Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164310 | RHN48301.1 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164310 | sp|Q9LSF7|Y3518_ARATH | 27.599 | 279 | 150 | 8 | 21 | 270 | 70 | 325 | 1.02e-16 | 84.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164310 | A0A396H6Z6 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Gene ID | Type | Classification |
---|---|---|
Msa1164310 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164310 | MtrunA17_Chr7g0262311 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Msa1164310 | MtrunA17_Chr5g0395781 | 50.352 | 284 | 115 | 7 | 1 | 275 | 1 | 267 | 7.88e-84 | 257 |
Msa1164310 | MtrunA17_Chr5g0395751 | 57.940 | 233 | 64 | 4 | 16 | 234 | 6 | 218 | 1.21e-69 | 219 |
Msa1164310 | MtrunA17_Chr5g0395741 | 53.365 | 208 | 74 | 4 | 71 | 275 | 118 | 305 | 2.43e-54 | 182 |
Msa1164310 | MtrunA17_Chr3g0097201 | 58.857 | 175 | 57 | 2 | 102 | 275 | 1 | 161 | 1.07e-52 | 173 |
Msa1164310 | MtrunA17_Chr3g0097211 | 67.816 | 87 | 25 | 1 | 6 | 89 | 2 | 88 | 6.32e-30 | 113 |
Msa1164310 | MtrunA17_Chr4g0033741 | 38.095 | 189 | 90 | 7 | 35 | 222 | 10 | 172 | 1.19e-23 | 96.7 |
Msa1164310 | MtrunA17_Chr5g0444241 | 37.584 | 149 | 88 | 3 | 129 | 272 | 186 | 334 | 3.66e-23 | 99.4 |
Msa1164310 | MtrunA17_Chr7g0262351 | 47.500 | 120 | 58 | 3 | 279 | 398 | 22 | 136 | 4.64e-23 | 94.0 |
Msa1164310 | MtrunA17_Chr8g0364781 | 45.545 | 101 | 52 | 2 | 279 | 377 | 12 | 111 | 2.59e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164310 | AT5G26594.1 | 39.167 | 120 | 69 | 2 | 279 | 398 | 18 | 133 | 5.74e-17 | 77.8 |
Msa1164310 | AT3G04280.1 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1164310 | AT3G04280.2 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1164310 | AT3G04280.3 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1164310 | AT3G24850.1 | 30.556 | 180 | 102 | 6 | 115 | 285 | 183 | 348 | 2.90e-13 | 70.9 |
Msa1164310 | AT2G31720.1 | 32.099 | 162 | 104 | 3 | 156 | 314 | 137 | 295 | 7.03e-13 | 69.3 |
Msa1164310 | AT1G05920.1 | 31.746 | 126 | 78 | 4 | 156 | 273 | 171 | 296 | 1.52e-11 | 65.5 |
Msa1164310 | AT5G24050.1 | 25.610 | 246 | 158 | 6 | 35 | 271 | 100 | 329 | 3.45e-11 | 64.7 |
Find 82 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTCAACATTTGGTCATTT+AGG | 0.092697 | 7_4:-55944943 | Msa1164310:CDS |
TTTACAGTCTTATACAAAAT+TGG | 0.190742 | 7_4:-55945006 | Msa1164310:CDS |
GTGGCATTAAAAGACGATTT+TGG | 0.230260 | 7_4:+55945191 | None:intergenic |
AGTGGAGAATGACTGATAAA+TGG | 0.236879 | 7_4:-55945030 | Msa1164310:CDS |
TCCACCTTCTTCGTGGTCTT+TGG | 0.253725 | 7_4:+55945400 | None:intergenic |
ACTCAACATTTGGTCATTTA+GGG | 0.255771 | 7_4:-55944942 | Msa1164310:CDS |
TCCACCTTCCTCGTGGTCTT+TGG | 0.286800 | 7_4:+55945358 | None:intergenic |
ATCTTGTTCTTGACATTAAT+AGG | 0.287639 | 7_4:+55945286 | None:intergenic |
ATTGTGAAGCTTCTAAAATA+AGG | 0.305880 | 7_4:+55945064 | None:intergenic |
TTGACATTAATAGGTAATAT+TGG | 0.338094 | 7_4:+55945295 | None:intergenic |
CCAAGTTCGTCTTCTTTAAG+TGG | 0.388473 | 7_4:+55945172 | None:intergenic |
CGCATTGCCAAGCAAAGTTA+TGG | 0.391834 | 7_4:+55945614 | None:intergenic |
GCCCGTCATGGATGGAATTA+CGG | 0.406314 | 7_4:-55942109 | Msa1164310:intron |
CTGCATATTCATCATTAGTA+AGG | 0.410681 | 7_4:+55941813 | None:intergenic |
GTGGAGAATGACTGATAAAT+GGG | 0.417628 | 7_4:-55945029 | Msa1164310:CDS |
ACCTTCTCCATAACTTTGCT+TGG | 0.420476 | 7_4:-55945621 | Msa1164310:CDS |
AGAGATATCTTGACATTACT+TGG | 0.437895 | 7_4:-55942228 | Msa1164310:CDS |
CCACTTAAAGAAGACGAACT+TGG | 0.439642 | 7_4:-55945172 | Msa1164310:CDS |
GAATACCCTGGCCAGATTGT+TGG | 0.444431 | 7_4:-55941848 | Msa1164310:CDS |
TTGTGAAGCTTCTAAAATAA+GGG | 0.449884 | 7_4:+55945065 | None:intergenic |
AACCGTGCCAATGAGGTCTA+AGG | 0.458884 | 7_4:+55942170 | None:intergenic |
TATGCAGAATTTCGCAATGC+AGG | 0.461823 | 7_4:-55941797 | Msa1164310:CDS |
AAACATGCTGTGAGGGGAAA+TGG | 0.465819 | 7_4:-55944983 | Msa1164310:CDS |
ACAATCACTTCTAAACCAAC+CGG | 0.487692 | 7_4:+55945094 | None:intergenic |
GACGTGAGACACCAACAATC+TGG | 0.490889 | 7_4:+55941837 | None:intergenic |
GATGATCTACATCATGAAGA+TGG | 0.493143 | 7_4:-55941770 | Msa1164310:CDS |
ATTTGGTTCCACCTTCTTCG+TGG | 0.495745 | 7_4:+55945393 | None:intergenic |
CCCGCGTGGATTAAAAGTAC+TGG | 0.511605 | 7_4:-55942286 | Msa1164310:CDS |
GAGACACCAACAATCTGGCC+AGG | 0.513873 | 7_4:+55941842 | None:intergenic |
AAAGAAGCCTTAGACCTCAT+TGG | 0.516268 | 7_4:-55942177 | Msa1164310:CDS |
TCACAATGTGCTTCAAGAAG+TGG | 0.523622 | 7_4:-55945048 | Msa1164310:CDS |
AGGATCATGCCCGTCATGGA+TGG | 0.527719 | 7_4:-55942117 | Msa1164310:CDS |
AAATTTCTGTTCCTTCGTCA+TGG | 0.529500 | 7_4:+55945702 | None:intergenic |
TATCTTGACATTACTTGGTG+TGG | 0.530817 | 7_4:-55942223 | Msa1164310:CDS |
AAATTGGAAACATGCTGTGA+GGG | 0.531590 | 7_4:-55944990 | Msa1164310:CDS |
TTTCAACATATGATAGTGCA+AGG | 0.532595 | 7_4:+55941742 | None:intergenic |
AAAAGGTCATGCTAGTTGAC+AGG | 0.534345 | 7_4:+55941698 | None:intergenic |
AGGTGTCACCCATGTGATGA+AGG | 0.535873 | 7_4:-55945454 | Msa1164310:CDS |
AAGTAGCGAATACCAAGAAA+AGG | 0.536745 | 7_4:-55945474 | Msa1164310:CDS |
CATTTGGTCATTTAGGGTCA+AGG | 0.537795 | 7_4:-55944936 | Msa1164310:CDS |
TTTGCGTCAGATATCGATGA+AGG | 0.539968 | 7_4:-55945214 | Msa1164310:CDS |
GGAGAAGATCAAAGGATACA+TGG | 0.546580 | 7_4:-55945668 | Msa1164310:CDS |
GGCTAGGATCATGCCCGTCA+TGG | 0.548604 | 7_4:-55942121 | Msa1164310:CDS |
ACCGTAATTCCATCCATGAC+GGG | 0.549235 | 7_4:+55942108 | None:intergenic |
ACAGAAATTTGCTATCACTA+AGG | 0.550411 | 7_4:-55945689 | Msa1164310:CDS |
GAAACCAAAGACCACGAAGA+AGG | 0.554191 | 7_4:-55945404 | Msa1164310:CDS |
TAATGTCAAGAACAAGATCA+AGG | 0.554858 | 7_4:-55945281 | Msa1164310:CDS |
TGGATTAAAAGTACTGGTTG+TGG | 0.556379 | 7_4:-55942280 | Msa1164310:CDS |
AACAAGATCAAGGAGTTGAA+TGG | 0.557360 | 7_4:-55945271 | Msa1164310:CDS |
TCTTCTTCAGAATAAAATTG+TGG | 0.559109 | 7_4:+55945574 | None:intergenic |
AAAGGAGACTTTAGATACAA+AGG | 0.565224 | 7_4:-55945131 | Msa1164310:CDS |
GCCAAGCAAAGTTATGGAGA+AGG | 0.574243 | 7_4:+55945620 | None:intergenic |
ATTCCACAAAACACAGTGGA+AGG | 0.576751 | 7_4:-55945499 | Msa1164310:CDS |
ACCAAAGACCACGAGGAAGG+TGG | 0.579088 | 7_4:-55945359 | Msa1164310:CDS |
ATGCAGAATTTCGCAATGCA+GGG | 0.581025 | 7_4:-55941796 | Msa1164310:CDS |
TGATCCTAGCCATGAGAATG+AGG | 0.586084 | 7_4:+55942133 | None:intergenic |
ATCACTAAGGAGAAGATCAA+AGG | 0.586998 | 7_4:-55945676 | Msa1164310:CDS |
TAAATTCGACCTCATTCTCA+TGG | 0.588335 | 7_4:-55942142 | Msa1164310:CDS |
TCGACCTCATTCTCATGGCT+AGG | 0.592585 | 7_4:-55942137 | Msa1164310:CDS |
AACCGTAATTCCATCCATGA+CGG | 0.593130 | 7_4:+55942107 | None:intergenic |
GACATGCTACCTTCATCACA+TGG | 0.593230 | 7_4:+55945445 | None:intergenic |
TTAATAGGTAATATTGGCGG+AGG | 0.598936 | 7_4:+55945301 | None:intergenic |
TACGTTCAACCGTGCCAATG+AGG | 0.601575 | 7_4:+55942163 | None:intergenic |
GAAACCAAAGACCACGAGGA+AGG | 0.602167 | 7_4:-55945362 | Msa1164310:CDS |
ACCAAAGACCACGAAGAAGG+TGG | 0.606619 | 7_4:-55945401 | Msa1164310:CDS |
AGCCTTAGACCTCATTGGCA+CGG | 0.608494 | 7_4:-55942172 | Msa1164310:CDS |
ACATTAATAGGTAATATTGG+CGG | 0.614565 | 7_4:+55945298 | None:intergenic |
TGGTTTAGAAGTGATTGTGT+TGG | 0.618872 | 7_4:-55945089 | Msa1164310:CDS |
AGATGATGATCTTGTTCGAA+TGG | 0.623757 | 7_4:-55942256 | Msa1164310:CDS |
TTCAACATATGATAGTGCAA+GGG | 0.630612 | 7_4:+55941743 | None:intergenic |
TTTCGGTTCCACCTTCCTCG+TGG | 0.635344 | 7_4:+55945351 | None:intergenic |
AATTGGAAACATGCTGTGAG+GGG | 0.651158 | 7_4:-55944989 | Msa1164310:CDS |
TGAAGGTAGCATGTCTTATG+CGG | 0.655262 | 7_4:-55945437 | Msa1164310:CDS |
AGACACCAACAATCTGGCCA+GGG | 0.657108 | 7_4:+55941843 | None:intergenic |
AAATACTGAAGCCATGACGA+AGG | 0.663599 | 7_4:-55945713 | Msa1164310:CDS |
AAAATTGGAAACATGCTGTG+AGG | 0.670199 | 7_4:-55944991 | Msa1164310:CDS |
AAGTTATGGAGAAGGTTGAG+TGG | 0.683312 | 7_4:+55945628 | None:intergenic |
GAACGAAACCAAAGACCACG+AGG | 0.685629 | 7_4:-55945366 | Msa1164310:CDS |
CTGCGCGATTTAGAATACCC+TGG | 0.695519 | 7_4:-55941860 | Msa1164310:CDS |
ACATGCTACCTTCATCACAT+GGG | 0.704522 | 7_4:+55945446 | None:intergenic |
AAATATTCCACAAAACACAG+TGG | 0.735384 | 7_4:-55945503 | Msa1164310:CDS |
TATCATCACAGAGTCCCGCG+TGG | 0.741838 | 7_4:-55942300 | Msa1164310:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTATCTATTATGTTT+TGG | - | chr7_4:55943661-55943680 | Msa1164310:intron | 10.0% |
!! | TGAAAAAAAAAAGTAAAAAA+AGG | + | chr7_4:55944553-55944572 | None:intergenic | 10.0% |
!!! | TTTTTCTTATCTTGTTTTTT+CGG | + | chr7_4:55942108-55942127 | None:intergenic | 15.0% |
!! | AAAACAAGATAAGAAAAATT+TGG | - | chr7_4:55942110-55942129 | Msa1164310:CDS | 15.0% |
!!! | TGTATGATTTTCTTTTTAAA+AGG | - | chr7_4:55943028-55943047 | Msa1164310:intron | 15.0% |
!! | TCAAAACTTATAGATTAAAA+AGG | + | chr7_4:55943466-55943485 | None:intergenic | 15.0% |
!!! | AAATTTGTCACAAATTTTAT+AGG | + | chr7_4:55943776-55943795 | None:intergenic | 15.0% |
!! | TTACAAATATTTCAAAATGA+AGG | + | chr7_4:55943872-55943891 | None:intergenic | 15.0% |
!!! | TTCATTTTGAAATATTTGTA+AGG | - | chr7_4:55943871-55943890 | Msa1164310:intron | 15.0% |
!! | ATTTATATCTAAGAATTAGA+GGG | + | chr7_4:55944702-55944721 | None:intergenic | 15.0% |
!! | TATTTATATCTAAGAATTAG+AGG | + | chr7_4:55944703-55944722 | None:intergenic | 15.0% |
!! | TTGACATTAATAGGTAATAT+TGG | + | chr7_4:55942147-55942166 | None:intergenic | 20.0% |
!! | TTAGATACAAAGGATAAAAA+CGG | - | chr7_4:55942318-55942337 | Msa1164310:intron | 20.0% |
!!! | TTTACAGTCTTATACAAAAT+TGG | - | chr7_4:55942433-55942452 | Msa1164310:intron | 20.0% |
!! | CTTTGTACTCAAAATTAATT+AGG | - | chr7_4:55942536-55942555 | Msa1164310:intron | 20.0% |
!! | ATATAGAAAAACAAATTCCT+AGG | + | chr7_4:55942680-55942699 | None:intergenic | 20.0% |
!! | TTGATAAAAAGACCAATATT+AGG | + | chr7_4:55942999-55943018 | None:intergenic | 20.0% |
!!! | ATTTATCTATTATGTTTTGG+TGG | - | chr7_4:55943664-55943683 | Msa1164310:intron | 20.0% |
!!! | TTTATCTATTATGTTTTGGT+GGG | - | chr7_4:55943665-55943684 | Msa1164310:intron | 20.0% |
!! | AATATTTCAAAATGAAGGTA+CGG | + | chr7_4:55943867-55943886 | None:intergenic | 20.0% |
!!! | TATTTTATGGACTAACAATT+TGG | - | chr7_4:55944427-55944446 | Msa1164310:intron | 20.0% |
!! | ATAGAAAATCAAGATTGAAA+AGG | + | chr7_4:55945068-55945087 | None:intergenic | 20.0% |
!! | TAATTACATACATACATACA+CGG | - | chr7_4:55945366-55945385 | Msa1164310:CDS | 20.0% |
!!! | ATTGCTTTAAACTAATTCAT+GGG | + | chr7_4:55945403-55945422 | None:intergenic | 20.0% |
!!! | AATTGCTTTAAACTAATTCA+TGG | + | chr7_4:55945404-55945423 | None:intergenic | 20.0% |
!! | ATTATGAATGATTATATGCT+AGG | + | chr7_4:55945508-55945527 | None:intergenic | 20.0% |
!!! | TGTTGAAACTAATTTTGAAA+AGG | - | chr7_4:55945712-55945731 | Msa1164310:CDS | 20.0% |
!!! | GTTGAAACTAATTTTGAAAA+GGG | - | chr7_4:55945713-55945732 | Msa1164310:CDS | 20.0% |
! | ATACATGGAAAAAGCAAAAA+CGG | - | chr7_4:55941786-55941805 | Msa1164310:CDS | 25.0% |
! | TCTTCTTCAGAATAAAATTG+TGG | + | chr7_4:55941868-55941887 | None:intergenic | 25.0% |
!!! | TTTGGTTTCGTTCTTTTATT+TGG | + | chr7_4:55942066-55942085 | None:intergenic | 25.0% |
! | ACATTAATAGGTAATATTGG+CGG | + | chr7_4:55942144-55942163 | None:intergenic | 25.0% |
! | ATCTTGTTCTTGACATTAAT+AGG | + | chr7_4:55942156-55942175 | None:intergenic | 25.0% |
!!! | TTGTGAAGCTTCTAAAATAA+GGG | + | chr7_4:55942377-55942396 | None:intergenic | 25.0% |
!!! | ATTGTGAAGCTTCTAAAATA+AGG | + | chr7_4:55942378-55942397 | None:intergenic | 25.0% |
!!! | CAAAACACCAAACTTTTTTA+AGG | - | chr7_4:55942842-55942861 | Msa1164310:intron | 25.0% |
! | GAAAGATCCTTAAAAAAGTT+TGG | + | chr7_4:55942852-55942871 | None:intergenic | 25.0% |
!! | GGACAAAATATTTTCTTACT+AGG | - | chr7_4:55942949-55942968 | Msa1164310:intron | 25.0% |
! | TTTCTCTTTATGCCTAATAT+TGG | - | chr7_4:55942984-55943003 | Msa1164310:intron | 25.0% |
! | TAGCAGGAAGAATTATTATA+TGG | - | chr7_4:55943310-55943329 | Msa1164310:intron | 25.0% |
!! | ATTATTTTCCTTGATCATGT+TGG | - | chr7_4:55943439-55943458 | Msa1164310:intron | 25.0% |
! | GTCTGTGATAAAATCATTTA+TGG | - | chr7_4:55943531-55943550 | Msa1164310:intron | 25.0% |
!! | TATTTGAAGTCTTAAACTAG+AGG | + | chr7_4:55944143-55944162 | None:intergenic | 25.0% |
! | ATAGAGCACAGTTTAAATTT+CGG | + | chr7_4:55944354-55944373 | None:intergenic | 25.0% |
!! | TTAGGAAAGTAAGAATTTTG+AGG | + | chr7_4:55944456-55944475 | None:intergenic | 25.0% |
! | ATTAGAGGGTAAATTTAGAT+AGG | + | chr7_4:55944688-55944707 | None:intergenic | 25.0% |
! | ATTACAAGATTTCAAGATGA+TGG | + | chr7_4:55944842-55944861 | None:intergenic | 25.0% |
! | GTATCAAGATAAAGATATAG+AGG | + | chr7_4:55944869-55944888 | None:intergenic | 25.0% |
! | ATCAAGATTGAAAAGGAAAA+TGG | + | chr7_4:55945061-55945080 | None:intergenic | 25.0% |
! | AAACAGAACTGTAGTAATTA+AGG | - | chr7_4:55945091-55945110 | Msa1164310:CDS | 25.0% |
!! | ACAGAAATTTGCTATCACTA+AGG | - | chr7_4:55941750-55941769 | Msa1164310:CDS | 30.0% |
!!! | GTGGAATATTTTGAGTTTCT+TGG | + | chr7_4:55941927-55941946 | None:intergenic | 30.0% |
AAATATTCCACAAAACACAG+TGG | - | chr7_4:55941936-55941955 | Msa1164310:intron | 30.0% | |
TAATGTCAAGAACAAGATCA+AGG | - | chr7_4:55942158-55942177 | Msa1164310:CDS | 30.0% | |
AAAGGAGACTTTAGATACAA+AGG | - | chr7_4:55942308-55942327 | Msa1164310:intron | 30.0% | |
AAAGGATAAAAACGGTAAAC+CGG | - | chr7_4:55942326-55942345 | Msa1164310:intron | 30.0% | |
TAGGTCAAAAACTCAACATT+TGG | - | chr7_4:55942487-55942506 | Msa1164310:intron | 30.0% | |
AACTCAACATTTGGTCATTT+AGG | - | chr7_4:55942496-55942515 | Msa1164310:intron | 30.0% | |
ACTCAACATTTGGTCATTTA+GGG | - | chr7_4:55942497-55942516 | Msa1164310:intron | 30.0% | |
TACTTCTCTGTATCAATGTA+TGG | - | chr7_4:55942782-55942801 | Msa1164310:intron | 30.0% | |
TTATAGCACACTCAATAAAC+AGG | + | chr7_4:55943136-55943155 | None:intergenic | 30.0% | |
! | TATGGTCTTCAATTTGCTTA+TGG | - | chr7_4:55943328-55943347 | Msa1164310:intron | 30.0% |
AAATAATGTAGAGTCACCTA+AGG | + | chr7_4:55943426-55943445 | None:intergenic | 30.0% | |
AACTTAGTCTCATACATTCA+AGG | + | chr7_4:55943608-55943627 | None:intergenic | 30.0% | |
AGTCTCAAAGATTACGAATT+TGG | + | chr7_4:55943740-55943759 | None:intergenic | 30.0% | |
! | TTGAGCTGATTCAATTTGAT+TGG | - | chr7_4:55943809-55943828 | Msa1164310:intron | 30.0% |
! | TAACCATTAGCTTAAATGCT+TGG | + | chr7_4:55943842-55943861 | None:intergenic | 30.0% |
ACATAATCAAAATCACAGCT+AGG | + | chr7_4:55943902-55943921 | None:intergenic | 30.0% | |
AAAACCTTGCATATGATAGA+AGG | + | chr7_4:55943940-55943959 | None:intergenic | 30.0% | |
! | AACAACTTACCTTTTTGTTG+CGG | + | chr7_4:55943991-55944010 | None:intergenic | 30.0% |
ACTTGTATACTCAATGTTGT+CGG | + | chr7_4:55944377-55944396 | None:intergenic | 30.0% | |
!!! | CAACTGTGTGACTTATTTTA+TGG | - | chr7_4:55944414-55944433 | Msa1164310:intron | 30.0% |
TTCCTAACTTCAAACTTAGT+TGG | - | chr7_4:55944469-55944488 | Msa1164310:intron | 30.0% | |
! | TACCAACTAAGTTTGAAGTT+AGG | + | chr7_4:55944474-55944493 | None:intergenic | 30.0% |
! | TTGAAGTTCCTCTATGATTT+TGG | - | chr7_4:55944511-55944530 | Msa1164310:intron | 30.0% |
AACTGTTTCCAAAATCATAG+AGG | + | chr7_4:55944522-55944541 | None:intergenic | 30.0% | |
!!! | AGTTAGTTGGTTATTTTGGT+TGG | + | chr7_4:55944588-55944607 | None:intergenic | 30.0% |
! | AGTCAGTTAGTTGGTTATTT+TGG | + | chr7_4:55944592-55944611 | None:intergenic | 30.0% |
AATAAAGTGAGTCAGTTAGT+TGG | + | chr7_4:55944601-55944620 | None:intergenic | 30.0% | |
! | GATAGGTAGAAATTGACTTT+GGG | + | chr7_4:55944671-55944690 | None:intergenic | 30.0% |
! | AGATAGGTAGAAATTGACTT+TGG | + | chr7_4:55944672-55944691 | None:intergenic | 30.0% |
AGAACAAACTCTTATTCTGT+GGG | + | chr7_4:55944794-55944813 | None:intergenic | 30.0% | |
CTGTAGTAATTAAGGCATAA+TGG | - | chr7_4:55945099-55945118 | Msa1164310:CDS | 30.0% | |
AGAGATATCTTGACATTACT+TGG | - | chr7_4:55945211-55945230 | Msa1164310:CDS | 30.0% | |
ATGAACAGAAAGAAAATGCA+TGG | - | chr7_4:55945466-55945485 | Msa1164310:CDS | 30.0% | |
TGAACAGAAAGAAAATGCAT+GGG | - | chr7_4:55945467-55945486 | Msa1164310:CDS | 30.0% | |
CTGCATATTCATCATTAGTA+AGG | + | chr7_4:55945629-55945648 | None:intergenic | 30.0% | |
! | TTCAACATATGATAGTGCAA+GGG | + | chr7_4:55945699-55945718 | None:intergenic | 30.0% |
! | TTTCAACATATGATAGTGCA+AGG | + | chr7_4:55945700-55945719 | None:intergenic | 30.0% |
AAATTTCTGTTCCTTCGTCA+TGG | + | chr7_4:55941740-55941759 | None:intergenic | 35.0% | |
ATCACTAAGGAGAAGATCAA+AGG | - | chr7_4:55941763-55941782 | Msa1164310:CDS | 35.0% | |
AAGTAGCGAATACCAAGAAA+AGG | - | chr7_4:55941965-55941984 | Msa1164310:intron | 35.0% | |
TTAATAGGTAATATTGGCGG+AGG | + | chr7_4:55942141-55942160 | None:intergenic | 35.0% | |
AACAAGATCAAGGAGTTGAA+TGG | - | chr7_4:55942168-55942187 | Msa1164310:CDS | 35.0% | |
! | GTGGCATTAAAAGACGATTT+TGG | + | chr7_4:55942251-55942270 | None:intergenic | 35.0% |
! | TTTTCTCACCAAGACAGAAA+AGG | - | chr7_4:55942290-55942309 | Msa1164310:CDS | 35.0% |
! | TAAAGTCTCCTTTTCTGTCT+TGG | + | chr7_4:55942301-55942320 | None:intergenic | 35.0% |
ACAATCACTTCTAAACCAAC+CGG | + | chr7_4:55942348-55942367 | None:intergenic | 35.0% | |
TGGTTTAGAAGTGATTGTGT+TGG | - | chr7_4:55942350-55942369 | Msa1164310:intron | 35.0% | |
AGTGGAGAATGACTGATAAA+TGG | - | chr7_4:55942409-55942428 | Msa1164310:intron | 35.0% | |
GTGGAGAATGACTGATAAAT+GGG | - | chr7_4:55942410-55942429 | Msa1164310:intron | 35.0% | |
AAAATTGGAAACATGCTGTG+AGG | - | chr7_4:55942448-55942467 | Msa1164310:intron | 35.0% | |
AAATTGGAAACATGCTGTGA+GGG | - | chr7_4:55942449-55942468 | Msa1164310:intron | 35.0% | |
!!! | AGGGGAAATGGTTTTGAAAT+AGG | - | chr7_4:55942468-55942487 | Msa1164310:intron | 35.0% |
! | GTACTTTGTTTATGCGTTTC+TGG | - | chr7_4:55942600-55942619 | Msa1164310:intron | 35.0% |
! | CAGTTTTTGCTCTCTTTCAT+TGG | - | chr7_4:55942704-55942723 | Msa1164310:intron | 35.0% |
! | TAAGGATCTTTCCTTTTGTG+AGG | - | chr7_4:55942860-55942879 | Msa1164310:intron | 35.0% |
ATGCAATCAAACCTCACAAA+AGG | + | chr7_4:55942874-55942893 | None:intergenic | 35.0% | |
ATCAGTTCAGAATCTTTACC+TGG | - | chr7_4:55942906-55942925 | Msa1164310:intron | 35.0% | |
TAGTATGTGTCAAGTTCTGT+TGG | - | chr7_4:55943082-55943101 | Msa1164310:intron | 35.0% | |
AATCTCCAGTTTCATATGCA+GGG | - | chr7_4:55943262-55943281 | Msa1164310:intron | 35.0% | |
! | GACAACTTGTTCTAAGTAGT+TGG | - | chr7_4:55943350-55943369 | Msa1164310:intron | 35.0% |
CAATTTGACTATGACACCTT+AGG | - | chr7_4:55943407-55943426 | Msa1164310:intron | 35.0% | |
AAAAAGGACCAACATGATCA+AGG | + | chr7_4:55943450-55943469 | None:intergenic | 35.0% | |
! | TTTTCTCAAAACATTCGCAG+TGG | - | chr7_4:55943556-55943575 | Msa1164310:intron | 35.0% |
AGTCTCATACATTCAAGGAT+GGG | + | chr7_4:55943603-55943622 | None:intergenic | 35.0% | |
TAGTCTCATACATTCAAGGA+TGG | + | chr7_4:55943604-55943623 | None:intergenic | 35.0% | |
TTTGGTGGGATATAAGTGTT+TGG | - | chr7_4:55943679-55943698 | Msa1164310:intron | 35.0% | |
! | CATTGACACAAAGACGATTT+TGG | + | chr7_4:55943710-55943729 | None:intergenic | 35.0% |
ATCGTCTTTGTGTCAATGTT+AGG | - | chr7_4:55943712-55943731 | Msa1164310:intron | 35.0% | |
TCGTCTTTGTGTCAATGTTA+GGG | - | chr7_4:55943713-55943732 | Msa1164310:intron | 35.0% | |
TTGCCAAGCATTTAAGCTAA+TGG | - | chr7_4:55943836-55943855 | Msa1164310:intron | 35.0% | |
ATGATAGAAGGAACATGGAA+TGG | + | chr7_4:55943928-55943947 | None:intergenic | 35.0% | |
TGCATATGATAGAAGGAACA+TGG | + | chr7_4:55943933-55943952 | None:intergenic | 35.0% | |
TGTTCCTTCTATCATATGCA+AGG | - | chr7_4:55943933-55943952 | Msa1164310:intron | 35.0% | |
! | TTTTGTTGCGGCATTTTTCT+CGG | + | chr7_4:55943979-55943998 | None:intergenic | 35.0% |
AGAAAAATGCCGCAACAAAA+AGG | - | chr7_4:55943979-55943998 | Msa1164310:intron | 35.0% | |
AAACTAGAGGAAGAGTCTAA+AGG | + | chr7_4:55944130-55944149 | None:intergenic | 35.0% | |
GAGAACAAACTCTTATTCTG+TGG | + | chr7_4:55944795-55944814 | None:intergenic | 35.0% | |
! | ATAAGAGTTTGTTCTCCACA+AGG | - | chr7_4:55944799-55944818 | Msa1164310:intron | 35.0% |
GAAAGAACTCTTGATTACGT+GGG | + | chr7_4:55944963-55944982 | None:intergenic | 35.0% | |
AGAAAGAACTCTTGATTACG+TGG | + | chr7_4:55944964-55944983 | None:intergenic | 35.0% | |
!! | TGGATTAAAAGTACTGGTTG+TGG | - | chr7_4:55945159-55945178 | Msa1164310:CDS | 35.0% |
AGATGATGATCTTGTTCGAA+TGG | - | chr7_4:55945183-55945202 | Msa1164310:CDS | 35.0% | |
! | TATCTTGACATTACTTGGTG+TGG | - | chr7_4:55945216-55945235 | Msa1164310:CDS | 35.0% |
TAAATTCGACCTCATTCTCA+TGG | - | chr7_4:55945297-55945316 | Msa1164310:CDS | 35.0% | |
GAACAGAAAGAAAATGCATG+GGG | - | chr7_4:55945468-55945487 | Msa1164310:CDS | 35.0% | |
GATGATCTACATCATGAAGA+TGG | - | chr7_4:55945669-55945688 | Msa1164310:CDS | 35.0% | |
AAATACTGAAGCCATGACGA+AGG | - | chr7_4:55941726-55941745 | Msa1164310:CDS | 40.0% | |
GGAGAAGATCAAAGGATACA+TGG | - | chr7_4:55941771-55941790 | Msa1164310:CDS | 40.0% | |
AAGTTATGGAGAAGGTTGAG+TGG | + | chr7_4:55941814-55941833 | None:intergenic | 40.0% | |
ACCTTCTCCATAACTTTGCT+TGG | - | chr7_4:55941818-55941837 | Msa1164310:CDS | 40.0% | |
ATTCCACAAAACACAGTGGA+AGG | - | chr7_4:55941940-55941959 | Msa1164310:intron | 40.0% | |
ACATGCTACCTTCATCACAT+GGG | + | chr7_4:55941996-55942015 | None:intergenic | 40.0% | |
TGAAGGTAGCATGTCTTATG+CGG | - | chr7_4:55942002-55942021 | Msa1164310:intron | 40.0% | |
TTTGCGTCAGATATCGATGA+AGG | - | chr7_4:55942225-55942244 | Msa1164310:CDS | 40.0% | |
CCAAGTTCGTCTTCTTTAAG+TGG | + | chr7_4:55942270-55942289 | None:intergenic | 40.0% | |
CCACTTAAAGAAGACGAACT+TGG | - | chr7_4:55942267-55942286 | Msa1164310:CDS | 40.0% | |
GATAAAAACGGTAAACCGGT+TGG | - | chr7_4:55942330-55942349 | Msa1164310:intron | 40.0% | |
TCACAATGTGCTTCAAGAAG+TGG | - | chr7_4:55942391-55942410 | Msa1164310:intron | 40.0% | |
AATTGGAAACATGCTGTGAG+GGG | - | chr7_4:55942450-55942469 | Msa1164310:intron | 40.0% | |
! | CATTTGGTCATTTAGGGTCA+AGG | - | chr7_4:55942503-55942522 | Msa1164310:intron | 40.0% |
!! | TGTTTATGCGTTTCTGGCTT+TGG | - | chr7_4:55942606-55942625 | Msa1164310:intron | 40.0% |
! | AGTCTAGAACTTGTGTTACC+AGG | + | chr7_4:55942927-55942946 | None:intergenic | 40.0% |
!! | GTAACACAAGTTCTAGACTC+TGG | - | chr7_4:55942928-55942947 | Msa1164310:intron | 40.0% |
AGCACACTCAATAAACAGGA+TGG | + | chr7_4:55943132-55943151 | None:intergenic | 40.0% | |
GATTCTCTTGCAACTACTTC+AGG | + | chr7_4:55943246-55943265 | None:intergenic | 40.0% | |
GAATCTCCAGTTTCATATGC+AGG | - | chr7_4:55943261-55943280 | Msa1164310:intron | 40.0% | |
ATCTCCAGTTTCATATGCAG+GGG | - | chr7_4:55943263-55943282 | Msa1164310:intron | 40.0% | |
ACTATTGAAGTTGCTGCTAG+TGG | + | chr7_4:55943291-55943310 | None:intergenic | 40.0% | |
TCATACATTCAAGGATGGGA+AGG | + | chr7_4:55943599-55943618 | None:intergenic | 40.0% | |
! | TGACACAAAGACGATTTTGG+TGG | + | chr7_4:55943707-55943726 | None:intergenic | 40.0% |
! | CATTTTTCTCGGTAATTGGC+TGG | + | chr7_4:55943968-55943987 | None:intergenic | 40.0% |
GCTGTAAAAATGGGGGAAAA+CGG | + | chr7_4:55944015-55944034 | None:intergenic | 40.0% | |
TTTCGTCGCGCTGTAAAAAT+GGG | + | chr7_4:55944024-55944043 | None:intergenic | 40.0% | |
ATTTCGTCGCGCTGTAAAAA+TGG | + | chr7_4:55944025-55944044 | None:intergenic | 40.0% | |
! | CGAAATTTTATACGCGATCG+CGG | - | chr7_4:55944316-55944335 | Msa1164310:intron | 40.0% |
TTAAATTTCGGTCCCAGTCA+AGG | + | chr7_4:55944342-55944361 | None:intergenic | 40.0% | |
GAGTTCTTTCTTTCTCCACA+AGG | - | chr7_4:55944973-55944992 | Msa1164310:CDS | 40.0% | |
! | ACCAGTACTTTTAATCCACG+CGG | + | chr7_4:55945157-55945176 | None:intergenic | 40.0% |
GAAACTCACGCAGTCAAAAA+TGG | - | chr7_4:55945238-55945257 | Msa1164310:CDS | 40.0% | |
AAAGAAGCCTTAGACCTCAT+TGG | - | chr7_4:55945262-55945281 | Msa1164310:CDS | 40.0% | |
AACCGTAATTCCATCCATGA+CGG | + | chr7_4:55945335-55945354 | None:intergenic | 40.0% | |
TATGCAGAATTTCGCAATGC+AGG | - | chr7_4:55945642-55945661 | Msa1164310:CDS | 40.0% | |
ATGCAGAATTTCGCAATGCA+GGG | - | chr7_4:55945643-55945662 | Msa1164310:CDS | 40.0% | |
GCCAAGCAAAGTTATGGAGA+AGG | + | chr7_4:55941822-55941841 | None:intergenic | 45.0% | |
CGCATTGCCAAGCAAAGTTA+TGG | + | chr7_4:55941828-55941847 | None:intergenic | 45.0% | |
! | TCTCCTTCCACTGTGTTTTG+TGG | + | chr7_4:55941946-55941965 | None:intergenic | 45.0% |
! | ACATGGGTGACACCTTTTCT+TGG | + | chr7_4:55941980-55941999 | None:intergenic | 45.0% |
GACATGCTACCTTCATCACA+TGG | + | chr7_4:55941997-55942016 | None:intergenic | 45.0% | |
GAAACCAAAGACCACGAAGA+AGG | - | chr7_4:55942035-55942054 | Msa1164310:intron | 45.0% | |
! | ATTTGGTTCCACCTTCTTCG+TGG | + | chr7_4:55942049-55942068 | None:intergenic | 45.0% |
AAACATGCTGTGAGGGGAAA+TGG | - | chr7_4:55942456-55942475 | Msa1164310:intron | 45.0% | |
!!! | TGCGTTTCTGGCTTTGGTTT+TGG | - | chr7_4:55942612-55942631 | Msa1164310:intron | 45.0% |
CTACTACAGCACATGAACAG+GGG | + | chr7_4:55942645-55942664 | None:intergenic | 45.0% | |
GCTACTACAGCACATGAACA+GGG | + | chr7_4:55942646-55942665 | None:intergenic | 45.0% | |
TGCTACTACAGCACATGAAC+AGG | + | chr7_4:55942647-55942666 | None:intergenic | 45.0% | |
TGTGCTGTAGTAGCATGAGA+AGG | - | chr7_4:55942652-55942671 | Msa1164310:intron | 45.0% | |
AGTAGCATGAGAAGGAACCT+AGG | - | chr7_4:55942660-55942679 | Msa1164310:intron | 45.0% | |
GCAGCAACTTCAATAGTAGC+AGG | - | chr7_4:55943294-55943313 | Msa1164310:intron | 45.0% | |
ATGGGAAGGCTAAAGCTCAT+AGG | + | chr7_4:55943585-55943604 | None:intergenic | 45.0% | |
! | GCGGCATTTTTCTCGGTAAT+TGG | + | chr7_4:55943972-55943991 | None:intergenic | 45.0% |
TTCGTCGCGCTGTAAAAATG+GGG | + | chr7_4:55944023-55944042 | None:intergenic | 45.0% | |
AGCGCGACGAAATATCGTTA+TGG | - | chr7_4:55944032-55944051 | Msa1164310:intron | 45.0% | |
GCGCGACGAAATATCGTTAT+GGG | - | chr7_4:55944033-55944052 | Msa1164310:intron | 45.0% | |
ATGCAGTTGTACTTGCCTTG+TGG | + | chr7_4:55944817-55944836 | None:intergenic | 45.0% | |
! | CCAGTACTTTTAATCCACGC+GGG | + | chr7_4:55945156-55945175 | None:intergenic | 45.0% |
TGATCCTAGCCATGAGAATG+AGG | + | chr7_4:55945309-55945328 | None:intergenic | 45.0% | |
ACCGTAATTCCATCCATGAC+GGG | + | chr7_4:55945334-55945353 | None:intergenic | 45.0% | |
GTCATGGATGGAATTACGGT+TGG | - | chr7_4:55945334-55945353 | Msa1164310:CDS | 45.0% | |
CATTCATATGTGTGCACTGC+AGG | - | chr7_4:55945545-55945564 | Msa1164310:CDS | 45.0% | |
! | AGGTGTCACCCATGTGATGA+AGG | - | chr7_4:55941985-55942004 | Msa1164310:intron | 50.0% |
ACCAAAGACCACGAAGAAGG+TGG | - | chr7_4:55942038-55942057 | Msa1164310:intron | 50.0% | |
TCCACCTTCTTCGTGGTCTT+TGG | + | chr7_4:55942042-55942061 | None:intergenic | 50.0% | |
GAACGAAACCAAAGACCACG+AGG | - | chr7_4:55942031-55942050 | Msa1164310:intron | 50.0% | |
GAAACCAAAGACCACGAGGA+AGG | - | chr7_4:55942077-55942096 | Msa1164310:intron | 50.0% | |
TCGTCGCGCTGTAAAAATGG+GGG | + | chr7_4:55944022-55944041 | None:intergenic | 50.0% | |
GTCGCAGATTTCGCGATTTC+AGG | + | chr7_4:55944255-55944274 | None:intergenic | 50.0% | |
TTGCAGTAGCACTTGCCTTG+TGG | + | chr7_4:55944991-55945010 | None:intergenic | 50.0% | |
GGGACTCTGTGATGATATGG+AGG | + | chr7_4:55945136-55945155 | None:intergenic | 50.0% | |
! | CCCGCGTGGATTAAAAGTAC+TGG | - | chr7_4:55945153-55945172 | Msa1164310:CDS | 50.0% |
AGCCTTAGACCTCATTGGCA+CGG | - | chr7_4:55945267-55945286 | Msa1164310:CDS | 50.0% | |
AACCGTGCCAATGAGGTCTA+AGG | + | chr7_4:55945272-55945291 | None:intergenic | 50.0% | |
TACGTTCAACCGTGCCAATG+AGG | + | chr7_4:55945279-55945298 | None:intergenic | 50.0% | |
TCGACCTCATTCTCATGGCT+AGG | - | chr7_4:55945302-55945321 | Msa1164310:CDS | 50.0% | |
GCCCGTCATGGATGGAATTA+CGG | - | chr7_4:55945330-55945349 | Msa1164310:CDS | 50.0% | |
! | CTGCGCGATTTAGAATACCC+TGG | - | chr7_4:55945579-55945598 | Msa1164310:CDS | 50.0% |
GAATACCCTGGCCAGATTGT+TGG | - | chr7_4:55945591-55945610 | Msa1164310:CDS | 50.0% | |
AGACACCAACAATCTGGCCA+GGG | + | chr7_4:55945599-55945618 | None:intergenic | 50.0% | |
GACGTGAGACACCAACAATC+TGG | + | chr7_4:55945605-55945624 | None:intergenic | 50.0% | |
ACCAAAGACCACGAGGAAGG+TGG | - | chr7_4:55942080-55942099 | Msa1164310:intron | 55.0% | |
TCCACCTTCCTCGTGGTCTT+TGG | + | chr7_4:55942084-55942103 | None:intergenic | 55.0% | |
TTTCGGTTCCACCTTCCTCG+TGG | + | chr7_4:55942091-55942110 | None:intergenic | 55.0% | |
GGCACCCCTGCATATGAAAC+TGG | + | chr7_4:55943270-55943289 | None:intergenic | 55.0% | |
CGCGGGACTCTGTGATGATA+TGG | + | chr7_4:55945139-55945158 | None:intergenic | 55.0% | |
TATCATCACAGAGTCCCGCG+TGG | - | chr7_4:55945139-55945158 | Msa1164310:CDS | 55.0% | |
AGGATCATGCCCGTCATGGA+TGG | - | chr7_4:55945322-55945341 | Msa1164310:CDS | 55.0% | |
GAGACACCAACAATCTGGCC+AGG | + | chr7_4:55945600-55945619 | None:intergenic | 55.0% | |
GGCTAGGATCATGCCCGTCA+TGG | - | chr7_4:55945318-55945337 | Msa1164310:CDS | 60.0% | |
TACGCGATCGCGGCCTTGAC+TGG | - | chr7_4:55944326-55944345 | Msa1164310:intron | 65.0% | |
ACGCGATCGCGGCCTTGACT+GGG | - | chr7_4:55944327-55944346 | Msa1164310:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 55941709 | 55945752 | 55941709 | ID=Msa1164310;Name=Msa1164310 |
chr7_4 | mRNA | 55941709 | 55945752 | 55941709 | ID=Msa1164310-mRNA-1;Parent=Msa1164310;Name=Msa1164310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|402 |
chr7_4 | exon | 55944932 | 55945752 | 55944932 | ID=Msa1164310-mRNA-1:exon:16462;Parent=Msa1164310-mRNA-1 |
chr7_4 | exon | 55942110 | 55942311 | 55942110 | ID=Msa1164310-mRNA-1:exon:16461;Parent=Msa1164310-mRNA-1 |
chr7_4 | exon | 55941709 | 55941894 | 55941709 | ID=Msa1164310-mRNA-1:exon:16460;Parent=Msa1164310-mRNA-1 |
chr7_4 | CDS | 55944932 | 55945752 | 55944932 | ID=Msa1164310-mRNA-1:cds;Parent=Msa1164310-mRNA-1 |
chr7_4 | CDS | 55942110 | 55942311 | 55942110 | ID=Msa1164310-mRNA-1:cds;Parent=Msa1164310-mRNA-1 |
chr7_4 | CDS | 55941709 | 55941894 | 55941709 | ID=Msa1164310-mRNA-1:cds;Parent=Msa1164310-mRNA-1 |
Gene Sequence |
Protein sequence |