AlfalfaGEDB | Msa1163030

M. sativa cultivar zhongmu-4 / Msa1163030

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163030	AES81523.1	58.333	72	17	2	42	100	78	149	3.32e-15	82.0
Msa1163030	AES81523.1	93.590	156	10	0	103	258	6	161	6.69e-94	283

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163030	G7KWB3	58.333	72	17	2	42	100	78	149	1.59e-15	82.0
Msa1163030	G7KWB3	93.590	156	10	0	103	258	6	161	3.19e-94	283

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1163030	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163030	MtrunA17_Chr7g0258981	93.590	156	10	0	103	258	6	161	6.15e-98	283
Msa1163030	MtrunA17_Chr7g0258981	58.333	72	17	2	42	100	78	149	3.06e-19	82.0
Msa1163030	MtrunA17_Chr3g0080591	47.959	98	37	3	1	87	1	95	5.93e-19	80.5
Msa1163030	MtrunA17_Chr3g0080591	48.352	91	23	1	169	235	32	122	2.68e-17	76.3

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 75 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTTCGTGAAATTTG+TGG	0.482242	7_4:+54082794	None:intergenic
AAAATTGGAATCTCTGGTAT+AGG	0.429793	7_4:+54082668	None:intergenic
AACAACGTAGTGTGTGATGA+AGG	0.612595	7_4:+54078192	None:intergenic
AACATAGTGTGAGATGAAGG+TGG	0.688373	7_4:+54082743	None:intergenic
AACGTAGTGTGTGATGAAGG+TGG	0.740234	7_4:+54078195	None:intergenic
AAGAATTACCAGTGGTGTGG+CGG	0.548905	7_4:-54077993	Msa1163030:CDS
AAGATCTCGTGCAGTTCTGA+AGG	0.551614	7_4:+54078308	None:intergenic
AATAATATCGATGGATCTTT+GGG	0.246908	7_4:-54078072	Msa1163030:CDS
ACAATTGGAACCTCTGGTAT+AGG	0.433089	7_4:+54078117	None:intergenic
ACCACCGGTCGTTCCTCAGT+TGG	0.542730	7_4:+54082554	None:intergenic

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCTTCGTGAAATTTG+TGG	+	chr7_4:54078014-54078033	None:intergenic	30.0%
AAAATTGGAATCTCTGGTAT+AGG	+	chr7_4:54078140-54078159	None:intergenic	30.0%
AATTAACAACCATATCATGC+CGG	-	chr7_4:54078637-54078656	Msa1163030:intron	30.0%
TGGATGGAAAATGATGTAAT+TGG	-	chr7_4:54078934-54078953	Msa1163030:intron	30.0%
TCTCTTAACACCTAACAAAT+TGG	-	chr7_4:54079114-54079133	Msa1163030:intron	30.0%
AAAAAGTTCATTGTGAACAC+GGG	+	chr7_4:54079464-54079483	None:intergenic	30.0%
CACATATAGTTCAGTTCATT+TGG	+	chr7_4:54079905-54079924	None:intergenic	30.0%
GGGCCAATTTAAGTAAAATT+TGG	+	chr7_4:54080133-54080152	None:intergenic	30.0%
TGTACAAAGTTTCATGTAGT+AGG	+	chr7_4:54080187-54080206	None:intergenic	30.0%
ACTAGTTACAGTAGGAAATA+CGG	-	chr7_4:54080206-54080225	Msa1163030:intron	30.0%

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	54077951	54082876	54077951	ID=Msa1163030;Name=Msa1163030
chr7_4	mRNA	54077951	54082876	54077951	ID=Msa1163030-mRNA-1;Parent=Msa1163030;Name=Msa1163030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|1\|0\|0\|3\|0\|258
chr7_4	exon	54082660	54082876	54082660	ID=Msa1163030-mRNA-1:exon:15672;Parent=Msa1163030-mRNA-1
chr7_4	exon	54082543	54082626	54082543	ID=Msa1163030-mRNA-1:exon:15671;Parent=Msa1163030-mRNA-1
chr7_4	exon	54077951	54078426	54077951	ID=Msa1163030-mRNA-1:exon:15670;Parent=Msa1163030-mRNA-1
chr7_4	CDS	54082660	54082876	54082660	ID=Msa1163030-mRNA-1:cds;Parent=Msa1163030-mRNA-1
chr7_4	CDS	54082543	54082626	54082543	ID=Msa1163030-mRNA-1:cds;Parent=Msa1163030-mRNA-1
chr7_4	CDS	54077951	54078426	54077951	ID=Msa1163030-mRNA-1:cds;Parent=Msa1163030-mRNA-1

Gene Sequence

>Msa1163030

ATGGTGAAAAACCAAAATGAAAACAAGACACCATTGACAACATTCATACCACCAGCAACACCACAAATTTCACGAAGAGTTTTTTCACGCCGCAATGGACCACCACTACCACCACCTTCATCTCACACTATGTTTCCCATGCATGGACGTGGTAATTATACCCGTCGTTTTCATCCATACATGAGGCCTATACCAGAGATTCCAATTTTCCCTACTCGGAGAGAATTGGATCGTCTTTCTTTGATTGACAAGCCGGCTGATCTTGCTCCAACTGAGGAACGACCGGTGGTGTGGGGTGATAATATTGAACTCCTATCTGAATCAGATGATGAGAGCAGTACTGGCAGCAGCATCATTACTAACGTTGCTCCTATTCCATGCAACCATTGCCATGAAACCTTCAGAACTGCACGAGATCTTTCTTGGCACCAAAGCACATACACAATTTGCAACATAAATCAGGCTTTATTGAGACTAAACAACACAAACCACATTGGACCACCATCTCCACCACCTTCATCACACACTACGTTGTTTCCTATGCATGGAAGCGGTAATTATAACCGCCGTTTTCATCCATACATGAGGCCTATACCAGAGGTTCCAATTGTCTCTCGTACCGATCATGATTACAATAATATCGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCGACAAGCCGATTGATTCAGCTCCAACTGAAGAATTACCAGTGGTGTGGCGGGATGGAAGCACCAATGACATCAACCTTGATTTGAAGCTCTAG

Protein sequence

>Msa1163030

MVKNQNENKTPLTTFIPPATPQISRRVFSRRNGPPLPPPSSHTMFPMHGRGNYTRRFHPYMRPIPEIPIFPTRRELDRLSLIDKPADLAPTEERPVVWGDNIELLSESDDESSTGSSIITNVAPIPCNHCHETFRTARDLSWHQSTYTICNINQALLRLNNTNHIGPPSPPPSSHTTLFPMHGSGNYNRRFHPYMRPIPEVPIVSRTDHDYNNIDGSLGRTMDLISLIDKPIDSAPTEELPVVWRDGSTNDINLDLKL*