Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163030 | AES81523.1 | 58.333 | 72 | 17 | 2 | 42 | 100 | 78 | 149 | 3.32e-15 | 82.0 |
| Msa1163030 | AES81523.1 | 93.590 | 156 | 10 | 0 | 103 | 258 | 6 | 161 | 6.69e-94 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163030 | G7KWB3 | 58.333 | 72 | 17 | 2 | 42 | 100 | 78 | 149 | 1.59e-15 | 82.0 |
| Msa1163030 | G7KWB3 | 93.590 | 156 | 10 | 0 | 103 | 258 | 6 | 161 | 3.19e-94 | 283 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1163030 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163030 | MtrunA17_Chr7g0258981 | 93.590 | 156 | 10 | 0 | 103 | 258 | 6 | 161 | 6.15e-98 | 283 |
| Msa1163030 | MtrunA17_Chr7g0258981 | 58.333 | 72 | 17 | 2 | 42 | 100 | 78 | 149 | 3.06e-19 | 82.0 |
| Msa1163030 | MtrunA17_Chr3g0080591 | 47.959 | 98 | 37 | 3 | 1 | 87 | 1 | 95 | 5.93e-19 | 80.5 |
| Msa1163030 | MtrunA17_Chr3g0080591 | 48.352 | 91 | 23 | 1 | 169 | 235 | 32 | 122 | 2.68e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATATCGATGGATCTT+TGG | 0.212883 | 7_4:-54078073 | Msa1163030:CDS |
| AATAATATCGATGGATCTTT+GGG | 0.246908 | 7_4:-54078072 | Msa1163030:CDS |
| GAACTGCACGAGATCTTTCT+TGG | 0.257265 | 7_4:-54078302 | Msa1163030:CDS |
| TAAAGACGAGTAGGGAAAAT+TGG | 0.289389 | 7_4:+54082653 | None:intergenic |
| CGTGAAATTTGTGGTGTTGC+TGG | 0.294587 | 7_4:+54082803 | None:intergenic |
| CACAATTTGCAACATAAATC+AGG | 0.352461 | 7_4:-54078265 | Msa1163030:CDS |
| CAAATCAAGGTTGATGTCAT+TGG | 0.397831 | 7_4:+54077960 | None:intergenic |
| GTGCAGTTCTGAAGGTTTCA+TGG | 0.407889 | 7_4:+54078316 | None:intergenic |
| TGCAAATTGTGTATGTGCTT+TGG | 0.408651 | 7_4:+54078277 | None:intergenic |
| AAAATTGGAATCTCTGGTAT+AGG | 0.429793 | 7_4:+54082668 | None:intergenic |
| ACAATTGGAACCTCTGGTAT+AGG | 0.433089 | 7_4:+54078117 | None:intergenic |
| GTAGGGAAAATTGGAATCTC+TGG | 0.436918 | 7_4:+54082662 | None:intergenic |
| TGGCAATGGTTGCATGGAAT+AGG | 0.448209 | 7_4:+54078336 | None:intergenic |
| TTCTGAAGGTTTCATGGCAA+TGG | 0.457643 | 7_4:+54078322 | None:intergenic |
| TCAGATGATGAGAGCAGTAC+TGG | 0.465223 | 7_4:-54078384 | Msa1163030:CDS |
| TCAGTTGGAGCTGAATCAAT+CGG | 0.471657 | 7_4:+54078015 | None:intergenic |
| CAACCTAGAGCTTCAAATCA+AGG | 0.475468 | 7_4:+54077947 | None:intergenic |
| AAAACTCTTCGTGAAATTTG+TGG | 0.482242 | 7_4:+54082794 | None:intergenic |
| TGAGATGAAGGTGGTGGTAG+TGG | 0.484354 | 7_4:+54082752 | None:intergenic |
| CGAGAGACAATTGGAACCTC+TGG | 0.486624 | 7_4:+54078111 | None:intergenic |
| TGATCGGTACGAGAGACAAT+TGG | 0.489555 | 7_4:+54078102 | None:intergenic |
| TCTTTCTTTGATTGACAAGC+CGG | 0.490146 | 7_4:-54082588 | Msa1163030:CDS |
| TCTCATCATCTGATTCAGAT+AGG | 0.499444 | 7_4:+54078394 | None:intergenic |
| TGAGGAACGACCGGTGGTGT+GGG | 0.500328 | 7_4:-54082549 | Msa1163030:CDS |
| CACACTATGTTTCCCATGCA+TGG | 0.504244 | 7_4:-54082731 | Msa1163030:CDS |
| CTTCCATCCCGCCACACCAC+TGG | 0.504811 | 7_4:+54077985 | None:intergenic |
| CTGAGGAACGACCGGTGGTG+TGG | 0.509457 | 7_4:-54082550 | Msa1163030:CDS |
| TGCTCCAACTGAGGAACGAC+CGG | 0.510075 | 7_4:-54082558 | Msa1163030:CDS |
| TCTGGTATAGGCCTCATGTA+TGG | 0.510085 | 7_4:+54078129 | None:intergenic |
| ACCACTGGTAATTCTTCAGT+TGG | 0.510267 | 7_4:+54078000 | None:intergenic |
| TCTGGTATAGGCCTCATGTA+TGG | 0.510790 | 7_4:+54082680 | None:intergenic |
| CAACCTTGATTTGAAGCTCT+AGG | 0.512638 | 7_4:-54077950 | None:intergenic |
| TGTGATGAAGGTGGTGGAGA+TGG | 0.521845 | 7_4:+54078204 | None:intergenic |
| TAATTACCGCTTCCATGCAT+AGG | 0.528205 | 7_4:+54078168 | None:intergenic |
| TTACCAGTGGTGTGGCGGGA+TGG | 0.529438 | 7_4:-54077988 | Msa1163030:CDS |
| ACTACGTTGTTTCCTATGCA+TGG | 0.533302 | 7_4:-54078180 | Msa1163030:CDS |
| TCAGTTGGAGCAAGATCAGC+CGG | 0.538743 | 7_4:+54082569 | None:intergenic |
| ATAATTACCACGTCCATGCA+TGG | 0.540019 | 7_4:+54082718 | None:intergenic |
| ACCACCGGTCGTTCCTCAGT+TGG | 0.542730 | 7_4:+54082554 | None:intergenic |
| GTTTCATGGCAATGGTTGCA+TGG | 0.544580 | 7_4:+54078330 | None:intergenic |
| CATGATTACAATAATATCGA+TGG | 0.547714 | 7_4:-54078081 | Msa1163030:CDS |
| AAGAATTACCAGTGGTGTGG+CGG | 0.548905 | 7_4:-54077993 | Msa1163030:CDS |
| GCCTCATGTATGGATGAAAA+CGG | 0.550640 | 7_4:+54078139 | None:intergenic |
| AAGATCTCGTGCAGTTCTGA+AGG | 0.551614 | 7_4:+54078308 | None:intergenic |
| TTGTTTCCTATGCATGGAAG+CGG | 0.563807 | 7_4:-54078174 | Msa1163030:CDS |
| TGTTATGGTAAAGACGAGTA+GGG | 0.574420 | 7_4:+54082645 | None:intergenic |
| ATGTTTCCCATGCATGGACG+TGG | 0.575400 | 7_4:-54082725 | Msa1163030:CDS |
| GGCTGATCTTGCTCCAACTG+AGG | 0.575874 | 7_4:-54082567 | Msa1163030:CDS |
| GATATTATTGTAATCATGAT+CGG | 0.580073 | 7_4:+54078086 | None:intergenic |
| TGGATCTTTGGGGAGAACAA+TGG | 0.585871 | 7_4:-54078061 | Msa1163030:CDS |
| GGAAACATAGTGTGAGATGA+AGG | 0.586864 | 7_4:+54082740 | None:intergenic |
| TAATTACCACGTCCATGCAT+GGG | 0.590609 | 7_4:+54082719 | None:intergenic |
| CATGTATGGATGAAAACGAC+GGG | 0.590737 | 7_4:+54082694 | None:intergenic |
| AGAATTACCAGTGGTGTGGC+GGG | 0.597554 | 7_4:-54077992 | Msa1163030:CDS |
| GATGAAGGTGGTGGAGATGG+TGG | 0.599841 | 7_4:+54078207 | None:intergenic |
| GATGAAGGTGGTGGTAGTGG+TGG | 0.600039 | 7_4:+54082755 | None:intergenic |
| GGTGGTATGAATGTTGTCAA+TGG | 0.600830 | 7_4:+54082824 | None:intergenic |
| AACAACGTAGTGTGTGATGA+AGG | 0.612595 | 7_4:+54078192 | None:intergenic |
| GTGGAGATGGTGGTCCAATG+TGG | 0.619599 | 7_4:+54078217 | None:intergenic |
| CTAAACAACACAAACCACAT+TGG | 0.622975 | 7_4:-54078231 | Msa1163030:CDS |
| GAAATTTGTGGTGTTGCTGG+TGG | 0.624425 | 7_4:+54082806 | None:intergenic |
| GTACTATCACCCCACACCAC+CGG | 0.628478 | 7_4:+54082539 | None:intergenic |
| GAGGAACGACCGGTGGTGTG+GGG | 0.635962 | 7_4:-54082548 | Msa1163030:CDS |
| CTGAAGAATTACCAGTGGTG+TGG | 0.651724 | 7_4:-54077996 | Msa1163030:CDS |
| ATAGTGTGAGATGAAGGTGG+TGG | 0.665632 | 7_4:+54082746 | None:intergenic |
| TCATGTATGGATGAAAACGA+CGG | 0.675592 | 7_4:+54082693 | None:intergenic |
| GTGGTAGTGGTGGTCCATTG+CGG | 0.679358 | 7_4:+54082765 | None:intergenic |
| TCCAACTGAGGAACGACCGG+TGG | 0.682555 | 7_4:-54082555 | Msa1163030:CDS |
| ATACATGAGGCCTATACCAG+AGG | 0.686494 | 7_4:-54078127 | Msa1163030:CDS |
| AACATAGTGTGAGATGAAGG+TGG | 0.688373 | 7_4:+54082743 | None:intergenic |
| TCCAACTGAAGAATTACCAG+TGG | 0.699300 | 7_4:-54078001 | Msa1163030:CDS |
| GTAGTGTGTGATGAAGGTGG+TGG | 0.707674 | 7_4:+54078198 | None:intergenic |
| ATAATATCGATGGATCTTTG+GGG | 0.708326 | 7_4:-54078071 | Msa1163030:CDS |
| AACGTAGTGTGTGATGAAGG+TGG | 0.740234 | 7_4:+54078195 | None:intergenic |
| TCATGTATGGATGAAAACGG+CGG | 0.744847 | 7_4:+54078142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATTTTTAA+AGG | - | chr7_4:54080993-54081012 | Msa1163030:intron | 0.0% |
| !!! | TATATATATATATTTTTAAA+GGG | - | chr7_4:54080994-54081013 | Msa1163030:intron | 0.0% |
| !! | AAAAAAATACATCAATTTAA+AGG | - | chr7_4:54078883-54078902 | Msa1163030:intron | 10.0% |
| !! | AAAAAATACATCAATTTAAA+GGG | - | chr7_4:54078884-54078903 | Msa1163030:intron | 10.0% |
| !!! | TATATATATTTGCAATATTT+TGG | + | chr7_4:54079197-54079216 | None:intergenic | 10.0% |
| !! | TTTATATATAGTATAGATAA+AGG | + | chr7_4:54080550-54080569 | None:intergenic | 10.0% |
| !!! | ATAAAGAAAATACATATTTT+TGG | - | chr7_4:54080565-54080584 | Msa1163030:intron | 10.0% |
| !!! | TAAAGAAAATACATATTTTT+GGG | - | chr7_4:54080566-54080585 | Msa1163030:intron | 10.0% |
| !!! | TATATATATATATTTTGTTG+TGG | - | chr7_4:54080840-54080859 | Msa1163030:intron | 10.0% |
| !! | TATATATATATATATATGCA+AGG | + | chr7_4:54080885-54080904 | None:intergenic | 10.0% |
| !!! | TAAAATCATTTATTTTTTGA+CGG | - | chr7_4:54081919-54081938 | Msa1163030:intron | 10.0% |
| !!! | ATTCAAATATATTTTTTGAA+AGG | + | chr7_4:54082078-54082097 | None:intergenic | 10.0% |
| !!! | ATTAATTCCTATATTTTTTT+TGG | - | chr7_4:54082199-54082218 | Msa1163030:intron | 10.0% |
| !!! | TTTTAATCCAAAAAAAATAT+AGG | + | chr7_4:54082209-54082228 | None:intergenic | 10.0% |
| !!! | ATGGTTTTATAATTATGTAA+TGG | - | chr7_4:54078370-54078389 | Msa1163030:CDS | 15.0% |
| !!! | TGGTTTTATAATTATGTAAT+GGG | - | chr7_4:54078371-54078390 | Msa1163030:CDS | 15.0% |
| !!! | TTTTTTAATTTGTCTGATAT+CGG | - | chr7_4:54078455-54078474 | Msa1163030:intron | 15.0% |
| !!! | ATTAATGAAATGTTTTAGTT+TGG | - | chr7_4:54078553-54078572 | Msa1163030:intron | 15.0% |
| !!! | TTAATGAAATGTTTTAGTTT+GGG | - | chr7_4:54078554-54078573 | Msa1163030:intron | 15.0% |
| !!! | AAAAAAAAAAAAAGTATCAG+AGG | + | chr7_4:54078682-54078701 | None:intergenic | 15.0% |
| !! | AAAGAAAATATATTAGTAGA+TGG | + | chr7_4:54078856-54078875 | None:intergenic | 15.0% |
| !! | AAAAATACATCAATTTAAAG+GGG | - | chr7_4:54078885-54078904 | Msa1163030:intron | 15.0% |
| !!! | TACATATTTCATTTTTTTGA+AGG | - | chr7_4:54079016-54079035 | Msa1163030:intron | 15.0% |
| !!! | ACATATTTCATTTTTTTGAA+GGG | - | chr7_4:54079017-54079036 | Msa1163030:intron | 15.0% |
| !! | ATCAAACATATATTGTTTAA+AGG | - | chr7_4:54079681-54079700 | Msa1163030:intron | 15.0% |
| !!! | ATTCCAAATTTTACTTAAAT+TGG | - | chr7_4:54080127-54080146 | Msa1163030:intron | 15.0% |
| !!! | AAAGAAAATACATATTTTTG+GGG | - | chr7_4:54080567-54080586 | Msa1163030:intron | 15.0% |
| !!! | ATATTTTATCGAATAGAAAA+TGG | - | chr7_4:54081026-54081045 | Msa1163030:intron | 15.0% |
| !! | AATATACTAGGAATTAATTA+GGG | + | chr7_4:54081331-54081350 | None:intergenic | 15.0% |
| !! | AAATATACTAGGAATTAATT+AGG | + | chr7_4:54081332-54081351 | None:intergenic | 15.0% |
| !!! | TTAATTCCTAGTATATTTTT+CGG | - | chr7_4:54081334-54081353 | Msa1163030:intron | 15.0% |
| !!! | TTTAATTTTCAAAAAGTTAC+GGG | + | chr7_4:54081728-54081747 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTCAAAAAGTTA+CGG | + | chr7_4:54081729-54081748 | None:intergenic | 15.0% |
| !! | TTCTATTCAAAATAAAAACT+AGG | + | chr7_4:54081848-54081867 | None:intergenic | 15.0% |
| !!! | AAAATCATTTATTTTTTGAC+GGG | - | chr7_4:54081920-54081939 | Msa1163030:intron | 15.0% |
| !!! | TAATTAATATCAGTTGATTT+TGG | - | chr7_4:54082025-54082044 | Msa1163030:intron | 15.0% |
| !! | AAAATATAGGAATTAATTAG+AGG | + | chr7_4:54082196-54082215 | None:intergenic | 15.0% |
| !! | TTAGATTGGAAAAAAAAATA+TGG | + | chr7_4:54082350-54082369 | None:intergenic | 15.0% |
| !! | AAAATTCATCAATGTTGTTA+TGG | + | chr7_4:54078178-54078197 | None:intergenic | 20.0% |
| !!! | AACAACATTGATGAATTTTT+AGG | - | chr7_4:54078179-54078198 | Msa1163030:CDS | 20.0% |
| !!! | ACAACATTGATGAATTTTTA+GGG | - | chr7_4:54078180-54078199 | Msa1163030:CDS | 20.0% |
| !!! | GGTTTTATAATTATGTAATG+GGG | - | chr7_4:54078372-54078391 | Msa1163030:CDS | 20.0% |
| !!! | TCATTGTTTTGATTTTCATT+AGG | - | chr7_4:54078431-54078450 | Msa1163030:intron | 20.0% |
| !!! | CATTGTTTTGATTTTCATTA+GGG | - | chr7_4:54078432-54078451 | Msa1163030:intron | 20.0% |
| !! | TAAATTAAACTCATTTCAAG+AGG | + | chr7_4:54078609-54078628 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTATCTAGTTGTC+CGG | - | chr7_4:54078695-54078714 | Msa1163030:intron | 20.0% |
| !!! | CATATTTCATTTTTTTGAAG+GGG | - | chr7_4:54079018-54079037 | Msa1163030:intron | 20.0% |
| !!! | TTTAACATAACCAATTTGTT+AGG | + | chr7_4:54079127-54079146 | None:intergenic | 20.0% |
| !!! | CATATATCACCATTTTTTTA+GGG | - | chr7_4:54080240-54080259 | Msa1163030:intron | 20.0% |
| !!! | ATATATCACCATTTTTTTAG+GGG | - | chr7_4:54080241-54080260 | Msa1163030:intron | 20.0% |
| !! | TATTCGATAAAATATATGCA+AGG | + | chr7_4:54081021-54081040 | None:intergenic | 20.0% |
| !! | TTGAATATATGTAAGTGTAA+TGG | + | chr7_4:54081199-54081218 | None:intergenic | 20.0% |
| !! | GGAATTAAGAAAAATATACT+AGG | + | chr7_4:54081343-54081362 | None:intergenic | 20.0% |
| !! | TTTAAACCGAAAAATATACT+AGG | + | chr7_4:54081364-54081383 | None:intergenic | 20.0% |
| !!! | ATATCCCTTTTTATATGATT+GGG | + | chr7_4:54081416-54081435 | None:intergenic | 20.0% |
| !!! | AATATCCCTTTTTATATGAT+TGG | + | chr7_4:54081417-54081436 | None:intergenic | 20.0% |
| !! | TTTGGACAAAAAATATTGTT+GGG | + | chr7_4:54081785-54081804 | None:intergenic | 20.0% |
| !! | AATAGAAAATACCAATTTGT+AGG | - | chr7_4:54081861-54081880 | Msa1163030:intron | 20.0% |
| !! | GATATTATTGTAATCATGAT+CGG | + | chr7_4:54082722-54082741 | None:intergenic | 20.0% |
| ! | AAAAACTAATCAAAAGACAG+AGG | + | chr7_4:54078491-54078510 | None:intergenic | 25.0% |
| ! | TATTAGTAGATGGAAGTAAA+AGG | + | chr7_4:54078846-54078865 | None:intergenic | 25.0% |
| ! | TAAAAAGTTCATTGTGAACA+CGG | + | chr7_4:54079465-54079484 | None:intergenic | 25.0% |
| ! | TAAATATAGTTCAACTCGTT+TGG | + | chr7_4:54080015-54080034 | None:intergenic | 25.0% |
| ! | AAAAAATGGTGATATATGGT+TGG | + | chr7_4:54080238-54080257 | None:intergenic | 25.0% |
| ! | CCTAAAAAAATGGTGATATA+TGG | + | chr7_4:54080242-54080261 | None:intergenic | 25.0% |
| !!! | CCATATATCACCATTTTTTT+AGG | - | chr7_4:54080239-54080258 | Msa1163030:intron | 25.0% |
| !! | TATGTCCCTTTGTTATATAT+AGG | - | chr7_4:54080277-54080296 | Msa1163030:intron | 25.0% |
| !! | ATGTCCCTTTGTTATATATA+GGG | - | chr7_4:54080278-54080297 | Msa1163030:intron | 25.0% |
| !! | GGTTAGAAATTCTCTTTTTA+AGG | - | chr7_4:54080385-54080404 | Msa1163030:intron | 25.0% |
| !!! | TCTTTTTAAGGAGAATAAGT+GGG | - | chr7_4:54080397-54080416 | Msa1163030:intron | 25.0% |
| ! | AAAGCTCGAGAAAATTAATA+TGG | + | chr7_4:54080504-54080523 | None:intergenic | 25.0% |
| ! | CTTATTGACACATTTGTTTA+AGG | + | chr7_4:54080617-54080636 | None:intergenic | 25.0% |
| ! | TTAAAAATGACCAATCATGA+TGG | + | chr7_4:54081527-54081546 | None:intergenic | 25.0% |
| ! | CATAATTGTAAGATAACTGA+TGG | + | chr7_4:54081760-54081779 | None:intergenic | 25.0% |
| ! | CATCAGTTATCTTACAATTA+TGG | - | chr7_4:54081758-54081777 | Msa1163030:intron | 25.0% |
| ! | CTTTGGACAAAAAATATTGT+TGG | + | chr7_4:54081786-54081805 | None:intergenic | 25.0% |
| !!! | ATATTTTTTGTCCAAAGCAA+TGG | - | chr7_4:54081789-54081808 | Msa1163030:intron | 25.0% |
| ! | TCCTCAAAATTAGTCATTTA+GGG | - | chr7_4:54081821-54081840 | Msa1163030:intron | 25.0% |
| ! | TATTTATAGAGGATGTTTCA+AGG | + | chr7_4:54082268-54082287 | None:intergenic | 25.0% |
| ! | CATGATTACAATAATATCGA+TGG | - | chr7_4:54082724-54082743 | Msa1163030:CDS | 25.0% |
| ! | AATAATATCGATGGATCTTT+GGG | - | chr7_4:54082733-54082752 | Msa1163030:CDS | 25.0% |
| !!! | ATGGTGTCTTGTTTTCATTT+TGG | + | chr7_4:54077965-54077984 | None:intergenic | 30.0% |
| AAAACTCTTCGTGAAATTTG+TGG | + | chr7_4:54078014-54078033 | None:intergenic | 30.0% | |
| AAAATTGGAATCTCTGGTAT+AGG | + | chr7_4:54078140-54078159 | None:intergenic | 30.0% | |
| !! | TGAATTTTTAGGGAGAGAAT+TGG | - | chr7_4:54078190-54078209 | Msa1163030:CDS | 30.0% |
| ! | GTCTAGATTTTCAATGTTTG+TGG | - | chr7_4:54078516-54078535 | Msa1163030:intron | 30.0% |
| AATTAACAACCATATCATGC+CGG | - | chr7_4:54078637-54078656 | Msa1163030:intron | 30.0% | |
| !! | TGGCTAGAATTCACTTTTAA+GGG | - | chr7_4:54078718-54078737 | Msa1163030:intron | 30.0% |
| ! | GGGGACAATATTTTCTTTTA+CGG | - | chr7_4:54078904-54078923 | Msa1163030:intron | 30.0% |
| TGGATGGAAAATGATGTAAT+TGG | - | chr7_4:54078934-54078953 | Msa1163030:intron | 30.0% | |
| TCTCTTAACACCTAACAAAT+TGG | - | chr7_4:54079114-54079133 | Msa1163030:intron | 30.0% | |
| AAAAAGTTCATTGTGAACAC+GGG | + | chr7_4:54079464-54079483 | None:intergenic | 30.0% | |
| ! | CTTAGTTTGACTCGTTAATT+AGG | - | chr7_4:54079523-54079542 | Msa1163030:intron | 30.0% |
| CACATATAGTTCAGTTCATT+TGG | + | chr7_4:54079905-54079924 | None:intergenic | 30.0% | |
| ! | TAGTTCAAGTTTAACTCACT+TGG | - | chr7_4:54080033-54080052 | Msa1163030:intron | 30.0% |
| GGGCCAATTTAAGTAAAATT+TGG | + | chr7_4:54080133-54080152 | None:intergenic | 30.0% | |
| TGTACAAAGTTTCATGTAGT+AGG | + | chr7_4:54080187-54080206 | None:intergenic | 30.0% | |
| ACTAGTTACAGTAGGAAATA+CGG | - | chr7_4:54080206-54080225 | Msa1163030:intron | 30.0% | |
| ! | TGTCCCTTTGTTATATATAG+GGG | - | chr7_4:54080279-54080298 | Msa1163030:intron | 30.0% |
| AGTCCCCTATATATAACAAA+GGG | + | chr7_4:54080285-54080304 | None:intergenic | 30.0% | |
| AAGTCCCCTATATATAACAA+AGG | + | chr7_4:54080286-54080305 | None:intergenic | 30.0% | |
| ! | TCTCATGATTTTGTTACGTA+AGG | - | chr7_4:54080308-54080327 | Msa1163030:intron | 30.0% |
| ! | CTCATGATTTTGTTACGTAA+GGG | - | chr7_4:54080309-54080328 | Msa1163030:intron | 30.0% |
| ! | TATTTTGTCAAGTAGTCTAG+TGG | - | chr7_4:54080364-54080383 | Msa1163030:intron | 30.0% |
| !! | CTCTTTTTAAGGAGAATAAG+TGG | - | chr7_4:54080396-54080415 | Msa1163030:intron | 30.0% |
| !! | CTTTTTAAGGAGAATAAGTG+GGG | - | chr7_4:54080398-54080417 | Msa1163030:intron | 30.0% |
| CTCGAGAAAATTAATATGGT+TGG | + | chr7_4:54080500-54080519 | None:intergenic | 30.0% | |
| !!! | GAAAATACATATTTTTGGGG+TGG | - | chr7_4:54080570-54080589 | Msa1163030:intron | 30.0% |
| ATATATATATGCAAGGTCTG+AGG | + | chr7_4:54080878-54080897 | None:intergenic | 30.0% | |
| TGCATAATATACGCAAAGTT+CGG | - | chr7_4:54081271-54081290 | Msa1163030:intron | 30.0% | |
| !!! | TTAGGGATGACTTTTTTTGT+TGG | + | chr7_4:54081314-54081333 | None:intergenic | 30.0% |
| CATGCCCAATCATATAAAAA+GGG | - | chr7_4:54081409-54081428 | Msa1163030:intron | 30.0% | |
| GACAAAAAAATCCATTGCTT+TGG | + | chr7_4:54081803-54081822 | None:intergenic | 30.0% | |
| GTCCTCAAAATTAGTCATTT+AGG | - | chr7_4:54081820-54081839 | Msa1163030:intron | 30.0% | |
| ! | ACCCTAAATGACTAATTTTG+AGG | + | chr7_4:54081825-54081844 | None:intergenic | 30.0% |
| CGAATATTAGACCTACAAAT+TGG | + | chr7_4:54081875-54081894 | None:intergenic | 30.0% | |
| TGACGGGAAAAAGTTATTAT+TGG | - | chr7_4:54081936-54081955 | Msa1163030:intron | 30.0% | |
| GAAGTAGGATGTATTTATAG+AGG | + | chr7_4:54082279-54082298 | None:intergenic | 30.0% | |
| AAATACATCCTACTTCTCAA+AGG | - | chr7_4:54082283-54082302 | Msa1163030:intron | 30.0% | |
| CACAATTTGCAACATAAATC+AGG | - | chr7_4:54082540-54082559 | Msa1163030:intron | 30.0% | |
| CAATAATATCGATGGATCTT+TGG | - | chr7_4:54082732-54082751 | Msa1163030:CDS | 30.0% | |
| ATAATATCGATGGATCTTTG+GGG | - | chr7_4:54082734-54082753 | Msa1163030:CDS | 30.0% | |
| TCATGTATGGATGAAAACGA+CGG | + | chr7_4:54078115-54078134 | None:intergenic | 35.0% | |
| TAAAGACGAGTAGGGAAAAT+TGG | + | chr7_4:54078155-54078174 | None:intergenic | 35.0% | |
| TGTTATGGTAAAGACGAGTA+GGG | + | chr7_4:54078163-54078182 | None:intergenic | 35.0% | |
| TTGTTATGGTAAAGACGAGT+AGG | + | chr7_4:54078164-54078183 | None:intergenic | 35.0% | |
| TCTTTCTTTGATTGACAAGC+CGG | - | chr7_4:54078217-54078236 | Msa1163030:CDS | 35.0% | |
| ! | GGTGATAGTACGTTTGAAAT+AGG | - | chr7_4:54078278-54078297 | Msa1163030:CDS | 35.0% |
| !!! | TTTTTTATCTAGTTGTCCGG+TGG | - | chr7_4:54078698-54078717 | Msa1163030:intron | 35.0% |
| TAAAAGTGAATTCTAGCCAC+CGG | + | chr7_4:54078717-54078736 | None:intergenic | 35.0% | |
| !! | GTGGCTAGAATTCACTTTTA+AGG | - | chr7_4:54078717-54078736 | Msa1163030:intron | 35.0% |
| !! | GGCTAGAATTCACTTTTAAG+GGG | - | chr7_4:54078719-54078738 | Msa1163030:intron | 35.0% |
| !! | TCACTTTTAAGGGGAATAAG+AGG | - | chr7_4:54078728-54078747 | Msa1163030:intron | 35.0% |
| CATTGCATTGTTATATGCAG+AGG | + | chr7_4:54078775-54078794 | None:intergenic | 35.0% | |
| ! | CATCATTTTCCATCCAGAAA+CGG | + | chr7_4:54078930-54078949 | None:intergenic | 35.0% |
| TTAGGTGTTAAGAGATGTTG+GGG | + | chr7_4:54079109-54079128 | None:intergenic | 35.0% | |
| GTTAGGTGTTAAGAGATGTT+GGG | + | chr7_4:54079110-54079129 | None:intergenic | 35.0% | |
| TGTTAGGTGTTAAGAGATGT+TGG | + | chr7_4:54079111-54079130 | None:intergenic | 35.0% | |
| !! | ACAGTTAGATTGCTTTTCTG+TGG | - | chr7_4:54079366-54079385 | Msa1163030:intron | 35.0% |
| ! | TTTTCAACTGAACCAAATCG+AGG | + | chr7_4:54079436-54079455 | None:intergenic | 35.0% |
| TCGACTCAATGATTACGTTT+AGG | + | chr7_4:54080107-54080126 | None:intergenic | 35.0% | |
| !! | ACAAGGGTTGGTAATAAACT+GGG | + | chr7_4:54080153-54080172 | None:intergenic | 35.0% |
| CTTTGTACACTAGTTACAGT+AGG | - | chr7_4:54080198-54080217 | Msa1163030:intron | 35.0% | |
| CTAGTTACAGTAGGAAATAC+GGG | - | chr7_4:54080207-54080226 | Msa1163030:intron | 35.0% | |
| AATGGTGATATATGGTTGGA+TGG | + | chr7_4:54080234-54080253 | None:intergenic | 35.0% | |
| GAGATATGCCCCTAAAAAAA+TGG | + | chr7_4:54080252-54080271 | None:intergenic | 35.0% | |
| GCATAATATACGCAAAGTTC+GGG | - | chr7_4:54081272-54081291 | Msa1163030:intron | 35.0% | |
| !!! | TGACTTTTTTTGTTGGTGTC+CGG | + | chr7_4:54081307-54081326 | None:intergenic | 35.0% |
| TATATGATTGGGCATGGTAT+TGG | + | chr7_4:54081405-54081424 | None:intergenic | 35.0% | |
| ! | CCTTTTTATATGATTGGGCA+TGG | + | chr7_4:54081411-54081430 | None:intergenic | 35.0% |
| CCATGCCCAATCATATAAAA+AGG | - | chr7_4:54081408-54081427 | Msa1163030:intron | 35.0% | |
| TAGAGGATGTTTCAAGGTAA+GGG | + | chr7_4:54082262-54082281 | None:intergenic | 35.0% | |
| ATAGAGGATGTTTCAAGGTA+AGG | + | chr7_4:54082263-54082282 | None:intergenic | 35.0% | |
| !!! | GAGGGAATTGGTTTTTAGAT+TGG | + | chr7_4:54082364-54082383 | None:intergenic | 35.0% |
| TCTCATCATCTGATTCAGAT+AGG | + | chr7_4:54082414-54082433 | None:intergenic | 35.0% | |
| TGCAAATTGTGTATGTGCTT+TGG | + | chr7_4:54082531-54082550 | None:intergenic | 35.0% | |
| CTAAACAACACAAACCACAT+TGG | - | chr7_4:54082574-54082593 | Msa1163030:CDS | 35.0% | |
| !! | CAAATCAAGGTTGATGTCAT+TGG | + | chr7_4:54082848-54082867 | None:intergenic | 35.0% |
| GGTGGTATGAATGTTGTCAA+TGG | + | chr7_4:54077984-54078003 | None:intergenic | 40.0% | |
| AACATAGTGTGAGATGAAGG+TGG | + | chr7_4:54078065-54078084 | None:intergenic | 40.0% | |
| GGAAACATAGTGTGAGATGA+AGG | + | chr7_4:54078068-54078087 | None:intergenic | 40.0% | |
| TAATTACCACGTCCATGCAT+GGG | + | chr7_4:54078089-54078108 | None:intergenic | 40.0% | |
| ATAATTACCACGTCCATGCA+TGG | + | chr7_4:54078090-54078109 | None:intergenic | 40.0% | |
| CATGTATGGATGAAAACGAC+GGG | + | chr7_4:54078114-54078133 | None:intergenic | 40.0% | |
| !! | GTCGTTTTCATCCATACATG+AGG | - | chr7_4:54078114-54078133 | Msa1163030:CDS | 40.0% |
| GTAGGGAAAATTGGAATCTC+TGG | + | chr7_4:54078146-54078165 | None:intergenic | 40.0% | |
| !! | TTTGTTGTTGTTGCTGTTGC+TGG | + | chr7_4:54078309-54078328 | None:intergenic | 40.0% |
| ! | CGACAATGATTTGAAGCTCT+AGG | - | chr7_4:54078340-54078359 | Msa1163030:CDS | 40.0% |
| !! | TGAAGCTCTAGGTTGATCTA+TGG | - | chr7_4:54078351-54078370 | Msa1163030:CDS | 40.0% |
| TCTGATTGAAAACCTCAGAC+CGG | + | chr7_4:54078659-54078678 | None:intergenic | 40.0% | |
| !! | TAAGGGGAATAAGAGGTGTT+TGG | - | chr7_4:54078735-54078754 | Msa1163030:intron | 40.0% |
| !! | AAGGGGAATAAGAGGTGTTT+GGG | - | chr7_4:54078736-54078755 | Msa1163030:intron | 40.0% |
| ! | TTTTCTTTTACGGCCGTTTC+TGG | - | chr7_4:54078914-54078933 | Msa1163030:intron | 40.0% |
| GGGGCTTACTTTGAATTTGT+AGG | + | chr7_4:54079090-54079109 | None:intergenic | 40.0% | |
| GGTCGATAGTACTAGAAATG+AGG | - | chr7_4:54079387-54079406 | Msa1163030:intron | 40.0% | |
| ! | CGTGTGAACATTAAGAGTGT+CGG | + | chr7_4:54079500-54079519 | None:intergenic | 40.0% |
| TGCGTGAATGATTACACACA+CGG | + | chr7_4:54079838-54079857 | None:intergenic | 40.0% | |
| !! | CACAAGGGTTGGTAATAAAC+TGG | + | chr7_4:54080154-54080173 | None:intergenic | 40.0% |
| CAGTTTATTACCAACCCTTG+TGG | - | chr7_4:54080152-54080171 | Msa1163030:intron | 40.0% | |
| TATTACCAACCCTTGTGGTT+AGG | - | chr7_4:54080157-54080176 | Msa1163030:intron | 40.0% | |
| TGTTACGTAAGGGACTTCTA+TGG | - | chr7_4:54080319-54080338 | Msa1163030:intron | 40.0% | |
| GTTACGTAAGGGACTTCTAT+GGG | - | chr7_4:54080320-54080339 | Msa1163030:intron | 40.0% | |
| TAAGCTCACTGGGACAATTA+GGG | + | chr7_4:54081232-54081251 | None:intergenic | 40.0% | |
| !!! | ACTTTTTTTGTTGGTGTCCG+GGG | + | chr7_4:54081305-54081324 | None:intergenic | 40.0% |
| !!! | GACTTTTTTTGTTGGTGTCC+GGG | + | chr7_4:54081306-54081325 | None:intergenic | 40.0% |
| ! | TCATGATGGTGAGATATGGT+TGG | + | chr7_4:54081513-54081532 | None:intergenic | 40.0% |
| ! | CCAATCATGATGGTGAGATA+TGG | + | chr7_4:54081517-54081536 | None:intergenic | 40.0% |
| CCATATCTCACCATCATGAT+TGG | - | chr7_4:54081514-54081533 | Msa1163030:intron | 40.0% | |
| TTGAATGCACGTACGTGTAA+TGG | + | chr7_4:54082164-54082183 | None:intergenic | 40.0% | |
| !! | TCAAGGTAAGGGCATGATTT+TGG | + | chr7_4:54082251-54082270 | None:intergenic | 40.0% |
| ! | GGTGAATACCTTTGAGAAGT+AGG | + | chr7_4:54082294-54082313 | None:intergenic | 40.0% |
| TGCAAGAAGCTAGAGAAATG+TGG | + | chr7_4:54082315-54082334 | None:intergenic | 40.0% | |
| ACCAATTCCCTCACTGAAAA+TGG | - | chr7_4:54082372-54082391 | Msa1163030:intron | 40.0% | |
| ! | TCCATTTTCAGTGAGGGAAT+TGG | + | chr7_4:54082376-54082395 | None:intergenic | 40.0% |
| ! | TCTGACTCCATTTTCAGTGA+GGG | + | chr7_4:54082382-54082401 | None:intergenic | 40.0% |
| ! | ATCTGACTCCATTTTCAGTG+AGG | + | chr7_4:54082383-54082402 | None:intergenic | 40.0% |
| ! | TTCTGAAGGTTTCATGGCAA+TGG | + | chr7_4:54082486-54082505 | None:intergenic | 40.0% |
| AACAACGTAGTGTGTGATGA+AGG | + | chr7_4:54082616-54082635 | None:intergenic | 40.0% | |
| ! | ACTACGTTGTTTCCTATGCA+TGG | - | chr7_4:54082625-54082644 | Msa1163030:intron | 40.0% |
| TTGTTTCCTATGCATGGAAG+CGG | - | chr7_4:54082631-54082650 | Msa1163030:intron | 40.0% | |
| TAATTACCGCTTCCATGCAT+AGG | + | chr7_4:54082640-54082659 | None:intergenic | 40.0% | |
| TCATGTATGGATGAAAACGG+CGG | + | chr7_4:54082666-54082685 | None:intergenic | 40.0% | |
| GCCTCATGTATGGATGAAAA+CGG | + | chr7_4:54078118-54078137 | None:intergenic | 40.0% | |
| ACAATTGGAACCTCTGGTAT+AGG | + | chr7_4:54082691-54082710 | None:intergenic | 40.0% | |
| TCAGTTGGAGCTGAATCAAT+CGG | + | chr7_4:54082793-54082812 | None:intergenic | 40.0% | |
| TCCAACTGAAGAATTACCAG+TGG | - | chr7_4:54082804-54082823 | Msa1163030:CDS | 40.0% | |
| ACCACTGGTAATTCTTCAGT+TGG | + | chr7_4:54082808-54082827 | None:intergenic | 40.0% | |
| !! | GAAATTTGTGGTGTTGCTGG+TGG | + | chr7_4:54078002-54078021 | None:intergenic | 45.0% |
| !! | CGTGAAATTTGTGGTGTTGC+TGG | + | chr7_4:54078005-54078024 | None:intergenic | 45.0% |
| !!! | AGAGTTTTTTCACGCCGCAA+TGG | - | chr7_4:54078026-54078045 | Msa1163030:CDS | 45.0% |
| ATAGTGTGAGATGAAGGTGG+TGG | + | chr7_4:54078062-54078081 | None:intergenic | 45.0% | |
| CACACTATGTTTCCCATGCA+TGG | - | chr7_4:54078074-54078093 | Msa1163030:CDS | 45.0% | |
| TCTGGTATAGGCCTCATGTA+TGG | + | chr7_4:54078128-54078147 | None:intergenic | 45.0% | |
| ATTGTTATATGCAGAGGCCG+GGG | + | chr7_4:54078769-54078788 | None:intergenic | 45.0% | |
| CATTGTTATATGCAGAGGCC+GGG | + | chr7_4:54078770-54078789 | None:intergenic | 45.0% | |
| GCATTGTTATATGCAGAGGC+CGG | + | chr7_4:54078771-54078790 | None:intergenic | 45.0% | |
| TGAGCATATCTCAGTTGGCA+GGG | + | chr7_4:54078800-54078819 | None:intergenic | 45.0% | |
| TGCCAACTGAGATATGCTCA+CGG | - | chr7_4:54078800-54078819 | Msa1163030:intron | 45.0% | |
| TGCATATCCAACCATCCAAC+TGG | - | chr7_4:54079254-54079273 | Msa1163030:intron | 45.0% | |
| GTTACTACGTGGAATCCAGT+TGG | + | chr7_4:54079272-54079291 | None:intergenic | 45.0% | |
| ACGTTAACGCAGTTACTACG+TGG | + | chr7_4:54079283-54079302 | None:intergenic | 45.0% | |
| GAACTCGTCTAACCTCGATT+TGG | - | chr7_4:54079421-54079440 | Msa1163030:intron | 45.0% | |
| TGTAATCATTCACGCACTCG+TGG | - | chr7_4:54079842-54079861 | Msa1163030:intron | 45.0% | |
| GTAATCATTCACGCACTCGT+GGG | - | chr7_4:54079843-54079862 | Msa1163030:intron | 45.0% | |
| ! | AAGGTCTGAGGTTCAAACTC+AGG | + | chr7_4:54080866-54080885 | None:intergenic | 45.0% |
| AAGCTCACTGGGACAATTAG+GGG | + | chr7_4:54081231-54081250 | None:intergenic | 45.0% | |
| CTAAGCTCACTGGGACAATT+AGG | + | chr7_4:54081233-54081252 | None:intergenic | 45.0% | |
| TCAGATGATGAGAGCAGTAC+TGG | - | chr7_4:54082421-54082440 | Msa1163030:intron | 45.0% | |
| TGGCAATGGTTGCATGGAAT+AGG | + | chr7_4:54082472-54082491 | None:intergenic | 45.0% | |
| GTTTCATGGCAATGGTTGCA+TGG | + | chr7_4:54082478-54082497 | None:intergenic | 45.0% | |
| !! | GTGCAGTTCTGAAGGTTTCA+TGG | + | chr7_4:54082492-54082511 | None:intergenic | 45.0% |
| ! | AAGATCTCGTGCAGTTCTGA+AGG | + | chr7_4:54082500-54082519 | None:intergenic | 45.0% |
| GAACTGCACGAGATCTTTCT+TGG | - | chr7_4:54082503-54082522 | Msa1163030:intron | 45.0% | |
| AACGTAGTGTGTGATGAAGG+TGG | + | chr7_4:54082613-54082632 | None:intergenic | 45.0% | |
| !! | GCCGTTTTCATCCATACATG+AGG | - | chr7_4:54082665-54082684 | Msa1163030:CDS | 45.0% |
| TCTGGTATAGGCCTCATGTA+TGG | + | chr7_4:54078128-54078147 | None:intergenic | 45.0% | |
| ATACATGAGGCCTATACCAG+AGG | - | chr7_4:54078127-54078146 | Msa1163030:CDS | 45.0% | |
| TGATCGGTACGAGAGACAAT+TGG | + | chr7_4:54082706-54082725 | None:intergenic | 45.0% | |
| ! | TGGATCTTTGGGGAGAACAA+TGG | - | chr7_4:54082744-54082763 | Msa1163030:CDS | 45.0% |
| CTGAAGAATTACCAGTGGTG+TGG | - | chr7_4:54082809-54082828 | Msa1163030:CDS | 45.0% | |
| AAGAATTACCAGTGGTGTGG+CGG | - | chr7_4:54082812-54082831 | Msa1163030:CDS | 45.0% | |
| !! | AAAAAATTTATTTATCAAAA+AGG | - | chr7_4:54079583-54079602 | Msa1163030:intron | 5.0% |
| !!! | ATTTAATTTTTCTTTTAAAA+AGG | - | chr7_4:54079631-54079650 | Msa1163030:intron | 5.0% |
| !!! | TTTATATTTATTTTTTTCAA+TGG | + | chr7_4:54080706-54080725 | None:intergenic | 5.0% |
| !!! | AAAAATAATTTTTTTTTACA+AGG | + | chr7_4:54080933-54080952 | None:intergenic | 5.0% |
| !!! | TATATATATATATTTTTACA+AGG | + | chr7_4:54080958-54080977 | None:intergenic | 5.0% |
| !! | ATTATTATTAAAATTAACTA+TGG | + | chr7_4:54081124-54081143 | None:intergenic | 5.0% |
| ! | TGAGATGAAGGTGGTGGTAG+TGG | + | chr7_4:54078056-54078075 | None:intergenic | 50.0% |
| ATGTTTCCCATGCATGGACG+TGG | - | chr7_4:54078080-54078099 | Msa1163030:CDS | 50.0% | |
| TCAGTTGGAGCAAGATCAGC+CGG | + | chr7_4:54078239-54078258 | None:intergenic | 50.0% | |
| AACCATATCATGCCGGTCTG+AGG | - | chr7_4:54078644-54078663 | Msa1163030:intron | 50.0% | |
| AACCTCAGACCGGCATGATA+TGG | + | chr7_4:54078649-54078668 | None:intergenic | 50.0% | |
| GTGAGCATATCTCAGTTGGC+AGG | + | chr7_4:54078801-54078820 | None:intergenic | 50.0% | |
| GCCAACTGAGATATGCTCAC+GGG | - | chr7_4:54078801-54078820 | Msa1163030:intron | 50.0% | |
| TCCCGTGAGCATATCTCAGT+TGG | + | chr7_4:54078805-54078824 | None:intergenic | 50.0% | |
| !! | CTTTTACGGCCGTTTCTGGA+TGG | - | chr7_4:54078918-54078937 | Msa1163030:intron | 50.0% |
| GTGGAATCCAGTTGGATGGT+TGG | + | chr7_4:54079264-54079283 | None:intergenic | 50.0% | |
| CTACGTGGAATCCAGTTGGA+TGG | + | chr7_4:54079268-54079287 | None:intergenic | 50.0% | |
| CAGCTCAAGTGCAGCTCATT+TGG | - | chr7_4:54080073-54080092 | Msa1163030:intron | 50.0% | |
| GTAGGCGATCCTAACCACAA+GGG | + | chr7_4:54080169-54080188 | None:intergenic | 50.0% | |
| AGTAGGCGATCCTAACCACA+AGG | + | chr7_4:54080170-54080189 | None:intergenic | 50.0% | |
| AGGAGAATAAGTGGGGTCTC+AGG | - | chr7_4:54080405-54080424 | Msa1163030:intron | 50.0% | |
| GGAGAATAAGTGGGGTCTCA+GGG | - | chr7_4:54080406-54080425 | Msa1163030:intron | 50.0% | |
| GAGAATAAGTGGGGTCTCAG+GGG | - | chr7_4:54080407-54080426 | Msa1163030:intron | 50.0% | |
| TCTCGTGAGCTTAGCTCAGT+TGG | + | chr7_4:54080448-54080467 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCACT+GGG | + | chr7_4:54081242-54081261 | None:intergenic | 50.0% | |
| ACCAACTGAGCTAAGCTCAC+TGG | + | chr7_4:54080444-54080463 | None:intergenic | 50.0% | |
| AAAGTTCGGGATTCGAACCC+CGG | - | chr7_4:54081285-54081304 | Msa1163030:intron | 50.0% | |
| !! | TGTGATGAAGGTGGTGGAGA+TGG | + | chr7_4:54082604-54082623 | None:intergenic | 50.0% |
| GTAGTGTGTGATGAAGGTGG+TGG | + | chr7_4:54082610-54082629 | None:intergenic | 50.0% | |
| CGAGAGACAATTGGAACCTC+TGG | + | chr7_4:54082697-54082716 | None:intergenic | 50.0% | |
| AGAATTACCAGTGGTGTGGC+GGG | - | chr7_4:54082813-54082832 | Msa1163030:CDS | 50.0% | |
| !! | GTGGTAGTGGTGGTCCATTG+CGG | + | chr7_4:54078043-54078062 | None:intergenic | 55.0% |
| !! | GATGAAGGTGGTGGTAGTGG+TGG | + | chr7_4:54078053-54078072 | None:intergenic | 55.0% |
| GGCTGATCTTGCTCCAACTG+AGG | - | chr7_4:54078238-54078257 | Msa1163030:CDS | 55.0% | |
| TGCTCCAACTGAGGAACGAC+CGG | - | chr7_4:54078247-54078266 | Msa1163030:CDS | 55.0% | |
| GTACTATCACCCCACACCAC+CGG | + | chr7_4:54078269-54078288 | None:intergenic | 55.0% | |
| ! | GGTGTTTGGGATTCGAACCC+CGG | - | chr7_4:54078749-54078768 | Msa1163030:intron | 55.0% |
| GCGATCCTAACCACAAGGGT+TGG | + | chr7_4:54080165-54080184 | None:intergenic | 55.0% | |
| CGTAAGGGACTTCTATGGGC+TGG | - | chr7_4:54080324-54080343 | Msa1163030:intron | 55.0% | |
| CCCAGTGAGCTTAGCTCAGT+TGG | - | chr7_4:54081239-54081258 | Msa1163030:intron | 55.0% | |
| ! | GTGGAGATGGTGGTCCAATG+TGG | + | chr7_4:54082591-54082610 | None:intergenic | 55.0% |
| !! | GATGAAGGTGGTGGAGATGG+TGG | + | chr7_4:54082601-54082620 | None:intergenic | 55.0% |
| TCCAACTGAGGAACGACCGG+TGG | - | chr7_4:54078250-54078269 | Msa1163030:CDS | 60.0% | |
| ACCACCGGTCGTTCCTCAGT+TGG | + | chr7_4:54078254-54078273 | None:intergenic | 60.0% | |
| TGAGGAACGACCGGTGGTGT+GGG | - | chr7_4:54078256-54078275 | Msa1163030:CDS | 60.0% | |
| ! | TTACCAGTGGTGTGGCGGGA+TGG | - | chr7_4:54082817-54082836 | Msa1163030:CDS | 60.0% |
| CTGAGGAACGACCGGTGGTG+TGG | - | chr7_4:54078255-54078274 | Msa1163030:CDS | 65.0% | |
| GAGGAACGACCGGTGGTGTG+GGG | - | chr7_4:54078257-54078276 | Msa1163030:CDS | 65.0% | |
| CTTCCATCCCGCCACACCAC+TGG | + | chr7_4:54082823-54082842 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54077951 | 54082876 | 54077951 | ID=Msa1163030;Name=Msa1163030 |
| chr7_4 | mRNA | 54077951 | 54082876 | 54077951 | ID=Msa1163030-mRNA-1;Parent=Msa1163030;Name=Msa1163030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|3|0|258 |
| chr7_4 | exon | 54082660 | 54082876 | 54082660 | ID=Msa1163030-mRNA-1:exon:15672;Parent=Msa1163030-mRNA-1 |
| chr7_4 | exon | 54082543 | 54082626 | 54082543 | ID=Msa1163030-mRNA-1:exon:15671;Parent=Msa1163030-mRNA-1 |
| chr7_4 | exon | 54077951 | 54078426 | 54077951 | ID=Msa1163030-mRNA-1:exon:15670;Parent=Msa1163030-mRNA-1 |
| chr7_4 | CDS | 54082660 | 54082876 | 54082660 | ID=Msa1163030-mRNA-1:cds;Parent=Msa1163030-mRNA-1 |
| chr7_4 | CDS | 54082543 | 54082626 | 54082543 | ID=Msa1163030-mRNA-1:cds;Parent=Msa1163030-mRNA-1 |
| chr7_4 | CDS | 54077951 | 54078426 | 54077951 | ID=Msa1163030-mRNA-1:cds;Parent=Msa1163030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
