AlfalfaGEDB | Msa1161640

M. sativa cultivar zhongmu-4 / Msa1161640

KEGG: -
GO: -
PFAM: PF14379.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161640	XP_003624830.2	74.638	276	12	4	1	219	1	275	1.01e-127	372

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161640	sp\|Q9SJW0\|PHL7_ARATH	36.863	255	73	8	27	210	3	240	5.13e-31	118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161640	G7L3R4	74.638	276	12	4	1	219	1	275	4.83e-128	372

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TFs/TRs:

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Gene ID	Type	Classification
Msa1161640	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161640	MtrunA17_Chr7g0254981	73.571	280	12	4	1	219	1	279	6.17e-131	370
Msa1161640	MtrunA17_Chr2g0291021	39.594	197	42	5	1	129	1	188	2.58e-32	119
Msa1161640	MtrunA17_Chr5g0409731	78.431	51	11	0	48	98	25	75	1.78e-24	98.2
Msa1161640	MtrunA17_Chr2g0310011	76.471	51	12	0	48	98	35	85	2.01e-22	93.6
Msa1161640	MtrunA17_Chr8g0356501	74.510	51	13	0	48	98	37	87	6.70e-22	92.0
Msa1161640	MtrunA17_Chr1g0197171	72.549	51	14	0	48	98	44	94	2.24e-21	89.7
Msa1161640	MtrunA17_Chr5g0417521	67.308	52	17	0	47	98	14	65	2.60e-21	90.5
Msa1161640	MtrunA17_Chr6g0461641	67.308	52	17	0	47	98	41	92	3.66e-21	90.5
Msa1161640	MtrunA17_Chr7g0261911	36.774	155	38	3	31	125	241	395	3.69e-21	90.9
Msa1161640	MtrunA17_Chr4g0042451	67.308	52	17	0	47	98	16	67	8.42e-21	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1161640	AT2G01060.1	36.863	255	73	8	27	210	3	240	5.21e-32	118
Msa1161640	AT4G13640.1	76.471	51	12	0	48	98	37	87	1.01e-23	96.3
Msa1161640	AT4G13640.2	76.471	51	12	0	48	98	37	87	1.11e-23	96.3
Msa1161640	AT3G24120.1	74.510	51	13	0	48	98	41	91	4.55e-23	94.7
Msa1161640	AT3G24120.2	74.510	51	13	0	48	98	41	91	5.02e-23	94.7
Msa1161640	AT3G12730.1	72.549	51	14	0	48	98	23	73	1.22e-22	92.4
Msa1161640	AT1G79430.2	40.458	131	19	2	48	119	34	164	1.64e-22	94.4
Msa1161640	AT3G04450.1	34.010	197	57	5	42	171	231	421	2.48e-22	94.7
Msa1161640	AT3G04450.4	34.010	197	57	5	42	171	191	381	2.53e-22	94.4
Msa1161640	AT3G04450.2	34.010	197	57	5	42	171	191	381	2.53e-22	94.4

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Find 86 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGCGTTGAAATGAA+CGG	0.689332	7_4:-51818622	None:intergenic
AAAGGTGTTCTGAGAGTGAT+GGG	0.625965	7_4:+51822008	Msa1161640:CDS
AAATCTCAAGGCGGTGGTGG+TGG	0.477044	7_4:+51819076	Msa1161640:CDS
AAATTGAAGCATTCAGAATC+TGG	0.331873	7_4:-51818812	None:intergenic
AACTTGTATGAAGACGATGC+TGG	0.582842	7_4:+51823624	Msa1161640:CDS
AAGAATTAGTTTCTGTTTGT+AGG	0.306362	7_4:+51823700	Msa1161640:exon
AAGTGTTTCCGATGCTGCCA+AGG	0.559809	7_4:-51823412	None:intergenic
AATGTTCAACCTGCTGGAGG+TGG	0.620630	7_4:+51819145	Msa1161640:CDS
ACAAATGAGAATTGAAGCCC+AGG	0.536357	7_4:+51823341	Msa1161640:CDS
ACATGATAAATGGTCAGTCC+AGG	0.573039	7_4:-51822035	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAAATGGAAAGTTTCT+AGG	-	chr7_4:51818883-51818902	None:intergenic	30.0%
TAGAAACTTTCCATTTGACT+TGG	+	chr7_4:51818882-51818901	Msa1161640:intron	30.0%
ATGATGCTACATAAATCTCA+AGG	+	chr7_4:51819064-51819083	Msa1161640:CDS	30.0%
AAGCTACAAAGTTTAACTGT+TGG	+	chr7_4:51819439-51819458	Msa1161640:intron	30.0%
CCTATGTTTAGTATCATTGT+GGG	-	chr7_4:51819498-51819517	None:intergenic	30.0%
ATAGGCTAAACCTTCTAAAT+TGG	+	chr7_4:51819513-51819532	Msa1161640:intron	30.0%
TAGGCTAAACCTTCTAAATT+GGG	+	chr7_4:51819514-51819533	Msa1161640:intron	30.0%
TTGCTAGAACATGCTAAAAA+GGG	-	chr7_4:51819668-51819687	None:intergenic	30.0%
ATTGCTAGAACATGCTAAAA+AGG	-	chr7_4:51819669-51819688	None:intergenic	30.0%
AAATAAGTAATGCATGCGTA+AGG	+	chr7_4:51819742-51819761	Msa1161640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	51818568	51824084	51818568	ID=Msa1161640;Name=Msa1161640
chr7_4	mRNA	51818568	51824084	51818568	ID=Msa1161640-mRNA-1;Parent=Msa1161640;Name=Msa1161640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=288\|0.66\|1\|1\|0\|0.5\|4\|383\|222
chr7_4	exon	51818568	51818848	51818568	ID=Msa1161640-mRNA-1:exon:14771;Parent=Msa1161640-mRNA-1
chr7_4	exon	51819024	51819247	51819024	ID=Msa1161640-mRNA-1:exon:14772;Parent=Msa1161640-mRNA-1
chr7_4	exon	51821997	51822073	51821997	ID=Msa1161640-mRNA-1:exon:14773;Parent=Msa1161640-mRNA-1
chr7_4	exon	51823327	51824084	51823327	ID=Msa1161640-mRNA-1:exon:14774;Parent=Msa1161640-mRNA-1
chr7_4	five_prime_UTR	51818568	51818848	51818568	ID=Msa1161640-mRNA-1:five_prime_utr;Parent=Msa1161640-mRNA-1
chr7_4	five_prime_UTR	51819024	51819030	51819024	ID=Msa1161640-mRNA-1:five_prime_utr;Parent=Msa1161640-mRNA-1
chr7_4	CDS	51819031	51819247	51819031	ID=Msa1161640-mRNA-1:cds;Parent=Msa1161640-mRNA-1
chr7_4	CDS	51821997	51822073	51821997	ID=Msa1161640-mRNA-1:cds;Parent=Msa1161640-mRNA-1
chr7_4	CDS	51823327	51823701	51823327	ID=Msa1161640-mRNA-1:cds;Parent=Msa1161640-mRNA-1
chr7_4	three_prime_UTR	51823702	51824084	51823702	ID=Msa1161640-mRNA-1:three_prime_utr;Parent=Msa1161640-mRNA-1

Gene Sequence

>Msa1161640

ATGTATCATGCAAAGAAGTTTCCGGAGGAGACGATGATGCTACATAAATCTCAAGGCGGTGGTGGTGGTGAACAGTTTGCAAATGGTGGGGGTTTGAATGGATCTGCTGTGAAAAATGTTCAACCTGCTGGAGGTGGTGGGAAGCAGCGTTTGCGTTGGACGTCGGATCTTCATGACCGTTTTGTCGATGCTATTACGCAGCTTGGTGGACCAGATAGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGTGTGCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCCCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGGCAGCATCGGAAACACTTCCGCTGTCCCATGATAAGCAAAACCAGCCCCTATCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCCCATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCACTGCATCCCAAGTTACAAGAAAGACTGCTCAGAAGAATGATTGTGATGTTGGTCCTTTGGATCCAAACTTGTATGAAGACGATGCTGGCTATGGATTTGATTTGGAAACAGAAAATGACGACGGCAATGAGAGTGAGCAGTAA

Protein sequence

>Msa1161640

MYHAKKFPEETMMLHKSQGGGGGEQFANGGGLNGSAVKNVQPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLSHDKQNQPLSEPSGSSDALAGTFSPHKKQRIDEGSKDGFTASQVTRKTAQKNDCDVGPLDPNLYEDDAGYGFDLETENDDGNESEQ*