Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164380 | RHN48301.1 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164380 | sp|Q9LSF7|Y3518_ARATH | 27.599 | 279 | 150 | 8 | 21 | 270 | 70 | 325 | 1.02e-16 | 84.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164380 | A0A396H6Z6 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Gene ID | Type | Classification |
---|---|---|
Msa1164380 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164380 | MtrunA17_Chr7g0262311 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Msa1164380 | MtrunA17_Chr5g0395781 | 50.352 | 284 | 115 | 7 | 1 | 275 | 1 | 267 | 7.88e-84 | 257 |
Msa1164380 | MtrunA17_Chr5g0395751 | 57.940 | 233 | 64 | 4 | 16 | 234 | 6 | 218 | 1.21e-69 | 219 |
Msa1164380 | MtrunA17_Chr5g0395741 | 53.365 | 208 | 74 | 4 | 71 | 275 | 118 | 305 | 2.43e-54 | 182 |
Msa1164380 | MtrunA17_Chr3g0097201 | 58.857 | 175 | 57 | 2 | 102 | 275 | 1 | 161 | 1.07e-52 | 173 |
Msa1164380 | MtrunA17_Chr3g0097211 | 67.816 | 87 | 25 | 1 | 6 | 89 | 2 | 88 | 6.32e-30 | 113 |
Msa1164380 | MtrunA17_Chr4g0033741 | 38.095 | 189 | 90 | 7 | 35 | 222 | 10 | 172 | 1.19e-23 | 96.7 |
Msa1164380 | MtrunA17_Chr5g0444241 | 37.584 | 149 | 88 | 3 | 129 | 272 | 186 | 334 | 3.66e-23 | 99.4 |
Msa1164380 | MtrunA17_Chr7g0262351 | 47.500 | 120 | 58 | 3 | 279 | 398 | 22 | 136 | 4.64e-23 | 94.0 |
Msa1164380 | MtrunA17_Chr8g0364781 | 45.545 | 101 | 52 | 2 | 279 | 377 | 12 | 111 | 2.59e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1164380 | AT5G26594.1 | 39.167 | 120 | 69 | 2 | 279 | 398 | 18 | 133 | 5.74e-17 | 77.8 |
Msa1164380 | AT3G04280.1 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1164380 | AT3G04280.2 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1164380 | AT3G04280.3 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1164380 | AT3G24850.1 | 30.556 | 180 | 102 | 6 | 115 | 285 | 183 | 348 | 2.90e-13 | 70.9 |
Msa1164380 | AT2G31720.1 | 32.099 | 162 | 104 | 3 | 156 | 314 | 137 | 295 | 7.03e-13 | 69.3 |
Msa1164380 | AT1G05920.1 | 31.746 | 126 | 78 | 4 | 156 | 273 | 171 | 296 | 1.52e-11 | 65.5 |
Msa1164380 | AT5G24050.1 | 25.610 | 246 | 158 | 6 | 35 | 271 | 100 | 329 | 3.45e-11 | 64.7 |
Find 82 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTCAACATTTGGTCATTT+AGG | 0.092697 | 7_4:-56027514 | Msa1164380:CDS |
TTTACAGTCTTATACAAAAT+TGG | 0.190742 | 7_4:-56027577 | Msa1164380:CDS |
GTGGCATTAAAAGACGATTT+TGG | 0.230260 | 7_4:+56027762 | None:intergenic |
AGTGGAGAATGACTGATAAA+TGG | 0.236879 | 7_4:-56027601 | Msa1164380:CDS |
TCCACCTTCTTCGTGGTCTT+TGG | 0.253725 | 7_4:+56027971 | None:intergenic |
ACTCAACATTTGGTCATTTA+GGG | 0.255771 | 7_4:-56027513 | Msa1164380:CDS |
TCCACCTTCCTCGTGGTCTT+TGG | 0.286800 | 7_4:+56027929 | None:intergenic |
ATCTTGTTCTTGACATTAAT+AGG | 0.287639 | 7_4:+56027857 | None:intergenic |
ATTGTGAAGCTTCTAAAATA+AGG | 0.305880 | 7_4:+56027635 | None:intergenic |
TTGACATTAATAGGTAATAT+TGG | 0.338094 | 7_4:+56027866 | None:intergenic |
CCAAGTTCGTCTTCTTTAAG+TGG | 0.388473 | 7_4:+56027743 | None:intergenic |
CGCATTGCCAAGCAAAGTTA+TGG | 0.391834 | 7_4:+56028185 | None:intergenic |
GCCCGTCATGGATGGAATTA+CGG | 0.406314 | 7_4:-56024675 | Msa1164380:intron |
CTGCATATTCATCATTAGTA+AGG | 0.410681 | 7_4:+56024379 | None:intergenic |
GTGGAGAATGACTGATAAAT+GGG | 0.417628 | 7_4:-56027600 | Msa1164380:CDS |
ACCTTCTCCATAACTTTGCT+TGG | 0.420476 | 7_4:-56028192 | Msa1164380:CDS |
AGAGATATCTTGACATTACT+TGG | 0.437895 | 7_4:-56024794 | Msa1164380:CDS |
CCACTTAAAGAAGACGAACT+TGG | 0.439642 | 7_4:-56027743 | Msa1164380:CDS |
GAATACCCTGGCCAGATTGT+TGG | 0.444431 | 7_4:-56024414 | Msa1164380:CDS |
TTGTGAAGCTTCTAAAATAA+GGG | 0.449884 | 7_4:+56027636 | None:intergenic |
AACCGTGCCAATGAGGTCTA+AGG | 0.458884 | 7_4:+56024736 | None:intergenic |
TATGCAGAATTTCGCAATGC+AGG | 0.461823 | 7_4:-56024363 | Msa1164380:CDS |
AAACATGCTGTGAGGGGAAA+TGG | 0.465819 | 7_4:-56027554 | Msa1164380:CDS |
ACAATCACTTCTAAACCAAC+CGG | 0.487692 | 7_4:+56027665 | None:intergenic |
GACGTGAGACACCAACAATC+TGG | 0.490889 | 7_4:+56024403 | None:intergenic |
GATGATCTACATCATGAAGA+TGG | 0.493143 | 7_4:-56024336 | Msa1164380:CDS |
ATTTGGTTCCACCTTCTTCG+TGG | 0.495745 | 7_4:+56027964 | None:intergenic |
CCCGCGTGGATTAAAAGTAC+TGG | 0.511605 | 7_4:-56024852 | Msa1164380:CDS |
GAGACACCAACAATCTGGCC+AGG | 0.513873 | 7_4:+56024408 | None:intergenic |
AAAGAAGCCTTAGACCTCAT+TGG | 0.516268 | 7_4:-56024743 | Msa1164380:CDS |
TCACAATGTGCTTCAAGAAG+TGG | 0.523622 | 7_4:-56027619 | Msa1164380:CDS |
AGGATCATGCCCGTCATGGA+TGG | 0.527719 | 7_4:-56024683 | Msa1164380:CDS |
AAATTTCTGTTCCTTCGTCA+TGG | 0.529500 | 7_4:+56028273 | None:intergenic |
TATCTTGACATTACTTGGTG+TGG | 0.530817 | 7_4:-56024789 | Msa1164380:CDS |
AAATTGGAAACATGCTGTGA+GGG | 0.531590 | 7_4:-56027561 | Msa1164380:CDS |
TTTCAACATATGATAGTGCA+AGG | 0.532595 | 7_4:+56024308 | None:intergenic |
AAAAGGTCATGCTAGTTGAC+AGG | 0.534345 | 7_4:+56024264 | None:intergenic |
AGGTGTCACCCATGTGATGA+AGG | 0.535873 | 7_4:-56028025 | Msa1164380:CDS |
AAGTAGCGAATACCAAGAAA+AGG | 0.536745 | 7_4:-56028045 | Msa1164380:CDS |
CATTTGGTCATTTAGGGTCA+AGG | 0.537795 | 7_4:-56027507 | Msa1164380:CDS |
TTTGCGTCAGATATCGATGA+AGG | 0.539968 | 7_4:-56027785 | Msa1164380:CDS |
GGAGAAGATCAAAGGATACA+TGG | 0.546580 | 7_4:-56028239 | Msa1164380:CDS |
GGCTAGGATCATGCCCGTCA+TGG | 0.548604 | 7_4:-56024687 | Msa1164380:CDS |
ACCGTAATTCCATCCATGAC+GGG | 0.549235 | 7_4:+56024674 | None:intergenic |
ACAGAAATTTGCTATCACTA+AGG | 0.550411 | 7_4:-56028260 | Msa1164380:CDS |
GAAACCAAAGACCACGAAGA+AGG | 0.554191 | 7_4:-56027975 | Msa1164380:CDS |
TAATGTCAAGAACAAGATCA+AGG | 0.554858 | 7_4:-56027852 | Msa1164380:CDS |
TGGATTAAAAGTACTGGTTG+TGG | 0.556379 | 7_4:-56024846 | Msa1164380:CDS |
AACAAGATCAAGGAGTTGAA+TGG | 0.557360 | 7_4:-56027842 | Msa1164380:CDS |
TCTTCTTCAGAATAAAATTG+TGG | 0.559109 | 7_4:+56028145 | None:intergenic |
AAAGGAGACTTTAGATACAA+AGG | 0.565224 | 7_4:-56027702 | Msa1164380:CDS |
GCCAAGCAAAGTTATGGAGA+AGG | 0.574243 | 7_4:+56028191 | None:intergenic |
ATTCCACAAAACACAGTGGA+AGG | 0.576751 | 7_4:-56028070 | Msa1164380:CDS |
ACCAAAGACCACGAGGAAGG+TGG | 0.579088 | 7_4:-56027930 | Msa1164380:CDS |
ATGCAGAATTTCGCAATGCA+GGG | 0.581025 | 7_4:-56024362 | Msa1164380:CDS |
TGATCCTAGCCATGAGAATG+AGG | 0.586084 | 7_4:+56024699 | None:intergenic |
ATCACTAAGGAGAAGATCAA+AGG | 0.586998 | 7_4:-56028247 | Msa1164380:CDS |
TAAATTCGACCTCATTCTCA+TGG | 0.588335 | 7_4:-56024708 | Msa1164380:CDS |
TCGACCTCATTCTCATGGCT+AGG | 0.592585 | 7_4:-56024703 | Msa1164380:CDS |
AACCGTAATTCCATCCATGA+CGG | 0.593130 | 7_4:+56024673 | None:intergenic |
GACATGCTACCTTCATCACA+TGG | 0.593230 | 7_4:+56028016 | None:intergenic |
TTAATAGGTAATATTGGCGG+AGG | 0.598936 | 7_4:+56027872 | None:intergenic |
TACGTTCAACCGTGCCAATG+AGG | 0.601575 | 7_4:+56024729 | None:intergenic |
GAAACCAAAGACCACGAGGA+AGG | 0.602167 | 7_4:-56027933 | Msa1164380:CDS |
ACCAAAGACCACGAAGAAGG+TGG | 0.606619 | 7_4:-56027972 | Msa1164380:CDS |
AGCCTTAGACCTCATTGGCA+CGG | 0.608494 | 7_4:-56024738 | Msa1164380:CDS |
ACATTAATAGGTAATATTGG+CGG | 0.614565 | 7_4:+56027869 | None:intergenic |
TGGTTTAGAAGTGATTGTGT+TGG | 0.618872 | 7_4:-56027660 | Msa1164380:CDS |
AGATGATGATCTTGTTCGAA+TGG | 0.623757 | 7_4:-56024822 | Msa1164380:CDS |
TTCAACATATGATAGTGCAA+GGG | 0.630612 | 7_4:+56024309 | None:intergenic |
TTTCGGTTCCACCTTCCTCG+TGG | 0.635344 | 7_4:+56027922 | None:intergenic |
AATTGGAAACATGCTGTGAG+GGG | 0.651158 | 7_4:-56027560 | Msa1164380:CDS |
TGAAGGTAGCATGTCTTATG+CGG | 0.655262 | 7_4:-56028008 | Msa1164380:CDS |
AGACACCAACAATCTGGCCA+GGG | 0.657108 | 7_4:+56024409 | None:intergenic |
AAATACTGAAGCCATGACGA+AGG | 0.663599 | 7_4:-56028284 | Msa1164380:CDS |
AAAATTGGAAACATGCTGTG+AGG | 0.670199 | 7_4:-56027562 | Msa1164380:CDS |
AAGTTATGGAGAAGGTTGAG+TGG | 0.683312 | 7_4:+56028199 | None:intergenic |
GAACGAAACCAAAGACCACG+AGG | 0.685629 | 7_4:-56027937 | Msa1164380:CDS |
CTGCGCGATTTAGAATACCC+TGG | 0.695519 | 7_4:-56024426 | Msa1164380:CDS |
ACATGCTACCTTCATCACAT+GGG | 0.704522 | 7_4:+56028017 | None:intergenic |
AAATATTCCACAAAACACAG+TGG | 0.735384 | 7_4:-56028074 | Msa1164380:CDS |
TATCATCACAGAGTCCCGCG+TGG | 0.741838 | 7_4:-56024866 | Msa1164380:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTATCTATTATGTTT+TGG | - | chr7_4:56026227-56026246 | Msa1164380:intron | 10.0% |
!! | TGAAAAAAAAAAGTAAAAAA+AGG | + | chr7_4:56027124-56027143 | None:intergenic | 10.0% |
!!! | TTTTTCTTATCTTGTTTTTT+CGG | + | chr7_4:56024674-56024693 | None:intergenic | 15.0% |
!! | AAAACAAGATAAGAAAAATT+TGG | - | chr7_4:56024676-56024695 | Msa1164380:CDS | 15.0% |
!!! | TGTATGATTTTCTTTTTAAA+AGG | - | chr7_4:56025594-56025613 | Msa1164380:intron | 15.0% |
!! | TCAAAACTTATAGATTAAAA+AGG | + | chr7_4:56026032-56026051 | None:intergenic | 15.0% |
!!! | AAATTTGTCACAAATTTTAT+GGG | + | chr7_4:56026342-56026361 | None:intergenic | 15.0% |
!!! | AAAATTTGTCACAAATTTTA+TGG | + | chr7_4:56026343-56026362 | None:intergenic | 15.0% |
!! | TTACAAATATTTCAAAATGA+AGG | + | chr7_4:56026438-56026457 | None:intergenic | 15.0% |
!!! | TTCATTTTGAAATATTTGTA+AGG | - | chr7_4:56026437-56026456 | Msa1164380:intron | 15.0% |
!! | ATTTATATCTAAGAATTAGA+GGG | + | chr7_4:56027273-56027292 | None:intergenic | 15.0% |
!! | TATTTATATCTAAGAATTAG+AGG | + | chr7_4:56027274-56027293 | None:intergenic | 15.0% |
!! | TTGACATTAATAGGTAATAT+TGG | + | chr7_4:56024713-56024732 | None:intergenic | 20.0% |
!! | TTAGATACAAAGGATAAAAA+CGG | - | chr7_4:56024884-56024903 | Msa1164380:intron | 20.0% |
!!! | TTTACAGTCTTATACAAAAT+TGG | - | chr7_4:56024999-56025018 | Msa1164380:intron | 20.0% |
!! | CTTTGTACTCAAAATTAATT+AGG | - | chr7_4:56025102-56025121 | Msa1164380:intron | 20.0% |
!! | ATATAGAAAAACAAATTCCT+AGG | + | chr7_4:56025246-56025265 | None:intergenic | 20.0% |
!! | TTGATAAAAAGACCAATATT+AGG | + | chr7_4:56025565-56025584 | None:intergenic | 20.0% |
!!! | ATTTATCTATTATGTTTTGG+TGG | - | chr7_4:56026230-56026249 | Msa1164380:intron | 20.0% |
!!! | TTTATCTATTATGTTTTGGT+GGG | - | chr7_4:56026231-56026250 | Msa1164380:intron | 20.0% |
!! | AATATTTCAAAATGAAGGTA+CGG | + | chr7_4:56026433-56026452 | None:intergenic | 20.0% |
!!! | TATTTTATGGACTAACAATT+TGG | - | chr7_4:56026998-56027017 | Msa1164380:intron | 20.0% |
!! | ATAGAAAATCAAGATTGAAA+AGG | + | chr7_4:56027639-56027658 | None:intergenic | 20.0% |
!! | TAATTACATACATACATACA+CGG | - | chr7_4:56027937-56027956 | Msa1164380:CDS | 20.0% |
!!! | ATTGCTTTAAACTAATTCAT+GGG | + | chr7_4:56027974-56027993 | None:intergenic | 20.0% |
!!! | AATTGCTTTAAACTAATTCA+TGG | + | chr7_4:56027975-56027994 | None:intergenic | 20.0% |
!! | ATTATGAATGATTATATGCT+AGG | + | chr7_4:56028079-56028098 | None:intergenic | 20.0% |
!!! | TGTTGAAACTAATTTTGAAA+AGG | - | chr7_4:56028283-56028302 | Msa1164380:CDS | 20.0% |
!!! | GTTGAAACTAATTTTGAAAA+GGG | - | chr7_4:56028284-56028303 | Msa1164380:CDS | 20.0% |
! | ATACATGGAAAAAGCAAAAA+CGG | - | chr7_4:56024352-56024371 | Msa1164380:CDS | 25.0% |
! | TCTTCTTCAGAATAAAATTG+TGG | + | chr7_4:56024434-56024453 | None:intergenic | 25.0% |
!!! | TTTGGTTTCGTTCTTTTATT+TGG | + | chr7_4:56024632-56024651 | None:intergenic | 25.0% |
! | ACATTAATAGGTAATATTGG+CGG | + | chr7_4:56024710-56024729 | None:intergenic | 25.0% |
! | ATCTTGTTCTTGACATTAAT+AGG | + | chr7_4:56024722-56024741 | None:intergenic | 25.0% |
!!! | TTGTGAAGCTTCTAAAATAA+GGG | + | chr7_4:56024943-56024962 | None:intergenic | 25.0% |
!!! | ATTGTGAAGCTTCTAAAATA+AGG | + | chr7_4:56024944-56024963 | None:intergenic | 25.0% |
!!! | CAAAACACCAAACTTTTTTA+AGG | - | chr7_4:56025408-56025427 | Msa1164380:intron | 25.0% |
! | GAAAGATCCTTAAAAAAGTT+TGG | + | chr7_4:56025418-56025437 | None:intergenic | 25.0% |
!! | GGACAAAATATTTTCTTACT+AGG | - | chr7_4:56025515-56025534 | Msa1164380:intron | 25.0% |
! | TAGCAGGAAGAATTATTATA+TGG | - | chr7_4:56025876-56025895 | Msa1164380:intron | 25.0% |
!! | ATTATTTTCCTTGATCATGT+TGG | - | chr7_4:56026005-56026024 | Msa1164380:intron | 25.0% |
! | GTCTGTGATAAAATCATTTA+TGG | - | chr7_4:56026097-56026116 | Msa1164380:intron | 25.0% |
! | AGTCTCAAAGATTACAAATT+TGG | + | chr7_4:56026306-56026325 | None:intergenic | 25.0% |
! | ATAGAGCACAGTTTAAATTT+CGG | + | chr7_4:56026921-56026940 | None:intergenic | 25.0% |
!! | TTAGGAAAGTAAGAATTTTG+AGG | + | chr7_4:56027027-56027046 | None:intergenic | 25.0% |
! | ATTAGAGGGTAAATTTAGAT+AGG | + | chr7_4:56027259-56027278 | None:intergenic | 25.0% |
! | ATTACAAGATTTCAAGATGA+TGG | + | chr7_4:56027413-56027432 | None:intergenic | 25.0% |
! | GTATCAAGATAAAGATATAG+AGG | + | chr7_4:56027440-56027459 | None:intergenic | 25.0% |
! | ATCAAGATTGAAAAGGAAAA+TGG | + | chr7_4:56027632-56027651 | None:intergenic | 25.0% |
! | AAACAGAACTGTAGTAATTA+AGG | - | chr7_4:56027662-56027681 | Msa1164380:CDS | 25.0% |
!! | ACAGAAATTTGCTATCACTA+AGG | - | chr7_4:56024316-56024335 | Msa1164380:CDS | 30.0% |
!!! | GTGGAATATTTTGAGTTTCT+TGG | + | chr7_4:56024493-56024512 | None:intergenic | 30.0% |
AAATATTCCACAAAACACAG+TGG | - | chr7_4:56024502-56024521 | Msa1164380:intron | 30.0% | |
TAATGTCAAGAACAAGATCA+AGG | - | chr7_4:56024724-56024743 | Msa1164380:CDS | 30.0% | |
AAAGGAGACTTTAGATACAA+AGG | - | chr7_4:56024874-56024893 | Msa1164380:intron | 30.0% | |
AAAGGATAAAAACGGTAAAC+CGG | - | chr7_4:56024892-56024911 | Msa1164380:intron | 30.0% | |
TAGGTCAAAAACTCAACATT+TGG | - | chr7_4:56025053-56025072 | Msa1164380:intron | 30.0% | |
AACTCAACATTTGGTCATTT+AGG | - | chr7_4:56025062-56025081 | Msa1164380:intron | 30.0% | |
ACTCAACATTTGGTCATTTA+GGG | - | chr7_4:56025063-56025082 | Msa1164380:intron | 30.0% | |
TACTTCTCTGTATCAATGTA+TGG | - | chr7_4:56025348-56025367 | Msa1164380:intron | 30.0% | |
TTTCCCTTTATGCCTAATAT+TGG | - | chr7_4:56025550-56025569 | Msa1164380:intron | 30.0% | |
AGACCAATATTAGGCATAAA+GGG | + | chr7_4:56025556-56025575 | None:intergenic | 30.0% | |
AAGACCAATATTAGGCATAA+AGG | + | chr7_4:56025557-56025576 | None:intergenic | 30.0% | |
TTATAGCACACTCAATAAAC+AGG | + | chr7_4:56025702-56025721 | None:intergenic | 30.0% | |
! | TATGGTCTTCAATTTGCTTA+TGG | - | chr7_4:56025894-56025913 | Msa1164380:intron | 30.0% |
AAATAATGTAGAGTCACCTA+AGG | + | chr7_4:56025992-56026011 | None:intergenic | 30.0% | |
AACTTAGTCTCATACATTCA+AGG | + | chr7_4:56026174-56026193 | None:intergenic | 30.0% | |
! | TTGAGCTGATTCAATTTGAT+TGG | - | chr7_4:56026375-56026394 | Msa1164380:intron | 30.0% |
ACATAATCAAAATCACAGCT+AGG | + | chr7_4:56026468-56026487 | None:intergenic | 30.0% | |
AAAACCTTGCATATGATAGA+AGG | + | chr7_4:56026506-56026525 | None:intergenic | 30.0% | |
! | AACAACTTACCTTTTTGTTG+CGG | + | chr7_4:56026557-56026576 | None:intergenic | 30.0% |
! | TATTTGAAGTCTTCAACTAG+AGG | + | chr7_4:56026709-56026728 | None:intergenic | 30.0% |
GTATGTATACTCAATGTTGT+CGG | + | chr7_4:56026944-56026963 | None:intergenic | 30.0% | |
!!! | CAACTGTGTGACTTATTTTA+TGG | - | chr7_4:56026985-56027004 | Msa1164380:intron | 30.0% |
TTCCTAACTTCAAACTTAGT+TGG | - | chr7_4:56027040-56027059 | Msa1164380:intron | 30.0% | |
! | TACCAACTAAGTTTGAAGTT+AGG | + | chr7_4:56027045-56027064 | None:intergenic | 30.0% |
! | TTGAAGTTCCTCTATGATTT+TGG | - | chr7_4:56027082-56027101 | Msa1164380:intron | 30.0% |
AACTGTTTCCAAAATCATAG+AGG | + | chr7_4:56027093-56027112 | None:intergenic | 30.0% | |
!!! | AGTTAGTTGGTTATTTTGGT+TGG | + | chr7_4:56027159-56027178 | None:intergenic | 30.0% |
! | AGTCAGTTAGTTGGTTATTT+TGG | + | chr7_4:56027163-56027182 | None:intergenic | 30.0% |
AATAAAGTGAGTCAGTTAGT+TGG | + | chr7_4:56027172-56027191 | None:intergenic | 30.0% | |
! | GATAGGTAGAAATTGACTTT+GGG | + | chr7_4:56027242-56027261 | None:intergenic | 30.0% |
! | AGATAGGTAGAAATTGACTT+TGG | + | chr7_4:56027243-56027262 | None:intergenic | 30.0% |
AGAACAAACTCTTATTCTGT+GGG | + | chr7_4:56027365-56027384 | None:intergenic | 30.0% | |
CTGTAGTAATTAAGGCATAA+TGG | - | chr7_4:56027670-56027689 | Msa1164380:CDS | 30.0% | |
AGAGATATCTTGACATTACT+TGG | - | chr7_4:56027782-56027801 | Msa1164380:CDS | 30.0% | |
ATGAACAGAAAGAAAATGCA+TGG | - | chr7_4:56028037-56028056 | Msa1164380:CDS | 30.0% | |
TGAACAGAAAGAAAATGCAT+GGG | - | chr7_4:56028038-56028057 | Msa1164380:CDS | 30.0% | |
CTGCATATTCATCATTAGTA+AGG | + | chr7_4:56028200-56028219 | None:intergenic | 30.0% | |
! | TTCAACATATGATAGTGCAA+GGG | + | chr7_4:56028270-56028289 | None:intergenic | 30.0% |
! | TTTCAACATATGATAGTGCA+AGG | + | chr7_4:56028271-56028290 | None:intergenic | 30.0% |
AAATTTCTGTTCCTTCGTCA+TGG | + | chr7_4:56024306-56024325 | None:intergenic | 35.0% | |
ATCACTAAGGAGAAGATCAA+AGG | - | chr7_4:56024329-56024348 | Msa1164380:CDS | 35.0% | |
AAGTAGCGAATACCAAGAAA+AGG | - | chr7_4:56024531-56024550 | Msa1164380:intron | 35.0% | |
TTAATAGGTAATATTGGCGG+AGG | + | chr7_4:56024707-56024726 | None:intergenic | 35.0% | |
AACAAGATCAAGGAGTTGAA+TGG | - | chr7_4:56024734-56024753 | Msa1164380:CDS | 35.0% | |
! | GTGGCATTAAAAGACGATTT+TGG | + | chr7_4:56024817-56024836 | None:intergenic | 35.0% |
! | TTTTCTCACCAAGACAGAAA+AGG | - | chr7_4:56024856-56024875 | Msa1164380:CDS | 35.0% |
! | TAAAGTCTCCTTTTCTGTCT+TGG | + | chr7_4:56024867-56024886 | None:intergenic | 35.0% |
ACAATCACTTCTAAACCAAC+CGG | + | chr7_4:56024914-56024933 | None:intergenic | 35.0% | |
TGGTTTAGAAGTGATTGTGT+TGG | - | chr7_4:56024916-56024935 | Msa1164380:intron | 35.0% | |
AGTGGAGAATGACTGATAAA+TGG | - | chr7_4:56024975-56024994 | Msa1164380:intron | 35.0% | |
GTGGAGAATGACTGATAAAT+GGG | - | chr7_4:56024976-56024995 | Msa1164380:intron | 35.0% | |
AAAATTGGAAACATGCTGTG+AGG | - | chr7_4:56025014-56025033 | Msa1164380:intron | 35.0% | |
AAATTGGAAACATGCTGTGA+GGG | - | chr7_4:56025015-56025034 | Msa1164380:intron | 35.0% | |
!!! | AGGGGAAATGGTTTTGAAAT+AGG | - | chr7_4:56025034-56025053 | Msa1164380:intron | 35.0% |
! | GTACTTTGTTTATGCGTTTC+TGG | - | chr7_4:56025166-56025185 | Msa1164380:intron | 35.0% |
! | CAGTTTTTGCTCTCTTTCAT+TGG | - | chr7_4:56025270-56025289 | Msa1164380:intron | 35.0% |
! | TAAGGATCTTTCCTTTTGTG+AGG | - | chr7_4:56025426-56025445 | Msa1164380:intron | 35.0% |
ATGCAATCAAACCTCACAAA+AGG | + | chr7_4:56025440-56025459 | None:intergenic | 35.0% | |
ATCAGTTCAGAATCTTTACC+TGG | - | chr7_4:56025472-56025491 | Msa1164380:intron | 35.0% | |
TAGTATGTGTCAAGTTCTGT+TGG | - | chr7_4:56025648-56025667 | Msa1164380:intron | 35.0% | |
AATCTCCAGTTTCATATGCA+GGG | - | chr7_4:56025828-56025847 | Msa1164380:intron | 35.0% | |
! | GACAACTTGTTCTAAGTAGT+TGG | - | chr7_4:56025916-56025935 | Msa1164380:intron | 35.0% |
CAATTTGACTATGACACCTT+AGG | - | chr7_4:56025973-56025992 | Msa1164380:intron | 35.0% | |
AAAAAGGACCAACATGATCA+AGG | + | chr7_4:56026016-56026035 | None:intergenic | 35.0% | |
! | TTTTCTCAAAACATTCGCAG+TGG | - | chr7_4:56026122-56026141 | Msa1164380:intron | 35.0% |
AGTCTCATACATTCAAGGAT+GGG | + | chr7_4:56026169-56026188 | None:intergenic | 35.0% | |
TAGTCTCATACATTCAAGGA+TGG | + | chr7_4:56026170-56026189 | None:intergenic | 35.0% | |
TTTGGTGGGATATAAGTGTT+TGG | - | chr7_4:56026245-56026264 | Msa1164380:intron | 35.0% | |
! | CATTGACACAAAGACGATTT+TGG | + | chr7_4:56026276-56026295 | None:intergenic | 35.0% |
ATCGTCTTTGTGTCAATGTT+AGG | - | chr7_4:56026278-56026297 | Msa1164380:intron | 35.0% | |
TCGTCTTTGTGTCAATGTTA+GGG | - | chr7_4:56026279-56026298 | Msa1164380:intron | 35.0% | |
! | TAACCACTAGCTTAAATGCT+TGG | + | chr7_4:56026408-56026427 | None:intergenic | 35.0% |
ATGATAGAAGGAACATGGAA+TGG | + | chr7_4:56026494-56026513 | None:intergenic | 35.0% | |
TGCATATGATAGAAGGAACA+TGG | + | chr7_4:56026499-56026518 | None:intergenic | 35.0% | |
TGTTCCTTCTATCATATGCA+AGG | - | chr7_4:56026499-56026518 | Msa1164380:intron | 35.0% | |
!! | CATTTTTCTTGGTAATTGGC+TGG | + | chr7_4:56026534-56026553 | None:intergenic | 35.0% |
! | TTTTGTTGCGGCATTTTTCT+TGG | + | chr7_4:56026545-56026564 | None:intergenic | 35.0% |
AGAAAAATGCCGCAACAAAA+AGG | - | chr7_4:56026545-56026564 | Msa1164380:intron | 35.0% | |
GAGAACAAACTCTTATTCTG+TGG | + | chr7_4:56027366-56027385 | None:intergenic | 35.0% | |
! | ATAAGAGTTTGTTCTCCACA+AGG | - | chr7_4:56027370-56027389 | Msa1164380:intron | 35.0% |
GAAAGAACTCTTGATTACGT+GGG | + | chr7_4:56027534-56027553 | None:intergenic | 35.0% | |
AGAAAGAACTCTTGATTACG+TGG | + | chr7_4:56027535-56027554 | None:intergenic | 35.0% | |
!! | TGGATTAAAAGTACTGGTTG+TGG | - | chr7_4:56027730-56027749 | Msa1164380:CDS | 35.0% |
AGATGATGATCTTGTTCGAA+TGG | - | chr7_4:56027754-56027773 | Msa1164380:CDS | 35.0% | |
! | TATCTTGACATTACTTGGTG+TGG | - | chr7_4:56027787-56027806 | Msa1164380:CDS | 35.0% |
TAAATTCGACCTCATTCTCA+TGG | - | chr7_4:56027868-56027887 | Msa1164380:CDS | 35.0% | |
GAACAGAAAGAAAATGCATG+GGG | - | chr7_4:56028039-56028058 | Msa1164380:CDS | 35.0% | |
GATGATCTACATCATGAAGA+TGG | - | chr7_4:56028240-56028259 | Msa1164380:CDS | 35.0% | |
AAATACTGAAGCCATGACGA+AGG | - | chr7_4:56024292-56024311 | Msa1164380:CDS | 40.0% | |
GGAGAAGATCAAAGGATACA+TGG | - | chr7_4:56024337-56024356 | Msa1164380:CDS | 40.0% | |
AAGTTATGGAGAAGGTTGAG+TGG | + | chr7_4:56024380-56024399 | None:intergenic | 40.0% | |
ACCTTCTCCATAACTTTGCT+TGG | - | chr7_4:56024384-56024403 | Msa1164380:CDS | 40.0% | |
ATTCCACAAAACACAGTGGA+AGG | - | chr7_4:56024506-56024525 | Msa1164380:intron | 40.0% | |
ACATGCTACCTTCATCACAT+GGG | + | chr7_4:56024562-56024581 | None:intergenic | 40.0% | |
TGAAGGTAGCATGTCTTATG+CGG | - | chr7_4:56024568-56024587 | Msa1164380:intron | 40.0% | |
TTTGCGTCAGATATCGATGA+AGG | - | chr7_4:56024791-56024810 | Msa1164380:CDS | 40.0% | |
CCAAGTTCGTCTTCTTTAAG+TGG | + | chr7_4:56024836-56024855 | None:intergenic | 40.0% | |
CCACTTAAAGAAGACGAACT+TGG | - | chr7_4:56024833-56024852 | Msa1164380:CDS | 40.0% | |
GATAAAAACGGTAAACCGGT+TGG | - | chr7_4:56024896-56024915 | Msa1164380:intron | 40.0% | |
TCACAATGTGCTTCAAGAAG+TGG | - | chr7_4:56024957-56024976 | Msa1164380:intron | 40.0% | |
AATTGGAAACATGCTGTGAG+GGG | - | chr7_4:56025016-56025035 | Msa1164380:intron | 40.0% | |
! | CATTTGGTCATTTAGGGTCA+AGG | - | chr7_4:56025069-56025088 | Msa1164380:intron | 40.0% |
!! | TGTTTATGCGTTTCTGGCTT+TGG | - | chr7_4:56025172-56025191 | Msa1164380:intron | 40.0% |
! | AGTCTAGAACTTGTGTTACC+AGG | + | chr7_4:56025493-56025512 | None:intergenic | 40.0% |
!! | GTAACACAAGTTCTAGACTC+TGG | - | chr7_4:56025494-56025513 | Msa1164380:intron | 40.0% |
AGCACACTCAATAAACAGGA+TGG | + | chr7_4:56025698-56025717 | None:intergenic | 40.0% | |
GATTCTCTTGCAACTACTTC+AGG | + | chr7_4:56025812-56025831 | None:intergenic | 40.0% | |
GAATCTCCAGTTTCATATGC+AGG | - | chr7_4:56025827-56025846 | Msa1164380:intron | 40.0% | |
ATCTCCAGTTTCATATGCAG+GGG | - | chr7_4:56025829-56025848 | Msa1164380:intron | 40.0% | |
ACTATTGAAGTTGCTGCTAG+TGG | + | chr7_4:56025857-56025876 | None:intergenic | 40.0% | |
TCATACATTCAAGGATGGGA+AGG | + | chr7_4:56026165-56026184 | None:intergenic | 40.0% | |
! | TGACACAAAGACGATTTTGG+TGG | + | chr7_4:56026273-56026292 | None:intergenic | 40.0% |
TTGCCAAGCATTTAAGCTAG+TGG | - | chr7_4:56026402-56026421 | Msa1164380:intron | 40.0% | |
!! | GCGGCATTTTTCTTGGTAAT+TGG | + | chr7_4:56026538-56026557 | None:intergenic | 40.0% |
GCTGTAAAAATGGGGGAAAA+CGG | + | chr7_4:56026581-56026600 | None:intergenic | 40.0% | |
TTTCGTCGCGCTGTAAAAAT+GGG | + | chr7_4:56026590-56026609 | None:intergenic | 40.0% | |
ATTTCGTCGCGCTGTAAAAA+TGG | + | chr7_4:56026591-56026610 | None:intergenic | 40.0% | |
CAACTAGAGGAAGAGTCTAA+AGG | + | chr7_4:56026696-56026715 | None:intergenic | 40.0% | |
! | CGAAATTTTATACGCGATCG+CGG | - | chr7_4:56026883-56026902 | Msa1164380:intron | 40.0% |
TTAAATTTCGGTCCCAGTCA+AGG | + | chr7_4:56026909-56026928 | None:intergenic | 40.0% | |
GAGTTCTTTCTTTCTCCACA+AGG | - | chr7_4:56027544-56027563 | Msa1164380:CDS | 40.0% | |
! | ACCAGTACTTTTAATCCACG+CGG | + | chr7_4:56027728-56027747 | None:intergenic | 40.0% |
GAAACTCACGCAGTCAAAAA+TGG | - | chr7_4:56027809-56027828 | Msa1164380:CDS | 40.0% | |
AAAGAAGCCTTAGACCTCAT+TGG | - | chr7_4:56027833-56027852 | Msa1164380:CDS | 40.0% | |
AACCGTAATTCCATCCATGA+CGG | + | chr7_4:56027906-56027925 | None:intergenic | 40.0% | |
TATGCAGAATTTCGCAATGC+AGG | - | chr7_4:56028213-56028232 | Msa1164380:CDS | 40.0% | |
ATGCAGAATTTCGCAATGCA+GGG | - | chr7_4:56028214-56028233 | Msa1164380:CDS | 40.0% | |
GCCAAGCAAAGTTATGGAGA+AGG | + | chr7_4:56024388-56024407 | None:intergenic | 45.0% | |
CGCATTGCCAAGCAAAGTTA+TGG | + | chr7_4:56024394-56024413 | None:intergenic | 45.0% | |
! | TCTCCTTCCACTGTGTTTTG+TGG | + | chr7_4:56024512-56024531 | None:intergenic | 45.0% |
! | ACATGGGTGACACCTTTTCT+TGG | + | chr7_4:56024546-56024565 | None:intergenic | 45.0% |
GACATGCTACCTTCATCACA+TGG | + | chr7_4:56024563-56024582 | None:intergenic | 45.0% | |
GAAACCAAAGACCACGAAGA+AGG | - | chr7_4:56024601-56024620 | Msa1164380:intron | 45.0% | |
! | ATTTGGTTCCACCTTCTTCG+TGG | + | chr7_4:56024615-56024634 | None:intergenic | 45.0% |
AAACATGCTGTGAGGGGAAA+TGG | - | chr7_4:56025022-56025041 | Msa1164380:intron | 45.0% | |
!!! | TGCGTTTCTGGCTTTGGTTT+TGG | - | chr7_4:56025178-56025197 | Msa1164380:intron | 45.0% |
CTACTACAGCACATGAACAG+GGG | + | chr7_4:56025211-56025230 | None:intergenic | 45.0% | |
GCTACTACAGCACATGAACA+GGG | + | chr7_4:56025212-56025231 | None:intergenic | 45.0% | |
TGCTACTACAGCACATGAAC+AGG | + | chr7_4:56025213-56025232 | None:intergenic | 45.0% | |
TGTGCTGTAGTAGCATGAGA+AGG | - | chr7_4:56025218-56025237 | Msa1164380:intron | 45.0% | |
AGTAGCATGAGAAGGAACCT+AGG | - | chr7_4:56025226-56025245 | Msa1164380:intron | 45.0% | |
GCAGCAACTTCAATAGTAGC+AGG | - | chr7_4:56025860-56025879 | Msa1164380:intron | 45.0% | |
ATGGGAAGGCTAAAGCTCAT+AGG | + | chr7_4:56026151-56026170 | None:intergenic | 45.0% | |
TTCGTCGCGCTGTAAAAATG+GGG | + | chr7_4:56026589-56026608 | None:intergenic | 45.0% | |
AGCGCGACGAAATATCGTTA+TGG | - | chr7_4:56026598-56026617 | Msa1164380:intron | 45.0% | |
GCGCGACGAAATATCGTTAT+GGG | - | chr7_4:56026599-56026618 | Msa1164380:intron | 45.0% | |
ATGCAGTTGTACTTGCCTTG+TGG | + | chr7_4:56027388-56027407 | None:intergenic | 45.0% | |
! | CCAGTACTTTTAATCCACGC+GGG | + | chr7_4:56027727-56027746 | None:intergenic | 45.0% |
TGATCCTAGCCATGAGAATG+AGG | + | chr7_4:56027880-56027899 | None:intergenic | 45.0% | |
ACCGTAATTCCATCCATGAC+GGG | + | chr7_4:56027905-56027924 | None:intergenic | 45.0% | |
GTCATGGATGGAATTACGGT+TGG | - | chr7_4:56027905-56027924 | Msa1164380:CDS | 45.0% | |
CATTCATATGTGTGCACTGC+AGG | - | chr7_4:56028116-56028135 | Msa1164380:CDS | 45.0% | |
! | AGGTGTCACCCATGTGATGA+AGG | - | chr7_4:56024551-56024570 | Msa1164380:intron | 50.0% |
ACCAAAGACCACGAAGAAGG+TGG | - | chr7_4:56024604-56024623 | Msa1164380:intron | 50.0% | |
TCCACCTTCTTCGTGGTCTT+TGG | + | chr7_4:56024608-56024627 | None:intergenic | 50.0% | |
GAACGAAACCAAAGACCACG+AGG | - | chr7_4:56024597-56024616 | Msa1164380:intron | 50.0% | |
GAAACCAAAGACCACGAGGA+AGG | - | chr7_4:56024643-56024662 | Msa1164380:intron | 50.0% | |
TCGTCGCGCTGTAAAAATGG+GGG | + | chr7_4:56026588-56026607 | None:intergenic | 50.0% | |
GTCGCAGATTTCGCGATTTC+AGG | + | chr7_4:56026822-56026841 | None:intergenic | 50.0% | |
TTGCAGTAGCACTTGCCTTG+TGG | + | chr7_4:56027562-56027581 | None:intergenic | 50.0% | |
GGGACTCTGTGATGATATGG+AGG | + | chr7_4:56027707-56027726 | None:intergenic | 50.0% | |
! | CCCGCGTGGATTAAAAGTAC+TGG | - | chr7_4:56027724-56027743 | Msa1164380:CDS | 50.0% |
AGCCTTAGACCTCATTGGCA+CGG | - | chr7_4:56027838-56027857 | Msa1164380:CDS | 50.0% | |
AACCGTGCCAATGAGGTCTA+AGG | + | chr7_4:56027843-56027862 | None:intergenic | 50.0% | |
TACGTTCAACCGTGCCAATG+AGG | + | chr7_4:56027850-56027869 | None:intergenic | 50.0% | |
TCGACCTCATTCTCATGGCT+AGG | - | chr7_4:56027873-56027892 | Msa1164380:CDS | 50.0% | |
GCCCGTCATGGATGGAATTA+CGG | - | chr7_4:56027901-56027920 | Msa1164380:CDS | 50.0% | |
! | CTGCGCGATTTAGAATACCC+TGG | - | chr7_4:56028150-56028169 | Msa1164380:CDS | 50.0% |
GAATACCCTGGCCAGATTGT+TGG | - | chr7_4:56028162-56028181 | Msa1164380:CDS | 50.0% | |
AGACACCAACAATCTGGCCA+GGG | + | chr7_4:56028170-56028189 | None:intergenic | 50.0% | |
GACGTGAGACACCAACAATC+TGG | + | chr7_4:56028176-56028195 | None:intergenic | 50.0% | |
ACCAAAGACCACGAGGAAGG+TGG | - | chr7_4:56024646-56024665 | Msa1164380:intron | 55.0% | |
TCCACCTTCCTCGTGGTCTT+TGG | + | chr7_4:56024650-56024669 | None:intergenic | 55.0% | |
TTTCGGTTCCACCTTCCTCG+TGG | + | chr7_4:56024657-56024676 | None:intergenic | 55.0% | |
GGCACCCCTGCATATGAAAC+TGG | + | chr7_4:56025836-56025855 | None:intergenic | 55.0% | |
CGCGGGACTCTGTGATGATA+TGG | + | chr7_4:56027710-56027729 | None:intergenic | 55.0% | |
TATCATCACAGAGTCCCGCG+TGG | - | chr7_4:56027710-56027729 | Msa1164380:CDS | 55.0% | |
AGGATCATGCCCGTCATGGA+TGG | - | chr7_4:56027893-56027912 | Msa1164380:CDS | 55.0% | |
GAGACACCAACAATCTGGCC+AGG | + | chr7_4:56028171-56028190 | None:intergenic | 55.0% | |
GGCTAGGATCATGCCCGTCA+TGG | - | chr7_4:56027889-56027908 | Msa1164380:CDS | 60.0% | |
TACGCGATCGCGGCCTTGAC+TGG | - | chr7_4:56026893-56026912 | Msa1164380:intron | 65.0% | |
ACGCGATCGCGGCCTTGACT+GGG | - | chr7_4:56026894-56026913 | Msa1164380:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 56024275 | 56028323 | 56024275 | ID=Msa1164380;Name=Msa1164380 |
chr7_4 | mRNA | 56024275 | 56028323 | 56024275 | ID=Msa1164380-mRNA-1;Parent=Msa1164380;Name=Msa1164380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|402 |
chr7_4 | exon | 56027503 | 56028323 | 56027503 | ID=Msa1164380-mRNA-1:exon:16597;Parent=Msa1164380-mRNA-1 |
chr7_4 | exon | 56024676 | 56024877 | 56024676 | ID=Msa1164380-mRNA-1:exon:16596;Parent=Msa1164380-mRNA-1 |
chr7_4 | exon | 56024275 | 56024460 | 56024275 | ID=Msa1164380-mRNA-1:exon:16595;Parent=Msa1164380-mRNA-1 |
chr7_4 | CDS | 56027503 | 56028323 | 56027503 | ID=Msa1164380-mRNA-1:cds;Parent=Msa1164380-mRNA-1 |
chr7_4 | CDS | 56024676 | 56024877 | 56024676 | ID=Msa1164380-mRNA-1:cds;Parent=Msa1164380-mRNA-1 |
chr7_4 | CDS | 56024275 | 56024460 | 56024275 | ID=Msa1164380-mRNA-1:cds;Parent=Msa1164380-mRNA-1 |
Gene Sequence |
Protein sequence |