AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1164380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164380 MtrunA17_Chr7g0262311 92.000 275 21 1 1 275 1 274 0.0 523
Msa1164380 MtrunA17_Chr5g0395781 50.352 284 115 7 1 275 1 267 7.88e-84 257
Msa1164380 MtrunA17_Chr5g0395751 57.940 233 64 4 16 234 6 218 1.21e-69 219
Msa1164380 MtrunA17_Chr5g0395741 53.365 208 74 4 71 275 118 305 2.43e-54 182
Msa1164380 MtrunA17_Chr3g0097201 58.857 175 57 2 102 275 1 161 1.07e-52 173
Msa1164380 MtrunA17_Chr3g0097211 67.816 87 25 1 6 89 2 88 6.32e-30 113
Msa1164380 MtrunA17_Chr4g0033741 38.095 189 90 7 35 222 10 172 1.19e-23 96.7
Msa1164380 MtrunA17_Chr5g0444241 37.584 149 88 3 129 272 186 334 3.66e-23 99.4
Msa1164380 MtrunA17_Chr7g0262351 47.500 120 58 3 279 398 22 136 4.64e-23 94.0
Msa1164380 MtrunA17_Chr8g0364781 45.545 101 52 2 279 377 12 111 2.59e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164380 AT5G26594.1 39.167 120 69 2 279 398 18 133 5.74e-17 77.8
Msa1164380 AT3G04280.1 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1164380 AT3G04280.2 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1164380 AT3G04280.3 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1164380 AT3G24850.1 30.556 180 102 6 115 285 183 348 2.90e-13 70.9
Msa1164380 AT2G31720.1 32.099 162 104 3 156 314 137 295 7.03e-13 69.3
Msa1164380 AT1G05920.1 31.746 126 78 4 156 273 171 296 1.52e-11 65.5
Msa1164380 AT5G24050.1 25.610 246 158 6 35 271 100 329 3.45e-11 64.7

Find 82 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCAACATTTGGTCATTT+AGG 0.092697 7_4:-56027514 Msa1164380:CDS
TTTACAGTCTTATACAAAAT+TGG 0.190742 7_4:-56027577 Msa1164380:CDS
GTGGCATTAAAAGACGATTT+TGG 0.230260 7_4:+56027762 None:intergenic
AGTGGAGAATGACTGATAAA+TGG 0.236879 7_4:-56027601 Msa1164380:CDS
TCCACCTTCTTCGTGGTCTT+TGG 0.253725 7_4:+56027971 None:intergenic
ACTCAACATTTGGTCATTTA+GGG 0.255771 7_4:-56027513 Msa1164380:CDS
TCCACCTTCCTCGTGGTCTT+TGG 0.286800 7_4:+56027929 None:intergenic
ATCTTGTTCTTGACATTAAT+AGG 0.287639 7_4:+56027857 None:intergenic
ATTGTGAAGCTTCTAAAATA+AGG 0.305880 7_4:+56027635 None:intergenic
TTGACATTAATAGGTAATAT+TGG 0.338094 7_4:+56027866 None:intergenic
CCAAGTTCGTCTTCTTTAAG+TGG 0.388473 7_4:+56027743 None:intergenic
CGCATTGCCAAGCAAAGTTA+TGG 0.391834 7_4:+56028185 None:intergenic
GCCCGTCATGGATGGAATTA+CGG 0.406314 7_4:-56024675 Msa1164380:intron
CTGCATATTCATCATTAGTA+AGG 0.410681 7_4:+56024379 None:intergenic
GTGGAGAATGACTGATAAAT+GGG 0.417628 7_4:-56027600 Msa1164380:CDS
ACCTTCTCCATAACTTTGCT+TGG 0.420476 7_4:-56028192 Msa1164380:CDS
AGAGATATCTTGACATTACT+TGG 0.437895 7_4:-56024794 Msa1164380:CDS
CCACTTAAAGAAGACGAACT+TGG 0.439642 7_4:-56027743 Msa1164380:CDS
GAATACCCTGGCCAGATTGT+TGG 0.444431 7_4:-56024414 Msa1164380:CDS
TTGTGAAGCTTCTAAAATAA+GGG 0.449884 7_4:+56027636 None:intergenic
AACCGTGCCAATGAGGTCTA+AGG 0.458884 7_4:+56024736 None:intergenic
TATGCAGAATTTCGCAATGC+AGG 0.461823 7_4:-56024363 Msa1164380:CDS
AAACATGCTGTGAGGGGAAA+TGG 0.465819 7_4:-56027554 Msa1164380:CDS
ACAATCACTTCTAAACCAAC+CGG 0.487692 7_4:+56027665 None:intergenic
GACGTGAGACACCAACAATC+TGG 0.490889 7_4:+56024403 None:intergenic
GATGATCTACATCATGAAGA+TGG 0.493143 7_4:-56024336 Msa1164380:CDS
ATTTGGTTCCACCTTCTTCG+TGG 0.495745 7_4:+56027964 None:intergenic
CCCGCGTGGATTAAAAGTAC+TGG 0.511605 7_4:-56024852 Msa1164380:CDS
GAGACACCAACAATCTGGCC+AGG 0.513873 7_4:+56024408 None:intergenic
AAAGAAGCCTTAGACCTCAT+TGG 0.516268 7_4:-56024743 Msa1164380:CDS
TCACAATGTGCTTCAAGAAG+TGG 0.523622 7_4:-56027619 Msa1164380:CDS
AGGATCATGCCCGTCATGGA+TGG 0.527719 7_4:-56024683 Msa1164380:CDS
AAATTTCTGTTCCTTCGTCA+TGG 0.529500 7_4:+56028273 None:intergenic
TATCTTGACATTACTTGGTG+TGG 0.530817 7_4:-56024789 Msa1164380:CDS
AAATTGGAAACATGCTGTGA+GGG 0.531590 7_4:-56027561 Msa1164380:CDS
TTTCAACATATGATAGTGCA+AGG 0.532595 7_4:+56024308 None:intergenic
AAAAGGTCATGCTAGTTGAC+AGG 0.534345 7_4:+56024264 None:intergenic
AGGTGTCACCCATGTGATGA+AGG 0.535873 7_4:-56028025 Msa1164380:CDS
AAGTAGCGAATACCAAGAAA+AGG 0.536745 7_4:-56028045 Msa1164380:CDS
CATTTGGTCATTTAGGGTCA+AGG 0.537795 7_4:-56027507 Msa1164380:CDS
TTTGCGTCAGATATCGATGA+AGG 0.539968 7_4:-56027785 Msa1164380:CDS
GGAGAAGATCAAAGGATACA+TGG 0.546580 7_4:-56028239 Msa1164380:CDS
GGCTAGGATCATGCCCGTCA+TGG 0.548604 7_4:-56024687 Msa1164380:CDS
ACCGTAATTCCATCCATGAC+GGG 0.549235 7_4:+56024674 None:intergenic
ACAGAAATTTGCTATCACTA+AGG 0.550411 7_4:-56028260 Msa1164380:CDS
GAAACCAAAGACCACGAAGA+AGG 0.554191 7_4:-56027975 Msa1164380:CDS
TAATGTCAAGAACAAGATCA+AGG 0.554858 7_4:-56027852 Msa1164380:CDS
TGGATTAAAAGTACTGGTTG+TGG 0.556379 7_4:-56024846 Msa1164380:CDS
AACAAGATCAAGGAGTTGAA+TGG 0.557360 7_4:-56027842 Msa1164380:CDS
TCTTCTTCAGAATAAAATTG+TGG 0.559109 7_4:+56028145 None:intergenic
AAAGGAGACTTTAGATACAA+AGG 0.565224 7_4:-56027702 Msa1164380:CDS
GCCAAGCAAAGTTATGGAGA+AGG 0.574243 7_4:+56028191 None:intergenic
ATTCCACAAAACACAGTGGA+AGG 0.576751 7_4:-56028070 Msa1164380:CDS
ACCAAAGACCACGAGGAAGG+TGG 0.579088 7_4:-56027930 Msa1164380:CDS
ATGCAGAATTTCGCAATGCA+GGG 0.581025 7_4:-56024362 Msa1164380:CDS
TGATCCTAGCCATGAGAATG+AGG 0.586084 7_4:+56024699 None:intergenic
ATCACTAAGGAGAAGATCAA+AGG 0.586998 7_4:-56028247 Msa1164380:CDS
TAAATTCGACCTCATTCTCA+TGG 0.588335 7_4:-56024708 Msa1164380:CDS
TCGACCTCATTCTCATGGCT+AGG 0.592585 7_4:-56024703 Msa1164380:CDS
AACCGTAATTCCATCCATGA+CGG 0.593130 7_4:+56024673 None:intergenic
GACATGCTACCTTCATCACA+TGG 0.593230 7_4:+56028016 None:intergenic
TTAATAGGTAATATTGGCGG+AGG 0.598936 7_4:+56027872 None:intergenic
TACGTTCAACCGTGCCAATG+AGG 0.601575 7_4:+56024729 None:intergenic
GAAACCAAAGACCACGAGGA+AGG 0.602167 7_4:-56027933 Msa1164380:CDS
ACCAAAGACCACGAAGAAGG+TGG 0.606619 7_4:-56027972 Msa1164380:CDS
AGCCTTAGACCTCATTGGCA+CGG 0.608494 7_4:-56024738 Msa1164380:CDS
ACATTAATAGGTAATATTGG+CGG 0.614565 7_4:+56027869 None:intergenic
TGGTTTAGAAGTGATTGTGT+TGG 0.618872 7_4:-56027660 Msa1164380:CDS
AGATGATGATCTTGTTCGAA+TGG 0.623757 7_4:-56024822 Msa1164380:CDS
TTCAACATATGATAGTGCAA+GGG 0.630612 7_4:+56024309 None:intergenic
TTTCGGTTCCACCTTCCTCG+TGG 0.635344 7_4:+56027922 None:intergenic
AATTGGAAACATGCTGTGAG+GGG 0.651158 7_4:-56027560 Msa1164380:CDS
TGAAGGTAGCATGTCTTATG+CGG 0.655262 7_4:-56028008 Msa1164380:CDS
AGACACCAACAATCTGGCCA+GGG 0.657108 7_4:+56024409 None:intergenic
AAATACTGAAGCCATGACGA+AGG 0.663599 7_4:-56028284 Msa1164380:CDS
AAAATTGGAAACATGCTGTG+AGG 0.670199 7_4:-56027562 Msa1164380:CDS
AAGTTATGGAGAAGGTTGAG+TGG 0.683312 7_4:+56028199 None:intergenic
GAACGAAACCAAAGACCACG+AGG 0.685629 7_4:-56027937 Msa1164380:CDS
CTGCGCGATTTAGAATACCC+TGG 0.695519 7_4:-56024426 Msa1164380:CDS
ACATGCTACCTTCATCACAT+GGG 0.704522 7_4:+56028017 None:intergenic
AAATATTCCACAAAACACAG+TGG 0.735384 7_4:-56028074 Msa1164380:CDS
TATCATCACAGAGTCCCGCG+TGG 0.741838 7_4:-56024866 Msa1164380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATCTATTATGTTT+TGG - chr7_4:56026227-56026246 Msa1164380:intron 10.0%
!! TGAAAAAAAAAAGTAAAAAA+AGG + chr7_4:56027124-56027143 None:intergenic 10.0%
!!! TTTTTCTTATCTTGTTTTTT+CGG + chr7_4:56024674-56024693 None:intergenic 15.0%
!! AAAACAAGATAAGAAAAATT+TGG - chr7_4:56024676-56024695 Msa1164380:CDS 15.0%
!!! TGTATGATTTTCTTTTTAAA+AGG - chr7_4:56025594-56025613 Msa1164380:intron 15.0%
!! TCAAAACTTATAGATTAAAA+AGG + chr7_4:56026032-56026051 None:intergenic 15.0%
!!! AAATTTGTCACAAATTTTAT+GGG + chr7_4:56026342-56026361 None:intergenic 15.0%
!!! AAAATTTGTCACAAATTTTA+TGG + chr7_4:56026343-56026362 None:intergenic 15.0%
!! TTACAAATATTTCAAAATGA+AGG + chr7_4:56026438-56026457 None:intergenic 15.0%
!!! TTCATTTTGAAATATTTGTA+AGG - chr7_4:56026437-56026456 Msa1164380:intron 15.0%
!! ATTTATATCTAAGAATTAGA+GGG + chr7_4:56027273-56027292 None:intergenic 15.0%
!! TATTTATATCTAAGAATTAG+AGG + chr7_4:56027274-56027293 None:intergenic 15.0%
!! TTGACATTAATAGGTAATAT+TGG + chr7_4:56024713-56024732 None:intergenic 20.0%
!! TTAGATACAAAGGATAAAAA+CGG - chr7_4:56024884-56024903 Msa1164380:intron 20.0%
!!! TTTACAGTCTTATACAAAAT+TGG - chr7_4:56024999-56025018 Msa1164380:intron 20.0%
!! CTTTGTACTCAAAATTAATT+AGG - chr7_4:56025102-56025121 Msa1164380:intron 20.0%
!! ATATAGAAAAACAAATTCCT+AGG + chr7_4:56025246-56025265 None:intergenic 20.0%
!! TTGATAAAAAGACCAATATT+AGG + chr7_4:56025565-56025584 None:intergenic 20.0%
!!! ATTTATCTATTATGTTTTGG+TGG - chr7_4:56026230-56026249 Msa1164380:intron 20.0%
!!! TTTATCTATTATGTTTTGGT+GGG - chr7_4:56026231-56026250 Msa1164380:intron 20.0%
!! AATATTTCAAAATGAAGGTA+CGG + chr7_4:56026433-56026452 None:intergenic 20.0%
!!! TATTTTATGGACTAACAATT+TGG - chr7_4:56026998-56027017 Msa1164380:intron 20.0%
!! ATAGAAAATCAAGATTGAAA+AGG + chr7_4:56027639-56027658 None:intergenic 20.0%
!! TAATTACATACATACATACA+CGG - chr7_4:56027937-56027956 Msa1164380:CDS 20.0%
!!! ATTGCTTTAAACTAATTCAT+GGG + chr7_4:56027974-56027993 None:intergenic 20.0%
!!! AATTGCTTTAAACTAATTCA+TGG + chr7_4:56027975-56027994 None:intergenic 20.0%
!! ATTATGAATGATTATATGCT+AGG + chr7_4:56028079-56028098 None:intergenic 20.0%
!!! TGTTGAAACTAATTTTGAAA+AGG - chr7_4:56028283-56028302 Msa1164380:CDS 20.0%
!!! GTTGAAACTAATTTTGAAAA+GGG - chr7_4:56028284-56028303 Msa1164380:CDS 20.0%
! ATACATGGAAAAAGCAAAAA+CGG - chr7_4:56024352-56024371 Msa1164380:CDS 25.0%
! TCTTCTTCAGAATAAAATTG+TGG + chr7_4:56024434-56024453 None:intergenic 25.0%
!!! TTTGGTTTCGTTCTTTTATT+TGG + chr7_4:56024632-56024651 None:intergenic 25.0%
! ACATTAATAGGTAATATTGG+CGG + chr7_4:56024710-56024729 None:intergenic 25.0%
! ATCTTGTTCTTGACATTAAT+AGG + chr7_4:56024722-56024741 None:intergenic 25.0%
!!! TTGTGAAGCTTCTAAAATAA+GGG + chr7_4:56024943-56024962 None:intergenic 25.0%
!!! ATTGTGAAGCTTCTAAAATA+AGG + chr7_4:56024944-56024963 None:intergenic 25.0%
!!! CAAAACACCAAACTTTTTTA+AGG - chr7_4:56025408-56025427 Msa1164380:intron 25.0%
! GAAAGATCCTTAAAAAAGTT+TGG + chr7_4:56025418-56025437 None:intergenic 25.0%
!! GGACAAAATATTTTCTTACT+AGG - chr7_4:56025515-56025534 Msa1164380:intron 25.0%
! TAGCAGGAAGAATTATTATA+TGG - chr7_4:56025876-56025895 Msa1164380:intron 25.0%
!! ATTATTTTCCTTGATCATGT+TGG - chr7_4:56026005-56026024 Msa1164380:intron 25.0%
! GTCTGTGATAAAATCATTTA+TGG - chr7_4:56026097-56026116 Msa1164380:intron 25.0%
! AGTCTCAAAGATTACAAATT+TGG + chr7_4:56026306-56026325 None:intergenic 25.0%
! ATAGAGCACAGTTTAAATTT+CGG + chr7_4:56026921-56026940 None:intergenic 25.0%
!! TTAGGAAAGTAAGAATTTTG+AGG + chr7_4:56027027-56027046 None:intergenic 25.0%
! ATTAGAGGGTAAATTTAGAT+AGG + chr7_4:56027259-56027278 None:intergenic 25.0%
! ATTACAAGATTTCAAGATGA+TGG + chr7_4:56027413-56027432 None:intergenic 25.0%
! GTATCAAGATAAAGATATAG+AGG + chr7_4:56027440-56027459 None:intergenic 25.0%
! ATCAAGATTGAAAAGGAAAA+TGG + chr7_4:56027632-56027651 None:intergenic 25.0%
! AAACAGAACTGTAGTAATTA+AGG - chr7_4:56027662-56027681 Msa1164380:CDS 25.0%
!! ACAGAAATTTGCTATCACTA+AGG - chr7_4:56024316-56024335 Msa1164380:CDS 30.0%
!!! GTGGAATATTTTGAGTTTCT+TGG + chr7_4:56024493-56024512 None:intergenic 30.0%
AAATATTCCACAAAACACAG+TGG - chr7_4:56024502-56024521 Msa1164380:intron 30.0%
TAATGTCAAGAACAAGATCA+AGG - chr7_4:56024724-56024743 Msa1164380:CDS 30.0%
AAAGGAGACTTTAGATACAA+AGG - chr7_4:56024874-56024893 Msa1164380:intron 30.0%
AAAGGATAAAAACGGTAAAC+CGG - chr7_4:56024892-56024911 Msa1164380:intron 30.0%
TAGGTCAAAAACTCAACATT+TGG - chr7_4:56025053-56025072 Msa1164380:intron 30.0%
AACTCAACATTTGGTCATTT+AGG - chr7_4:56025062-56025081 Msa1164380:intron 30.0%
ACTCAACATTTGGTCATTTA+GGG - chr7_4:56025063-56025082 Msa1164380:intron 30.0%
TACTTCTCTGTATCAATGTA+TGG - chr7_4:56025348-56025367 Msa1164380:intron 30.0%
TTTCCCTTTATGCCTAATAT+TGG - chr7_4:56025550-56025569 Msa1164380:intron 30.0%
AGACCAATATTAGGCATAAA+GGG + chr7_4:56025556-56025575 None:intergenic 30.0%
AAGACCAATATTAGGCATAA+AGG + chr7_4:56025557-56025576 None:intergenic 30.0%
TTATAGCACACTCAATAAAC+AGG + chr7_4:56025702-56025721 None:intergenic 30.0%
! TATGGTCTTCAATTTGCTTA+TGG - chr7_4:56025894-56025913 Msa1164380:intron 30.0%
AAATAATGTAGAGTCACCTA+AGG + chr7_4:56025992-56026011 None:intergenic 30.0%
AACTTAGTCTCATACATTCA+AGG + chr7_4:56026174-56026193 None:intergenic 30.0%
! TTGAGCTGATTCAATTTGAT+TGG - chr7_4:56026375-56026394 Msa1164380:intron 30.0%
ACATAATCAAAATCACAGCT+AGG + chr7_4:56026468-56026487 None:intergenic 30.0%
AAAACCTTGCATATGATAGA+AGG + chr7_4:56026506-56026525 None:intergenic 30.0%
! AACAACTTACCTTTTTGTTG+CGG + chr7_4:56026557-56026576 None:intergenic 30.0%
! TATTTGAAGTCTTCAACTAG+AGG + chr7_4:56026709-56026728 None:intergenic 30.0%
GTATGTATACTCAATGTTGT+CGG + chr7_4:56026944-56026963 None:intergenic 30.0%
!!! CAACTGTGTGACTTATTTTA+TGG - chr7_4:56026985-56027004 Msa1164380:intron 30.0%
TTCCTAACTTCAAACTTAGT+TGG - chr7_4:56027040-56027059 Msa1164380:intron 30.0%
! TACCAACTAAGTTTGAAGTT+AGG + chr7_4:56027045-56027064 None:intergenic 30.0%
! TTGAAGTTCCTCTATGATTT+TGG - chr7_4:56027082-56027101 Msa1164380:intron 30.0%
AACTGTTTCCAAAATCATAG+AGG + chr7_4:56027093-56027112 None:intergenic 30.0%
!!! AGTTAGTTGGTTATTTTGGT+TGG + chr7_4:56027159-56027178 None:intergenic 30.0%
! AGTCAGTTAGTTGGTTATTT+TGG + chr7_4:56027163-56027182 None:intergenic 30.0%
AATAAAGTGAGTCAGTTAGT+TGG + chr7_4:56027172-56027191 None:intergenic 30.0%
! GATAGGTAGAAATTGACTTT+GGG + chr7_4:56027242-56027261 None:intergenic 30.0%
! AGATAGGTAGAAATTGACTT+TGG + chr7_4:56027243-56027262 None:intergenic 30.0%
AGAACAAACTCTTATTCTGT+GGG + chr7_4:56027365-56027384 None:intergenic 30.0%
CTGTAGTAATTAAGGCATAA+TGG - chr7_4:56027670-56027689 Msa1164380:CDS 30.0%
AGAGATATCTTGACATTACT+TGG - chr7_4:56027782-56027801 Msa1164380:CDS 30.0%
ATGAACAGAAAGAAAATGCA+TGG - chr7_4:56028037-56028056 Msa1164380:CDS 30.0%
TGAACAGAAAGAAAATGCAT+GGG - chr7_4:56028038-56028057 Msa1164380:CDS 30.0%
CTGCATATTCATCATTAGTA+AGG + chr7_4:56028200-56028219 None:intergenic 30.0%
! TTCAACATATGATAGTGCAA+GGG + chr7_4:56028270-56028289 None:intergenic 30.0%
! TTTCAACATATGATAGTGCA+AGG + chr7_4:56028271-56028290 None:intergenic 30.0%
AAATTTCTGTTCCTTCGTCA+TGG + chr7_4:56024306-56024325 None:intergenic 35.0%
ATCACTAAGGAGAAGATCAA+AGG - chr7_4:56024329-56024348 Msa1164380:CDS 35.0%
AAGTAGCGAATACCAAGAAA+AGG - chr7_4:56024531-56024550 Msa1164380:intron 35.0%
TTAATAGGTAATATTGGCGG+AGG + chr7_4:56024707-56024726 None:intergenic 35.0%
AACAAGATCAAGGAGTTGAA+TGG - chr7_4:56024734-56024753 Msa1164380:CDS 35.0%
! GTGGCATTAAAAGACGATTT+TGG + chr7_4:56024817-56024836 None:intergenic 35.0%
! TTTTCTCACCAAGACAGAAA+AGG - chr7_4:56024856-56024875 Msa1164380:CDS 35.0%
! TAAAGTCTCCTTTTCTGTCT+TGG + chr7_4:56024867-56024886 None:intergenic 35.0%
ACAATCACTTCTAAACCAAC+CGG + chr7_4:56024914-56024933 None:intergenic 35.0%
TGGTTTAGAAGTGATTGTGT+TGG - chr7_4:56024916-56024935 Msa1164380:intron 35.0%
AGTGGAGAATGACTGATAAA+TGG - chr7_4:56024975-56024994 Msa1164380:intron 35.0%
GTGGAGAATGACTGATAAAT+GGG - chr7_4:56024976-56024995 Msa1164380:intron 35.0%
AAAATTGGAAACATGCTGTG+AGG - chr7_4:56025014-56025033 Msa1164380:intron 35.0%
AAATTGGAAACATGCTGTGA+GGG - chr7_4:56025015-56025034 Msa1164380:intron 35.0%
!!! AGGGGAAATGGTTTTGAAAT+AGG - chr7_4:56025034-56025053 Msa1164380:intron 35.0%
! GTACTTTGTTTATGCGTTTC+TGG - chr7_4:56025166-56025185 Msa1164380:intron 35.0%
! CAGTTTTTGCTCTCTTTCAT+TGG - chr7_4:56025270-56025289 Msa1164380:intron 35.0%
! TAAGGATCTTTCCTTTTGTG+AGG - chr7_4:56025426-56025445 Msa1164380:intron 35.0%
ATGCAATCAAACCTCACAAA+AGG + chr7_4:56025440-56025459 None:intergenic 35.0%
ATCAGTTCAGAATCTTTACC+TGG - chr7_4:56025472-56025491 Msa1164380:intron 35.0%
TAGTATGTGTCAAGTTCTGT+TGG - chr7_4:56025648-56025667 Msa1164380:intron 35.0%
AATCTCCAGTTTCATATGCA+GGG - chr7_4:56025828-56025847 Msa1164380:intron 35.0%
! GACAACTTGTTCTAAGTAGT+TGG - chr7_4:56025916-56025935 Msa1164380:intron 35.0%
CAATTTGACTATGACACCTT+AGG - chr7_4:56025973-56025992 Msa1164380:intron 35.0%
AAAAAGGACCAACATGATCA+AGG + chr7_4:56026016-56026035 None:intergenic 35.0%
! TTTTCTCAAAACATTCGCAG+TGG - chr7_4:56026122-56026141 Msa1164380:intron 35.0%
AGTCTCATACATTCAAGGAT+GGG + chr7_4:56026169-56026188 None:intergenic 35.0%
TAGTCTCATACATTCAAGGA+TGG + chr7_4:56026170-56026189 None:intergenic 35.0%
TTTGGTGGGATATAAGTGTT+TGG - chr7_4:56026245-56026264 Msa1164380:intron 35.0%
! CATTGACACAAAGACGATTT+TGG + chr7_4:56026276-56026295 None:intergenic 35.0%
ATCGTCTTTGTGTCAATGTT+AGG - chr7_4:56026278-56026297 Msa1164380:intron 35.0%
TCGTCTTTGTGTCAATGTTA+GGG - chr7_4:56026279-56026298 Msa1164380:intron 35.0%
! TAACCACTAGCTTAAATGCT+TGG + chr7_4:56026408-56026427 None:intergenic 35.0%
ATGATAGAAGGAACATGGAA+TGG + chr7_4:56026494-56026513 None:intergenic 35.0%
TGCATATGATAGAAGGAACA+TGG + chr7_4:56026499-56026518 None:intergenic 35.0%
TGTTCCTTCTATCATATGCA+AGG - chr7_4:56026499-56026518 Msa1164380:intron 35.0%
!! CATTTTTCTTGGTAATTGGC+TGG + chr7_4:56026534-56026553 None:intergenic 35.0%
! TTTTGTTGCGGCATTTTTCT+TGG + chr7_4:56026545-56026564 None:intergenic 35.0%
AGAAAAATGCCGCAACAAAA+AGG - chr7_4:56026545-56026564 Msa1164380:intron 35.0%
GAGAACAAACTCTTATTCTG+TGG + chr7_4:56027366-56027385 None:intergenic 35.0%
! ATAAGAGTTTGTTCTCCACA+AGG - chr7_4:56027370-56027389 Msa1164380:intron 35.0%
GAAAGAACTCTTGATTACGT+GGG + chr7_4:56027534-56027553 None:intergenic 35.0%
AGAAAGAACTCTTGATTACG+TGG + chr7_4:56027535-56027554 None:intergenic 35.0%
!! TGGATTAAAAGTACTGGTTG+TGG - chr7_4:56027730-56027749 Msa1164380:CDS 35.0%
AGATGATGATCTTGTTCGAA+TGG - chr7_4:56027754-56027773 Msa1164380:CDS 35.0%
! TATCTTGACATTACTTGGTG+TGG - chr7_4:56027787-56027806 Msa1164380:CDS 35.0%
TAAATTCGACCTCATTCTCA+TGG - chr7_4:56027868-56027887 Msa1164380:CDS 35.0%
GAACAGAAAGAAAATGCATG+GGG - chr7_4:56028039-56028058 Msa1164380:CDS 35.0%
GATGATCTACATCATGAAGA+TGG - chr7_4:56028240-56028259 Msa1164380:CDS 35.0%
AAATACTGAAGCCATGACGA+AGG - chr7_4:56024292-56024311 Msa1164380:CDS 40.0%
GGAGAAGATCAAAGGATACA+TGG - chr7_4:56024337-56024356 Msa1164380:CDS 40.0%
AAGTTATGGAGAAGGTTGAG+TGG + chr7_4:56024380-56024399 None:intergenic 40.0%
ACCTTCTCCATAACTTTGCT+TGG - chr7_4:56024384-56024403 Msa1164380:CDS 40.0%
ATTCCACAAAACACAGTGGA+AGG - chr7_4:56024506-56024525 Msa1164380:intron 40.0%
ACATGCTACCTTCATCACAT+GGG + chr7_4:56024562-56024581 None:intergenic 40.0%
TGAAGGTAGCATGTCTTATG+CGG - chr7_4:56024568-56024587 Msa1164380:intron 40.0%
TTTGCGTCAGATATCGATGA+AGG - chr7_4:56024791-56024810 Msa1164380:CDS 40.0%
CCAAGTTCGTCTTCTTTAAG+TGG + chr7_4:56024836-56024855 None:intergenic 40.0%
CCACTTAAAGAAGACGAACT+TGG - chr7_4:56024833-56024852 Msa1164380:CDS 40.0%
GATAAAAACGGTAAACCGGT+TGG - chr7_4:56024896-56024915 Msa1164380:intron 40.0%
TCACAATGTGCTTCAAGAAG+TGG - chr7_4:56024957-56024976 Msa1164380:intron 40.0%
AATTGGAAACATGCTGTGAG+GGG - chr7_4:56025016-56025035 Msa1164380:intron 40.0%
! CATTTGGTCATTTAGGGTCA+AGG - chr7_4:56025069-56025088 Msa1164380:intron 40.0%
!! TGTTTATGCGTTTCTGGCTT+TGG - chr7_4:56025172-56025191 Msa1164380:intron 40.0%
! AGTCTAGAACTTGTGTTACC+AGG + chr7_4:56025493-56025512 None:intergenic 40.0%
!! GTAACACAAGTTCTAGACTC+TGG - chr7_4:56025494-56025513 Msa1164380:intron 40.0%
AGCACACTCAATAAACAGGA+TGG + chr7_4:56025698-56025717 None:intergenic 40.0%
GATTCTCTTGCAACTACTTC+AGG + chr7_4:56025812-56025831 None:intergenic 40.0%
GAATCTCCAGTTTCATATGC+AGG - chr7_4:56025827-56025846 Msa1164380:intron 40.0%
ATCTCCAGTTTCATATGCAG+GGG - chr7_4:56025829-56025848 Msa1164380:intron 40.0%
ACTATTGAAGTTGCTGCTAG+TGG + chr7_4:56025857-56025876 None:intergenic 40.0%
TCATACATTCAAGGATGGGA+AGG + chr7_4:56026165-56026184 None:intergenic 40.0%
! TGACACAAAGACGATTTTGG+TGG + chr7_4:56026273-56026292 None:intergenic 40.0%
TTGCCAAGCATTTAAGCTAG+TGG - chr7_4:56026402-56026421 Msa1164380:intron 40.0%
!! GCGGCATTTTTCTTGGTAAT+TGG + chr7_4:56026538-56026557 None:intergenic 40.0%
GCTGTAAAAATGGGGGAAAA+CGG + chr7_4:56026581-56026600 None:intergenic 40.0%
TTTCGTCGCGCTGTAAAAAT+GGG + chr7_4:56026590-56026609 None:intergenic 40.0%
ATTTCGTCGCGCTGTAAAAA+TGG + chr7_4:56026591-56026610 None:intergenic 40.0%
CAACTAGAGGAAGAGTCTAA+AGG + chr7_4:56026696-56026715 None:intergenic 40.0%
! CGAAATTTTATACGCGATCG+CGG - chr7_4:56026883-56026902 Msa1164380:intron 40.0%
TTAAATTTCGGTCCCAGTCA+AGG + chr7_4:56026909-56026928 None:intergenic 40.0%
GAGTTCTTTCTTTCTCCACA+AGG - chr7_4:56027544-56027563 Msa1164380:CDS 40.0%
! ACCAGTACTTTTAATCCACG+CGG + chr7_4:56027728-56027747 None:intergenic 40.0%
GAAACTCACGCAGTCAAAAA+TGG - chr7_4:56027809-56027828 Msa1164380:CDS 40.0%
AAAGAAGCCTTAGACCTCAT+TGG - chr7_4:56027833-56027852 Msa1164380:CDS 40.0%
AACCGTAATTCCATCCATGA+CGG + chr7_4:56027906-56027925 None:intergenic 40.0%
TATGCAGAATTTCGCAATGC+AGG - chr7_4:56028213-56028232 Msa1164380:CDS 40.0%
ATGCAGAATTTCGCAATGCA+GGG - chr7_4:56028214-56028233 Msa1164380:CDS 40.0%
GCCAAGCAAAGTTATGGAGA+AGG + chr7_4:56024388-56024407 None:intergenic 45.0%
CGCATTGCCAAGCAAAGTTA+TGG + chr7_4:56024394-56024413 None:intergenic 45.0%
! TCTCCTTCCACTGTGTTTTG+TGG + chr7_4:56024512-56024531 None:intergenic 45.0%
! ACATGGGTGACACCTTTTCT+TGG + chr7_4:56024546-56024565 None:intergenic 45.0%
GACATGCTACCTTCATCACA+TGG + chr7_4:56024563-56024582 None:intergenic 45.0%
GAAACCAAAGACCACGAAGA+AGG - chr7_4:56024601-56024620 Msa1164380:intron 45.0%
! ATTTGGTTCCACCTTCTTCG+TGG + chr7_4:56024615-56024634 None:intergenic 45.0%
AAACATGCTGTGAGGGGAAA+TGG - chr7_4:56025022-56025041 Msa1164380:intron 45.0%
!!! TGCGTTTCTGGCTTTGGTTT+TGG - chr7_4:56025178-56025197 Msa1164380:intron 45.0%
CTACTACAGCACATGAACAG+GGG + chr7_4:56025211-56025230 None:intergenic 45.0%
GCTACTACAGCACATGAACA+GGG + chr7_4:56025212-56025231 None:intergenic 45.0%
TGCTACTACAGCACATGAAC+AGG + chr7_4:56025213-56025232 None:intergenic 45.0%
TGTGCTGTAGTAGCATGAGA+AGG - chr7_4:56025218-56025237 Msa1164380:intron 45.0%
AGTAGCATGAGAAGGAACCT+AGG - chr7_4:56025226-56025245 Msa1164380:intron 45.0%
GCAGCAACTTCAATAGTAGC+AGG - chr7_4:56025860-56025879 Msa1164380:intron 45.0%
ATGGGAAGGCTAAAGCTCAT+AGG + chr7_4:56026151-56026170 None:intergenic 45.0%
TTCGTCGCGCTGTAAAAATG+GGG + chr7_4:56026589-56026608 None:intergenic 45.0%
AGCGCGACGAAATATCGTTA+TGG - chr7_4:56026598-56026617 Msa1164380:intron 45.0%
GCGCGACGAAATATCGTTAT+GGG - chr7_4:56026599-56026618 Msa1164380:intron 45.0%
ATGCAGTTGTACTTGCCTTG+TGG + chr7_4:56027388-56027407 None:intergenic 45.0%
! CCAGTACTTTTAATCCACGC+GGG + chr7_4:56027727-56027746 None:intergenic 45.0%
TGATCCTAGCCATGAGAATG+AGG + chr7_4:56027880-56027899 None:intergenic 45.0%
ACCGTAATTCCATCCATGAC+GGG + chr7_4:56027905-56027924 None:intergenic 45.0%
GTCATGGATGGAATTACGGT+TGG - chr7_4:56027905-56027924 Msa1164380:CDS 45.0%
CATTCATATGTGTGCACTGC+AGG - chr7_4:56028116-56028135 Msa1164380:CDS 45.0%
! AGGTGTCACCCATGTGATGA+AGG - chr7_4:56024551-56024570 Msa1164380:intron 50.0%
ACCAAAGACCACGAAGAAGG+TGG - chr7_4:56024604-56024623 Msa1164380:intron 50.0%
TCCACCTTCTTCGTGGTCTT+TGG + chr7_4:56024608-56024627 None:intergenic 50.0%
GAACGAAACCAAAGACCACG+AGG - chr7_4:56024597-56024616 Msa1164380:intron 50.0%
GAAACCAAAGACCACGAGGA+AGG - chr7_4:56024643-56024662 Msa1164380:intron 50.0%
TCGTCGCGCTGTAAAAATGG+GGG + chr7_4:56026588-56026607 None:intergenic 50.0%
GTCGCAGATTTCGCGATTTC+AGG + chr7_4:56026822-56026841 None:intergenic 50.0%
TTGCAGTAGCACTTGCCTTG+TGG + chr7_4:56027562-56027581 None:intergenic 50.0%
GGGACTCTGTGATGATATGG+AGG + chr7_4:56027707-56027726 None:intergenic 50.0%
! CCCGCGTGGATTAAAAGTAC+TGG - chr7_4:56027724-56027743 Msa1164380:CDS 50.0%
AGCCTTAGACCTCATTGGCA+CGG - chr7_4:56027838-56027857 Msa1164380:CDS 50.0%
AACCGTGCCAATGAGGTCTA+AGG + chr7_4:56027843-56027862 None:intergenic 50.0%
TACGTTCAACCGTGCCAATG+AGG + chr7_4:56027850-56027869 None:intergenic 50.0%
TCGACCTCATTCTCATGGCT+AGG - chr7_4:56027873-56027892 Msa1164380:CDS 50.0%
GCCCGTCATGGATGGAATTA+CGG - chr7_4:56027901-56027920 Msa1164380:CDS 50.0%
! CTGCGCGATTTAGAATACCC+TGG - chr7_4:56028150-56028169 Msa1164380:CDS 50.0%
GAATACCCTGGCCAGATTGT+TGG - chr7_4:56028162-56028181 Msa1164380:CDS 50.0%
AGACACCAACAATCTGGCCA+GGG + chr7_4:56028170-56028189 None:intergenic 50.0%
GACGTGAGACACCAACAATC+TGG + chr7_4:56028176-56028195 None:intergenic 50.0%
ACCAAAGACCACGAGGAAGG+TGG - chr7_4:56024646-56024665 Msa1164380:intron 55.0%
TCCACCTTCCTCGTGGTCTT+TGG + chr7_4:56024650-56024669 None:intergenic 55.0%
TTTCGGTTCCACCTTCCTCG+TGG + chr7_4:56024657-56024676 None:intergenic 55.0%
GGCACCCCTGCATATGAAAC+TGG + chr7_4:56025836-56025855 None:intergenic 55.0%
CGCGGGACTCTGTGATGATA+TGG + chr7_4:56027710-56027729 None:intergenic 55.0%
TATCATCACAGAGTCCCGCG+TGG - chr7_4:56027710-56027729 Msa1164380:CDS 55.0%
AGGATCATGCCCGTCATGGA+TGG - chr7_4:56027893-56027912 Msa1164380:CDS 55.0%
GAGACACCAACAATCTGGCC+AGG + chr7_4:56028171-56028190 None:intergenic 55.0%
GGCTAGGATCATGCCCGTCA+TGG - chr7_4:56027889-56027908 Msa1164380:CDS 60.0%
TACGCGATCGCGGCCTTGAC+TGG - chr7_4:56026893-56026912 Msa1164380:intron 65.0%
ACGCGATCGCGGCCTTGACT+GGG - chr7_4:56026894-56026913 Msa1164380:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 56024275 56028323 56024275 ID=Msa1164380;Name=Msa1164380
chr7_4 mRNA 56024275 56028323 56024275 ID=Msa1164380-mRNA-1;Parent=Msa1164380;Name=Msa1164380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|402
chr7_4 exon 56027503 56028323 56027503 ID=Msa1164380-mRNA-1:exon:16597;Parent=Msa1164380-mRNA-1
chr7_4 exon 56024676 56024877 56024676 ID=Msa1164380-mRNA-1:exon:16596;Parent=Msa1164380-mRNA-1
chr7_4 exon 56024275 56024460 56024275 ID=Msa1164380-mRNA-1:exon:16595;Parent=Msa1164380-mRNA-1
chr7_4 CDS 56027503 56028323 56027503 ID=Msa1164380-mRNA-1:cds;Parent=Msa1164380-mRNA-1
chr7_4 CDS 56024676 56024877 56024676 ID=Msa1164380-mRNA-1:cds;Parent=Msa1164380-mRNA-1
chr7_4 CDS 56024275 56024460 56024275 ID=Msa1164380-mRNA-1:cds;Parent=Msa1164380-mRNA-1
Gene Sequence

>Msa1164380

ATGTTGCAGAACAATCAAAATACTGAAGCCATGACGAAGGAACAGAAATTTGCTATCACTAAGGAGAAGATCAAAGGATACATGGAAAAAGCAAAAACGGCGCCACTCAACCTTCTCCATAACTTTGCTTGGCAATGCGTGATAGCTAAACATGCTCCACAATTTTATTCTGAAGAAGAGTTAGCACAAATAAAGAAACACAGTCAACTTGTTCTCCAAGAAACTCAAAATATTCCACAAAACACAGTGGAAGGAGAAGTAGCGAATACCAAGAAAAGGTGTCACCCATGTGATGAAGGTAGCATGTCTTATGCGGAAAGAAGAACGAAACCAAAGACCACGAAGAAGGTGGAACCAAATAAAAGAACGAAACCAAAGACCACGAGGAAGGTGGAACCGAAAAAACAAGATAAGAAAAATTTGGCGTTACCTCCGCCAATATTACCTATTAATGTCAAGAACAAGATCAAGGAGTTGAATGGCACTGATATCAGATATATCATGTCAAAGAAATTGTTTGCGTCAGATATCGATGAAGGCCAAAATCGTCTTTTAATGCCACTTAAAGAAGACGAACTTGGTTTTCTCACCAAGACAGAAAAGGAGACTTTAGATACAAAGGATAAAAACGGTAAACCGGTTGGTTTAGAAGTGATTGTGTTGGACCCTTATTTTAGAAGCTTCACAATGTGCTTCAAGAAGTGGAGAATGACTGATAAATGGGTTTACAGTCTTATACAAAATTGGAAACATGCTGTGAGGGGAAATGGTTTTGAAATAGGTCAAAAACTCAACATTTGGTCATTTAGGGTCAAGGACAAAGTCCCGCGTGGATTAAAAGTACTGGTTGTGGAAGATGATGATCTTGTTCGAATGGCTCATAGAGATATCTTGACATTACTTGGTGTGGAAACTCACGCAGTCAAAAATGGTAAAGAAGCCTTAGACCTCATTGGCACGGTTGAACGTAAATTCGACCTCATTCTCATGGCTAGGATCATGCCCGTCATGGATGGAATTACGGCAACAAAGAAGCTGCGCGATTTAGAATACCCTGGCCAGATTGTTGGTGTCTCACGTCGCCTTACTAATGATGAATATGCAGAATTTCGCAATGCAGGGCTAGATGATCTACATCATGAAGATGGAATACCCTTGCACTATCATATGTTGAAACTAATTTTGAAAAGGGTTCTTCCTGTCAACTAG

Protein sequence

>Msa1164380

MLQNNQNTEAMTKEQKFAITKEKIKGYMEKAKTAPLNLLHNFAWQCVIAKHAPQFYSEEELAQIKKHSQLVLQETQNIPQNTVEGEVANTKKRCHPCDEGSMSYAERRTKPKTTKKVEPNKRTKPKTTRKVEPKKQDKKNLALPPPILPINVKNKIKELNGTDIRYIMSKKLFASDIDEGQNRLLMPLKEDELGFLTKTEKETLDTKDKNGKPVGLEVIVLDPYFRSFTMCFKKWRMTDKWVYSLIQNWKHAVRGNGFEIGQKLNIWSFRVKDKVPRGLKVLVVEDDDLVRMAHRDILTLLGVETHAVKNGKEALDLIGTVERKFDLILMARIMPVMDGITATKKLRDLEYPGQIVGVSRRLTNDEYAEFRNAGLDDLHHEDGIPLHYHMLKLILKRVLPVN*