AlfalfaGEDB | Msa1162710

M. sativa cultivar zhongmu-4 / Msa1162710

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162710	XP_003612135.2	36.667	120	76	0	7	126	529	648	4.76e-11	74.3
Msa1162710	XP_003612135.2	75.155	161	23	3	98	241	933	1093	5.36e-55	201
Msa1162710	XP_003612135.2	80.153	131	20	1	5	135	359	483	1.04e-54	200

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162710	sp\|C0LGS2\|Y4361_ARATH	64.780	159	41	3	98	241	940	1098	7.48e-51	181
Msa1162710	sp\|C0LGS2\|Y4361_ARATH	48.966	145	71	2	7	151	358	499	1.17e-27	114
Msa1162710	sp\|C0LGS2\|Y4361_ARATH	36.667	120	76	0	7	126	430	549	7.18e-14	74.3
Msa1162710	sp\|C0LGS2\|Y4361_ARATH	34.783	115	75	0	7	121	454	568	3.96e-13	72.0
Msa1162710	sp\|C0LGS2\|Y4361_ARATH	40.741	108	64	0	10	117	529	636	4.43e-11	65.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162710	A0A7J8XXQ7	57.377	183	58	4	74	241	4	181	5.06e-58	193

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162710	MtrunA17_Chr5g0405191	75.155	161	23	3	98	241	933	1093	8.17e-59	200
Msa1162710	MtrunA17_Chr5g0405191	80.153	131	20	1	5	135	359	483	1.39e-58	200
Msa1162710	MtrunA17_Chr5g0405191	36.667	120	76	0	7	126	529	648	4.54e-15	74.3
Msa1162710	MtrunA17_Chr5g0405191	36.134	119	76	0	3	121	573	691	6.12e-14	71.2
Msa1162710	MtrunA17_Chr5g0405191	35.652	115	74	0	3	117	159	273	1.58e-13	69.7
Msa1162710	MtrunA17_Chr5g0405191	34.188	117	77	0	5	121	455	571	4.85e-13	68.6
Msa1162710	MtrunA17_Chr5g0405191	34.746	118	75	2	1	117	283	399	2.16e-12	66.6
Msa1162710	MtrunA17_Chr5g0405191	35.000	120	78	0	7	126	433	552	3.00e-12	66.2
Msa1162710	MtrunA17_Chr5g0405191	33.913	115	74	1	7	121	93	205	1.11e-11	64.3
Msa1162710	MtrunA17_Chr5g0405191	35.135	111	72	0	7	117	481	591	1.59e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162710	AT4G36180.1	64.780	159	41	3	98	241	940	1098	7.60e-52	181
Msa1162710	AT4G36180.1	48.966	145	71	2	7	151	358	499	1.19e-28	114
Msa1162710	AT4G36180.1	36.667	120	76	0	7	126	430	549	7.29e-15	74.3
Msa1162710	AT4G36180.1	34.783	115	75	0	7	121	454	568	4.03e-14	72.0
Msa1162710	AT4G36180.1	40.741	108	64	0	10	117	529	636	4.50e-12	65.9
Msa1162710	AT4G36180.1	36.283	113	70	2	7	117	284	396	1.46e-11	64.3
Msa1162710	AT1G75640.1	62.420	157	43	3	98	238	938	1094	5.38e-45	161
Msa1162710	AT1G75640.1	46.957	115	61	0	6	120	363	477	1.35e-24	102
Msa1162710	AT1G75640.1	31.405	121	83	0	6	126	435	555	1.29e-11	64.7
Msa1162710	AT1G75640.1	34.545	110	70	1	10	117	293	402	5.61e-11	62.8

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Find 45 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGAAGACATTGTGAAG+TGG	0.660204	7_4:-53470756	Msa1162710:CDS
AAGCGCATTTATCTGATTTC+GGG	0.228005	7_4:-53470963	Msa1162710:CDS
ACCAGAAGCAATCTTAACCA+GGG	0.629809	7_4:-53470863	Msa1162710:CDS
AGACCCAGAATCATCAGAAT+GGG	0.506179	7_4:-53470671	Msa1162710:CDS
AGACTAACGGTACCCACATC+AGG	0.475801	7_4:-53470934	Msa1162710:CDS
AGACTCTTTCGTGATTTCCC+TGG	0.498893	7_4:+53470846	None:intergenic
AGATGAAGACATTGTGAAGT+GGG	0.645221	7_4:-53470755	Msa1162710:CDS
ATAACAGAGTTACTAGAACC+TGG	0.575865	7_4:-53470706	Msa1162710:CDS
ATAATGAAATGTAGGTCCCT+TGG	0.546470	7_4:-53471500	Msa1162710:CDS
ATTCACTGGTGTTATTCTTG+TGG	0.477841	7_4:-53471525	Msa1162710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAATCAACAACACCAA+GGG	+	chr7_4:53470703-53470722	None:intergenic	30.0%
CTTAGTGATAACAAGTTTAG+TGG	-	chr7_4:53470933-53470952	Msa1162710:CDS	30.0%
GGTGACATTTATGATAGTAT+TGG	-	chr7_4:53470954-53470973	Msa1162710:CDS	30.0%
TTCAAAATCAACAACACCAA+GGG	+	chr7_4:53470703-53470722	None:intergenic	30.0%
CTTAGTGATAACAAGTTTAG+TGG	-	chr7_4:53470933-53470952	Msa1162710:CDS	30.0%
GGTGACATTTATGATAGTAT+TGG	-	chr7_4:53470954-53470973	Msa1162710:CDS	30.0%
CTGGCTAATAATTCATTCAC+TGG	-	chr7_4:53470645-53470664	Msa1162710:CDS	35.0%
ATAATGAAATGTAGGTCCCT+TGG	-	chr7_4:53470684-53470703	Msa1162710:CDS	35.0%
CTTCAAAATCAACAACACCA+AGG	+	chr7_4:53470704-53470723	None:intergenic	35.0%
GAAAAATGTTGGAACTTCAC+CGG	+	chr7_4:53470739-53470758	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	53470612	53471594	53470612	ID=Msa1162710;Name=Msa1162710
chr7_4	mRNA	53470612	53471594	53470612	ID=Msa1162710-mRNA-1;Parent=Msa1162710;Name=Msa1162710-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|1\|1\|1\|2\|0\|245
chr7_4	exon	53471237	53471594	53471237	ID=Msa1162710-mRNA-1:exon:15478;Parent=Msa1162710-mRNA-1
chr7_4	exon	53470612	53470991	53470612	ID=Msa1162710-mRNA-1:exon:15477;Parent=Msa1162710-mRNA-1
chr7_4	CDS	53471237	53471594	53471237	ID=Msa1162710-mRNA-1:cds;Parent=Msa1162710-mRNA-1
chr7_4	CDS	53470612	53470991	53470612	ID=Msa1162710-mRNA-1:cds;Parent=Msa1162710-mRNA-1

Gene Sequence

>Msa1162710

ATGCATTTTCCGGCCGGGTTGACGGAGTTGAAGCTGGCTAATAATTCATTCACTGGTGTTATTCTTGTGGAAATAATGAAATGTAGGTCCCTTGGTGTTGTTGATTTTGAAGGAAACAATTTTGCCGGTGAAGTTCCAACATTTTTCGGCAATGTGAAAGGGCTCAAGGTTTTATCACTTGGTGGAAATCGATTCATTGGTTCAGTTCCGGCGAGTTTTGGTAACCTTTCTTTACTTGAAACATTGAGTTTGAGAAGTAATAGTTTAAATGGAACTATGTCTGAGATGATATGGAGTTTGAGAAATTTGACAACTTTGGATCTTAGTGATAACAAGTTTAGTGGTGACATTTATGATAATTTCGAAGCGCATTTATCTGATTTCGGGTTAGAAAGACTAACGGTACCCACATCAGGAGAAGCAGCCTCCACTTCAACATCAGTTGGCACATTGAGTTATGTTTCACCAGAAGCAATCTTAACCAGGGAAATCACGAAAGAGTCTGATGTTTACAGCTTTGGCTTTGTGTTGTTGGAACTTCTAACAGGAAAGAGACCAGTAATGTTCACACAAGATGAAGACATTGTGAAGTGGGTGAAGAAACAACTTCAAAGGTGTCAAATAACAGAGTTACTAGAACCTGGTTTACTTGAATTAGACCCAGAATCATCAGAATGGGAAGAGTTTTTACTAGGTGTGAAAGTTGGTTTGCTAGAGAAAGCTAGAGTGAATCTTTAA

Protein sequence

>Msa1162710

MHFPAGLTELKLANNSFTGVILVEIMKCRSLGVVDFEGNNFAGEVPTFFGNVKGLKVLSLGGNRFIGSVPASFGNLSLLETLSLRSNSLNGTMSEMIWSLRNLTTLDLSDNKFSGDIYDNFEAHLSDFGLERLTVPTSGEAASTSTSVGTLSYVSPEAILTREITKESDVYSFGFVLLELLTGKRPVMFTQDEDIVKWVKKQLQRCQITELLEPGLLELDPESSEWEEFLLGVKVGLLEKARVNL*