AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1164310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164310 MtrunA17_Chr7g0262311 92.000 275 21 1 1 275 1 274 0.0 523
Msa1164310 MtrunA17_Chr5g0395781 50.352 284 115 7 1 275 1 267 7.88e-84 257
Msa1164310 MtrunA17_Chr5g0395751 57.940 233 64 4 16 234 6 218 1.21e-69 219
Msa1164310 MtrunA17_Chr5g0395741 53.365 208 74 4 71 275 118 305 2.43e-54 182
Msa1164310 MtrunA17_Chr3g0097201 58.857 175 57 2 102 275 1 161 1.07e-52 173
Msa1164310 MtrunA17_Chr3g0097211 67.816 87 25 1 6 89 2 88 6.32e-30 113
Msa1164310 MtrunA17_Chr4g0033741 38.095 189 90 7 35 222 10 172 1.19e-23 96.7
Msa1164310 MtrunA17_Chr5g0444241 37.584 149 88 3 129 272 186 334 3.66e-23 99.4
Msa1164310 MtrunA17_Chr7g0262351 47.500 120 58 3 279 398 22 136 4.64e-23 94.0
Msa1164310 MtrunA17_Chr8g0364781 45.545 101 52 2 279 377 12 111 2.59e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164310 AT5G26594.1 39.167 120 69 2 279 398 18 133 5.74e-17 77.8
Msa1164310 AT3G04280.1 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1164310 AT3G04280.2 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1164310 AT3G04280.3 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1164310 AT3G24850.1 30.556 180 102 6 115 285 183 348 2.90e-13 70.9
Msa1164310 AT2G31720.1 32.099 162 104 3 156 314 137 295 7.03e-13 69.3
Msa1164310 AT1G05920.1 31.746 126 78 4 156 273 171 296 1.52e-11 65.5
Msa1164310 AT5G24050.1 25.610 246 158 6 35 271 100 329 3.45e-11 64.7

Find 82 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCAACATTTGGTCATTT+AGG 0.092697 7_4:-55944943 Msa1164310:CDS
TTTACAGTCTTATACAAAAT+TGG 0.190742 7_4:-55945006 Msa1164310:CDS
GTGGCATTAAAAGACGATTT+TGG 0.230260 7_4:+55945191 None:intergenic
AGTGGAGAATGACTGATAAA+TGG 0.236879 7_4:-55945030 Msa1164310:CDS
TCCACCTTCTTCGTGGTCTT+TGG 0.253725 7_4:+55945400 None:intergenic
ACTCAACATTTGGTCATTTA+GGG 0.255771 7_4:-55944942 Msa1164310:CDS
TCCACCTTCCTCGTGGTCTT+TGG 0.286800 7_4:+55945358 None:intergenic
ATCTTGTTCTTGACATTAAT+AGG 0.287639 7_4:+55945286 None:intergenic
ATTGTGAAGCTTCTAAAATA+AGG 0.305880 7_4:+55945064 None:intergenic
TTGACATTAATAGGTAATAT+TGG 0.338094 7_4:+55945295 None:intergenic
CCAAGTTCGTCTTCTTTAAG+TGG 0.388473 7_4:+55945172 None:intergenic
CGCATTGCCAAGCAAAGTTA+TGG 0.391834 7_4:+55945614 None:intergenic
GCCCGTCATGGATGGAATTA+CGG 0.406314 7_4:-55942109 Msa1164310:intron
CTGCATATTCATCATTAGTA+AGG 0.410681 7_4:+55941813 None:intergenic
GTGGAGAATGACTGATAAAT+GGG 0.417628 7_4:-55945029 Msa1164310:CDS
ACCTTCTCCATAACTTTGCT+TGG 0.420476 7_4:-55945621 Msa1164310:CDS
AGAGATATCTTGACATTACT+TGG 0.437895 7_4:-55942228 Msa1164310:CDS
CCACTTAAAGAAGACGAACT+TGG 0.439642 7_4:-55945172 Msa1164310:CDS
GAATACCCTGGCCAGATTGT+TGG 0.444431 7_4:-55941848 Msa1164310:CDS
TTGTGAAGCTTCTAAAATAA+GGG 0.449884 7_4:+55945065 None:intergenic
AACCGTGCCAATGAGGTCTA+AGG 0.458884 7_4:+55942170 None:intergenic
TATGCAGAATTTCGCAATGC+AGG 0.461823 7_4:-55941797 Msa1164310:CDS
AAACATGCTGTGAGGGGAAA+TGG 0.465819 7_4:-55944983 Msa1164310:CDS
ACAATCACTTCTAAACCAAC+CGG 0.487692 7_4:+55945094 None:intergenic
GACGTGAGACACCAACAATC+TGG 0.490889 7_4:+55941837 None:intergenic
GATGATCTACATCATGAAGA+TGG 0.493143 7_4:-55941770 Msa1164310:CDS
ATTTGGTTCCACCTTCTTCG+TGG 0.495745 7_4:+55945393 None:intergenic
CCCGCGTGGATTAAAAGTAC+TGG 0.511605 7_4:-55942286 Msa1164310:CDS
GAGACACCAACAATCTGGCC+AGG 0.513873 7_4:+55941842 None:intergenic
AAAGAAGCCTTAGACCTCAT+TGG 0.516268 7_4:-55942177 Msa1164310:CDS
TCACAATGTGCTTCAAGAAG+TGG 0.523622 7_4:-55945048 Msa1164310:CDS
AGGATCATGCCCGTCATGGA+TGG 0.527719 7_4:-55942117 Msa1164310:CDS
AAATTTCTGTTCCTTCGTCA+TGG 0.529500 7_4:+55945702 None:intergenic
TATCTTGACATTACTTGGTG+TGG 0.530817 7_4:-55942223 Msa1164310:CDS
AAATTGGAAACATGCTGTGA+GGG 0.531590 7_4:-55944990 Msa1164310:CDS
TTTCAACATATGATAGTGCA+AGG 0.532595 7_4:+55941742 None:intergenic
AAAAGGTCATGCTAGTTGAC+AGG 0.534345 7_4:+55941698 None:intergenic
AGGTGTCACCCATGTGATGA+AGG 0.535873 7_4:-55945454 Msa1164310:CDS
AAGTAGCGAATACCAAGAAA+AGG 0.536745 7_4:-55945474 Msa1164310:CDS
CATTTGGTCATTTAGGGTCA+AGG 0.537795 7_4:-55944936 Msa1164310:CDS
TTTGCGTCAGATATCGATGA+AGG 0.539968 7_4:-55945214 Msa1164310:CDS
GGAGAAGATCAAAGGATACA+TGG 0.546580 7_4:-55945668 Msa1164310:CDS
GGCTAGGATCATGCCCGTCA+TGG 0.548604 7_4:-55942121 Msa1164310:CDS
ACCGTAATTCCATCCATGAC+GGG 0.549235 7_4:+55942108 None:intergenic
ACAGAAATTTGCTATCACTA+AGG 0.550411 7_4:-55945689 Msa1164310:CDS
GAAACCAAAGACCACGAAGA+AGG 0.554191 7_4:-55945404 Msa1164310:CDS
TAATGTCAAGAACAAGATCA+AGG 0.554858 7_4:-55945281 Msa1164310:CDS
TGGATTAAAAGTACTGGTTG+TGG 0.556379 7_4:-55942280 Msa1164310:CDS
AACAAGATCAAGGAGTTGAA+TGG 0.557360 7_4:-55945271 Msa1164310:CDS
TCTTCTTCAGAATAAAATTG+TGG 0.559109 7_4:+55945574 None:intergenic
AAAGGAGACTTTAGATACAA+AGG 0.565224 7_4:-55945131 Msa1164310:CDS
GCCAAGCAAAGTTATGGAGA+AGG 0.574243 7_4:+55945620 None:intergenic
ATTCCACAAAACACAGTGGA+AGG 0.576751 7_4:-55945499 Msa1164310:CDS
ACCAAAGACCACGAGGAAGG+TGG 0.579088 7_4:-55945359 Msa1164310:CDS
ATGCAGAATTTCGCAATGCA+GGG 0.581025 7_4:-55941796 Msa1164310:CDS
TGATCCTAGCCATGAGAATG+AGG 0.586084 7_4:+55942133 None:intergenic
ATCACTAAGGAGAAGATCAA+AGG 0.586998 7_4:-55945676 Msa1164310:CDS
TAAATTCGACCTCATTCTCA+TGG 0.588335 7_4:-55942142 Msa1164310:CDS
TCGACCTCATTCTCATGGCT+AGG 0.592585 7_4:-55942137 Msa1164310:CDS
AACCGTAATTCCATCCATGA+CGG 0.593130 7_4:+55942107 None:intergenic
GACATGCTACCTTCATCACA+TGG 0.593230 7_4:+55945445 None:intergenic
TTAATAGGTAATATTGGCGG+AGG 0.598936 7_4:+55945301 None:intergenic
TACGTTCAACCGTGCCAATG+AGG 0.601575 7_4:+55942163 None:intergenic
GAAACCAAAGACCACGAGGA+AGG 0.602167 7_4:-55945362 Msa1164310:CDS
ACCAAAGACCACGAAGAAGG+TGG 0.606619 7_4:-55945401 Msa1164310:CDS
AGCCTTAGACCTCATTGGCA+CGG 0.608494 7_4:-55942172 Msa1164310:CDS
ACATTAATAGGTAATATTGG+CGG 0.614565 7_4:+55945298 None:intergenic
TGGTTTAGAAGTGATTGTGT+TGG 0.618872 7_4:-55945089 Msa1164310:CDS
AGATGATGATCTTGTTCGAA+TGG 0.623757 7_4:-55942256 Msa1164310:CDS
TTCAACATATGATAGTGCAA+GGG 0.630612 7_4:+55941743 None:intergenic
TTTCGGTTCCACCTTCCTCG+TGG 0.635344 7_4:+55945351 None:intergenic
AATTGGAAACATGCTGTGAG+GGG 0.651158 7_4:-55944989 Msa1164310:CDS
TGAAGGTAGCATGTCTTATG+CGG 0.655262 7_4:-55945437 Msa1164310:CDS
AGACACCAACAATCTGGCCA+GGG 0.657108 7_4:+55941843 None:intergenic
AAATACTGAAGCCATGACGA+AGG 0.663599 7_4:-55945713 Msa1164310:CDS
AAAATTGGAAACATGCTGTG+AGG 0.670199 7_4:-55944991 Msa1164310:CDS
AAGTTATGGAGAAGGTTGAG+TGG 0.683312 7_4:+55945628 None:intergenic
GAACGAAACCAAAGACCACG+AGG 0.685629 7_4:-55945366 Msa1164310:CDS
CTGCGCGATTTAGAATACCC+TGG 0.695519 7_4:-55941860 Msa1164310:CDS
ACATGCTACCTTCATCACAT+GGG 0.704522 7_4:+55945446 None:intergenic
AAATATTCCACAAAACACAG+TGG 0.735384 7_4:-55945503 Msa1164310:CDS
TATCATCACAGAGTCCCGCG+TGG 0.741838 7_4:-55942300 Msa1164310:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATCTATTATGTTT+TGG - chr7_4:55943661-55943680 Msa1164310:intron 10.0%
!! TGAAAAAAAAAAGTAAAAAA+AGG + chr7_4:55944553-55944572 None:intergenic 10.0%
!!! TTTTTCTTATCTTGTTTTTT+CGG + chr7_4:55942108-55942127 None:intergenic 15.0%
!! AAAACAAGATAAGAAAAATT+TGG - chr7_4:55942110-55942129 Msa1164310:CDS 15.0%
!!! TGTATGATTTTCTTTTTAAA+AGG - chr7_4:55943028-55943047 Msa1164310:intron 15.0%
!! TCAAAACTTATAGATTAAAA+AGG + chr7_4:55943466-55943485 None:intergenic 15.0%
!!! AAATTTGTCACAAATTTTAT+AGG + chr7_4:55943776-55943795 None:intergenic 15.0%
!! TTACAAATATTTCAAAATGA+AGG + chr7_4:55943872-55943891 None:intergenic 15.0%
!!! TTCATTTTGAAATATTTGTA+AGG - chr7_4:55943871-55943890 Msa1164310:intron 15.0%
!! ATTTATATCTAAGAATTAGA+GGG + chr7_4:55944702-55944721 None:intergenic 15.0%
!! TATTTATATCTAAGAATTAG+AGG + chr7_4:55944703-55944722 None:intergenic 15.0%
!! TTGACATTAATAGGTAATAT+TGG + chr7_4:55942147-55942166 None:intergenic 20.0%
!! TTAGATACAAAGGATAAAAA+CGG - chr7_4:55942318-55942337 Msa1164310:intron 20.0%
!!! TTTACAGTCTTATACAAAAT+TGG - chr7_4:55942433-55942452 Msa1164310:intron 20.0%
!! CTTTGTACTCAAAATTAATT+AGG - chr7_4:55942536-55942555 Msa1164310:intron 20.0%
!! ATATAGAAAAACAAATTCCT+AGG + chr7_4:55942680-55942699 None:intergenic 20.0%
!! TTGATAAAAAGACCAATATT+AGG + chr7_4:55942999-55943018 None:intergenic 20.0%
!!! ATTTATCTATTATGTTTTGG+TGG - chr7_4:55943664-55943683 Msa1164310:intron 20.0%
!!! TTTATCTATTATGTTTTGGT+GGG - chr7_4:55943665-55943684 Msa1164310:intron 20.0%
!! AATATTTCAAAATGAAGGTA+CGG + chr7_4:55943867-55943886 None:intergenic 20.0%
!!! TATTTTATGGACTAACAATT+TGG - chr7_4:55944427-55944446 Msa1164310:intron 20.0%
!! ATAGAAAATCAAGATTGAAA+AGG + chr7_4:55945068-55945087 None:intergenic 20.0%
!! TAATTACATACATACATACA+CGG - chr7_4:55945366-55945385 Msa1164310:CDS 20.0%
!!! ATTGCTTTAAACTAATTCAT+GGG + chr7_4:55945403-55945422 None:intergenic 20.0%
!!! AATTGCTTTAAACTAATTCA+TGG + chr7_4:55945404-55945423 None:intergenic 20.0%
!! ATTATGAATGATTATATGCT+AGG + chr7_4:55945508-55945527 None:intergenic 20.0%
!!! TGTTGAAACTAATTTTGAAA+AGG - chr7_4:55945712-55945731 Msa1164310:CDS 20.0%
!!! GTTGAAACTAATTTTGAAAA+GGG - chr7_4:55945713-55945732 Msa1164310:CDS 20.0%
! ATACATGGAAAAAGCAAAAA+CGG - chr7_4:55941786-55941805 Msa1164310:CDS 25.0%
! TCTTCTTCAGAATAAAATTG+TGG + chr7_4:55941868-55941887 None:intergenic 25.0%
!!! TTTGGTTTCGTTCTTTTATT+TGG + chr7_4:55942066-55942085 None:intergenic 25.0%
! ACATTAATAGGTAATATTGG+CGG + chr7_4:55942144-55942163 None:intergenic 25.0%
! ATCTTGTTCTTGACATTAAT+AGG + chr7_4:55942156-55942175 None:intergenic 25.0%
!!! TTGTGAAGCTTCTAAAATAA+GGG + chr7_4:55942377-55942396 None:intergenic 25.0%
!!! ATTGTGAAGCTTCTAAAATA+AGG + chr7_4:55942378-55942397 None:intergenic 25.0%
!!! CAAAACACCAAACTTTTTTA+AGG - chr7_4:55942842-55942861 Msa1164310:intron 25.0%
! GAAAGATCCTTAAAAAAGTT+TGG + chr7_4:55942852-55942871 None:intergenic 25.0%
!! GGACAAAATATTTTCTTACT+AGG - chr7_4:55942949-55942968 Msa1164310:intron 25.0%
! TTTCTCTTTATGCCTAATAT+TGG - chr7_4:55942984-55943003 Msa1164310:intron 25.0%
! TAGCAGGAAGAATTATTATA+TGG - chr7_4:55943310-55943329 Msa1164310:intron 25.0%
!! ATTATTTTCCTTGATCATGT+TGG - chr7_4:55943439-55943458 Msa1164310:intron 25.0%
! GTCTGTGATAAAATCATTTA+TGG - chr7_4:55943531-55943550 Msa1164310:intron 25.0%
!! TATTTGAAGTCTTAAACTAG+AGG + chr7_4:55944143-55944162 None:intergenic 25.0%
! ATAGAGCACAGTTTAAATTT+CGG + chr7_4:55944354-55944373 None:intergenic 25.0%
!! TTAGGAAAGTAAGAATTTTG+AGG + chr7_4:55944456-55944475 None:intergenic 25.0%
! ATTAGAGGGTAAATTTAGAT+AGG + chr7_4:55944688-55944707 None:intergenic 25.0%
! ATTACAAGATTTCAAGATGA+TGG + chr7_4:55944842-55944861 None:intergenic 25.0%
! GTATCAAGATAAAGATATAG+AGG + chr7_4:55944869-55944888 None:intergenic 25.0%
! ATCAAGATTGAAAAGGAAAA+TGG + chr7_4:55945061-55945080 None:intergenic 25.0%
! AAACAGAACTGTAGTAATTA+AGG - chr7_4:55945091-55945110 Msa1164310:CDS 25.0%
!! ACAGAAATTTGCTATCACTA+AGG - chr7_4:55941750-55941769 Msa1164310:CDS 30.0%
!!! GTGGAATATTTTGAGTTTCT+TGG + chr7_4:55941927-55941946 None:intergenic 30.0%
AAATATTCCACAAAACACAG+TGG - chr7_4:55941936-55941955 Msa1164310:intron 30.0%
TAATGTCAAGAACAAGATCA+AGG - chr7_4:55942158-55942177 Msa1164310:CDS 30.0%
AAAGGAGACTTTAGATACAA+AGG - chr7_4:55942308-55942327 Msa1164310:intron 30.0%
AAAGGATAAAAACGGTAAAC+CGG - chr7_4:55942326-55942345 Msa1164310:intron 30.0%
TAGGTCAAAAACTCAACATT+TGG - chr7_4:55942487-55942506 Msa1164310:intron 30.0%
AACTCAACATTTGGTCATTT+AGG - chr7_4:55942496-55942515 Msa1164310:intron 30.0%
ACTCAACATTTGGTCATTTA+GGG - chr7_4:55942497-55942516 Msa1164310:intron 30.0%
TACTTCTCTGTATCAATGTA+TGG - chr7_4:55942782-55942801 Msa1164310:intron 30.0%
TTATAGCACACTCAATAAAC+AGG + chr7_4:55943136-55943155 None:intergenic 30.0%
! TATGGTCTTCAATTTGCTTA+TGG - chr7_4:55943328-55943347 Msa1164310:intron 30.0%
AAATAATGTAGAGTCACCTA+AGG + chr7_4:55943426-55943445 None:intergenic 30.0%
AACTTAGTCTCATACATTCA+AGG + chr7_4:55943608-55943627 None:intergenic 30.0%
AGTCTCAAAGATTACGAATT+TGG + chr7_4:55943740-55943759 None:intergenic 30.0%
! TTGAGCTGATTCAATTTGAT+TGG - chr7_4:55943809-55943828 Msa1164310:intron 30.0%
! TAACCATTAGCTTAAATGCT+TGG + chr7_4:55943842-55943861 None:intergenic 30.0%
ACATAATCAAAATCACAGCT+AGG + chr7_4:55943902-55943921 None:intergenic 30.0%
AAAACCTTGCATATGATAGA+AGG + chr7_4:55943940-55943959 None:intergenic 30.0%
! AACAACTTACCTTTTTGTTG+CGG + chr7_4:55943991-55944010 None:intergenic 30.0%
ACTTGTATACTCAATGTTGT+CGG + chr7_4:55944377-55944396 None:intergenic 30.0%
!!! CAACTGTGTGACTTATTTTA+TGG - chr7_4:55944414-55944433 Msa1164310:intron 30.0%
TTCCTAACTTCAAACTTAGT+TGG - chr7_4:55944469-55944488 Msa1164310:intron 30.0%
! TACCAACTAAGTTTGAAGTT+AGG + chr7_4:55944474-55944493 None:intergenic 30.0%
! TTGAAGTTCCTCTATGATTT+TGG - chr7_4:55944511-55944530 Msa1164310:intron 30.0%
AACTGTTTCCAAAATCATAG+AGG + chr7_4:55944522-55944541 None:intergenic 30.0%
!!! AGTTAGTTGGTTATTTTGGT+TGG + chr7_4:55944588-55944607 None:intergenic 30.0%
! AGTCAGTTAGTTGGTTATTT+TGG + chr7_4:55944592-55944611 None:intergenic 30.0%
AATAAAGTGAGTCAGTTAGT+TGG + chr7_4:55944601-55944620 None:intergenic 30.0%
! GATAGGTAGAAATTGACTTT+GGG + chr7_4:55944671-55944690 None:intergenic 30.0%
! AGATAGGTAGAAATTGACTT+TGG + chr7_4:55944672-55944691 None:intergenic 30.0%
AGAACAAACTCTTATTCTGT+GGG + chr7_4:55944794-55944813 None:intergenic 30.0%
CTGTAGTAATTAAGGCATAA+TGG - chr7_4:55945099-55945118 Msa1164310:CDS 30.0%
AGAGATATCTTGACATTACT+TGG - chr7_4:55945211-55945230 Msa1164310:CDS 30.0%
ATGAACAGAAAGAAAATGCA+TGG - chr7_4:55945466-55945485 Msa1164310:CDS 30.0%
TGAACAGAAAGAAAATGCAT+GGG - chr7_4:55945467-55945486 Msa1164310:CDS 30.0%
CTGCATATTCATCATTAGTA+AGG + chr7_4:55945629-55945648 None:intergenic 30.0%
! TTCAACATATGATAGTGCAA+GGG + chr7_4:55945699-55945718 None:intergenic 30.0%
! TTTCAACATATGATAGTGCA+AGG + chr7_4:55945700-55945719 None:intergenic 30.0%
AAATTTCTGTTCCTTCGTCA+TGG + chr7_4:55941740-55941759 None:intergenic 35.0%
ATCACTAAGGAGAAGATCAA+AGG - chr7_4:55941763-55941782 Msa1164310:CDS 35.0%
AAGTAGCGAATACCAAGAAA+AGG - chr7_4:55941965-55941984 Msa1164310:intron 35.0%
TTAATAGGTAATATTGGCGG+AGG + chr7_4:55942141-55942160 None:intergenic 35.0%
AACAAGATCAAGGAGTTGAA+TGG - chr7_4:55942168-55942187 Msa1164310:CDS 35.0%
! GTGGCATTAAAAGACGATTT+TGG + chr7_4:55942251-55942270 None:intergenic 35.0%
! TTTTCTCACCAAGACAGAAA+AGG - chr7_4:55942290-55942309 Msa1164310:CDS 35.0%
! TAAAGTCTCCTTTTCTGTCT+TGG + chr7_4:55942301-55942320 None:intergenic 35.0%
ACAATCACTTCTAAACCAAC+CGG + chr7_4:55942348-55942367 None:intergenic 35.0%
TGGTTTAGAAGTGATTGTGT+TGG - chr7_4:55942350-55942369 Msa1164310:intron 35.0%
AGTGGAGAATGACTGATAAA+TGG - chr7_4:55942409-55942428 Msa1164310:intron 35.0%
GTGGAGAATGACTGATAAAT+GGG - chr7_4:55942410-55942429 Msa1164310:intron 35.0%
AAAATTGGAAACATGCTGTG+AGG - chr7_4:55942448-55942467 Msa1164310:intron 35.0%
AAATTGGAAACATGCTGTGA+GGG - chr7_4:55942449-55942468 Msa1164310:intron 35.0%
!!! AGGGGAAATGGTTTTGAAAT+AGG - chr7_4:55942468-55942487 Msa1164310:intron 35.0%
! GTACTTTGTTTATGCGTTTC+TGG - chr7_4:55942600-55942619 Msa1164310:intron 35.0%
! CAGTTTTTGCTCTCTTTCAT+TGG - chr7_4:55942704-55942723 Msa1164310:intron 35.0%
! TAAGGATCTTTCCTTTTGTG+AGG - chr7_4:55942860-55942879 Msa1164310:intron 35.0%
ATGCAATCAAACCTCACAAA+AGG + chr7_4:55942874-55942893 None:intergenic 35.0%
ATCAGTTCAGAATCTTTACC+TGG - chr7_4:55942906-55942925 Msa1164310:intron 35.0%
TAGTATGTGTCAAGTTCTGT+TGG - chr7_4:55943082-55943101 Msa1164310:intron 35.0%
AATCTCCAGTTTCATATGCA+GGG - chr7_4:55943262-55943281 Msa1164310:intron 35.0%
! GACAACTTGTTCTAAGTAGT+TGG - chr7_4:55943350-55943369 Msa1164310:intron 35.0%
CAATTTGACTATGACACCTT+AGG - chr7_4:55943407-55943426 Msa1164310:intron 35.0%
AAAAAGGACCAACATGATCA+AGG + chr7_4:55943450-55943469 None:intergenic 35.0%
! TTTTCTCAAAACATTCGCAG+TGG - chr7_4:55943556-55943575 Msa1164310:intron 35.0%
AGTCTCATACATTCAAGGAT+GGG + chr7_4:55943603-55943622 None:intergenic 35.0%
TAGTCTCATACATTCAAGGA+TGG + chr7_4:55943604-55943623 None:intergenic 35.0%
TTTGGTGGGATATAAGTGTT+TGG - chr7_4:55943679-55943698 Msa1164310:intron 35.0%
! CATTGACACAAAGACGATTT+TGG + chr7_4:55943710-55943729 None:intergenic 35.0%
ATCGTCTTTGTGTCAATGTT+AGG - chr7_4:55943712-55943731 Msa1164310:intron 35.0%
TCGTCTTTGTGTCAATGTTA+GGG - chr7_4:55943713-55943732 Msa1164310:intron 35.0%
TTGCCAAGCATTTAAGCTAA+TGG - chr7_4:55943836-55943855 Msa1164310:intron 35.0%
ATGATAGAAGGAACATGGAA+TGG + chr7_4:55943928-55943947 None:intergenic 35.0%
TGCATATGATAGAAGGAACA+TGG + chr7_4:55943933-55943952 None:intergenic 35.0%
TGTTCCTTCTATCATATGCA+AGG - chr7_4:55943933-55943952 Msa1164310:intron 35.0%
! TTTTGTTGCGGCATTTTTCT+CGG + chr7_4:55943979-55943998 None:intergenic 35.0%
AGAAAAATGCCGCAACAAAA+AGG - chr7_4:55943979-55943998 Msa1164310:intron 35.0%
AAACTAGAGGAAGAGTCTAA+AGG + chr7_4:55944130-55944149 None:intergenic 35.0%
GAGAACAAACTCTTATTCTG+TGG + chr7_4:55944795-55944814 None:intergenic 35.0%
! ATAAGAGTTTGTTCTCCACA+AGG - chr7_4:55944799-55944818 Msa1164310:intron 35.0%
GAAAGAACTCTTGATTACGT+GGG + chr7_4:55944963-55944982 None:intergenic 35.0%
AGAAAGAACTCTTGATTACG+TGG + chr7_4:55944964-55944983 None:intergenic 35.0%
!! TGGATTAAAAGTACTGGTTG+TGG - chr7_4:55945159-55945178 Msa1164310:CDS 35.0%
AGATGATGATCTTGTTCGAA+TGG - chr7_4:55945183-55945202 Msa1164310:CDS 35.0%
! TATCTTGACATTACTTGGTG+TGG - chr7_4:55945216-55945235 Msa1164310:CDS 35.0%
TAAATTCGACCTCATTCTCA+TGG - chr7_4:55945297-55945316 Msa1164310:CDS 35.0%
GAACAGAAAGAAAATGCATG+GGG - chr7_4:55945468-55945487 Msa1164310:CDS 35.0%
GATGATCTACATCATGAAGA+TGG - chr7_4:55945669-55945688 Msa1164310:CDS 35.0%
AAATACTGAAGCCATGACGA+AGG - chr7_4:55941726-55941745 Msa1164310:CDS 40.0%
GGAGAAGATCAAAGGATACA+TGG - chr7_4:55941771-55941790 Msa1164310:CDS 40.0%
AAGTTATGGAGAAGGTTGAG+TGG + chr7_4:55941814-55941833 None:intergenic 40.0%
ACCTTCTCCATAACTTTGCT+TGG - chr7_4:55941818-55941837 Msa1164310:CDS 40.0%
ATTCCACAAAACACAGTGGA+AGG - chr7_4:55941940-55941959 Msa1164310:intron 40.0%
ACATGCTACCTTCATCACAT+GGG + chr7_4:55941996-55942015 None:intergenic 40.0%
TGAAGGTAGCATGTCTTATG+CGG - chr7_4:55942002-55942021 Msa1164310:intron 40.0%
TTTGCGTCAGATATCGATGA+AGG - chr7_4:55942225-55942244 Msa1164310:CDS 40.0%
CCAAGTTCGTCTTCTTTAAG+TGG + chr7_4:55942270-55942289 None:intergenic 40.0%
CCACTTAAAGAAGACGAACT+TGG - chr7_4:55942267-55942286 Msa1164310:CDS 40.0%
GATAAAAACGGTAAACCGGT+TGG - chr7_4:55942330-55942349 Msa1164310:intron 40.0%
TCACAATGTGCTTCAAGAAG+TGG - chr7_4:55942391-55942410 Msa1164310:intron 40.0%
AATTGGAAACATGCTGTGAG+GGG - chr7_4:55942450-55942469 Msa1164310:intron 40.0%
! CATTTGGTCATTTAGGGTCA+AGG - chr7_4:55942503-55942522 Msa1164310:intron 40.0%
!! TGTTTATGCGTTTCTGGCTT+TGG - chr7_4:55942606-55942625 Msa1164310:intron 40.0%
! AGTCTAGAACTTGTGTTACC+AGG + chr7_4:55942927-55942946 None:intergenic 40.0%
!! GTAACACAAGTTCTAGACTC+TGG - chr7_4:55942928-55942947 Msa1164310:intron 40.0%
AGCACACTCAATAAACAGGA+TGG + chr7_4:55943132-55943151 None:intergenic 40.0%
GATTCTCTTGCAACTACTTC+AGG + chr7_4:55943246-55943265 None:intergenic 40.0%
GAATCTCCAGTTTCATATGC+AGG - chr7_4:55943261-55943280 Msa1164310:intron 40.0%
ATCTCCAGTTTCATATGCAG+GGG - chr7_4:55943263-55943282 Msa1164310:intron 40.0%
ACTATTGAAGTTGCTGCTAG+TGG + chr7_4:55943291-55943310 None:intergenic 40.0%
TCATACATTCAAGGATGGGA+AGG + chr7_4:55943599-55943618 None:intergenic 40.0%
! TGACACAAAGACGATTTTGG+TGG + chr7_4:55943707-55943726 None:intergenic 40.0%
! CATTTTTCTCGGTAATTGGC+TGG + chr7_4:55943968-55943987 None:intergenic 40.0%
GCTGTAAAAATGGGGGAAAA+CGG + chr7_4:55944015-55944034 None:intergenic 40.0%
TTTCGTCGCGCTGTAAAAAT+GGG + chr7_4:55944024-55944043 None:intergenic 40.0%
ATTTCGTCGCGCTGTAAAAA+TGG + chr7_4:55944025-55944044 None:intergenic 40.0%
! CGAAATTTTATACGCGATCG+CGG - chr7_4:55944316-55944335 Msa1164310:intron 40.0%
TTAAATTTCGGTCCCAGTCA+AGG + chr7_4:55944342-55944361 None:intergenic 40.0%
GAGTTCTTTCTTTCTCCACA+AGG - chr7_4:55944973-55944992 Msa1164310:CDS 40.0%
! ACCAGTACTTTTAATCCACG+CGG + chr7_4:55945157-55945176 None:intergenic 40.0%
GAAACTCACGCAGTCAAAAA+TGG - chr7_4:55945238-55945257 Msa1164310:CDS 40.0%
AAAGAAGCCTTAGACCTCAT+TGG - chr7_4:55945262-55945281 Msa1164310:CDS 40.0%
AACCGTAATTCCATCCATGA+CGG + chr7_4:55945335-55945354 None:intergenic 40.0%
TATGCAGAATTTCGCAATGC+AGG - chr7_4:55945642-55945661 Msa1164310:CDS 40.0%
ATGCAGAATTTCGCAATGCA+GGG - chr7_4:55945643-55945662 Msa1164310:CDS 40.0%
GCCAAGCAAAGTTATGGAGA+AGG + chr7_4:55941822-55941841 None:intergenic 45.0%
CGCATTGCCAAGCAAAGTTA+TGG + chr7_4:55941828-55941847 None:intergenic 45.0%
! TCTCCTTCCACTGTGTTTTG+TGG + chr7_4:55941946-55941965 None:intergenic 45.0%
! ACATGGGTGACACCTTTTCT+TGG + chr7_4:55941980-55941999 None:intergenic 45.0%
GACATGCTACCTTCATCACA+TGG + chr7_4:55941997-55942016 None:intergenic 45.0%
GAAACCAAAGACCACGAAGA+AGG - chr7_4:55942035-55942054 Msa1164310:intron 45.0%
! ATTTGGTTCCACCTTCTTCG+TGG + chr7_4:55942049-55942068 None:intergenic 45.0%
AAACATGCTGTGAGGGGAAA+TGG - chr7_4:55942456-55942475 Msa1164310:intron 45.0%
!!! TGCGTTTCTGGCTTTGGTTT+TGG - chr7_4:55942612-55942631 Msa1164310:intron 45.0%
CTACTACAGCACATGAACAG+GGG + chr7_4:55942645-55942664 None:intergenic 45.0%
GCTACTACAGCACATGAACA+GGG + chr7_4:55942646-55942665 None:intergenic 45.0%
TGCTACTACAGCACATGAAC+AGG + chr7_4:55942647-55942666 None:intergenic 45.0%
TGTGCTGTAGTAGCATGAGA+AGG - chr7_4:55942652-55942671 Msa1164310:intron 45.0%
AGTAGCATGAGAAGGAACCT+AGG - chr7_4:55942660-55942679 Msa1164310:intron 45.0%
GCAGCAACTTCAATAGTAGC+AGG - chr7_4:55943294-55943313 Msa1164310:intron 45.0%
ATGGGAAGGCTAAAGCTCAT+AGG + chr7_4:55943585-55943604 None:intergenic 45.0%
! GCGGCATTTTTCTCGGTAAT+TGG + chr7_4:55943972-55943991 None:intergenic 45.0%
TTCGTCGCGCTGTAAAAATG+GGG + chr7_4:55944023-55944042 None:intergenic 45.0%
AGCGCGACGAAATATCGTTA+TGG - chr7_4:55944032-55944051 Msa1164310:intron 45.0%
GCGCGACGAAATATCGTTAT+GGG - chr7_4:55944033-55944052 Msa1164310:intron 45.0%
ATGCAGTTGTACTTGCCTTG+TGG + chr7_4:55944817-55944836 None:intergenic 45.0%
! CCAGTACTTTTAATCCACGC+GGG + chr7_4:55945156-55945175 None:intergenic 45.0%
TGATCCTAGCCATGAGAATG+AGG + chr7_4:55945309-55945328 None:intergenic 45.0%
ACCGTAATTCCATCCATGAC+GGG + chr7_4:55945334-55945353 None:intergenic 45.0%
GTCATGGATGGAATTACGGT+TGG - chr7_4:55945334-55945353 Msa1164310:CDS 45.0%
CATTCATATGTGTGCACTGC+AGG - chr7_4:55945545-55945564 Msa1164310:CDS 45.0%
! AGGTGTCACCCATGTGATGA+AGG - chr7_4:55941985-55942004 Msa1164310:intron 50.0%
ACCAAAGACCACGAAGAAGG+TGG - chr7_4:55942038-55942057 Msa1164310:intron 50.0%
TCCACCTTCTTCGTGGTCTT+TGG + chr7_4:55942042-55942061 None:intergenic 50.0%
GAACGAAACCAAAGACCACG+AGG - chr7_4:55942031-55942050 Msa1164310:intron 50.0%
GAAACCAAAGACCACGAGGA+AGG - chr7_4:55942077-55942096 Msa1164310:intron 50.0%
TCGTCGCGCTGTAAAAATGG+GGG + chr7_4:55944022-55944041 None:intergenic 50.0%
GTCGCAGATTTCGCGATTTC+AGG + chr7_4:55944255-55944274 None:intergenic 50.0%
TTGCAGTAGCACTTGCCTTG+TGG + chr7_4:55944991-55945010 None:intergenic 50.0%
GGGACTCTGTGATGATATGG+AGG + chr7_4:55945136-55945155 None:intergenic 50.0%
! CCCGCGTGGATTAAAAGTAC+TGG - chr7_4:55945153-55945172 Msa1164310:CDS 50.0%
AGCCTTAGACCTCATTGGCA+CGG - chr7_4:55945267-55945286 Msa1164310:CDS 50.0%
AACCGTGCCAATGAGGTCTA+AGG + chr7_4:55945272-55945291 None:intergenic 50.0%
TACGTTCAACCGTGCCAATG+AGG + chr7_4:55945279-55945298 None:intergenic 50.0%
TCGACCTCATTCTCATGGCT+AGG - chr7_4:55945302-55945321 Msa1164310:CDS 50.0%
GCCCGTCATGGATGGAATTA+CGG - chr7_4:55945330-55945349 Msa1164310:CDS 50.0%
! CTGCGCGATTTAGAATACCC+TGG - chr7_4:55945579-55945598 Msa1164310:CDS 50.0%
GAATACCCTGGCCAGATTGT+TGG - chr7_4:55945591-55945610 Msa1164310:CDS 50.0%
AGACACCAACAATCTGGCCA+GGG + chr7_4:55945599-55945618 None:intergenic 50.0%
GACGTGAGACACCAACAATC+TGG + chr7_4:55945605-55945624 None:intergenic 50.0%
ACCAAAGACCACGAGGAAGG+TGG - chr7_4:55942080-55942099 Msa1164310:intron 55.0%
TCCACCTTCCTCGTGGTCTT+TGG + chr7_4:55942084-55942103 None:intergenic 55.0%
TTTCGGTTCCACCTTCCTCG+TGG + chr7_4:55942091-55942110 None:intergenic 55.0%
GGCACCCCTGCATATGAAAC+TGG + chr7_4:55943270-55943289 None:intergenic 55.0%
CGCGGGACTCTGTGATGATA+TGG + chr7_4:55945139-55945158 None:intergenic 55.0%
TATCATCACAGAGTCCCGCG+TGG - chr7_4:55945139-55945158 Msa1164310:CDS 55.0%
AGGATCATGCCCGTCATGGA+TGG - chr7_4:55945322-55945341 Msa1164310:CDS 55.0%
GAGACACCAACAATCTGGCC+AGG + chr7_4:55945600-55945619 None:intergenic 55.0%
GGCTAGGATCATGCCCGTCA+TGG - chr7_4:55945318-55945337 Msa1164310:CDS 60.0%
TACGCGATCGCGGCCTTGAC+TGG - chr7_4:55944326-55944345 Msa1164310:intron 65.0%
ACGCGATCGCGGCCTTGACT+GGG - chr7_4:55944327-55944346 Msa1164310:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55941709 55945752 55941709 ID=Msa1164310;Name=Msa1164310
chr7_4 mRNA 55941709 55945752 55941709 ID=Msa1164310-mRNA-1;Parent=Msa1164310;Name=Msa1164310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|402
chr7_4 exon 55944932 55945752 55944932 ID=Msa1164310-mRNA-1:exon:16462;Parent=Msa1164310-mRNA-1
chr7_4 exon 55942110 55942311 55942110 ID=Msa1164310-mRNA-1:exon:16461;Parent=Msa1164310-mRNA-1
chr7_4 exon 55941709 55941894 55941709 ID=Msa1164310-mRNA-1:exon:16460;Parent=Msa1164310-mRNA-1
chr7_4 CDS 55944932 55945752 55944932 ID=Msa1164310-mRNA-1:cds;Parent=Msa1164310-mRNA-1
chr7_4 CDS 55942110 55942311 55942110 ID=Msa1164310-mRNA-1:cds;Parent=Msa1164310-mRNA-1
chr7_4 CDS 55941709 55941894 55941709 ID=Msa1164310-mRNA-1:cds;Parent=Msa1164310-mRNA-1
Gene Sequence

>Msa1164310

ATGTTGCAGAACAATCAAAATACTGAAGCCATGACGAAGGAACAGAAATTTGCTATCACTAAGGAGAAGATCAAAGGATACATGGAAAAAGCAAAAACGGCGCCACTCAACCTTCTCCATAACTTTGCTTGGCAATGCGTGATAGCTAAACATGCTCCACAATTTTATTCTGAAGAAGAGTTAGCACAAATAAAGAAACACAGTCAACTTGTTCTCCAAGAAACTCAAAATATTCCACAAAACACAGTGGAAGGAGAAGTAGCGAATACCAAGAAAAGGTGTCACCCATGTGATGAAGGTAGCATGTCTTATGCGGAAAGAAGAACGAAACCAAAGACCACGAAGAAGGTGGAACCAAATAAAAGAACGAAACCAAAGACCACGAGGAAGGTGGAACCGAAAAAACAAGATAAGAAAAATTTGGCGTTACCTCCGCCAATATTACCTATTAATGTCAAGAACAAGATCAAGGAGTTGAATGGCACTGATATCAGATATATCATGTCAAAGAAATTGTTTGCGTCAGATATCGATGAAGGCCAAAATCGTCTTTTAATGCCACTTAAAGAAGACGAACTTGGTTTTCTCACCAAGACAGAAAAGGAGACTTTAGATACAAAGGATAAAAACGGTAAACCGGTTGGTTTAGAAGTGATTGTGTTGGACCCTTATTTTAGAAGCTTCACAATGTGCTTCAAGAAGTGGAGAATGACTGATAAATGGGTTTACAGTCTTATACAAAATTGGAAACATGCTGTGAGGGGAAATGGTTTTGAAATAGGTCAAAAACTCAACATTTGGTCATTTAGGGTCAAGGACAAAGTCCCGCGTGGATTAAAAGTACTGGTTGTGGAAGATGATGATCTTGTTCGAATGGCTCATAGAGATATCTTGACATTACTTGGTGTGGAAACTCACGCAGTCAAAAATGGTAAAGAAGCCTTAGACCTCATTGGCACGGTTGAACGTAAATTCGACCTCATTCTCATGGCTAGGATCATGCCCGTCATGGATGGAATTACGGCAACAAAGAAGCTGCGCGATTTAGAATACCCTGGCCAGATTGTTGGTGTCTCACGTCGCCTTACTAATGATGAATATGCAGAATTTCGCAATGCAGGGCTAGATGATCTACATCATGAAGATGGAATACCCTTGCACTATCATATGTTGAAACTAATTTTGAAAAGGGTTCTTCCTGTCAACTAG

Protein sequence

>Msa1164310

MLQNNQNTEAMTKEQKFAITKEKIKGYMEKAKTAPLNLLHNFAWQCVIAKHAPQFYSEEELAQIKKHSQLVLQETQNIPQNTVEGEVANTKKRCHPCDEGSMSYAERRTKPKTTKKVEPNKRTKPKTTRKVEPKKQDKKNLALPPPILPINVKNKIKELNGTDIRYIMSKKLFASDIDEGQNRLLMPLKEDELGFLTKTEKETLDTKDKNGKPVGLEVIVLDPYFRSFTMCFKKWRMTDKWVYSLIQNWKHAVRGNGFEIGQKLNIWSFRVKDKVPRGLKVLVVEDDDLVRMAHRDILTLLGVETHAVKNGKEALDLIGTVERKFDLILMARIMPVMDGITATKKLRDLEYPGQIVGVSRRLTNDEYAEFRNAGLDDLHHEDGIPLHYHMLKLILKRVLPVN*