AlfalfaGEDB | Msa1163040

M. sativa cultivar zhongmu-4 / Msa1163040

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163040	AES81523.1	54.167	72	20	2	42	100	78	149	5.63e-11	71.2
Msa1163040	AES81523.1	67.196	189	31	4	98	283	1	161	8.76e-67	215

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163040	G7KWB3	54.167	72	20	2	42	100	78	149	2.69e-11	71.2
Msa1163040	G7KWB3	67.196	189	31	4	98	283	1	161	4.18e-67	215

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TFs/TRs:

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Gene ID	Type	Classification
Msa1163040	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163040	MtrunA17_Chr7g0258981	67.196	189	31	4	98	283	1	161	8.05e-71	215
Msa1163040	MtrunA17_Chr7g0258981	54.167	72	20	2	42	100	78	149	5.18e-15	71.2
Msa1163040	MtrunA17_Chr3g0080591	48.980	98	36	4	1	87	1	95	2.63e-17	76.6
Msa1163040	MtrunA17_Chr3g0080591	40.769	130	49	4	168	272	8	134	6.39e-16	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 72 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTTTGTGAAAATTG+TGG	0.591357	7_4:+54107355	None:intergenic
AAAATTGGAATCTCTGGTAT+AGG	0.429793	7_4:+54107229	None:intergenic
AAACTGCACAAGATCTTTCT+TGG	0.245892	7_4:-54101837	Msa1163040:CDS
AACAACATGGTGTGTGATGA+AGG	0.556950	7_4:+54101673	None:intergenic
AACATAGTGTGAGATGAAGG+TGG	0.688373	7_4:+54107304	None:intergenic
AACATGGTGTGTGATGAAGG+TGG	0.787924	7_4:+54101676	None:intergenic
AACCTCTGGTATAGGCCTCA+TGG	0.524083	7_4:+54101609	None:intergenic
AATAATATTGATGGATCTTT+GGG	0.232329	7_4:-54101556	Msa1163040:CDS
ACAATTGGAACCTCTGGTAT+AGG	0.433089	7_4:+54101601	None:intergenic
ACACAATTTGCAACATAAAT+CGG	0.316739	7_4:-54101801	Msa1163040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGGAATCTCTGGTAT+AGG	+	chr7_4:54101624-54101643	None:intergenic	30.0%
AACATTGATGAATCTTTAGG+AGG	-	chr7_4:54101666-54101685	Msa1163040:CDS	30.0%
GTTGGACTTAATTATTGTCA+AGG	-	chr7_4:54101966-54101985	Msa1163040:CDS	30.0%
CAAAACTAATCAAAAGACAG+AGG	+	chr7_4:54102017-54102036	None:intergenic	30.0%
CAATGAAAGGGAAAACAAAT+TGG	-	chr7_4:54102258-54102277	Msa1163040:intron	30.0%
CAAATGAATACATCAATGTG+TGG	-	chr7_4:54102282-54102301	Msa1163040:intron	30.0%
ACATGCGTTGTTATATATAG+GGG	+	chr7_4:54102376-54102395	None:intergenic	30.0%
GAACATGCGTTGTTATATAT+AGG	+	chr7_4:54102378-54102397	None:intergenic	30.0%
TGCTTATAATAGTAATCGGA+TGG	+	chr7_4:54102650-54102669	None:intergenic	30.0%
CATTACCCAAACAATGAAAA+GGG	+	chr7_4:54103727-54103746	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	54101435	54107437	54101435	ID=Msa1163040;Name=Msa1163040
chr7_4	mRNA	54101435	54107437	54101435	ID=Msa1163040-mRNA-1;Parent=Msa1163040;Name=Msa1163040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|0\|0\|3\|0\|283
chr7_4	exon	54107221	54107437	54107221	ID=Msa1163040-mRNA-1:exon:15714;Parent=Msa1163040-mRNA-1
chr7_4	exon	54107104	54107187	54107104	ID=Msa1163040-mRNA-1:exon:15713;Parent=Msa1163040-mRNA-1
chr7_4	exon	54101435	54101985	54101435	ID=Msa1163040-mRNA-1:exon:15712;Parent=Msa1163040-mRNA-1
chr7_4	CDS	54107221	54107437	54107221	ID=Msa1163040-mRNA-1:cds;Parent=Msa1163040-mRNA-1
chr7_4	CDS	54107104	54107187	54107104	ID=Msa1163040-mRNA-1:cds;Parent=Msa1163040-mRNA-1
chr7_4	CDS	54101435	54101985	54101435	ID=Msa1163040-mRNA-1:cds;Parent=Msa1163040-mRNA-1

Gene Sequence

>Msa1163040

ATGGTGAAAAGCCAAAATGAAAACAACACACCATTGACAACATTCATACCACCAGCAACACCACAATTTTCACAAAGAGTTTTTTCACGCCGCAATGGACCACCACTACCACCACCTTCATCTCACACTATGTTTCCCATGTATGGACGTGGTAATTATAACCGTCGCTTTCGTCCATACATGAGGCCTATACCAGAGATTCCAATTTTCCCTGCTCGAGGAGCAATGGATCGTCTTTCTTTGATTGACAAGCCGGCTGATCTTGCTCCAATGGAGGAACGACTGGTGGTGTTGAGTGATGATGTTCAACTCTTATCTTATGATGAGAGCAGTACTGTCAGCAGCAACAATACTAACGTTGCTCCTACTCTTGTTCTTACTCTAACTCCAATCGAATTTCGATGCAACCATTGCCATAACACCTTCAAAACTGCACAAGATCTTTCTTGGCACCAAAGCTCATACACAATTTGCAACATAAATCGGGCTTTATTGAGACATAACAACACACCATCACAAACATTCATACCAACAACATCACAAGATTTACAAAGATCTTCTTTGTACCACATTGGACCACCATCTCCACCACCTTCATCACACACCATGTTGTTTCCTATGCATGGAAGTGGTAATTATGACCACCTTCATCCATCCATGAGGCCTATACCAGAGGTTCCAATTGTCTCTCGTACTCGTCATGATTACAATAATATTGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCGACAAGCCGATTGATTCTGCTCCAATTGAAGAAGTACCAGCGGTCTGGCAGGATGGAAACAACAATGACATCGACCTTGATTTGAAGCTTTAG

Protein sequence

>Msa1163040

MVKSQNENNTPLTTFIPPATPQFSQRVFSRRNGPPLPPPSSHTMFPMYGRGNYNRRFRPYMRPIPEIPIFPARGAMDRLSLIDKPADLAPMEERLVVLSDDVQLLSYDESSTVSSNNTNVAPTLVLTLTPIEFRCNHCHNTFKTAQDLSWHQSSYTICNINRALLRHNNTPSQTFIPTTSQDLQRSSLYHIGPPSPPPSSHTMLFPMHGSGNYDHLHPSMRPIPEVPIVSRTRHDYNNIDGSLGRTMDLISLIDKPIDSAPIEEVPAVWQDGNNNDIDLDLKL*