDS |
| CAAGTTCAGTTCCTCCTCAT+TGG | 0.324355 | 7_4:-51426961 | None:intergenic |
| AATTCCTTGCCTTCTTGGCT+TGG | 0.353374 | 7_4:+51426624 | Msa1161200:CDS |
| GAGGTTGGTGGTGATGTCTT+TGG | 0.357363 | 7_4:-51426207 | None:intergenic |
| ATTTGGGATGAATAATTTAT+GGG | 0.357825 | 7_4:+51426749 | Msa1161200:CDS |
| AAGTTCAGTTCCTCCTCATT+GGG | 0.363891 | 7_4:-51426960 | None:intergenic |
| TCCTTGCCTTCTTGGCTTGG+TGG | 0.368207 | 7_4:+51426627 | Msa1161200:CDS |
| CTCACCATTCTCCAAGGGTT+TGG | 0.371444 | 7_4:-51426289 | None:intergenic |
| CCCTTGCAACATCACAATTT+GGG | 0.371646 | 7_4:+51426733 | Msa1161200:CDS |
| TTCACTTGCGGCGCAGGTGG+AGG | 0.390432 | 7_4:-51426345 | None:intergenic |
| AAGATCAAACACTGTGGGTT+TGG | 0.398899 | 7_4:+51426806 | Msa1161200:CDS |
| GGTTCATCTTCTGGTGGCTA+TGG | 0.403832 | 7_4:+51426648 | Msa1161200:CDS |
| TGTTCACATGGGAACCAATT+GGG | 0.426738 | 7_4:-51426602 | None:intergenic |
| TTCCCCACTTCTCAAGCGCT+TGG | 0.427846 | 7_4:+51426399 | Msa1161200:CDS |
| GGATATTAGATCGATACCTT+AGG | 0.431642 | 7_4:-51426503 | None:intergenic |
| GCGCAAAATGATGGAGGATT+CGG | 0.431644 | 7_4:+51426158 | Msa1161200:CDS |
| AATTCCTTCACTTGCGGCGC+AGG | 0.435850 | 7_4:-51426351 | None:intergenic |
| TCCTTCACTTGCGGCGCAGG+TGG | 0.438683 | 7_4:-51426348 | None:intergenic |
| TTGTTCACATGGGAACCAAT+TGG | 0.439864 | 7_4:-51426603 | None:intergenic |
| CAATGAGGAGGAACTGAACT+TGG | 0.445260 | 7_4:+51426962 | Msa1161200:CDS |
| GGAGAGCTTGAAAATTGATA+AGG | 0.446609 | 7_4:-51426534 | None:intergenic |
| AATTTCTGAGGCATCTTCTG+AGG | 0.448060 | 7_4:+51426860 | Msa1161200:CDS |
| GATTTCTTGACCTTGAGGCT+TGG | 0.452474 | 7_4:+51426246 | Msa1161200:CDS |
| GCTCACGCTTATGAGCGTTT+TGG | 0.454295 | 7_4:-51426428 | None:intergenic |
| TTCTTGACCTTGAGGCTTGG+CGG | 0.462476 | 7_4:+51426249 | Msa1161200:CDS |
| CCCACTTCTCAAGCGCTTGG+AGG | 0.464114 | 7_4:+51426402 | Msa1161200:CDS |
| TCATCTTCTGGTGGCTATGG+AGG | 0.469395 | 7_4:+51426651 | Msa1161200:CDS |
| CCAACCTCTGGATCGGATGC+TGG | 0.471452 | 7_4:+51426222 | Msa1161200:CDS |
| ATTCTCCAAGGGTTTGGAAG+TGG | 0.473353 | 7_4:-51426283 | None:intergenic |
| GAGAGCTTGAAAATTGATAA+GGG | 0.474183 | 7_4:-51426533 | None:intergenic |
| AAACCTCAAGCGCAAAATGA+TGG | 0.477017 | 7_4:+51426149 | Msa1161200:CDS |
| CTTGAAAATTGATAAGGGTA+TGG | 0.487010 | 7_4:-51426528 | None:intergenic |
| GGCATCACAAATCGTGATGC+AGG | 0.491997 | 7_4:-51426696 | None:intergenic |
| TTCGGAGCAAGAGTCGAAAT+CGG | 0.492293 | 7_4:+51426176 | Msa1161200:CDS |
| GTGTTTGATCTTTGTGGAGT+TGG | 0.498368 | 7_4:-51426795 | None:intergenic |
| AAGACATCACCACCAACCTC+TGG | 0.499816 | 7_4:+51426210 | Msa1161200:CDS |
| GCTAGCCTGTCCAACCCAAT+TGG | 0.500395 | 7_4:+51426588 | Msa1161200:CDS |
| TTCTCCAAGGGTTTGGAAGT+GGG | 0.501108 | 7_4:-51426282 | None:intergenic |
| GATATTAGATCGATACCTTA+GGG | 0.503430 | 7_4:-51426502 | None:intergenic |
| CATCTTCTGGTGGCTATGGA+GGG | 0.505349 | 7_4:+51426652 | Msa1161200:CDS |
| GGGAACCAATTGGGTTGGAC+AGG | 0.508826 | 7_4:-51426593 | None:intergenic |
| ACTTCCAAACCCTTGGAGAA+TGG | 0.510882 | 7_4:+51426285 | Msa1161200:CDS |
| ATTTCTGAGGCATCTTCTGA+GGG | 0.511868 | 7_4:+51426861 | Msa1161200:CDS |
| TCCTCCAAGCGCTTGAGAAG+TGG | 0.512717 | 7_4:-51426403 | None:intergenic |
| GATGAACCACCAAGCCAAGA+AGG | 0.518609 | 7_4:-51426633 | None:intergenic |
| CACATGGGAACCAATTGGGT+TGG | 0.519779 | 7_4:-51426598 | None:intergenic |
| GCAAGAGTCGAAATCGGAGA+AGG | 0.519914 | 7_4:+51426182 | Msa1161200:CDS |
| AAATCCCACTTCCAAACCCT+TGG | 0.521354 | 7_4:+51426278 | Msa1161200:CDS |
| TCCCAAATTGTGATGTTGCA+AGG | 0.525406 | 7_4:-51426734 | None:intergenic |
| AAAATTGATAAGGGTATGGA+AGG | 0.527390 | 7_4:-51426524 | None:intergenic |
| GAAGATGCCTCAGAAATTGG+AGG | 0.529710 | 7_4:-51426855 | None:intergenic |
| CTGGCGATTTCTTGACCTTG+AGG | 0.533323 | 7_4:+51426241 | Msa1161200:CDS |
| TCCACCTGCGCCGCAAGTGA+AGG | 0.535880 | 7_4:+51426347 | Msa1161200:CDS |
| TTGACCTTGAGGCTTGGCGG+TGG | 0.537816 | 7_4:+51426252 | Msa1161200:CDS |
| CCTCCAAGCGCTTGAGAAGT+GGG | 0.545861 | 7_4:-51426402 | None:intergenic |
| TACGGAAATATGAATACCCT+TGG | 0.547864 | 7_4:-51426563 | None:intergenic |
| ATGAATAATTTATGGGGTGG+AGG | 0.548808 | 7_4:+51426756 | Msa1161200:CDS |
| GGGATGAATAATTTATGGGG+TGG | 0.553703 | 7_4:+51426753 | Msa1161200:CDS |
| CTTGGTGGTTCATCTTCTGG+TGG | 0.555595 | 7_4:+51426642 | Msa1161200:CDS |
| AATGGAAGAACAAAGGAGAG+AGG | 0.557192 | 7_4:+51426464 | Msa1161200:CDS |
| TATGAATACCCTTGGTAGTG+TGG | 0.561783 | 7_4:-51426555 | None:intergenic |
| TGAATGCTCACCATTCTCCA+AGG | 0.576662 | 7_4:-51426295 | None:intergenic |
| ACCACCAAGCCAAGAAGGCA+AGG | 0.577515 | 7_4:-51426628 | None:intergenic |
| ATGTGATCGATTCAGCCCTA+AGG | 0.581100 | 7_4:+51426487 | Msa1161200:CDS |
| CAAGCTCTCCACACTACCAA+GGG | 0.581296 | 7_4:+51426547 | Msa1161200:CDS |
| CAAGAGAATTCCTTCACTTG+CGG | 0.584375 | 7_4:-51426357 | None:intergenic |
| ATCACCACCAACCTCTGGAT+CGG | 0.589780 | 7_4:+51426215 | Msa1161200:CDS |
| GAATGCTCACCATTCTCCAA+GGG | 0.590384 | 7_4:-51426294 | None:intergenic |
| CCAGCATCCGATCCAGAGGT+TGG | 0.592460 | 7_4:-51426222 | None:intergenic |
| CCCAAATTGTGATGTTGCAA+GGG | 0.596255 | 7_4:-51426733 | None:intergenic |
| TCAAGCTCTCCACACTACCA+AGG | 0.596295 | 7_4:+51426546 | Msa1161200:CDS |
| TTTGGGATGAATAATTTATG+GGG | 0.599177 | 7_4:+51426750 | Msa1161200:CDS |
| TGTGCCACCGCCAAGCCTCA+AGG | 0.601323 | 7_4:-51426256 | None:intergenic |
| AAGATGCCTCAGAAATTGGA+GGG | 0.602431 | 7_4:-51426854 | None:intergenic |
| GCATCCGATCCAGAGGTTGG+TGG | 0.602933 | 7_4:-51426219 | None:intergenic |
| AAGGCAAGGAATTGTTCACA+TGG | 0.612872 | 7_4:-51426614 | None:intergenic |
| AGATGAAGATGACAGAAATG+AGG | 0.616572 | 7_4:+51426932 | Msa1161200:CDS |
| GGTTGGACAGGCTAGCACTA+CGG | 0.617508 | 7_4:-51426581 | None:intergenic |
| ATCGCCAGCATCCGATCCAG+AGG | 0.630563 | 7_4:-51426226 | None:intergenic |
| CCACAAAGATCAAACACTGT+GGG | 0.631128 | 7_4:+51426801 | Msa1161200:CDS |
| CTCCAAGCGCTTGAGAAGTG+GGG | 0.636012 | 7_4:-51426401 | None:intergenic |
| TCAAACCCCTCCAATTTCTG+AGG | 0.642241 | 7_4:+51426848 | Msa1161200:CDS |
| AGATGCCTCAGAAATTGGAG+GGG | 0.652285 | 7_4:-51426853 | None:intergenic |
| TGAGGCTAATCCCAATGAGG+AGG | 0.655080 | 7_4:+51426950 | Msa1161200:CDS |
| CCTCAAGCGCAAAATGATGG+AGG | 0.656497 | 7_4:+51426152 | Msa1161200:CDS |
| ATCACAAATCGTGATGCAGG+AGG | 0.664503 | 7_4:-51426693 | None:intergenic |
| GCAAGGGATGAATTTGACAA+TGG | 0.667223 | 7_4:-51426717 | None:intergenic |
| TCTTCAATAGGATCATGAGA+AGG | 0.673021 | 7_4:-51426912 | None:intergenic |
| AAATGAGGCTAATCCCAATG+AGG | 0.702908 | 7_4:+51426947 | Msa1161200:CDS |
| AGGCAAGGAATTGTTCACAT+GGG | 0.705162 | 7_4:-51426613 | None:intergenic |
| TCCACAAAGATCAAACACTG+TGG | 0.713784 | 7_4:+51426800 | Msa1161200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7_4:51426748-51426767 | Msa1161200:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7_4:51426749-51426768 | Msa1161200:CDS | 20.0% |
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7_4:51426748-51426767 | Msa1161200:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7_4:51426749-51426768 | Msa1161200:CDS | 20.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7_4:51426457-51426476 | Msa1161200:CDS | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7_4:51426750-51426769 | Msa1161200:CDS | 25.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7_4:51426457-51426476 | Msa1161200:CDS | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7_4:51426750-51426769 | Msa1161200:CDS | 25.0% |
| GATATTAGATCGATACCTTA+GGG | - | chr7_4:51426505-51426524 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7_4:51426527-51426546 | None:intergenic | 30.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7_4:51426531-51426550 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7_4:51426536-51426555 | None:intergenic | 30.0% | |
| GATATTAGATCGATACCTTA+GGG | - | chr7_4:51426505-51426524 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7_4:51426527-51426546 | None:intergenic | 30.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7_4:51426531-51426550 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7_4:51426536-51426555 | None:intergenic | 30.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7_4:51426446-51426465 | Msa1161200:CDS | 35.0% | |
| GGATATTAGATCGATACCTT+AGG | - | chr7_4:51426506-51426525 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7_4:51426537-51426556 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7_4:51426566-51426585 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7_4:51426756-51426775 | Msa1161200:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7_4:51426915-51426934 | None:intergenic | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | - | chr7_4:51426927-51426946 | None:intergenic | 35.0% | |
| AGATGAAGATGACAGAAATG+AGG | + | chr7_4:51426932-51426951 | Msa1161200:CDS | 35.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7_4:51426446-51426465 | Msa1161200:CDS | 35.0% | |
| GGATATTAGATCGATACCTT+AGG | - | chr7_4:51426506-51426525 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7_4:51426537-51426556 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7_4:51426566-51426585 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7_4:51426756-51426775 | Msa1161200:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7_4:51426915-51426934 | None:intergenic | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | - | chr7_4:51426927-51426946 | None:intergenic | 35.0% | |
| AGATGAAGATGACAGAAATG+AGG | + | chr7_4:51426932-51426951 | Msa1161200:CDS | 35.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7_4:51426149-51426168 | Msa1161200:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7_4:51426360-51426379 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7_4:51426464-51426483 | Msa1161200:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7_4:51426558-51426577 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | - | chr7_4:51426605-51426624 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7_4:51426606-51426625 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7_4:51426616-51426635 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7_4:51426617-51426636 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7_4:51426619-51426638 | Msa1161200:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAA+TGG | - | chr7_4:51426720-51426739 | None:intergenic | 40.0% | |
| TCCCTTGCAACATCACAATT+TGG | + | chr7_4:51426732-51426751 | Msa1161200:CDS | 40.0% | |
| CCCAAATTGTGATGTTGCAA+GGG | - | chr7_4:51426736-51426755 | None:intergenic | 40.0% | |
| CCCTTGCAACATCACAATTT+GGG | + | chr7_4:51426733-51426752 | Msa1161200:CDS | 40.0% | |
| TCCCAAATTGTGATGTTGCA+AGG | - | chr7_4:51426737-51426756 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7_4:51426753-51426772 | Msa1161200:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7_4:51426798-51426817 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7_4:51426800-51426819 | Msa1161200:CDS | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7_4:51426801-51426820 | Msa1161200:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7_4:51426806-51426825 | Msa1161200:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7_4:51426857-51426876 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7_4:51426861-51426880 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7_4:51426860-51426879 | Msa1161200:CDS | 40.0% |
| !! | ATTTCTGAGGCATCTTCTGA+GGG | + | chr7_4:51426861-51426880 | Msa1161200:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | + | chr7_4:51426947-51426966 | Msa1161200:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | - | chr7_4:51426963-51426982 | None:intergenic | 40.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7_4:51426149-51426168 | Msa1161200:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7_4:51426360-51426379 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7_4:51426464-51426483 | Msa1161200:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7_4:51426558-51426577 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | - | chr7_4:51426605-51426624 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7_4:51426606-51426625 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7_4:51426616-51426635 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7_4:51426617-51426636 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7_4:51426619-51426638 | Msa1161200:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAA+TGG | - | chr7_4:51426720-51426739 | None:intergenic | 40.0% | |
| TCCCTTGCAACATCACAATT+TGG | + | chr7_4:51426732-51426751 | Msa1161200:CDS | 40.0% | |
| CCCAAATTGTGATGTTGCAA+GGG | - | chr7_4:51426736-51426755 | None:intergenic | 40.0% | |
| CCCTTGCAACATCACAATTT+GGG | + | chr7_4:51426733-51426752 | Msa1161200:CDS | 40.0% | |
| TCCCAAATTGTGATGTTGCA+AGG | - | chr7_4:51426737-51426756 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7_4:51426753-51426772 | Msa1161200:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7_4:51426798-51426817 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7_4:51426800-51426819 | Msa1161200:CDS | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7_4:51426801-51426820 | Msa1161200:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7_4:51426806-51426825 | Msa1161200:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7_4:51426857-51426876 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7_4:51426861-51426880 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7_4:51426860-51426879 | Msa1161200:CDS | 40.0% |
| !! | ATTTCTGAGGCATCTTCTGA+GGG | + | chr7_4:51426861-51426880 | Msa1161200:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | + | chr7_4:51426947-51426966 | Msa1161200:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | - | chr7_4:51426963-51426982 | None:intergenic | 40.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7_4:51426158-51426177 | Msa1161200:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7_4:51426176-51426195 | Msa1161200:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7_4:51426246-51426265 | Msa1161200:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7_4:51426278-51426297 | Msa1161200:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7_4:51426285-51426304 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7_4:51426286-51426305 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7_4:51426285-51426304 | Msa1161200:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7_4:51426297-51426316 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7_4:51426298-51426317 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7_4:51426297-51426316 | Msa1161200:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7_4:51426487-51426506 | Msa1161200:CDS | 45.0% |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7_4:51426624-51426643 | Msa1161200:CDS | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7_4:51426696-51426715 | None:intergenic | 45.0% | |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7_4:51426804-51426823 | None:intergenic | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7_4:51426848-51426867 | Msa1161200:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7_4:51426856-51426875 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7_4:51426858-51426877 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | - | chr7_4:51426964-51426983 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | + | chr7_4:51426962-51426981 | Msa1161200:CDS | 45.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7_4:51426158-51426177 | Msa1161200:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7_4:51426176-51426195 | Msa1161200:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7_4:51426246-51426265 | Msa1161200:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7_4:51426278-51426297 | Msa1161200:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7_4:51426285-51426304 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7_4:51426286-51426305 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7_4:51426285-51426304 | Msa1161200:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7_4:51426297-51426316 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7_4:51426298-51426317 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7_4:51426297-51426316 | Msa1161200:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7_4:51426487-51426506 | Msa1161200:CDS | 45.0% |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7_4:51426624-51426643 | Msa1161200:CDS | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7_4:51426696-51426715 | None:intergenic | 45.0% | |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7_4:51426804-51426823 | None:intergenic | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7_4:51426848-51426867 | Msa1161200:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7_4:51426856-51426875 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7_4:51426858-51426877 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | - | chr7_4:51426964-51426983 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | + | chr7_4:51426962-51426981 | Msa1161200:CDS | 45.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7_4:51426155-51426174 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7_4:51426152-51426171 | Msa1161200:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7_4:51426182-51426201 | Msa1161200:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7_4:51426210-51426229 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7_4:51426210-51426229 | Msa1161200:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7_4:51426215-51426234 | Msa1161200:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7_4:51426241-51426260 | Msa1161200:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7_4:51426249-51426268 | Msa1161200:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7_4:51426292-51426311 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7_4:51426431-51426450 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7_4:51426546-51426565 | Msa1161200:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7_4:51426547-51426566 | Msa1161200:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7_4:51426601-51426620 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7_4:51426636-51426655 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | + | chr7_4:51426639-51426658 | Msa1161200:CDS | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | + | chr7_4:51426642-51426661 | Msa1161200:CDS | 50.0% |
| GGTTCATCTTCTGGTGGCTA+TGG | + | chr7_4:51426648-51426667 | Msa1161200:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | + | chr7_4:51426651-51426670 | Msa1161200:CDS | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | + | chr7_4:51426652-51426671 | Msa1161200:CDS | 50.0% | |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7_4:51426687-51426706 | None:intergenic | 50.0% |
| GGCATCACAAATCGTGATGC+AGG | - | chr7_4:51426699-51426718 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | + | chr7_4:51426950-51426969 | Msa1161200:CDS | 50.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7_4:51426155-51426174 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7_4:51426152-51426171 | Msa1161200:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7_4:51426182-51426201 | Msa1161200:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7_4:51426210-51426229 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7_4:51426210-51426229 | Msa1161200:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7_4:51426215-51426234 | Msa1161200:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7_4:51426241-51426260 | Msa1161200:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7_4:51426249-51426268 | Msa1161200:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7_4:51426292-51426311 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7_4:51426431-51426450 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7_4:51426546-51426565 | Msa1161200:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7_4:51426547-51426566 | Msa1161200:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7_4:51426601-51426620 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7_4:51426636-51426655 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | + | chr7_4:51426639-51426658 | Msa1161200:CDS | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | + | chr7_4:51426642-51426661 | Msa1161200:CDS | 50.0% |
| GGTTCATCTTCTGGTGGCTA+TGG | + | chr7_4:51426648-51426667 | Msa1161200:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | + | chr7_4:51426651-51426670 | Msa1161200:CDS | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | + | chr7_4:51426652-51426671 | Msa1161200:CDS | 50.0% | |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7_4:51426687-51426706 | None:intergenic | 50.0% |
| GGCATCACAAATCGTGATGC+AGG | - | chr7_4:51426699-51426718 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | + | chr7_4:51426950-51426969 | Msa1161200:CDS | 50.0% | |
| AATTCCTTCACTTGCGGCGC+AGG | - | chr7_4:51426354-51426373 | None:intergenic | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7_4:51426399-51426418 | Msa1161200:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7_4:51426404-51426423 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7_4:51426405-51426424 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7_4:51426406-51426425 | None:intergenic | 55.0% | |
| GGTTGGACAGGCTAGCACTA+CGG | - | chr7_4:51426584-51426603 | None:intergenic | 55.0% | |
| ! | GCTAGCCTGTCCAACCCAAT+TGG | + | chr7_4:51426588-51426607 | Msa1161200:CDS | 55.0% |
| !! | GGGAACCAATTGGGTTGGAC+AGG | - | chr7_4:51426596-51426615 | None:intergenic | 55.0% |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7_4:51426627-51426646 | Msa1161200:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7_4:51426631-51426650 | None:intergenic | 55.0% | |
| AATTCCTTCACTTGCGGCGC+AGG | - | chr7_4:51426354-51426373 | None:intergenic | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7_4:51426399-51426418 | Msa1161200:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7_4:51426404-51426423 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7_4:51426405-51426424 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7_4:51426406-51426425 | None:intergenic | 55.0% | |
| GGTTGGACAGGCTAGCACTA+CGG | - | chr7_4:51426584-51426603 | None:intergenic | 55.0% | |
| ! | GCTAGCCTGTCCAACCCAAT+TGG | + | chr7_4:51426588-51426607 | Msa1161200:CDS | 55.0% |
| !! | GGGAACCAATTGGGTTGGAC+AGG | - | chr7_4:51426596-51426615 | None:intergenic | 55.0% |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7_4:51426627-51426646 | Msa1161200:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7_4:51426631-51426650 | None:intergenic | 55.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7_4:51426222-51426241 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7_4:51426225-51426244 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7_4:51426222-51426241 | Msa1161200:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7_4:51426229-51426248 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7_4:51426252-51426271 | Msa1161200:CDS | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7_4:51426402-51426421 | Msa1161200:CDS | 60.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7_4:51426222-51426241 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7_4:51426225-51426244 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7_4:51426222-51426241 | Msa1161200:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7_4:51426229-51426248 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7_4:51426252-51426271 | Msa1161200:CDS | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7_4:51426402-51426421 | Msa1161200:CDS | 60.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7_4:51426259-51426278 | None:intergenic | 65.0% | |
| TTCACTTGCGGCGCAGGTGG+AGG | - | chr7_4:51426348-51426367 | None:intergenic | 65.0% | |
| TCCACCTGCGCCGCAAGTGA+AGG | + | chr7_4:51426347-51426366 | Msa1161200:CDS | 65.0% | |
| TCCTTCACTTGCGGCGCAGG+TGG | - | chr7_4:51426351-51426370 | None:intergenic | 65.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7_4:51426259-51426278 | None:intergenic | 65.0% | |
| TTCACTTGCGGCGCAGGTGG+AGG | - | chr7_4:51426348-51426367 | None:intergenic | 65.0% | |
| TCCACCTGCGCCGCAAGTGA+AGG | + | chr7_4:51426347-51426366 | Msa1161200:CDS | 65.0% | |
| TCCTTCACTTGCGGCGCAGG+TGG | - | chr7_4:51426351-51426370 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 51426135 | 51426998 | 51426135 | ID=Msa1161200;Name=Msa1161200 |
| chr7_4 | mRNA | 51426135 | 51426998 | 51426135 | ID=Msa1161200-mRNA-1;Parent=Msa1161200;Name=Msa1161200-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|287 |
| chr7_4 | exon | 51426135 | 51426998 | 51426135 | ID=Msa1161200-mRNA-1:exon:14513;Parent=Msa1161200-mRNA-1 |
| chr7_4 | CDS | 51426135 | 51426998 | 51426135 | ID=Msa1161200-mRNA-1:cds;Parent=Msa1161200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
