Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162600 | XP_013466755.2 | 24.257 | 404 | 246 | 10 | 23 | 377 | 104 | 496 | 8.39e-24 | 116 |
| Msa1162600 | XP_013466755.2 | 67.516 | 314 | 80 | 3 | 40 | 342 | 506 | 808 | 1.11e-141 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162600 | sp|Q7XUC5|P2C43_ORYSJ | 50.794 | 63 | 31 | 0 | 353 | 415 | 37 | 99 | 4.54e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162600 | A0A072U9K2 | 53.776 | 331 | 123 | 6 | 13 | 313 | 3 | 333 | 1.65e-107 | 335 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1162600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162600 | MtrunA17_Chr1g0163131 | 43.038 | 316 | 142 | 5 | 16 | 304 | 6 | 310 | 5.55e-78 | 244 |
| Msa1162600 | MtrunA17_Chr1g0163101 | 69.006 | 171 | 42 | 3 | 13 | 182 | 2 | 162 | 2.66e-76 | 235 |
| Msa1162600 | MtrunA17_Chr1g0163251 | 45.085 | 295 | 147 | 5 | 37 | 323 | 14 | 301 | 4.60e-74 | 236 |
| Msa1162600 | MtrunA17_Chr1g0163091 | 73.643 | 129 | 34 | 0 | 187 | 315 | 4 | 132 | 1.11e-65 | 207 |
| Msa1162600 | MtrunA17_Chr1g0162161 | 67.808 | 146 | 38 | 2 | 43 | 187 | 3 | 140 | 1.62e-65 | 206 |
| Msa1162600 | MtrunA17_Chr6g0476181 | 66.897 | 145 | 43 | 1 | 43 | 182 | 1 | 145 | 1.37e-63 | 201 |
| Msa1162600 | MtrunA17_Chr1g0163261 | 40.067 | 297 | 156 | 6 | 28 | 313 | 9 | 294 | 2.28e-63 | 206 |
| Msa1162600 | MtrunA17_Chr1g0163181 | 36.550 | 342 | 185 | 6 | 37 | 346 | 14 | 355 | 9.67e-63 | 208 |
| Msa1162600 | MtrunA17_Chr1g0163231 | 43.403 | 288 | 135 | 8 | 28 | 303 | 9 | 280 | 2.03e-62 | 203 |
| Msa1162600 | MtrunA17_Chr1g0163141 | 63.399 | 153 | 44 | 1 | 42 | 182 | 9 | 161 | 3.28e-61 | 196 |
| Msa1162600 | MtrunA17_Chr1g0163081 | 68.657 | 134 | 31 | 1 | 43 | 176 | 5 | 127 | 2.17e-60 | 192 |
| Msa1162600 | MtrunA17_Chr1g0171611 | 42.349 | 281 | 136 | 8 | 28 | 303 | 9 | 268 | 2.39e-58 | 192 |
| Msa1162600 | MtrunA17_Chr1g0162151 | 73.643 | 129 | 34 | 0 | 187 | 315 | 4 | 132 | 9.66e-58 | 188 |
| Msa1162600 | MtrunA17_Chr1g0163201 | 35.976 | 328 | 187 | 7 | 31 | 346 | 2 | 318 | 1.30e-54 | 186 |
| Msa1162600 | MtrunA17_Chr1g0163121 | 61.268 | 142 | 40 | 3 | 42 | 180 | 9 | 138 | 4.36e-52 | 171 |
| Msa1162600 | MtrunA17_Chr1g0163161 | 68.293 | 123 | 31 | 2 | 58 | 179 | 3 | 118 | 4.85e-50 | 165 |
| Msa1162600 | MtrunA17_Chr3g0131891 | 31.229 | 301 | 191 | 9 | 23 | 310 | 14 | 311 | 2.56e-33 | 127 |
| Msa1162600 | MtrunA17_Chr4g0067431 | 31.661 | 319 | 183 | 11 | 25 | 314 | 12 | 324 | 1.16e-32 | 125 |
| Msa1162600 | MtrunA17_Chr8g0390841 | 30.159 | 315 | 187 | 12 | 26 | 314 | 37 | 344 | 9.76e-30 | 120 |
| Msa1162600 | MtrunA17_Chr1g0208771 | 31.546 | 317 | 184 | 12 | 44 | 334 | 13 | 322 | 1.27e-28 | 117 |
| Msa1162600 | MtrunA17_Chr1g0208771 | 22.727 | 286 | 184 | 8 | 28 | 303 | 201 | 459 | 4.60e-13 | 70.5 |
| Msa1162600 | MtrunA17_Chr7g0233561 | 29.841 | 315 | 181 | 11 | 21 | 305 | 11 | 315 | 9.10e-28 | 112 |
| Msa1162600 | MtrunA17_Chr3g0103171 | 31.179 | 263 | 171 | 7 | 44 | 300 | 6 | 264 | 3.55e-27 | 109 |
| Msa1162600 | MtrunA17_Chr6g0476171 | 46.099 | 141 | 67 | 4 | 182 | 313 | 6 | 146 | 4.78e-27 | 108 |
| Msa1162600 | MtrunA17_Chr1g0163221 | 32.886 | 298 | 168 | 12 | 22 | 300 | 5 | 289 | 8.58e-27 | 110 |
| Msa1162600 | MtrunA17_Chr1g0163151 | 46.364 | 110 | 59 | 0 | 203 | 312 | 15 | 124 | 1.30e-26 | 106 |
| Msa1162600 | MtrunA17_Chr1g0163111 | 42.537 | 134 | 64 | 2 | 203 | 336 | 12 | 132 | 2.72e-26 | 105 |
| Msa1162600 | MtrunA17_Chr1g0163071 | 26.299 | 308 | 182 | 7 | 43 | 314 | 1 | 299 | 8.75e-26 | 106 |
| Msa1162600 | MtrunA17_Chr3g0077411 | 25.574 | 305 | 182 | 9 | 9 | 300 | 243 | 515 | 1.22e-21 | 97.1 |
| Msa1162600 | MtrunA17_Chr1g0163191 | 41.509 | 106 | 61 | 1 | 37 | 141 | 14 | 119 | 3.98e-21 | 89.7 |
| Msa1162600 | MtrunA17_Chr7g0233531 | 28.929 | 280 | 178 | 9 | 43 | 310 | 1 | 271 | 2.74e-20 | 90.1 |
| Msa1162600 | MtrunA17_Chr1g0163241 | 35.000 | 140 | 79 | 3 | 44 | 171 | 23 | 162 | 3.25e-20 | 87.4 |
| Msa1162600 | MtrunA17_Chr7g0233541 | 26.990 | 289 | 189 | 9 | 43 | 310 | 1 | 288 | 1.29e-19 | 88.6 |
| Msa1162600 | MtrunA17_Chr6g0467351 | 37.838 | 148 | 79 | 6 | 25 | 161 | 12 | 157 | 2.11e-19 | 86.7 |
| Msa1162600 | MtrunA17_Chr7g0233521 | 28.322 | 286 | 172 | 11 | 43 | 310 | 1 | 271 | 2.80e-19 | 87.4 |
| Msa1162600 | MtrunA17_Chr3g0103181 | 27.586 | 290 | 190 | 10 | 18 | 300 | 2 | 278 | 1.89e-18 | 85.1 |
| Msa1162600 | MtrunA17_Chr5g0429931 | 28.195 | 266 | 152 | 10 | 44 | 303 | 11 | 243 | 3.94e-18 | 83.6 |
| Msa1162600 | MtrunA17_Chr1g0163061 | 45.631 | 103 | 52 | 2 | 25 | 123 | 12 | 114 | 4.01e-18 | 84.0 |
| Msa1162600 | MtrunA17_Chr3g0103151 | 38.017 | 121 | 70 | 3 | 26 | 143 | 10 | 128 | 6.77e-18 | 80.5 |
| Msa1162600 | MtrunA17_Chr5g0419211 | 41.489 | 94 | 54 | 1 | 224 | 316 | 11 | 104 | 1.01e-17 | 78.6 |
| Msa1162600 | MtrunA17_Chr3g0077451 | 24.164 | 269 | 158 | 7 | 42 | 305 | 10 | 237 | 5.97e-17 | 79.7 |
| Msa1162600 | MtrunA17_Chr5g0419201 | 32.847 | 137 | 82 | 4 | 13 | 143 | 5 | 137 | 2.77e-16 | 77.0 |
| Msa1162600 | MtrunA17_Chr7g0233571 | 35.338 | 133 | 83 | 2 | 27 | 156 | 9 | 141 | 2.85e-16 | 77.4 |
| Msa1162600 | MtrunA17_Chr3g0103201 | 30.317 | 221 | 146 | 6 | 84 | 300 | 3 | 219 | 4.85e-16 | 77.0 |
| Msa1162600 | MtrunA17_Chr3g0103191 | 34.109 | 129 | 80 | 3 | 18 | 143 | 2 | 128 | 1.93e-14 | 72.8 |
| Msa1162600 | MtrunA17_Chr1g0154131 | 26.087 | 299 | 183 | 11 | 26 | 299 | 182 | 467 | 3.91e-14 | 73.9 |
| Msa1162600 | MtrunA17_Chr3g0077461 | 30.000 | 160 | 99 | 3 | 27 | 183 | 236 | 385 | 4.02e-14 | 73.9 |
| Msa1162600 | MtrunA17_Chr1g0154111 | 25.220 | 341 | 181 | 13 | 26 | 299 | 24 | 357 | 1.02e-13 | 73.2 |
| Msa1162600 | MtrunA17_Chr3g0077431 | 25.106 | 235 | 130 | 7 | 76 | 305 | 5 | 198 | 1.02e-13 | 69.7 |
| Msa1162600 | MtrunA17_Chr3g0077381 | 27.530 | 247 | 131 | 9 | 17 | 253 | 229 | 437 | 2.10e-13 | 71.6 |
| Msa1162600 | MtrunA17_Chr1g0154161 | 24.113 | 282 | 183 | 8 | 26 | 289 | 28 | 296 | 8.57e-13 | 68.9 |
| Msa1162600 | MtrunA17_Chr1g0175381 | 43.750 | 64 | 36 | 0 | 353 | 416 | 37 | 100 | 4.22e-12 | 67.4 |
| Msa1162600 | MtrunA17_Chr3g0089721 | 47.761 | 67 | 34 | 1 | 351 | 416 | 23 | 89 | 5.12e-12 | 67.0 |
| Msa1162600 | MtrunA17_Chr4g0009491 | 27.935 | 247 | 137 | 10 | 17 | 253 | 207 | 422 | 6.94e-12 | 67.0 |
| Msa1162600 | MtrunA17_Chr3g0089711 | 46.269 | 67 | 35 | 1 | 351 | 416 | 23 | 89 | 1.28e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162600 | AT5G06750.3 | 47.541 | 61 | 32 | 0 | 356 | 416 | 43 | 103 | 1.60e-12 | 68.9 |
| Msa1162600 | AT5G06750.1 | 47.541 | 61 | 32 | 0 | 356 | 416 | 43 | 103 | 1.60e-12 | 68.9 |
Find 75 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACAAAGAGTGCTTTA+TGG | 0.196581 | 7_4:-53368636 | None:intergenic |
| AAAACTTGGATTCTCATTAT+TGG | 0.211537 | 7_4:-53367015 | None:intergenic |
| TATCTCTCTACAAAATTCTT+TGG | 0.250785 | 7_4:-53366331 | None:intergenic |
| ACTCCGAGTGCAAAATGTTT+TGG | 0.261076 | 7_4:+53366398 | Msa1162600:CDS |
| TCAATTATTGAACATCTCTT+AGG | 0.278157 | 7_4:-53366975 | None:intergenic |
| CGGAGTCATTTAGAAGTCTA+AGG | 0.288812 | 7_4:-53366381 | None:intergenic |
| TGGAAGTGACGGCACCATTT+TGG | 0.295956 | 7_4:-53368669 | None:intergenic |
| GAATTTGATGATGATCCTTT+AGG | 0.300625 | 7_4:+53368514 | Msa1162600:CDS |
| TTTAGAAGTCTAAGGGATAT+TGG | 0.322347 | 7_4:-53366373 | None:intergenic |
| GGAATTTACAATGGCCAAAA+TGG | 0.329643 | 7_4:+53368655 | Msa1162600:CDS |
| ATGATGTTTGGTTTCTGAAT+TGG | 0.331260 | 7_4:+53366434 | Msa1162600:CDS |
| GGGACCCCTTCTACAAATTC+AGG | 0.347036 | 7_4:+53367570 | Msa1162600:CDS |
| AATTTGATGATGATCCTTTA+GGG | 0.351572 | 7_4:+53368515 | Msa1162600:CDS |
| GAACCTCCTGAATTTGTAGA+AGG | 0.363430 | 7_4:-53367576 | None:intergenic |
| TAGCATCACTGCCACGGCCT+TGG | 0.370846 | 7_4:-53365375 | None:intergenic |
| TTGACGGGATCGCAAGGATA+AGG | 0.384450 | 7_4:+53367194 | Msa1162600:CDS |
| CGCCAAACTGATGCTCTTCG+AGG | 0.388519 | 7_4:-53368549 | None:intergenic |
| CCTTGCAACTTGTTAGGGCT+TGG | 0.397107 | 7_4:-53367406 | None:intergenic |
| GAGGTTATTACTCAAGAAGT+TGG | 0.412926 | 7_4:-53368689 | None:intergenic |
| CAAAACGTGGTGATGATGTT+TGG | 0.416670 | 7_4:+53366422 | Msa1162600:CDS |
| GGCCATAAAGCACTCTTTGT+TGG | 0.446761 | 7_4:+53368634 | Msa1162600:CDS |
| ATCAAATTCATTAATTTCAA+CGG | 0.451662 | 7_4:-53368500 | None:intergenic |
| GGCTTGGTTCCTCACTAGCT+CGG | 0.456216 | 7_4:-53367390 | None:intergenic |
| GGTTAGGTCGAATGGTGTTA+TGG | 0.459338 | 7_4:+53368588 | Msa1162600:CDS |
| TGACGGGATCGCAAGGATAA+GGG | 0.470585 | 7_4:+53367195 | Msa1162600:CDS |
| ACTCACGAAGTAGAATAGTT+TGG | 0.476337 | 7_4:-53365414 | None:intergenic |
| AATGTCAGTGTCTAGTTGAA+TGG | 0.484492 | 7_4:-53365332 | None:intergenic |
| TGAGCGTGGTTACTAGCTCT+TGG | 0.484893 | 7_4:-53365444 | None:intergenic |
| AGGCCGTGGCAGTGATGCTA+AGG | 0.488026 | 7_4:+53365378 | Msa1162600:CDS |
| GACCTCGAAGAGCATCAGTT+TGG | 0.488137 | 7_4:+53368547 | Msa1162600:CDS |
| TGGCGAAACCTCAATGGTTG+TGG | 0.490172 | 7_4:+53368567 | Msa1162600:CDS |
| AAACCTCAATGGTTGTGGTT+AGG | 0.492074 | 7_4:+53368572 | Msa1162600:CDS |
| AATACTTGAACGAGTTTGAC+GGG | 0.492831 | 7_4:+53367179 | Msa1162600:CDS |
| TTGTCAATGTTTGTCCCTTG+AGG | 0.507957 | 7_4:-53366703 | None:intergenic |
| GCCACGGCCTTGGTGAATGC+AGG | 0.515591 | 7_4:-53365365 | None:intergenic |
| CGACCTAACCACAACCATTG+AGG | 0.521901 | 7_4:-53368575 | None:intergenic |
| TCAGTTTGGCGAAACCTCAA+TGG | 0.529839 | 7_4:+53368561 | Msa1162600:CDS |
| AAGGAAAATAACTTGCAAGT+TGG | 0.532958 | 7_4:+53367307 | Msa1162600:CDS |
| ATGATCCTTTAGGGTGGTCA+AGG | 0.539972 | 7_4:+53368524 | Msa1162600:CDS |
| GAATACTTGAACGAGTTTGA+CGG | 0.544212 | 7_4:+53367178 | Msa1162600:CDS |
| AGGTCCCTTGACCACCCTAA+AGG | 0.544479 | 7_4:-53368529 | None:intergenic |
| ACCTGCATTCACCAAGGCCG+TGG | 0.545742 | 7_4:+53365364 | Msa1162600:CDS |
| CTCTTTGTTGGAATTTACAA+TGG | 0.546633 | 7_4:+53368646 | Msa1162600:CDS |
| ACTAGTGCTGCTACACCTCA+AGG | 0.555707 | 7_4:+53366688 | Msa1162600:CDS |
| ATGACACAAACTTATGCTCA+TGG | 0.555807 | 7_4:+53367047 | Msa1162600:CDS |
| TTCTATTACCCGAGCTAGTG+AGG | 0.556254 | 7_4:+53367381 | Msa1162600:CDS |
| CTTTATGGCCAACATCAAGT+TGG | 0.556863 | 7_4:-53368621 | None:intergenic |
| GCTTGGTTCCTCACTAGCTC+GGG | 0.557073 | 7_4:-53367389 | None:intergenic |
| AACCTCCTGAATTTGTAGAA+GGG | 0.561604 | 7_4:-53367575 | None:intergenic |
| ACCTCCTGAATTTGTAGAAG+GGG | 0.563047 | 7_4:-53367574 | None:intergenic |
| ACGAGTTTGACGGGATCGCA+AGG | 0.567127 | 7_4:+53367188 | Msa1162600:CDS |
| GGGTTGATCAAGGTAGAACT+TGG | 0.568539 | 7_4:+53367215 | Msa1162600:CDS |
| GATCGCAACCAACTTGATGT+TGG | 0.577699 | 7_4:+53368613 | Msa1162600:CDS |
| ATGGTTGTGGTTAGGTCGAA+TGG | 0.582368 | 7_4:+53368580 | Msa1162600:CDS |
| AACTTTGCAGGTACTAACAA+AGG | 0.591292 | 7_4:+53366942 | Msa1162600:intron |
| CCAAGCCCTAACAAGTTGCA+AGG | 0.593191 | 7_4:+53367406 | Msa1162600:CDS |
| GCAAGGATAAGGGTTGATCA+AGG | 0.597665 | 7_4:+53367205 | Msa1162600:CDS |
| GGAGTCATTTAGAAGTCTAA+GGG | 0.598879 | 7_4:-53366380 | None:intergenic |
| GCAGGTACTAACAAAGGAGG+AGG | 0.600379 | 7_4:+53366948 | Msa1162600:intron |
| TTCCCTTAGCATCACTGCCA+CGG | 0.603534 | 7_4:-53365381 | None:intergenic |
| TTTACACGGTCACTTAGATG+TGG | 0.607351 | 7_4:+53366463 | Msa1162600:CDS |
| TGGTTGGTCTTTATTCAACA+AGG | 0.607895 | 7_4:+53367288 | Msa1162600:CDS |
| ACTCAAGAAGTTGGAAGTGA+CGG | 0.615373 | 7_4:-53368680 | None:intergenic |
| CACTACATAGAATTCAGAAG+AGG | 0.623991 | 7_4:-53368708 | None:intergenic |
| ACCCCTTCTACAAATTCAGG+AGG | 0.639356 | 7_4:+53367573 | Msa1162600:CDS |
| ATAGAAATATTAAATGAAAG+CGG | 0.641791 | 7_4:-53367364 | None:intergenic |
| TGATCCTTTAGGGTGGTCAA+GGG | 0.644376 | 7_4:+53368525 | Msa1162600:CDS |
| GGCCGTGGCAGTGATGCTAA+GGG | 0.651042 | 7_4:+53365379 | Msa1162600:CDS |
| TGAATTGGAAAAGATTTACA+CGG | 0.654663 | 7_4:+53366449 | Msa1162600:CDS |
| TTGATGATGATCCTTTAGGG+TGG | 0.657270 | 7_4:+53368518 | Msa1162600:CDS |
| CTAGTGCTGCTACACCTCAA+GGG | 0.659036 | 7_4:+53366689 | Msa1162600:CDS |
| TAGGTCGAATGGTGTTATGG+AGG | 0.666731 | 7_4:+53368591 | Msa1162600:CDS |
| TGTAAACAAGAAGAGAGTGA+TGG | 0.668678 | 7_4:+53366610 | Msa1162600:CDS |
| TTTGCAGGTACTAACAAAGG+AGG | 0.671084 | 7_4:+53366945 | Msa1162600:intron |
| CAACATACCTGCATTCACCA+AGG | 0.683546 | 7_4:+53365358 | Msa1162600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTAATTTTTTTTTGA+AGG | + | chr7_4:53365682-53365701 | Msa1162600:intron | 10.0% |
| !!! | ATTGTTTTTATAATAATGAT+CGG | + | chr7_4:53365728-53365747 | Msa1162600:intron | 10.0% |
| !!! | TTGAAAATGTTTACTAATTT+TGG | + | chr7_4:53367092-53367111 | Msa1162600:intron | 15.0% |
| !!! | TATTCTTTTGAAAACTTATT+TGG | - | chr7_4:53367163-53367182 | None:intergenic | 15.0% |
| !! | ATAGAAATATTAAATGAAAG+CGG | - | chr7_4:53367367-53367386 | None:intergenic | 15.0% |
| !! | ATTGATAAAAGGAATTAAAA+AGG | - | chr7_4:53367533-53367552 | None:intergenic | 15.0% |
| !! | ATCAAATTCATTAATTTCAA+CGG | - | chr7_4:53368503-53368522 | None:intergenic | 15.0% |
| !! | ACAAGTCAAAAATATACAAA+TGG | - | chr7_4:53365914-53365933 | None:intergenic | 20.0% |
| !! | AGTCTTAGATGATTTAAAAA+TGG | - | chr7_4:53366119-53366138 | None:intergenic | 20.0% |
| !!! | CTGTATATTGATTTTGTATT+TGG | + | chr7_4:53366192-53366211 | Msa1162600:intron | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | + | chr7_4:53366490-53366509 | Msa1162600:CDS | 20.0% |
| !!! | TTAATTTTCTTTTTCTTGAG+GGG | - | chr7_4:53366652-53366671 | None:intergenic | 20.0% |
| !!! | GTTAATTTTCTTTTTCTTGA+GGG | - | chr7_4:53366653-53366672 | None:intergenic | 20.0% |
| !!! | AGTTAATTTTCTTTTTCTTG+AGG | - | chr7_4:53366654-53366673 | None:intergenic | 20.0% |
| !! | AATGACTAGGTTATAAAAAA+GGG | + | chr7_4:53367550-53367569 | Msa1162600:intron | 20.0% |
| !! | TTAATTACTTGCATAAAATG+TGG | + | chr7_4:53367657-53367676 | Msa1162600:intron | 20.0% |
| !! | AATATCATTTACTATATGTG+TGG | - | chr7_4:53367744-53367763 | None:intergenic | 20.0% |
| !! | AAAATTTATGAAGTTGAAAG+TGG | + | chr7_4:53367826-53367845 | Msa1162600:intron | 20.0% |
| !! | CTTACAATAACAAAATAACA+AGG | - | chr7_4:53368071-53368090 | None:intergenic | 20.0% |
| !!! | ATATTTTGATGATTGAATAC+TGG | + | chr7_4:53368162-53368181 | Msa1162600:intron | 20.0% |
| !! | AACTAACAAAAGTAACATAT+AGG | - | chr7_4:53368223-53368242 | None:intergenic | 20.0% |
| !! | ATATATCTAACTAAACTATC+AGG | - | chr7_4:53368261-53368280 | None:intergenic | 20.0% |
| !! | AACTACTGAAAATAGAAAAA+TGG | - | chr7_4:53368289-53368308 | None:intergenic | 20.0% |
| !!! | AGAATGAGTCTTGTTTATTA+AGG | - | chr7_4:53365549-53365568 | None:intergenic | 25.0% |
| ! | AAACAATAAAATGTTCACTC+AGG | - | chr7_4:53365873-53365892 | None:intergenic | 25.0% |
| ! | AGTCAAAAATATACAAATGG+AGG | - | chr7_4:53365911-53365930 | None:intergenic | 25.0% |
| !! | AATGGTTTAGGTTACAAAAA+TGG | - | chr7_4:53366094-53366113 | None:intergenic | 25.0% |
| ! | TTAAAAATGGACAATGGTTT+AGG | - | chr7_4:53366106-53366125 | None:intergenic | 25.0% |
| ! | GATGATTTAAAAATGGACAA+TGG | - | chr7_4:53366112-53366131 | None:intergenic | 25.0% |
| ! | GACTTATCATGTTAGTAATT+TGG | + | chr7_4:53366135-53366154 | Msa1162600:intron | 25.0% |
| !!! | TTTTGTATTTGGTTTGAGTT+TGG | + | chr7_4:53366203-53366222 | Msa1162600:intron | 25.0% |
| ! | AAAACCAATGAGTTTAAACT+TGG | - | chr7_4:53366288-53366307 | None:intergenic | 25.0% |
| ! | TATCTCTCTACAAAATTCTT+TGG | - | chr7_4:53366334-53366353 | None:intergenic | 25.0% |
| !! | AGAATTTTGTAGAGAGATAT+TGG | + | chr7_4:53366335-53366354 | Msa1162600:CDS | 25.0% |
| ! | TGAATTGGAAAAGATTTACA+CGG | + | chr7_4:53366449-53366468 | Msa1162600:CDS | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | + | chr7_4:53366493-53366512 | Msa1162600:CDS | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | + | chr7_4:53366494-53366513 | Msa1162600:CDS | 25.0% |
| ! | GTATATTCTAATCATTTCCA+AGG | - | chr7_4:53366919-53366938 | None:intergenic | 25.0% |
| ! | AGAATATACATTAACTTTGC+AGG | + | chr7_4:53366930-53366949 | Msa1162600:intron | 25.0% |
| ! | TCAATTATTGAACATCTCTT+AGG | - | chr7_4:53366978-53366997 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTCATTAT+TGG | - | chr7_4:53367018-53367037 | None:intergenic | 25.0% |
| !!! | GTCATTTTAAGTTCAAAACT+TGG | - | chr7_4:53367032-53367051 | None:intergenic | 25.0% |
| ! | AAAGCAAACTTACACAAAAA+TGG | - | chr7_4:53367073-53367092 | None:intergenic | 25.0% |
| !! | AATTCCTTTTATCAATGACT+AGG | + | chr7_4:53367537-53367556 | Msa1162600:intron | 25.0% |
| ! | ATAACCTAGTCATTGATAAA+AGG | - | chr7_4:53367544-53367563 | None:intergenic | 25.0% |
| ! | CAATGACTAGGTTATAAAAA+AGG | + | chr7_4:53367549-53367568 | Msa1162600:intron | 25.0% |
| ! | AAAGTTATGTATTATCGTAG+AGG | + | chr7_4:53367869-53367888 | Msa1162600:intron | 25.0% |
| ! | GTTATTGTAAGCAACTATAT+TGG | + | chr7_4:53368080-53368099 | Msa1162600:intron | 25.0% |
| !!! | AATTTGATGATGATCCTTTA+GGG | + | chr7_4:53368515-53368534 | Msa1162600:CDS | 25.0% |
| TGATATATCATAGCTTGAGT+GGG | - | chr7_4:53365627-53365646 | None:intergenic | 30.0% | |
| ATGATATATCATAGCTTGAG+TGG | - | chr7_4:53365628-53365647 | None:intergenic | 30.0% | |
| AACATCTCTAGTAGAATTTC+AGG | + | chr7_4:53365806-53365825 | Msa1162600:intron | 30.0% | |
| ACATCTCTAGTAGAATTTCA+GGG | + | chr7_4:53365807-53365826 | Msa1162600:intron | 30.0% | |
| ATAGTGTTCTAGTGTGATAA+AGG | - | chr7_4:53365973-53365992 | None:intergenic | 30.0% | |
| AACTTTCACAAGTGTAAGTT+TGG | + | chr7_4:53366052-53366071 | Msa1162600:intron | 30.0% | |
| !! | GTAATTTGGTTAGCTCTTTT+CGG | + | chr7_4:53366149-53366168 | Msa1162600:intron | 30.0% |
| TTGGATTGAACAAGTAATGA+AGG | - | chr7_4:53366269-53366288 | None:intergenic | 30.0% | |
| CAATCCAAGTTTAAACTCAT+TGG | + | chr7_4:53366281-53366300 | Msa1162600:intron | 30.0% | |
| TTTAGAAGTCTAAGGGATAT+TGG | - | chr7_4:53366376-53366395 | None:intergenic | 30.0% | |
| ! | ATGATGTTTGGTTTCTGAAT+TGG | + | chr7_4:53366434-53366453 | Msa1162600:CDS | 30.0% |
| !!! | CTTGCCTAAGACTTTTTTAT+GGG | - | chr7_4:53366752-53366771 | None:intergenic | 30.0% |
| !!! | ACTTGCCTAAGACTTTTTTA+TGG | - | chr7_4:53366753-53366772 | None:intergenic | 30.0% |
| AAGAGAAACTAATGAAGTAG+AGG | - | chr7_4:53366777-53366796 | None:intergenic | 30.0% | |
| TATACCATGAATTGAAACAG+AGG | + | chr7_4:53367134-53367153 | Msa1162600:intron | 30.0% | |
| !!! | AGATGTTCTTTTTTGCAAGT+TGG | + | chr7_4:53367268-53367287 | Msa1162600:CDS | 30.0% |
| ! | AAGGAAAATAACTTGCAAGT+TGG | + | chr7_4:53367307-53367326 | Msa1162600:CDS | 30.0% |
| !! | AAAAACCTTGCAACTTGTTA+GGG | - | chr7_4:53367414-53367433 | None:intergenic | 30.0% |
| !! | GTCTACTAAAAAAAAGCATC+TGG | - | chr7_4:53367790-53367809 | None:intergenic | 30.0% |
| AAAGATTGCAGATCAAAGAT+TGG | + | chr7_4:53367915-53367934 | Msa1162600:intron | 30.0% | |
| TTGGTTGAATATTGTCTTGA+CGG | + | chr7_4:53368125-53368144 | Msa1162600:intron | 30.0% | |
| AAACATGATCTTGTGTTCTT+GGG | - | chr7_4:53368437-53368456 | None:intergenic | 30.0% | |
| !! | GAATTTGATGATGATCCTTT+AGG | + | chr7_4:53368514-53368533 | Msa1162600:CDS | 30.0% |
| CTCTTTGTTGGAATTTACAA+TGG | + | chr7_4:53368646-53368665 | Msa1162600:CDS | 30.0% | |
| AATGTCAGTGTCTAGTTGAA+TGG | - | chr7_4:53365335-53365354 | None:intergenic | 35.0% | |
| ACTCACGAAGTAGAATAGTT+TGG | - | chr7_4:53365417-53365436 | None:intergenic | 35.0% | |
| AAAAAAGAAGAAGTTGAGCG+TGG | - | chr7_4:53365461-53365480 | None:intergenic | 35.0% | |
| GTTGTCAGGGTTGAAATAAT+GGG | - | chr7_4:53365601-53365620 | None:intergenic | 35.0% | |
| AGTTGTCAGGGTTGAAATAA+TGG | - | chr7_4:53365602-53365621 | None:intergenic | 35.0% | |
| CATCTCTAGTAGAATTTCAG+GGG | + | chr7_4:53365808-53365827 | Msa1162600:intron | 35.0% | |
| ! | GTGAAAGTTTGTAAAAGCGT+GGG | - | chr7_4:53366041-53366060 | None:intergenic | 35.0% |
| TGTGAAAGTTTGTAAAAGCG+TGG | - | chr7_4:53366042-53366061 | None:intergenic | 35.0% | |
| !! | CGAAACTTGTTGATGAACTT+TGG | - | chr7_4:53366239-53366258 | None:intergenic | 35.0% |
| GATTGAACAAGTAATGAAGG+AGG | - | chr7_4:53366266-53366285 | None:intergenic | 35.0% | |
| GGAGTCATTTAGAAGTCTAA+GGG | - | chr7_4:53366383-53366402 | None:intergenic | 35.0% | |
| !! | AAAATGTTTTGGGCAAAACG+TGG | + | chr7_4:53366409-53366428 | Msa1162600:CDS | 35.0% |
| TGTAAACAAGAAGAGAGTGA+TGG | + | chr7_4:53366610-53366629 | Msa1162600:CDS | 35.0% | |
| ! | CTTTTTCTTGAGGGGATATT+TGG | - | chr7_4:53366644-53366663 | None:intergenic | 35.0% |
| GCAACCCATAAAAAAGTCTT+AGG | + | chr7_4:53366745-53366764 | Msa1162600:intron | 35.0% | |
| AACTTTGCAGGTACTAACAA+AGG | + | chr7_4:53366942-53366961 | Msa1162600:intron | 35.0% | |
| ATGACACAAACTTATGCTCA+TGG | + | chr7_4:53367047-53367066 | Msa1162600:CDS | 35.0% | |
| GTATCCTCTGTTTCAATTCA+TGG | - | chr7_4:53367141-53367160 | None:intergenic | 35.0% | |
| GAATACTTGAACGAGTTTGA+CGG | + | chr7_4:53367178-53367197 | Msa1162600:CDS | 35.0% | |
| AATACTTGAACGAGTTTGAC+GGG | + | chr7_4:53367179-53367198 | Msa1162600:CDS | 35.0% | |
| !!! | GTTCTTTTTTGCAAGTTGGT+TGG | + | chr7_4:53367272-53367291 | Msa1162600:CDS | 35.0% |
| !! | TGGTTGGTCTTTATTCAACA+AGG | + | chr7_4:53367288-53367307 | Msa1162600:CDS | 35.0% |
| ! | GAAAAACCTTGCAACTTGTT+AGG | - | chr7_4:53367415-53367434 | None:intergenic | 35.0% |
| AACCTCCTGAATTTGTAGAA+GGG | - | chr7_4:53367578-53367597 | None:intergenic | 35.0% | |
| TGGTTGAATATTGTCTTGAC+GGG | + | chr7_4:53368126-53368145 | Msa1162600:intron | 35.0% | |
| GAGAATAAGTGATGAGTATG+TGG | - | chr7_4:53368359-53368378 | None:intergenic | 35.0% | |
| AACATGATCTTGTGTTCTTG+GGG | - | chr7_4:53368436-53368455 | None:intergenic | 35.0% | |
| GAAACATGATCTTGTGTTCT+TGG | - | chr7_4:53368438-53368457 | None:intergenic | 35.0% | |
| AACACAAGATCATGTTTCAG+TGG | + | chr7_4:53368440-53368459 | Msa1162600:intron | 35.0% | |
| !! | TTCCAACAAAGAGTGCTTTA+TGG | - | chr7_4:53368639-53368658 | None:intergenic | 35.0% |
| GGAATTTACAATGGCCAAAA+TGG | + | chr7_4:53368655-53368674 | Msa1162600:CDS | 35.0% | |
| GAGGTTATTACTCAAGAAGT+TGG | - | chr7_4:53368692-53368711 | None:intergenic | 35.0% | |
| AATATTAAGTAGTCGCGCAG+TGG | + | chr7_4:53365755-53365774 | Msa1162600:intron | 40.0% | |
| TCAATATACAGATCCCTTGC+CGG | - | chr7_4:53366183-53366202 | None:intergenic | 40.0% | |
| CGGAGTCATTTAGAAGTCTA+AGG | - | chr7_4:53366384-53366403 | None:intergenic | 40.0% | |
| ! | ACTCCGAGTGCAAAATGTTT+TGG | + | chr7_4:53366398-53366417 | Msa1162600:CDS | 40.0% |
| ! | CTCCGAGTGCAAAATGTTTT+GGG | + | chr7_4:53366399-53366418 | Msa1162600:CDS | 40.0% |
| ! | TGCCCAAAACATTTTGCACT+CGG | - | chr7_4:53366404-53366423 | None:intergenic | 40.0% |
| ! | CAAAACGTGGTGATGATGTT+TGG | + | chr7_4:53366422-53366441 | Msa1162600:CDS | 40.0% |
| TTTACACGGTCACTTAGATG+TGG | + | chr7_4:53366463-53366482 | Msa1162600:CDS | 40.0% | |
| TTGTCAATGTTTGTCCCTTG+AGG | - | chr7_4:53366706-53366725 | None:intergenic | 40.0% | |
| CTAAAGATAACTGTGTGCCT+TGG | + | chr7_4:53366899-53366918 | Msa1162600:intron | 40.0% | |
| TTTGCAGGTACTAACAAAGG+AGG | + | chr7_4:53366945-53366964 | Msa1162600:intron | 40.0% | |
| ACCTCCTGAATTTGTAGAAG+GGG | - | chr7_4:53367577-53367596 | None:intergenic | 40.0% | |
| GAACCTCCTGAATTTGTAGA+AGG | - | chr7_4:53367579-53367598 | None:intergenic | 40.0% | |
| ! | TTTTGTGAATTCCTCGTACG+CGG | + | chr7_4:53367629-53367648 | Msa1162600:intron | 40.0% |
| AATTAATCATACCGCGTACG+AGG | - | chr7_4:53367643-53367662 | None:intergenic | 40.0% | |
| ! | AATATTGTCTTGACGGGTCT+TGG | + | chr7_4:53368132-53368151 | Msa1162600:intron | 40.0% |
| ! | CATTCTCTTCTTCTAGCTAG+AGG | + | chr7_4:53368380-53368399 | Msa1162600:intron | 40.0% |
| TTCTTGGGGAAACTCAAACT+AGG | - | chr7_4:53368422-53368441 | None:intergenic | 40.0% | |
| !! | TTGATGATGATCCTTTAGGG+TGG | + | chr7_4:53368518-53368537 | Msa1162600:CDS | 40.0% |
| AAACCTCAATGGTTGTGGTT+AGG | + | chr7_4:53368572-53368591 | Msa1162600:CDS | 40.0% | |
| CTTTATGGCCAACATCAAGT+TGG | - | chr7_4:53368624-53368643 | None:intergenic | 40.0% | |
| ACTCAAGAAGTTGGAAGTGA+CGG | - | chr7_4:53368683-53368702 | None:intergenic | 40.0% | |
| CAACATACCTGCATTCACCA+AGG | + | chr7_4:53365358-53365377 | Msa1162600:CDS | 45.0% | |
| ! | GTTTGTAAAAGCGTGGGAGT+CGG | - | chr7_4:53366035-53366054 | None:intergenic | 45.0% |
| ! | GCAAGGATAAGGGTTGATCA+AGG | + | chr7_4:53367205-53367224 | Msa1162600:CDS | 45.0% |
| ! | GGGTTGATCAAGGTAGAACT+TGG | + | chr7_4:53367215-53367234 | Msa1162600:CDS | 45.0% |
| TTCTATTACCCGAGCTAGTG+AGG | + | chr7_4:53367381-53367400 | Msa1162600:CDS | 45.0% | |
| ACCCCTTCTACAAATTCAGG+AGG | + | chr7_4:53367573-53367592 | Msa1162600:CDS | 45.0% | |
| !! | ATGATCCTTTAGGGTGGTCA+AGG | + | chr7_4:53368524-53368543 | Msa1162600:CDS | 45.0% |
| !! | TGATCCTTTAGGGTGGTCAA+GGG | + | chr7_4:53368525-53368544 | Msa1162600:CDS | 45.0% |
| TCAGTTTGGCGAAACCTCAA+TGG | + | chr7_4:53368561-53368580 | Msa1162600:CDS | 45.0% | |
| ATGGTTGTGGTTAGGTCGAA+TGG | + | chr7_4:53368580-53368599 | Msa1162600:CDS | 45.0% | |
| ! | GGTTAGGTCGAATGGTGTTA+TGG | + | chr7_4:53368588-53368607 | Msa1162600:CDS | 45.0% |
| !! | TAGGTCGAATGGTGTTATGG+AGG | + | chr7_4:53368591-53368610 | Msa1162600:CDS | 45.0% |
| GATCGCAACCAACTTGATGT+TGG | + | chr7_4:53368613-53368632 | Msa1162600:CDS | 45.0% | |
| ! | GGCCATAAAGCACTCTTTGT+TGG | + | chr7_4:53368634-53368653 | Msa1162600:CDS | 45.0% |
| !!! | TTTATTGATTTATTAAATAT+TGG | + | chr7_4:53368106-53368125 | Msa1162600:intron | 5.0% |
| TTCCCTTAGCATCACTGCCA+CGG | - | chr7_4:53365384-53365403 | None:intergenic | 50.0% | |
| ! | TGAGCGTGGTTACTAGCTCT+TGG | - | chr7_4:53365447-53365466 | None:intergenic | 50.0% |
| !! | CTTGAGTGGGCTAGTTGTCA+GGG | - | chr7_4:53365614-53365633 | None:intergenic | 50.0% |
| ! | ACTAGTGCTGCTACACCTCA+AGG | + | chr7_4:53366688-53366707 | Msa1162600:CDS | 50.0% |
| ! | CTAGTGCTGCTACACCTCAA+GGG | + | chr7_4:53366689-53366708 | Msa1162600:CDS | 50.0% |
| GCAGGTACTAACAAAGGAGG+AGG | + | chr7_4:53366948-53366967 | Msa1162600:intron | 50.0% | |
| TTGACGGGATCGCAAGGATA+AGG | + | chr7_4:53367194-53367213 | Msa1162600:CDS | 50.0% | |
| TGACGGGATCGCAAGGATAA+GGG | + | chr7_4:53367195-53367214 | Msa1162600:CDS | 50.0% | |
| !! | CCTTGCAACTTGTTAGGGCT+TGG | - | chr7_4:53367409-53367428 | None:intergenic | 50.0% |
| CCAAGCCCTAACAAGTTGCA+AGG | + | chr7_4:53367406-53367425 | Msa1162600:CDS | 50.0% | |
| GGGACCCCTTCTACAAATTC+AGG | + | chr7_4:53367570-53367589 | Msa1162600:CDS | 50.0% | |
| GGCAGCAGATCGTATGAAGT+TGG | + | chr7_4:53367890-53367909 | Msa1162600:intron | 50.0% | |
| !! | GACCTCGAAGAGCATCAGTT+TGG | + | chr7_4:53368547-53368566 | Msa1162600:CDS | 50.0% |
| TGGCGAAACCTCAATGGTTG+TGG | + | chr7_4:53368567-53368586 | Msa1162600:CDS | 50.0% | |
| CGACCTAACCACAACCATTG+AGG | - | chr7_4:53368578-53368597 | None:intergenic | 50.0% | |
| ! | TGGAAGTGACGGCACCATTT+TGG | - | chr7_4:53368672-53368691 | None:intergenic | 50.0% |
| !! | GCTTGAGTGGGCTAGTTGTC+AGG | - | chr7_4:53365615-53365634 | None:intergenic | 55.0% |
| !!! | GCTCTTTTCGGTGTCCTCAC+CGG | + | chr7_4:53366161-53366180 | Msa1162600:intron | 55.0% |
| ATACAGATCCCTTGCCGGTG+AGG | - | chr7_4:53366178-53366197 | None:intergenic | 55.0% | |
| ACGAGTTTGACGGGATCGCA+AGG | + | chr7_4:53367188-53367207 | Msa1162600:CDS | 55.0% | |
| GCTTGGTTCCTCACTAGCTC+GGG | - | chr7_4:53367392-53367411 | None:intergenic | 55.0% | |
| ! | GGCTTGGTTCCTCACTAGCT+CGG | - | chr7_4:53367393-53367412 | None:intergenic | 55.0% |
| AGGTCCCTTGACCACCCTAA+AGG | - | chr7_4:53368532-53368551 | None:intergenic | 55.0% | |
| CGCCAAACTGATGCTCTTCG+AGG | - | chr7_4:53368552-53368571 | None:intergenic | 55.0% | |
| ACCTGCATTCACCAAGGCCG+TGG | + | chr7_4:53365364-53365383 | Msa1162600:CDS | 60.0% | |
| TAGCATCACTGCCACGGCCT+TGG | - | chr7_4:53365378-53365397 | None:intergenic | 60.0% | |
| AGGCCGTGGCAGTGATGCTA+AGG | + | chr7_4:53365378-53365397 | Msa1162600:CDS | 60.0% | |
| GGCCGTGGCAGTGATGCTAA+GGG | + | chr7_4:53365379-53365398 | Msa1162600:CDS | 60.0% | |
| !! | TTTCGGTGTCCTCACCGGCA+AGG | + | chr7_4:53366166-53366185 | Msa1162600:intron | 60.0% |
| !! | TTCGGTGTCCTCACCGGCAA+GGG | + | chr7_4:53366167-53366186 | Msa1162600:intron | 60.0% |
| GCCACGGCCTTGGTGAATGC+AGG | - | chr7_4:53365368-53365387 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 53365328 | 53368717 | 53365328 | ID=Msa1162600;Name=Msa1162600 |
| chr7_4 | mRNA | 53365328 | 53368717 | 53365328 | ID=Msa1162600-mRNA-1;Parent=Msa1162600;Name=Msa1162600-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.83|1|1|6|0|416 |
| chr7_4 | exon | 53365328 | 53365453 | 53365328 | ID=Msa1162600-mRNA-1:exon:15417;Parent=Msa1162600-mRNA-1 |
| chr7_4 | exon | 53366325 | 53366736 | 53366325 | ID=Msa1162600-mRNA-1:exon:15418;Parent=Msa1162600-mRNA-1 |
| chr7_4 | exon | 53366952 | 53367079 | 53366952 | ID=Msa1162600-mRNA-1:exon:15419;Parent=Msa1162600-mRNA-1 |
| chr7_4 | exon | 53367154 | 53367427 | 53367154 | ID=Msa1162600-mRNA-1:exon:15420;Parent=Msa1162600-mRNA-1 |
| chr7_4 | exon | 53367559 | 53367643 | 53367559 | ID=Msa1162600-mRNA-1:exon:15421;Parent=Msa1162600-mRNA-1 |
| chr7_4 | exon | 53368492 | 53368717 | 53368492 | ID=Msa1162600-mRNA-1:exon:15422;Parent=Msa1162600-mRNA-1 |
| chr7_4 | CDS | 53365328 | 53365453 | 53365328 | ID=Msa1162600-mRNA-1:cds;Parent=Msa1162600-mRNA-1 |
| chr7_4 | CDS | 53366325 | 53366736 | 53366325 | ID=Msa1162600-mRNA-1:cds;Parent=Msa1162600-mRNA-1 |
| chr7_4 | CDS | 53366952 | 53367079 | 53366952 | ID=Msa1162600-mRNA-1:cds;Parent=Msa1162600-mRNA-1 |
| chr7_4 | CDS | 53367154 | 53367427 | 53367154 | ID=Msa1162600-mRNA-1:cds;Parent=Msa1162600-mRNA-1 |
| chr7_4 | CDS | 53367559 | 53367643 | 53367559 | ID=Msa1162600-mRNA-1:cds;Parent=Msa1162600-mRNA-1 |
| chr7_4 | CDS | 53368492 | 53368717 | 53368492 | ID=Msa1162600-mRNA-1:cds;Parent=Msa1162600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
