Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163040 | AES81523.1 | 54.167 | 72 | 20 | 2 | 42 | 100 | 78 | 149 | 5.63e-11 | 71.2 |
| Msa1163040 | AES81523.1 | 67.196 | 189 | 31 | 4 | 98 | 283 | 1 | 161 | 8.76e-67 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163040 | G7KWB3 | 54.167 | 72 | 20 | 2 | 42 | 100 | 78 | 149 | 2.69e-11 | 71.2 |
| Msa1163040 | G7KWB3 | 67.196 | 189 | 31 | 4 | 98 | 283 | 1 | 161 | 4.18e-67 | 215 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1163040 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163040 | MtrunA17_Chr7g0258981 | 67.196 | 189 | 31 | 4 | 98 | 283 | 1 | 161 | 8.05e-71 | 215 |
| Msa1163040 | MtrunA17_Chr7g0258981 | 54.167 | 72 | 20 | 2 | 42 | 100 | 78 | 149 | 5.18e-15 | 71.2 |
| Msa1163040 | MtrunA17_Chr3g0080591 | 48.980 | 98 | 36 | 4 | 1 | 87 | 1 | 95 | 2.63e-17 | 76.6 |
| Msa1163040 | MtrunA17_Chr3g0080591 | 40.769 | 130 | 49 | 4 | 168 | 272 | 8 | 134 | 6.39e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATATTGATGGATCTT+TGG | 0.189029 | 7_4:-54101557 | Msa1163040:CDS |
| AATAATATTGATGGATCTTT+GGG | 0.232329 | 7_4:-54101556 | Msa1163040:CDS |
| AAACTGCACAAGATCTTTCT+TGG | 0.245892 | 7_4:-54101837 | Msa1163040:CDS |
| CGACCTTGATTTGAAGCTTT+AGG | 0.290526 | 7_4:-54101434 | None:intergenic |
| ACACAATTTGCAACATAAAT+CGG | 0.316739 | 7_4:-54101801 | Msa1163040:CDS |
| TAAAGACGAGCAGGGAAAAT+TGG | 0.319007 | 7_4:+54107214 | None:intergenic |
| TGTGAAAATTGTGGTGTTGC+TGG | 0.325919 | 7_4:+54107364 | None:intergenic |
| CATGATTACAATAATATTGA+TGG | 0.344856 | 7_4:-54101565 | Msa1163040:CDS |
| CACACTATGTTTCCCATGTA+TGG | 0.373196 | 7_4:-54107292 | Msa1163040:CDS |
| TGTAAATCTTGTGATGTTGT+TGG | 0.389716 | 7_4:+54101736 | None:intergenic |
| CACAATTTGCAACATAAATC+GGG | 0.419218 | 7_4:-54101800 | Msa1163040:CDS |
| ACCGCTGGTACTTCTTCAAT+TGG | 0.421292 | 7_4:+54101484 | None:intergenic |
| TGTGATGAAGGTGGTGGAGA+TGG | 0.423532 | 7_4:+54101685 | None:intergenic |
| AAAATTGGAATCTCTGGTAT+AGG | 0.429793 | 7_4:+54107229 | None:intergenic |
| ACAATTGGAACCTCTGGTAT+AGG | 0.433089 | 7_4:+54101601 | None:intergenic |
| TGCAAATTGTGTATGAGCTT+TGG | 0.452975 | 7_4:+54101812 | None:intergenic |
| GCAGGGAAAATTGGAATCTC+TGG | 0.454312 | 7_4:+54107223 | None:intergenic |
| CAACCTAAAGCTTCAAATCA+AGG | 0.460309 | 7_4:+54101431 | None:intergenic |
| TGCTCCAATGGAGGAACGAC+TGG | 0.478203 | 7_4:-54107119 | Msa1163040:CDS |
| TGACGAGTACGAGAGACAAT+TGG | 0.479925 | 7_4:+54101586 | None:intergenic |
| ATAATTACCACGTCCATACA+TGG | 0.482884 | 7_4:+54107279 | None:intergenic |
| TGAGATGAAGGTGGTGGTAG+TGG | 0.484354 | 7_4:+54107313 | None:intergenic |
| TTGAAGAAGTACCAGCGGTC+TGG | 0.485006 | 7_4:-54101480 | Msa1163040:CDS |
| CGAGAGACAATTGGAACCTC+TGG | 0.486624 | 7_4:+54101595 | None:intergenic |
| ACCACCAGTCGTTCCTCCAT+TGG | 0.488135 | 7_4:+54107115 | None:intergenic |
| TCTTTCTTTGATTGACAAGC+CGG | 0.490146 | 7_4:-54107149 | Msa1163040:CDS |
| TCAATTGGAGCAGAATCAAT+CGG | 0.499372 | 7_4:+54101499 | None:intergenic |
| GCCGGCTGATCTTGCTCCAA+TGG | 0.502269 | 7_4:-54107131 | Msa1163040:CDS |
| TCCATTGGAGCAAGATCAGC+CGG | 0.503676 | 7_4:+54107130 | None:intergenic |
| ACCATGTTGTTTCCTATGCA+TGG | 0.506943 | 7_4:-54101661 | Msa1163040:CDS |
| TCTGGTATAGGCCTCATGTA+TGG | 0.510085 | 7_4:+54107241 | None:intergenic |
| TTTCCATCCTGCCAGACCGC+TGG | 0.517374 | 7_4:+54101469 | None:intergenic |
| AACCTCTGGTATAGGCCTCA+TGG | 0.524083 | 7_4:+54101609 | None:intergenic |
| AGAAGTACCAGCGGTCTGGC+AGG | 0.529373 | 7_4:-54101476 | Msa1163040:CDS |
| GTTGGTATGAATGTTTGTGA+TGG | 0.529752 | 7_4:+54101754 | None:intergenic |
| CGACTGGTGGTGTTGAGTGA+TGG | 0.544769 | 7_4:-54107103 | Msa1163040:intron |
| AGATCTTCTTTGTACCACAT+TGG | 0.545928 | 7_4:-54101712 | Msa1163040:CDS |
| AACAACATGGTGTGTGATGA+AGG | 0.556950 | 7_4:+54101673 | None:intergenic |
| GTACCAGCGGTCTGGCAGGA+TGG | 0.558642 | 7_4:-54101472 | Msa1163040:CDS |
| TGAATCTTTAGGAGGAGCAA+TGG | 0.567363 | 7_4:-54107176 | Msa1163040:intron |
| TGGTTGCATCGAAATTCGAT+TGG | 0.568245 | 7_4:+54101877 | None:intergenic |
| TGGATCTTTGGGGAGAACAA+TGG | 0.571321 | 7_4:-54101545 | Msa1163040:CDS |
| TTGTTTCCTATGCATGGAAG+TGG | 0.582090 | 7_4:-54101655 | Msa1163040:CDS |
| TAGGCCTCATGGATGGATGA+AGG | 0.586352 | 7_4:+54101620 | None:intergenic |
| GGAAACATAGTGTGAGATGA+AGG | 0.586864 | 7_4:+54107301 | None:intergenic |
| TAATTACCACTTCCATGCAT+AGG | 0.590506 | 7_4:+54101649 | None:intergenic |
| AAAACTCTTTGTGAAAATTG+TGG | 0.591357 | 7_4:+54107355 | None:intergenic |
| GTTAGAGTAAGAACAAGAGT+AGG | 0.594186 | 7_4:+54101901 | None:intergenic |
| GATGAAGGTGGTGGAGATGG+TGG | 0.599841 | 7_4:+54101688 | None:intergenic |
| TCTGGTATAGGCCTCATGGA+TGG | 0.600026 | 7_4:+54101613 | None:intergenic |
| GATGAAGGTGGTGGTAGTGG+TGG | 0.600039 | 7_4:+54107316 | None:intergenic |
| GGTGGTATGAATGTTGTCAA+TGG | 0.600830 | 7_4:+54107385 | None:intergenic |
| GGCTGATCTTGCTCCAATGG+AGG | 0.602414 | 7_4:-54107128 | Msa1163040:CDS |
| GAAAATTGTGGTGTTGCTGG+TGG | 0.610901 | 7_4:+54107367 | None:intergenic |
| TCATGTATGGACGAAAGCGA+CGG | 0.619121 | 7_4:+54107254 | None:intergenic |
| GTGGAGATGGTGGTCCAATG+TGG | 0.620516 | 7_4:+54101698 | None:intergenic |
| GTCGCTTTCGTCCATACATG+AGG | 0.623718 | 7_4:-54107252 | Msa1163040:CDS |
| ATCCATGAGGCCTATACCAG+AGG | 0.624967 | 7_4:-54101611 | Msa1163040:CDS |
| ATGTTTCCCATGTATGGACG+TGG | 0.637434 | 7_4:-54107286 | Msa1163040:CDS |
| TAATTACCACGTCCATACAT+GGG | 0.646341 | 7_4:+54107280 | None:intergenic |
| ATAGTGTGAGATGAAGGTGG+TGG | 0.665632 | 7_4:+54107307 | None:intergenic |
| TCCAATGGAGGAACGACTGG+TGG | 0.666252 | 7_4:-54107116 | Msa1163040:CDS |
| TCCAATTGAAGAAGTACCAG+CGG | 0.672889 | 7_4:-54101485 | Msa1163040:CDS |
| ATAATATTGATGGATCTTTG+GGG | 0.673989 | 7_4:-54101555 | Msa1163040:CDS |
| GTGGTAGTGGTGGTCCATTG+CGG | 0.679358 | 7_4:+54107326 | None:intergenic |
| ATGGTGTGTGATGAAGGTGG+TGG | 0.684137 | 7_4:+54101679 | None:intergenic |
| AACATAGTGTGAGATGAAGG+TGG | 0.688373 | 7_4:+54107304 | None:intergenic |
| GCCTCATGGATGGATGAAGG+TGG | 0.701559 | 7_4:+54101623 | None:intergenic |
| TGTTATGGTAAAGACGAGCA+GGG | 0.703274 | 7_4:+54107206 | None:intergenic |
| ACCACCTTCATCCATCCATG+AGG | 0.719012 | 7_4:-54101624 | Msa1163040:CDS |
| TCCATGCATAGGAAACAACA+TGG | 0.729158 | 7_4:+54101660 | None:intergenic |
| AACATGGTGTGTGATGAAGG+TGG | 0.787924 | 7_4:+54101676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+CGG | + | chr7_4:54103566-54103585 | None:intergenic | 0.0% |
| !!! | TTTTTTGCTAATAAAATAAA+AGG | - | chr7_4:54102427-54102446 | Msa1163040:intron | 10.0% |
| !!! | ATTATATTTCATTTTTTTGA+AGG | - | chr7_4:54102921-54102940 | Msa1163040:intron | 10.0% |
| !!! | TTATATTTCATTTTTTTGAA+GGG | - | chr7_4:54102922-54102941 | Msa1163040:intron | 10.0% |
| !! | TTAATTAGAATATAAACAAA+AGG | - | chr7_4:54103196-54103215 | Msa1163040:intron | 10.0% |
| !! | TAATTAGAATATAAACAAAA+GGG | - | chr7_4:54103197-54103216 | Msa1163040:intron | 10.0% |
| !! | AACCATATATATATATATAT+GGG | - | chr7_4:54103293-54103312 | Msa1163040:intron | 10.0% |
| !! | ATATATATATATATATATCG+GGG | + | chr7_4:54103564-54103583 | None:intergenic | 10.0% |
| !!! | ATATATACTAACTTTTTTTA+AGG | - | chr7_4:54103626-54103645 | Msa1163040:intron | 10.0% |
| !!! | ATAAAGAAAATACATATTTT+TGG | - | chr7_4:54105167-54105186 | Msa1163040:intron | 10.0% |
| !!! | TAAAGAAAATACATATTTTT+GGG | - | chr7_4:54105168-54105187 | Msa1163040:intron | 10.0% |
| !!! | TAAAATTAACTATTTTTTAG+GGG | + | chr7_4:54105632-54105651 | None:intergenic | 10.0% |
| !!! | CTAAAATTAACTATTTTTTA+GGG | + | chr7_4:54105633-54105652 | None:intergenic | 10.0% |
| !!! | ACTAAAATTAACTATTTTTT+AGG | + | chr7_4:54105634-54105653 | None:intergenic | 10.0% |
| !! | TATCAAAATACAAATTTAAA+AGG | - | chr7_4:54106459-54106478 | Msa1163040:intron | 10.0% |
| !! | ATATATATAGGAATTAATTA+GGG | + | chr7_4:54106682-54106701 | None:intergenic | 10.0% |
| !! | TATATATATAGGAATTAATT+AGG | + | chr7_4:54106683-54106702 | None:intergenic | 10.0% |
| !!! | TTCCTATATATATATTTTTT+TGG | - | chr7_4:54106689-54106708 | Msa1163040:intron | 10.0% |
| !! | AACCAAAAAAATATATATAT+AGG | + | chr7_4:54106694-54106713 | None:intergenic | 10.0% |
| !!! | ATGGTTTTATAATTATGTAA+TGG | - | chr7_4:54101854-54101873 | Msa1163040:CDS | 15.0% |
| !!! | TGGTTTTATAATTATGTAAT+GGG | - | chr7_4:54101855-54101874 | Msa1163040:CDS | 15.0% |
| !!! | TTTTTGTTTTGATTTTCATT+AGG | - | chr7_4:54101915-54101934 | Msa1163040:CDS | 15.0% |
| !!! | TTTTGTTTTGATTTTCATTA+GGG | - | chr7_4:54101916-54101935 | Msa1163040:CDS | 15.0% |
| !!! | ATTAATGAAATGTTTTATTC+TGG | - | chr7_4:54102079-54102098 | Msa1163040:intron | 15.0% |
| !!! | TTAATGAAATGTTTTATTCT+GGG | - | chr7_4:54102080-54102099 | Msa1163040:intron | 15.0% |
| !!! | TTTTTTTTTCTTCTTTTTCA+AGG | - | chr7_4:54102316-54102335 | Msa1163040:intron | 15.0% |
| !!! | TTTTTTTTCTTCTTTTTCAA+GGG | - | chr7_4:54102317-54102336 | Msa1163040:intron | 15.0% |
| !!! | TCATAAAAACTTATTTGTTT+TGG | + | chr7_4:54102499-54102518 | None:intergenic | 15.0% |
| !! | TAGACAAAATTAATATTTGA+AGG | - | chr7_4:54102567-54102586 | Msa1163040:intron | 15.0% |
| !!! | ATTTTGCTTATAATAGTAAT+CGG | + | chr7_4:54102654-54102673 | None:intergenic | 15.0% |
| !!! | TATATGACTTGTTTATTTTA+CGG | - | chr7_4:54102805-54102824 | Msa1163040:intron | 15.0% |
| !! | CATTTCTATAAGTATTATTA+AGG | - | chr7_4:54103010-54103029 | Msa1163040:intron | 15.0% |
| !!! | AATTTTAAGGAAACAATATT+TGG | + | chr7_4:54103080-54103099 | None:intergenic | 15.0% |
| !!! | GTAATAAAGACAAAATTTTA+AGG | + | chr7_4:54103093-54103112 | None:intergenic | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGT+GGG | - | chr7_4:54103220-54103239 | Msa1163040:intron | 15.0% |
| !! | CAACCATATATATATATATA+TGG | - | chr7_4:54103292-54103311 | Msa1163040:intron | 15.0% |
| !! | ACCATATATATATATATATG+GGG | - | chr7_4:54103294-54103313 | Msa1163040:intron | 15.0% |
| !! | AAAGTTTAATATAGACAAAA+GGG | + | chr7_4:54103395-54103414 | None:intergenic | 15.0% |
| !! | TAAAGTTTAATATAGACAAA+AGG | + | chr7_4:54103396-54103415 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr7_4:54103458-54103477 | Msa1163040:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr7_4:54103459-54103478 | Msa1163040:intron | 15.0% |
| !! | TATATATATATATATATCGG+GGG | + | chr7_4:54103563-54103582 | None:intergenic | 15.0% |
| !! | TTTATTATAAATTCCATGAT+TGG | - | chr7_4:54103693-54103712 | Msa1163040:intron | 15.0% |
| !!! | TTTTTTTGAAGAAATCAAAA+TGG | + | chr7_4:54103864-54103883 | None:intergenic | 15.0% |
| !! | TATATATATATATGCAAAGA+AGG | - | chr7_4:54104480-54104499 | Msa1163040:intron | 15.0% |
| !! | TATATATAATTCAATTCGTT+TGG | + | chr7_4:54104657-54104676 | None:intergenic | 15.0% |
| !! | AAAAAAATACAAAAAATGAC+CGG | + | chr7_4:54104899-54104918 | None:intergenic | 15.0% |
| !!! | TGAATTTAATTTAGTTGATA+GGG | + | chr7_4:54105011-54105030 | None:intergenic | 15.0% |
| !!! | AAAGAAAATACATATTTTTG+GGG | - | chr7_4:54105169-54105188 | Msa1163040:intron | 15.0% |
| !! | TATTATATTTGATGTATTGT+TGG | - | chr7_4:54105276-54105295 | Msa1163040:intron | 15.0% |
| !! | TTGAAAAAGATAAATATAGA+TGG | - | chr7_4:54105304-54105323 | Msa1163040:intron | 15.0% |
| !!! | TGGATTTTGATTAAAATTAT+AGG | + | chr7_4:54105359-54105378 | None:intergenic | 15.0% |
| !! | AAATATACTAGGAATTAATT+AGG | + | chr7_4:54105750-54105769 | None:intergenic | 15.0% |
| !!! | TTAATTCCTAGTATATTTTT+TGG | - | chr7_4:54105752-54105771 | Msa1163040:intron | 15.0% |
| !! | TTTAAACCAAAAAATATACT+AGG | + | chr7_4:54105761-54105780 | None:intergenic | 15.0% |
| !! | ATTGTAAAATTAGAAGAAAA+AGG | + | chr7_4:54105925-54105944 | None:intergenic | 15.0% |
| !!! | AATTGATTCAATTACAATTT+TGG | - | chr7_4:54106013-54106032 | Msa1163040:intron | 15.0% |
| !! | AAAAAAAATTTCATTGCTTT+GGG | + | chr7_4:54106142-54106161 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTTCATTGCTT+TGG | + | chr7_4:54106143-54106162 | None:intergenic | 15.0% |
| !!! | AAAAACTTGTTCAAAAAATT+TGG | - | chr7_4:54106365-54106384 | Msa1163040:intron | 15.0% |
| !! | TATATATAGGAATTAATTAG+GGG | + | chr7_4:54106681-54106700 | None:intergenic | 15.0% |
| !!! | GGTTTTATAATTATGTAATG+GGG | - | chr7_4:54101856-54101875 | Msa1163040:CDS | 20.0% |
| !! | CTAAATTAAACTCATTTAAG+AGG | + | chr7_4:54102174-54102193 | None:intergenic | 20.0% |
| !! | TTTCTTTGGCTAAATTAAAT+TGG | + | chr7_4:54102197-54102216 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCTTTTTCAAG+GGG | - | chr7_4:54102318-54102337 | Msa1163040:intron | 20.0% |
| !!! | TTAAGATGATACTTTTGATA+AGG | + | chr7_4:54102595-54102614 | None:intergenic | 20.0% |
| !!! | ATGAGTGTAAATAATTTTGT+AGG | + | chr7_4:54102993-54103012 | None:intergenic | 20.0% |
| !!! | TATGTCATTGTCTTTTTTTA+AGG | - | chr7_4:54103130-54103149 | Msa1163040:intron | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+TGG | - | chr7_4:54103219-54103238 | Msa1163040:intron | 20.0% |
| !! | GTAATTATTGTTTATTTCAC+TGG | - | chr7_4:54103795-54103814 | Msa1163040:intron | 20.0% |
| !! | TGCAAAAATATATTGCTTAA+AGG | - | chr7_4:54104381-54104400 | Msa1163040:intron | 20.0% |
| !!! | TCTTTTTAAAGAGAATAAGT+GGG | - | chr7_4:54104947-54104966 | Msa1163040:intron | 20.0% |
| !!! | GTGAATTTAATTTAGTTGAT+AGG | + | chr7_4:54105012-54105031 | None:intergenic | 20.0% |
| !!! | ATGTATTTTCTTTATATACG+TGG | + | chr7_4:54105162-54105181 | None:intergenic | 20.0% |
| !! | TAGATGGTTACAATATAAAA+TGG | - | chr7_4:54105320-54105339 | Msa1163040:intron | 20.0% |
| !!! | TTTGGTTTAAAACAAAACAA+AGG | - | chr7_4:54105770-54105789 | Msa1163040:intron | 20.0% |
| !!! | TTGGTTTAAAACAAAACAAA+GGG | - | chr7_4:54105771-54105790 | Msa1163040:intron | 20.0% |
| !! | AAAAAAATTTCATTGCTTTG+GGG | + | chr7_4:54106141-54106160 | None:intergenic | 20.0% |
| !! | TTCTATTCAAAATCAAATCT+AGG | + | chr7_4:54106190-54106209 | None:intergenic | 20.0% |
| !! | AATAGAAAATACCAATTTGT+AGG | - | chr7_4:54106203-54106222 | Msa1163040:intron | 20.0% |
| !! | ATGTAAGATGTATTTATAGA+GGG | + | chr7_4:54106768-54106787 | None:intergenic | 20.0% |
| !! | TTTCAGTGATAAGAAAAAAA+TGG | + | chr7_4:54106857-54106876 | None:intergenic | 20.0% |
| !! | CATGATTACAATAATATTGA+TGG | - | chr7_4:54107285-54107304 | Msa1163040:CDS | 20.0% |
| !!! | AATAATATTGATGGATCTTT+GGG | - | chr7_4:54107294-54107313 | Msa1163040:CDS | 20.0% |
| ! | AAAACTCTTTGTGAAAATTG+TGG | + | chr7_4:54101498-54101517 | None:intergenic | 25.0% |
| ! | AAGATTCATCAATGTTGTTA+TGG | + | chr7_4:54101662-54101681 | None:intergenic | 25.0% |
| ! | AACAACATTGATGAATCTTT+AGG | - | chr7_4:54101663-54101682 | Msa1163040:CDS | 25.0% |
| !! | GATATGCTTGTTAATTTCTT+TGG | + | chr7_4:54102211-54102230 | None:intergenic | 25.0% |
| ! | AAATTAACAAGCATATCATG+TGG | - | chr7_4:54102214-54102233 | Msa1163040:intron | 25.0% |
| ! | AAATGAATACATCAATGTGT+GGG | - | chr7_4:54102283-54102302 | Msa1163040:intron | 25.0% |
| ! | AACATGCGTTGTTATATATA+GGG | + | chr7_4:54102377-54102396 | None:intergenic | 25.0% |
| !!! | AACTTATTTGTTTTGGTCTT+TGG | + | chr7_4:54102492-54102511 | None:intergenic | 25.0% |
| ! | TTGATGGAAAATGATGTAAT+TGG | - | chr7_4:54102835-54102854 | Msa1163040:intron | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | + | chr7_4:54103065-54103084 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | + | chr7_4:54103066-54103085 | None:intergenic | 25.0% |
| ! | AAAAGACAATGACATACTTA+AGG | + | chr7_4:54103126-54103145 | None:intergenic | 25.0% |
| ! | GCCCCATATATATATATATA+TGG | + | chr7_4:54103298-54103317 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr7_4:54103372-54103391 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr7_4:54103482-54103501 | Msa1163040:intron | 25.0% |
| ! | GTTTGATTATATGTATGTGT+GGG | + | chr7_4:54104618-54104637 | None:intergenic | 25.0% |
| ! | AGTTTGATTATATGTATGTG+TGG | + | chr7_4:54104619-54104638 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAGTAGTCTAT+TGG | - | chr7_4:54104914-54104933 | Msa1163040:intron | 25.0% |
| !!! | CTCTTTTTAAAGAGAATAAG+TGG | - | chr7_4:54104946-54104965 | Msa1163040:intron | 25.0% |
| !!! | CTTTTTAAAGAGAATAAGTG+GGG | - | chr7_4:54104948-54104967 | Msa1163040:intron | 25.0% |
| ! | TTCGTGAAAATTAATATGGT+TGG | + | chr7_4:54105070-54105089 | None:intergenic | 25.0% |
| ! | AAGGTTCGTGAAAATTAATA+TGG | + | chr7_4:54105074-54105093 | None:intergenic | 25.0% |
| ! | TAATAAAAATAGCCAACAGA+CGG | - | chr7_4:54105442-54105461 | Msa1163040:intron | 25.0% |
| ! | AAAAAAATGACCAATCATGA+TGG | + | chr7_4:54105895-54105914 | None:intergenic | 25.0% |
| !!! | ATTTTATTTCACTCGTGAAA+AGG | - | chr7_4:54106043-54106062 | Msa1163040:intron | 25.0% |
| !!! | TTTAGTTTTCAAAAGGTTAC+GGG | + | chr7_4:54106069-54106088 | None:intergenic | 25.0% |
| !!! | GTTTAGTTTTCAAAAGGTTA+CGG | + | chr7_4:54106070-54106089 | None:intergenic | 25.0% |
| !!! | CGAAAAGTTTAGTTTTCAAA+AGG | + | chr7_4:54106076-54106095 | None:intergenic | 25.0% |
| ! | AAAAAATTTCATTGCTTTGG+GGG | + | chr7_4:54106140-54106159 | None:intergenic | 25.0% |
| ! | TTCCTAAAAACTAGTCATTT+AGG | - | chr7_4:54106162-54106181 | Msa1163040:intron | 25.0% |
| ! | TCCTAAAAACTAGTCATTTA+GGG | - | chr7_4:54106163-54106182 | Msa1163040:intron | 25.0% |
| ! | TTTATTTGATAAGTCATGCT+TGG | + | chr7_4:54106324-54106343 | None:intergenic | 25.0% |
| ! | TGTAAGATGTATTTATAGAG+GGG | + | chr7_4:54106767-54106786 | None:intergenic | 25.0% |
| ! | GATGTAAGATGTATTTATAG+AGG | + | chr7_4:54106769-54106788 | None:intergenic | 25.0% |
| ! | AAATACATCTTACATCTCAA+AGG | - | chr7_4:54106773-54106792 | Msa1163040:intron | 25.0% |
| ! | ACACAATTTGCAACATAAAT+CGG | - | chr7_4:54107049-54107068 | Msa1163040:intron | 25.0% |
| !! | CAATAATATTGATGGATCTT+TGG | - | chr7_4:54107293-54107312 | Msa1163040:CDS | 25.0% |
| !! | ATAATATTGATGGATCTTTG+GGG | - | chr7_4:54107295-54107314 | Msa1163040:CDS | 25.0% |
| !!! | ATGGTGTGTTGTTTTCATTT+TGG | + | chr7_4:54101449-54101468 | None:intergenic | 30.0% |
| AAAATTGGAATCTCTGGTAT+AGG | + | chr7_4:54101624-54101643 | None:intergenic | 30.0% | |
| AACATTGATGAATCTTTAGG+AGG | - | chr7_4:54101666-54101685 | Msa1163040:CDS | 30.0% | |
| !! | AGTGATGGTTTGTTTGAAAT+GGG | - | chr7_4:54101762-54101781 | Msa1163040:CDS | 30.0% |
| !! | TTGTTTTACAGAGACATTGT+TGG | - | chr7_4:54101948-54101967 | Msa1163040:CDS | 30.0% |
| GTTGGACTTAATTATTGTCA+AGG | - | chr7_4:54101966-54101985 | Msa1163040:CDS | 30.0% | |
| CAAAACTAATCAAAAGACAG+AGG | + | chr7_4:54102017-54102036 | None:intergenic | 30.0% | |
| ! | AAACTGAGGTTTTCAATGAA+AGG | - | chr7_4:54102245-54102264 | Msa1163040:intron | 30.0% |
| ! | AACTGAGGTTTTCAATGAAA+GGG | - | chr7_4:54102246-54102265 | Msa1163040:intron | 30.0% |
| CAATGAAAGGGAAAACAAAT+TGG | - | chr7_4:54102258-54102277 | Msa1163040:intron | 30.0% | |
| CAAATGAATACATCAATGTG+TGG | - | chr7_4:54102282-54102301 | Msa1163040:intron | 30.0% | |
| ACATGCGTTGTTATATATAG+GGG | + | chr7_4:54102376-54102395 | None:intergenic | 30.0% | |
| GAACATGCGTTGTTATATAT+AGG | + | chr7_4:54102378-54102397 | None:intergenic | 30.0% | |
| !!! | ATCGGATGGAGTATTTTTTA+TGG | + | chr7_4:54102636-54102655 | None:intergenic | 30.0% |
| TGCTTATAATAGTAATCGGA+TGG | + | chr7_4:54102650-54102669 | None:intergenic | 30.0% | |
| ! | AATTTTGCTTGTAACAGTGA+CGG | - | chr7_4:54102762-54102781 | Msa1163040:intron | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr7_4:54103467-54103486 | Msa1163040:intron | 30.0% |
| CATTACCCAAACAATGAAAA+GGG | + | chr7_4:54103727-54103746 | None:intergenic | 30.0% | |
| ACCACATAAAAGCAATCTAA+CGG | + | chr7_4:54104086-54104105 | None:intergenic | 30.0% | |
| !! | ATTGCTTTTATGTGGTAGAT+AGG | - | chr7_4:54104090-54104109 | Msa1163040:intron | 30.0% |
| AAGCTTAAGTTCAACTCATT+TGG | - | chr7_4:54104715-54104734 | Msa1163040:intron | 30.0% | |
| TGTACATAGTTTCATGTAGT+AGG | + | chr7_4:54104771-54104790 | None:intergenic | 30.0% | |
| AAAAATGGTGAGATATGGTT+GGG | + | chr7_4:54104821-54104840 | None:intergenic | 30.0% | |
| AAAAAATGGTGAGATATGGT+TGG | + | chr7_4:54104822-54104841 | None:intergenic | 30.0% | |
| !!! | ACCATATCTCACCATTTTTT+AGG | - | chr7_4:54104822-54104841 | Msa1163040:intron | 30.0% |
| !!! | CCATATCTCACCATTTTTTA+GGG | - | chr7_4:54104823-54104842 | Msa1163040:intron | 30.0% |
| !!! | CATATCTCACCATTTTTTAG+GGG | - | chr7_4:54104824-54104843 | Msa1163040:intron | 30.0% |
| ! | ATTTGTCCCTTTGTTATGTA+AGG | - | chr7_4:54104859-54104878 | Msa1163040:intron | 30.0% |
| ! | TTTGTCCCTTTGTTATGTAA+GGG | - | chr7_4:54104860-54104879 | Msa1163040:intron | 30.0% |
| TTATGTAAGGGACTTCTATA+TGG | - | chr7_4:54104872-54104891 | Msa1163040:intron | 30.0% | |
| CATAATATATACAGGAGTTG+AGG | + | chr7_4:54104982-54105001 | None:intergenic | 30.0% | |
| GGACATTGCATAATATATAC+AGG | + | chr7_4:54104990-54105009 | None:intergenic | 30.0% | |
| TTAGTGCAAAATGGAAGAAA+AGG | + | chr7_4:54105093-54105112 | None:intergenic | 30.0% | |
| GAAGAAAGTTTAGTGCAAAA+TGG | + | chr7_4:54105102-54105121 | None:intergenic | 30.0% | |
| !!! | GAAAATACATATTTTTGGGG+TGG | - | chr7_4:54105172-54105191 | Msa1163040:intron | 30.0% |
| AATAAAAATAGCCAACAGAC+GGG | - | chr7_4:54105443-54105462 | Msa1163040:intron | 30.0% | |
| CATAATTGTAAGATAACCGA+GGG | + | chr7_4:54106101-54106120 | None:intergenic | 30.0% | |
| ! | AAAAATTTCATTGCTTTGGG+GGG | + | chr7_4:54106139-54106158 | None:intergenic | 30.0% |
| !!! | ACCCTAAATGACTAGTTTTT+AGG | + | chr7_4:54106167-54106186 | None:intergenic | 30.0% |
| ! | TAAAGTTGACAGCGAATTTT+AGG | + | chr7_4:54106229-54106248 | None:intergenic | 30.0% |
| TGAATGCATGTACATGTAAT+GGG | + | chr7_4:54106619-54106638 | None:intergenic | 30.0% | |
| TTGAATGCATGTACATGTAA+TGG | + | chr7_4:54106620-54106639 | None:intergenic | 30.0% | |
| TAAGATGTATTTATAGAGGG+GGG | + | chr7_4:54106765-54106784 | None:intergenic | 30.0% | |
| GTAAGATGTATTTATAGAGG+GGG | + | chr7_4:54106766-54106785 | None:intergenic | 30.0% | |
| CACAATTTGCAACATAAATC+GGG | - | chr7_4:54107050-54107069 | Msa1163040:intron | 30.0% | |
| TGTAAATCTTGTGATGTTGT+TGG | + | chr7_4:54107117-54107136 | None:intergenic | 30.0% | |
| TAATTACCACGTCCATACAT+GGG | + | chr7_4:54101573-54101592 | None:intergenic | 35.0% | |
| ATAATTACCACGTCCATACA+TGG | + | chr7_4:54101574-54101593 | None:intergenic | 35.0% | |
| TCTTTCTTTGATTGACAAGC+CGG | - | chr7_4:54101701-54101720 | Msa1163040:CDS | 35.0% | |
| !! | GAGTGATGGTTTGTTTGAAA+TGG | - | chr7_4:54101761-54101780 | Msa1163040:CDS | 35.0% |
| ! | CTACCATGATTTGAAACTCT+AGG | - | chr7_4:54101824-54101843 | Msa1163040:CDS | 35.0% |
| CAACCTAGAGTTTCAAATCA+TGG | + | chr7_4:54101830-54101849 | None:intergenic | 35.0% | |
| !! | TGAAACTCTAGGTTGATCTA+TGG | - | chr7_4:54101835-54101854 | Msa1163040:CDS | 35.0% |
| TGTCAAGGCATGTTTGATAT+CGG | - | chr7_4:54101981-54102000 | Msa1163040:intron | 35.0% | |
| TGTTCTTGTCAACTGAACTA+CGG | - | chr7_4:54102393-54102412 | Msa1163040:intron | 35.0% | |
| ATGCTTAACCAATATCCATG+GGG | + | chr7_4:54102469-54102488 | None:intergenic | 35.0% | |
| GATGCTTAACCAATATCCAT+GGG | + | chr7_4:54102470-54102489 | None:intergenic | 35.0% | |
| ! | ATTTTGCTTGTAACAGTGAC+GGG | - | chr7_4:54102763-54102782 | Msa1163040:intron | 35.0% |
| ! | ATTTTACGGCAGTTTCTTGA+TGG | - | chr7_4:54102819-54102838 | Msa1163040:intron | 35.0% |
| AAGTGGGTGTAAATTAGTGA+AGG | + | chr7_4:54103049-54103068 | None:intergenic | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr7_4:54103255-54103274 | Msa1163040:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr7_4:54103255-54103274 | None:intergenic | 35.0% |
| ! | ACTTGCGCCTTAGTATTTTT+AGG | - | chr7_4:54103517-54103536 | Msa1163040:intron | 35.0% |
| ! | CAGAACCCTTTTCATTGTTT+GGG | - | chr7_4:54103719-54103738 | Msa1163040:intron | 35.0% |
| CCATTACCCAAACAATGAAA+AGG | + | chr7_4:54103728-54103747 | None:intergenic | 35.0% | |
| ! | CCTTTTCATTGTTTGGGTAA+TGG | - | chr7_4:54103725-54103744 | Msa1163040:intron | 35.0% |
| ACGTTAACACAATTACTACG+TGG | + | chr7_4:54103974-54103993 | None:intergenic | 35.0% | |
| !! | ACCGTTAGATTGCTTTTATG+TGG | - | chr7_4:54104082-54104101 | Msa1163040:intron | 35.0% |
| TTCAGTTCACAATTCTACTC+AGG | - | chr7_4:54104160-54104179 | Msa1163040:intron | 35.0% | |
| CTATGTACACTAGTTACATC+AGG | - | chr7_4:54104782-54104801 | Msa1163040:intron | 35.0% | |
| CTAGTTACATCAGGAAATTC+TGG | - | chr7_4:54104791-54104810 | Msa1163040:intron | 35.0% | |
| CCCTAAAAAATGGTGAGATA+TGG | + | chr7_4:54104826-54104845 | None:intergenic | 35.0% | |
| TGAGATATGCCCCTAAAAAA+TGG | + | chr7_4:54104836-54104855 | None:intergenic | 35.0% | |
| GAAGTCCCTTACATAACAAA+GGG | + | chr7_4:54104868-54104887 | None:intergenic | 35.0% | |
| AGAAGTCCCTTACATAACAA+AGG | + | chr7_4:54104869-54104888 | None:intergenic | 35.0% | |
| TCATGATGGTAAGATATGGT+TGG | + | chr7_4:54105881-54105900 | None:intergenic | 35.0% | |
| CCAATCATGATGGTAAGATA+TGG | + | chr7_4:54105885-54105904 | None:intergenic | 35.0% | |
| CCATATCTTACCATCATGAT+TGG | - | chr7_4:54105882-54105901 | Msa1163040:intron | 35.0% | |
| ! | AACTAAACTTTTCGATCCCT+CGG | - | chr7_4:54106082-54106101 | Msa1163040:intron | 35.0% |
| CCATAATTGTAAGATAACCG+AGG | + | chr7_4:54106102-54106121 | None:intergenic | 35.0% | |
| CCTCGGTTATCTTACAATTA+TGG | - | chr7_4:54106099-54106118 | Msa1163040:intron | 35.0% | |
| ! | CGAATTTTAGGCCTACAAAT+TGG | + | chr7_4:54106217-54106236 | None:intergenic | 35.0% |
| AAGATGTATTTATAGAGGGG+GGG | + | chr7_4:54106764-54106783 | None:intergenic | 35.0% | |
| GTTAGAGTAAGAACAAGAGT+AGG | + | chr7_4:54106952-54106971 | None:intergenic | 35.0% | |
| !!! | TTTTGAAGGTGTTATGGCAA+TGG | + | chr7_4:54106996-54107015 | None:intergenic | 35.0% |
| !! | AAGATCTTGTGCAGTTTTGA+AGG | + | chr7_4:54107010-54107029 | None:intergenic | 35.0% |
| AAACTGCACAAGATCTTTCT+TGG | - | chr7_4:54107013-54107032 | Msa1163040:intron | 35.0% | |
| TGCAAATTGTGTATGAGCTT+TGG | + | chr7_4:54107041-54107060 | None:intergenic | 35.0% | |
| GTTGGTATGAATGTTTGTGA+TGG | + | chr7_4:54107099-54107118 | None:intergenic | 35.0% | |
| AGATCTTCTTTGTACCACAT+TGG | - | chr7_4:54107138-54107157 | Msa1163040:CDS | 35.0% | |
| TAATTACCACTTCCATGCAT+AGG | + | chr7_4:54107204-54107223 | None:intergenic | 35.0% | |
| TCAATTGGAGCAGAATCAAT+CGG | + | chr7_4:54107354-54107373 | None:intergenic | 35.0% | |
| GGTGGTATGAATGTTGTCAA+TGG | + | chr7_4:54101468-54101487 | None:intergenic | 40.0% | |
| !! | TGTGAAAATTGTGGTGTTGC+TGG | + | chr7_4:54101489-54101508 | None:intergenic | 40.0% |
| AACATAGTGTGAGATGAAGG+TGG | + | chr7_4:54101549-54101568 | None:intergenic | 40.0% | |
| GGAAACATAGTGTGAGATGA+AGG | + | chr7_4:54101552-54101571 | None:intergenic | 40.0% | |
| CACACTATGTTTCCCATGTA+TGG | - | chr7_4:54101558-54101577 | Msa1163040:CDS | 40.0% | |
| TAAAGACGAGCAGGGAAAAT+TGG | + | chr7_4:54101639-54101658 | None:intergenic | 40.0% | |
| TGTTATGGTAAAGACGAGCA+GGG | + | chr7_4:54101647-54101666 | None:intergenic | 40.0% | |
| TTGTTATGGTAAAGACGAGC+AGG | + | chr7_4:54101648-54101667 | None:intergenic | 40.0% | |
| ! | TGAATCTTTAGGAGGAGCAA+TGG | - | chr7_4:54101674-54101693 | Msa1163040:CDS | 40.0% |
| !! | TTTGTTGTTGTTCCTGTTGC+TGG | + | chr7_4:54101793-54101812 | None:intergenic | 40.0% |
| ! | ATGTGGTCTTGATCAAACTG+AGG | - | chr7_4:54102231-54102250 | Msa1163040:intron | 40.0% |
| GTTCTTGTCAACTGAACTAC+GGG | - | chr7_4:54102394-54102413 | Msa1163040:intron | 40.0% | |
| TTCTTGTCAACTGAACTACG+GGG | - | chr7_4:54102395-54102414 | Msa1163040:intron | 40.0% | |
| GGATGCTTAACCAATATCCA+TGG | + | chr7_4:54102471-54102490 | None:intergenic | 40.0% | |
| ! | TTTTGCTTGTAACAGTGACG+GGG | - | chr7_4:54102764-54102783 | Msa1163040:intron | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr7_4:54103258-54103277 | Msa1163040:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr7_4:54103259-54103278 | Msa1163040:intron | 40.0% |
| ACACCCACCTAAAAACACTA+AGG | + | chr7_4:54103265-54103284 | None:intergenic | 40.0% | |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr7_4:54103259-54103278 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr7_4:54103258-54103277 | None:intergenic | 40.0% |
| !!! | TGCGCCTTAGTATTTTTAGG+TGG | - | chr7_4:54103520-54103539 | Msa1163040:intron | 40.0% |
| !!! | GCGCCTTAGTATTTTTAGGT+GGG | - | chr7_4:54103521-54103540 | Msa1163040:intron | 40.0% |
| GCACCCACCTAAAAATACTA+AGG | + | chr7_4:54103527-54103546 | None:intergenic | 40.0% | |
| CCAAACAATGAAAAGGGTTC+TGG | + | chr7_4:54103721-54103740 | None:intergenic | 40.0% | |
| ! | CCAGAACCCTTTTCATTGTT+TGG | - | chr7_4:54103718-54103737 | Msa1163040:intron | 40.0% |
| ! | GTGGAATCTAGCTCAATAGT+TGG | + | chr7_4:54103955-54103974 | None:intergenic | 40.0% |
| ! | TGAACCTAACGAGTTGAATC+AGG | + | chr7_4:54104242-54104261 | None:intergenic | 40.0% |
| TAAGGGACTTCTATATGGTC+CGG | - | chr7_4:54104877-54104896 | Msa1163040:intron | 40.0% | |
| ! | CTTTGGGGGGAAATATTGTT+GGG | + | chr7_4:54106126-54106145 | None:intergenic | 40.0% |
| ! | TTCAAGGTAGGGCATGATTT+TGG | + | chr7_4:54106740-54106759 | None:intergenic | 40.0% |
| TGCAAGAAGCTAGAGAAATG+TGG | + | chr7_4:54106823-54106842 | None:intergenic | 40.0% | |
| TGGTTGCATCGAAATTCGAT+TGG | + | chr7_4:54106976-54106995 | None:intergenic | 40.0% | |
| !!! | GTGCAGTTTTGAAGGTGTTA+TGG | + | chr7_4:54107002-54107021 | None:intergenic | 40.0% |
| AACAACATGGTGTGTGATGA+AGG | + | chr7_4:54107180-54107199 | None:intergenic | 40.0% | |
| !! | ACCATGTTGTTTCCTATGCA+TGG | - | chr7_4:54107189-54107208 | Msa1163040:intron | 40.0% |
| TCCATGCATAGGAAACAACA+TGG | + | chr7_4:54107193-54107212 | None:intergenic | 40.0% | |
| TTGTTTCCTATGCATGGAAG+TGG | - | chr7_4:54107195-54107214 | Msa1163040:intron | 40.0% | |
| ACAATTGGAACCTCTGGTAT+AGG | + | chr7_4:54107252-54107271 | None:intergenic | 40.0% | |
| !! | TCCAATTGAAGAAGTACCAG+CGG | - | chr7_4:54107365-54107384 | Msa1163040:CDS | 40.0% |
| !! | GAAAATTGTGGTGTTGCTGG+TGG | + | chr7_4:54101486-54101505 | None:intergenic | 45.0% |
| !!! | AGAGTTTTTTCACGCCGCAA+TGG | - | chr7_4:54101510-54101529 | Msa1163040:CDS | 45.0% |
| ATAGTGTGAGATGAAGGTGG+TGG | + | chr7_4:54101546-54101565 | None:intergenic | 45.0% | |
| ATGTTTCCCATGTATGGACG+TGG | - | chr7_4:54101564-54101583 | Msa1163040:CDS | 45.0% | |
| TCATGTATGGACGAAAGCGA+CGG | + | chr7_4:54101599-54101618 | None:intergenic | 45.0% | |
| TCTGGTATAGGCCTCATGTA+TGG | + | chr7_4:54101612-54101631 | None:intergenic | 45.0% | |
| GCAGGGAAAATTGGAATCTC+TGG | + | chr7_4:54101630-54101649 | None:intergenic | 45.0% | |
| GAATGTTAACAAGTGCCCCA+TGG | - | chr7_4:54102451-54102470 | Msa1163040:intron | 45.0% | |
| AACAAGTGCCCCATGGATAT+TGG | - | chr7_4:54102458-54102477 | Msa1163040:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr7_4:54103327-54103346 | Msa1163040:intron | 45.0% | |
| GGTAGATAGGACTAGAAACG+AGG | - | chr7_4:54104103-54104122 | Msa1163040:intron | 45.0% | |
| AAACTCGTCTGAGCTTGACT+TGG | - | chr7_4:54104137-54104156 | Msa1163040:intron | 45.0% | |
| GCAACCTGATTCAACTCGTT+AGG | - | chr7_4:54104235-54104254 | Msa1163040:intron | 45.0% | |
| GGTTTATGAACCAACCCAAG+TGG | - | chr7_4:54104736-54104755 | Msa1163040:intron | 45.0% | |
| GTAGGTGATCTTGACCACTT+GGG | + | chr7_4:54104753-54104772 | None:intergenic | 45.0% | |
| AGTAGGTGATCTTGACCACT+TGG | + | chr7_4:54104754-54104773 | None:intergenic | 45.0% | |
| AATGGTGAGATATGGTTGGG+TGG | + | chr7_4:54104818-54104837 | None:intergenic | 45.0% | |
| !! | GCTTTGGGGGGAAATATTGT+TGG | + | chr7_4:54106127-54106146 | None:intergenic | 45.0% |
| TTTATAGAGGGGGGGTTTCA+AGG | + | chr7_4:54106756-54106775 | None:intergenic | 45.0% | |
| AACATGGTGTGTGATGAAGG+TGG | + | chr7_4:54107177-54107196 | None:intergenic | 45.0% | |
| TGACGAGTACGAGAGACAAT+TGG | + | chr7_4:54107267-54107286 | None:intergenic | 45.0% | |
| ! | TGGATCTTTGGGGAGAACAA+TGG | - | chr7_4:54107305-54107324 | Msa1163040:CDS | 45.0% |
| ACCGCTGGTACTTCTTCAAT+TGG | + | chr7_4:54107369-54107388 | None:intergenic | 45.0% | |
| !!! | TATTCTAATTAATTTTAAAT+AGG | + | chr7_4:54103188-54103207 | None:intergenic | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | - | chr7_4:54103407-54103426 | Msa1163040:intron | 5.0% |
| !! | TATATATATATATATATATC+GGG | + | chr7_4:54103565-54103584 | None:intergenic | 5.0% |
| !!! | TTTTTAAAAGAAAAATTAAA+AGG | + | chr7_4:54104332-54104351 | None:intergenic | 5.0% |
| !!! | TTTTAATTTTTCTTTTAAAA+AGG | - | chr7_4:54104331-54104350 | Msa1163040:intron | 5.0% |
| !!! | TTGTTTTTATTAAAATTATT+TGG | + | chr7_4:54105379-54105398 | None:intergenic | 5.0% |
| !!! | AAATTTTATTAATTTTTTTG+AGG | - | chr7_4:54106263-54106282 | Msa1163040:intron | 5.0% |
| !! | ATAAAAAGAAAATTAAAATT+TGG | - | chr7_4:54106339-54106358 | Msa1163040:intron | 5.0% |
| !!! | TAATTAACATTATTTTATTT+TGG | - | chr7_4:54106511-54106530 | Msa1163040:intron | 5.0% |
| ! | TGAGATGAAGGTGGTGGTAG+TGG | + | chr7_4:54101540-54101559 | None:intergenic | 50.0% |
| ! | GTCGCTTTCGTCCATACATG+AGG | - | chr7_4:54101598-54101617 | Msa1163040:CDS | 50.0% |
| TCCATTGGAGCAAGATCAGC+CGG | + | chr7_4:54101723-54101742 | None:intergenic | 50.0% | |
| !! | AAATGGGAAGCACCAGCAAC+AGG | - | chr7_4:54101778-54101797 | Msa1163040:CDS | 50.0% |
| !! | AAGGGTTCTGGCTCCAATCA+TGG | + | chr7_4:54103709-54103728 | None:intergenic | 50.0% |
| AAGTCTATCCCACCAGCACA+AGG | + | chr7_4:54103825-54103844 | None:intergenic | 50.0% | |
| !! | GTGCTGGTGGGATAGACTTT+TGG | - | chr7_4:54103826-54103845 | Msa1163040:intron | 50.0% |
| GTGATCTTGACCACTTGGGT+TGG | + | chr7_4:54104749-54104768 | None:intergenic | 50.0% | |
| !! | TGTGATGAAGGTGGTGGAGA+TGG | + | chr7_4:54107168-54107187 | None:intergenic | 50.0% |
| ATGGTGTGTGATGAAGGTGG+TGG | + | chr7_4:54107174-54107193 | None:intergenic | 50.0% | |
| ACCACCTTCATCCATCCATG+AGG | - | chr7_4:54107226-54107245 | Msa1163040:CDS | 50.0% | |
| TAGGCCTCATGGATGGATGA+AGG | + | chr7_4:54107233-54107252 | None:intergenic | 50.0% | |
| TCTGGTATAGGCCTCATGGA+TGG | + | chr7_4:54107240-54107259 | None:intergenic | 50.0% | |
| ATCCATGAGGCCTATACCAG+AGG | - | chr7_4:54107239-54107258 | Msa1163040:CDS | 50.0% | |
| AACCTCTGGTATAGGCCTCA+TGG | + | chr7_4:54107244-54107263 | None:intergenic | 50.0% | |
| CGAGAGACAATTGGAACCTC+TGG | + | chr7_4:54107258-54107277 | None:intergenic | 50.0% | |
| !! | TTGAAGAAGTACCAGCGGTC+TGG | - | chr7_4:54107370-54107389 | Msa1163040:CDS | 50.0% |
| !! | GTGGTAGTGGTGGTCCATTG+CGG | + | chr7_4:54101527-54101546 | None:intergenic | 55.0% |
| !! | GATGAAGGTGGTGGTAGTGG+TGG | + | chr7_4:54101537-54101556 | None:intergenic | 55.0% |
| GGCTGATCTTGCTCCAATGG+AGG | - | chr7_4:54101722-54101741 | Msa1163040:CDS | 55.0% | |
| TGCTCCAATGGAGGAACGAC+TGG | - | chr7_4:54101731-54101750 | Msa1163040:CDS | 55.0% | |
| TCCAATGGAGGAACGACTGG+TGG | - | chr7_4:54101734-54101753 | Msa1163040:CDS | 55.0% | |
| ACCACCAGTCGTTCCTCCAT+TGG | + | chr7_4:54101738-54101757 | None:intergenic | 55.0% | |
| ! | CGACTGGTGGTGTTGAGTGA+TGG | - | chr7_4:54101747-54101766 | Msa1163040:CDS | 55.0% |
| TTCACTGGCACACCTTGTGC+TGG | - | chr7_4:54103810-54103829 | Msa1163040:intron | 55.0% | |
| AGAGGGGGGGTTTCAAGGTA+GGG | + | chr7_4:54106751-54106770 | None:intergenic | 55.0% | |
| TAGAGGGGGGGTTTCAAGGT+AGG | + | chr7_4:54106752-54106771 | None:intergenic | 55.0% | |
| ! | GTGGAGATGGTGGTCCAATG+TGG | + | chr7_4:54107155-54107174 | None:intergenic | 55.0% |
| !! | GATGAAGGTGGTGGAGATGG+TGG | + | chr7_4:54107165-54107184 | None:intergenic | 55.0% |
| GCCTCATGGATGGATGAAGG+TGG | + | chr7_4:54107230-54107249 | None:intergenic | 55.0% | |
| GCCGGCTGATCTTGCTCCAA+TGG | - | chr7_4:54101719-54101738 | Msa1163040:CDS | 60.0% | |
| ACTGGCACACCTTGTGCTGG+TGG | - | chr7_4:54103813-54103832 | Msa1163040:intron | 60.0% | |
| ! | CTGGCACACCTTGTGCTGGT+GGG | - | chr7_4:54103814-54103833 | Msa1163040:intron | 60.0% |
| ACCACTCTGTGCCCGTCTGT+TGG | + | chr7_4:54105457-54105476 | None:intergenic | 60.0% | |
| !! | AGAAGTACCAGCGGTCTGGC+AGG | - | chr7_4:54107374-54107393 | Msa1163040:CDS | 60.0% |
| TTTCCATCCTGCCAGACCGC+TGG | + | chr7_4:54107384-54107403 | None:intergenic | 60.0% | |
| TGTGCGCATCCACACACGCG+TGG | - | chr7_4:54104589-54104608 | Msa1163040:intron | 65.0% | |
| GTGCGCATCCACACACGCGT+GGG | - | chr7_4:54104590-54104609 | Msa1163040:intron | 65.0% | |
| GCCAACAGACGGGCACAGAG+TGG | - | chr7_4:54105453-54105472 | Msa1163040:intron | 65.0% | |
| GTACCAGCGGTCTGGCAGGA+TGG | - | chr7_4:54107378-54107397 | Msa1163040:CDS | 65.0% | |
| TGTGGGCACCCACGCGTGTG+TGG | + | chr7_4:54104601-54104620 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54101435 | 54107437 | 54101435 | ID=Msa1163040;Name=Msa1163040 |
| chr7_4 | mRNA | 54101435 | 54107437 | 54101435 | ID=Msa1163040-mRNA-1;Parent=Msa1163040;Name=Msa1163040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|3|0|283 |
| chr7_4 | exon | 54107221 | 54107437 | 54107221 | ID=Msa1163040-mRNA-1:exon:15714;Parent=Msa1163040-mRNA-1 |
| chr7_4 | exon | 54107104 | 54107187 | 54107104 | ID=Msa1163040-mRNA-1:exon:15713;Parent=Msa1163040-mRNA-1 |
| chr7_4 | exon | 54101435 | 54101985 | 54101435 | ID=Msa1163040-mRNA-1:exon:15712;Parent=Msa1163040-mRNA-1 |
| chr7_4 | CDS | 54107221 | 54107437 | 54107221 | ID=Msa1163040-mRNA-1:cds;Parent=Msa1163040-mRNA-1 |
| chr7_4 | CDS | 54107104 | 54107187 | 54107104 | ID=Msa1163040-mRNA-1:cds;Parent=Msa1163040-mRNA-1 |
| chr7_4 | CDS | 54101435 | 54101985 | 54101435 | ID=Msa1163040-mRNA-1:cds;Parent=Msa1163040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
