Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165600 | GAU49399.1 | 58.284 | 338 | 81 | 5 | 1 | 280 | 1 | 336 | 2.93e-121 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165600 | sp|Q9FNY2|DPB_ARATH | 52.399 | 271 | 87 | 5 | 2 | 232 | 28 | 296 | 8.18e-80 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165600 | A0A2Z6PQL5 | 58.284 | 338 | 81 | 5 | 1 | 280 | 1 | 336 | 1.40e-121 | 362 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1165600 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165600 | MtrunA17_Chr4g0039751 | 58.407 | 339 | 80 | 6 | 1 | 280 | 1 | 337 | 3.66e-123 | 357 |
| Msa1165600 | MtrunA17_Chr4g0039741 | 57.053 | 319 | 93 | 7 | 2 | 280 | 21 | 335 | 1.84e-113 | 332 |
| Msa1165600 | MtrunA17_Chr7g0269641 | 68.229 | 192 | 33 | 2 | 1 | 164 | 1 | 192 | 2.50e-80 | 242 |
| Msa1165600 | MtrunA17_Chr7g0269651 | 93.519 | 108 | 7 | 0 | 212 | 319 | 11 | 118 | 2.44e-62 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165600 | AT5G03415.2 | 53.962 | 265 | 86 | 5 | 2 | 232 | 28 | 290 | 9.76e-83 | 255 |
| Msa1165600 | AT5G03415.1 | 52.399 | 271 | 87 | 5 | 2 | 232 | 28 | 296 | 8.32e-81 | 251 |
| Msa1165600 | AT5G02470.3 | 40.323 | 186 | 99 | 6 | 51 | 227 | 60 | 242 | 1.35e-41 | 146 |
| Msa1165600 | AT5G02470.1 | 40.323 | 186 | 99 | 6 | 51 | 227 | 60 | 242 | 1.35e-41 | 146 |
| Msa1165600 | AT5G02470.2 | 40.323 | 186 | 99 | 6 | 51 | 227 | 60 | 242 | 1.35e-41 | 146 |
Find 80 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGTAGCTTATTGATTT+AGG | 0.131004 | 7_4:+57546470 | Msa1165600:five_prime_UTR |
| CAGGCATCACCTCCGCTTTC+TGG | 0.140961 | 7_4:+57549589 | Msa1165600:CDS |
| TCAATTTCCACATGACATTT+TGG | 0.179498 | 7_4:-57550434 | None:intergenic |
| GTCAGGCTTGCATCAGTTGC+AGG | 0.260541 | 7_4:+57549531 | Msa1165600:CDS |
| AACTGTAGCTTATTGATTTA+GGG | 0.280597 | 7_4:+57546471 | Msa1165600:five_prime_UTR |
| ATCTGATTCAAGAGCAGTTT+TGG | 0.287261 | 7_4:-57546591 | None:intergenic |
| CTTGTTCCTCAAACTCCTTT+AGG | 0.292754 | 7_4:-57548271 | None:intergenic |
| CAGTTTCAAGCGTGTCAATT+AGG | 0.323437 | 7_4:+57549563 | Msa1165600:CDS |
| GTTGGAGAAGGTAGAAAGTA+AGG | 0.363432 | 7_4:+57547467 | Msa1165600:CDS |
| ATATATTGCATCAAGTTTGT+AGG | 0.366918 | 7_4:+57548444 | Msa1165600:intron |
| TCCGCTTTCTGGAATACTTA+AGG | 0.378685 | 7_4:+57549600 | Msa1165600:CDS |
| GTCGGCTCGCTCCGGCTAGA+TGG | 0.379241 | 7_4:-57546722 | None:intergenic |
| TTGTTGCGAAAGTCGATAGA+TGG | 0.385930 | 7_4:+57546642 | Msa1165600:five_prime_UTR |
| AAATGAAAAGGACAATGATT+TGG | 0.397321 | 7_4:-57546532 | None:intergenic |
| GGGGAAGGTTCTAGCTTGTC+AGG | 0.408012 | 7_4:+57549514 | Msa1165600:CDS |
| GGGGACAAAACACTATTCAT+TGG | 0.417434 | 7_4:-57547824 | None:intergenic |
| TCAAAATAGTCCTAAACCTT+AGG | 0.426376 | 7_4:+57546432 | Msa1165600:five_prime_UTR |
| TGTTTGTTAGGAAAGCTAAC+TGG | 0.430033 | 7_4:+57550284 | Msa1165600:intron |
| AAAGATAAATCTCCGCTTGA+AGG | 0.440338 | 7_4:-57548516 | None:intergenic |
| GAGAACATTCAGAACATCAT+AGG | 0.447978 | 7_4:-57547996 | None:intergenic |
| AATGAGCAATTATATAGATC+AGG | 0.460541 | 7_4:+57548489 | Msa1165600:CDS |
| AAGCGTGTCAATTAGGCCTC+AGG | 0.469004 | 7_4:+57549570 | Msa1165600:CDS |
| ATCCTACCTAAAGGAGTTTG+AGG | 0.469730 | 7_4:+57548265 | Msa1165600:CDS |
| CTAAAAGTTAAGTGTGGGGT+TGG | 0.482389 | 7_4:+57546311 | None:intergenic |
| TAGTGCTATTGAGAAGCTAA+AGG | 0.482438 | 7_4:+57548078 | Msa1165600:CDS |
| GCAGCGGCTGTCTGCGTCGT+CGG | 0.497935 | 7_4:-57546740 | None:intergenic |
| GCAAACTAAAAGTTAAGTGT+GGG | 0.499822 | 7_4:+57546306 | None:intergenic |
| GAAAGTCGATAGATGGAAGA+TGG | 0.500686 | 7_4:+57546649 | Msa1165600:exon |
| TGTACCTGAACCAGAACAAA+AGG | 0.501925 | 7_4:-57548540 | None:intergenic |
| CTATGGTGCACAAAATGAAA+AGG | 0.506225 | 7_4:-57546544 | None:intergenic |
| GGCAATGGATATTATTTCCA+AGG | 0.507516 | 7_4:+57548021 | Msa1165600:CDS |
| ATTCAACAGATCGAATGTCT+AGG | 0.511456 | 7_4:+57548215 | Msa1165600:intron |
| TGCAACTGTTGAACTTGAAG+TGG | 0.513525 | 7_4:+57549083 | Msa1165600:CDS |
| TTCAACAGATCGAATGTCTA+GGG | 0.521141 | 7_4:+57548216 | Msa1165600:intron |
| CATCATCATGTATGTCAAGA+TGG | 0.522280 | 7_4:-57546774 | None:intergenic |
| ACTTACCATTGCTGTAATGA+TGG | 0.533611 | 7_4:-57550319 | None:intergenic |
| CGCAAACTAAAAGTTAAGTG+TGG | 0.533862 | 7_4:+57546305 | None:intergenic |
| ACACTCAATGTTACGGAAGG+AGG | 0.535766 | 7_4:+57549493 | Msa1165600:CDS |
| TATTGCTACACTCAATGTTA+CGG | 0.535816 | 7_4:+57549486 | Msa1165600:CDS |
| AAGCAAAGTATCCTACCTAA+AGG | 0.541642 | 7_4:+57548256 | Msa1165600:CDS |
| CACTCAATGTTACGGAAGGA+GGG | 0.556476 | 7_4:+57549494 | Msa1165600:CDS |
| TTGGAGAAGGTAGAAAGTAA+GGG | 0.559901 | 7_4:+57547468 | Msa1165600:CDS |
| AAAGTCGATAGATGGAAGAT+GGG | 0.561763 | 7_4:+57546650 | Msa1165600:exon |
| ATTGCTCATTTCGTTGAACA+AGG | 0.562679 | 7_4:-57548476 | None:intergenic |
| ACCTTAAGTATTCCAGAAAG+CGG | 0.563806 | 7_4:-57549601 | None:intergenic |
| AATCATGTGTAGATGAAAGC+AGG | 0.569304 | 7_4:+57546687 | Msa1165600:CDS |
| GAACATCATAGGCCCTTCGA+CGG | 0.570623 | 7_4:-57547985 | None:intergenic |
| TGATGTTCTGAATGTTCTCA+TGG | 0.572407 | 7_4:+57548000 | Msa1165600:CDS |
| TTTAGCTTCTCAATAGCACT+AGG | 0.575236 | 7_4:-57548076 | None:intergenic |
| CGAAGGAAGAAATAATGCTA+TGG | 0.580934 | 7_4:-57546561 | None:intergenic |
| GACATACATGATGATGATGC+AGG | 0.583166 | 7_4:+57546781 | Msa1165600:CDS |
| TTCCTCAAACTCCTTTAGGT+AGG | 0.587051 | 7_4:-57548267 | None:intergenic |
| TTCAGATCCAAAATGTCATG+TGG | 0.587452 | 7_4:+57550427 | Msa1165600:intron |
| CTACTATGTGCTCAAAGCAA+TGG | 0.590968 | 7_4:+57549438 | Msa1165600:CDS |
| GATGGTTAATTTGAGAGCAG+CGG | 0.591635 | 7_4:-57546756 | None:intergenic |
| GATGATGATGCAGGATCACA+AGG | 0.593414 | 7_4:+57546790 | Msa1165600:CDS |
| TACAACCATCATTACAGCAA+TGG | 0.598226 | 7_4:+57550314 | Msa1165600:CDS |
| GTAGATGAAAGCAGGAGTGC+TGG | 0.600296 | 7_4:+57546695 | Msa1165600:CDS |
| GTTGTATGCAGTGTTGGAGA+AGG | 0.602504 | 7_4:+57547455 | Msa1165600:intron |
| AATGTTACGGAAGGAGGGGA+AGG | 0.604293 | 7_4:+57549499 | Msa1165600:CDS |
| TCTGAATGTTCTCATGGCAA+TGG | 0.604838 | 7_4:+57548006 | Msa1165600:CDS |
| AAAGGACAATGATTTGGCAG+AGG | 0.605040 | 7_4:-57546526 | None:intergenic |
| ACCTTAGGAAAAGTTAGAAG+AGG | 0.610254 | 7_4:+57546447 | Msa1165600:five_prime_UTR |
| AGCTTCTCAATAGCACTAGG+AGG | 0.614094 | 7_4:-57548073 | None:intergenic |
| CTAGGTGGCAGATGAACTTG+TGG | 0.615812 | 7_4:+57547787 | Msa1165600:intron |
| ACTCAATGTTACGGAAGGAG+GGG | 0.616617 | 7_4:+57549495 | Msa1165600:CDS |
| GGGAAGAACAACTTTCAATG+AGG | 0.618421 | 7_4:+57547488 | Msa1165600:CDS |
| GGAAGATGGGAACGCGACTG+CGG | 0.633565 | 7_4:+57546663 | Msa1165600:exon |
| ATTGACACGCTTGAAACTGA+AGG | 0.637612 | 7_4:-57549559 | None:intergenic |
| AGATCAGGAAATCCTTCAAG+CGG | 0.637885 | 7_4:+57548504 | Msa1165600:CDS |
| GCTACACTCAATGTTACGGA+AGG | 0.641637 | 7_4:+57549490 | Msa1165600:CDS |
| GGAAATTGATAGTCTTGCTA+AGG | 0.641726 | 7_4:+57550448 | Msa1165600:CDS |
| TTAAGTAACTCGATATAGTG+AGG | 0.647838 | 7_4:+57546399 | Msa1165600:five_prime_UTR |
| AACGTATTCAGAATTCTCCA+AGG | 0.648925 | 7_4:-57550489 | None:intergenic |
| CAAACTAAAAGTTAAGTGTG+GGG | 0.655209 | 7_4:+57546307 | None:intergenic |
| TCAAGTTCAACAGTTGCATG+AGG | 0.655545 | 7_4:-57549078 | None:intergenic |
| GAAAGCGGAGGTGATGCCTG+AGG | 0.658645 | 7_4:-57549586 | None:intergenic |
| GACACGCTTGAAACTGAAGG+AGG | 0.686824 | 7_4:-57549556 | None:intergenic |
| TTAAGTATTCCAGAAAGCGG+AGG | 0.697488 | 7_4:-57549598 | None:intergenic |
| AGTGTAGCAATATCTCTCCG+AGG | 0.743133 | 7_4:-57549475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGAATGATAAAAAA+AGG | - | chr7_4:57546624-57546643 | None:intergenic | 10.0% |
| !! | TAGTACAATATATTAATATT+TGG | - | chr7_4:57547030-57547049 | None:intergenic | 10.0% |
| !!! | TTTATTGCTATTAAACTTTT+GGG | + | chr7_4:57546881-57546900 | Msa1165600:intron | 15.0% |
| !! | AATAATAAGAATTATGAAAG+AGG | - | chr7_4:57547719-57547738 | None:intergenic | 15.0% |
| !!! | ATGTGTTATTTTTATATTCT+AGG | + | chr7_4:57547769-57547788 | Msa1165600:intron | 15.0% |
| !!! | ATATCATTTTTTCTTGTTTA+GGG | + | chr7_4:57549660-57549679 | Msa1165600:intron | 15.0% |
| !! | ATCTAATAAATATGTTTGTT+AGG | + | chr7_4:57550272-57550291 | Msa1165600:intron | 15.0% |
| !!! | GTTTATTGCTATTAAACTTT+TGG | + | chr7_4:57546880-57546899 | Msa1165600:intron | 20.0% |
| !! | TTATTCAGTTACTTATTTCA+GGG | + | chr7_4:57546932-57546951 | Msa1165600:intron | 20.0% |
| !! | ATAAGTTCTTAATAAGTCAA+CGG | + | chr7_4:57547079-57547098 | Msa1165600:intron | 20.0% |
| !! | AAAAATCAAAGAAAGACTTT+AGG | - | chr7_4:57547221-57547240 | None:intergenic | 20.0% |
| !! | CTGAATAAAAAATTAGTTGA+AGG | - | chr7_4:57547628-57547647 | None:intergenic | 20.0% |
| !!! | CTTCAACTAATTTTTTATTC+AGG | + | chr7_4:57547626-57547645 | Msa1165600:intron | 20.0% |
| !! | TCAAAGTCAAGAAATATATT+AGG | - | chr7_4:57547750-57547769 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTATATTCTAGG+TGG | + | chr7_4:57547772-57547791 | Msa1165600:intron | 20.0% |
| !!! | AATTTTGAAACTGTTTGTAA+AGG | - | chr7_4:57547866-57547885 | None:intergenic | 20.0% |
| !!! | TACTGTAGATTTACTTTTTT+GGG | + | chr7_4:57547920-57547939 | Msa1165600:intron | 20.0% |
| !!! | TTGTATTTTCTTTTTATCCT+TGG | - | chr7_4:57548041-57548060 | None:intergenic | 20.0% |
| !! | AGGATAAAAAGAAAATACAA+TGG | + | chr7_4:57548041-57548060 | Msa1165600:CDS | 20.0% |
| !! | TAAAAAGAAAATACAATGGA+AGG | + | chr7_4:57548045-57548064 | Msa1165600:CDS | 20.0% |
| !! | AAAAAGAAAATACAATGGAA+GGG | + | chr7_4:57548046-57548065 | Msa1165600:CDS | 20.0% |
| !! | TTAATCCTAAAATACAATCA+AGG | + | chr7_4:57548173-57548192 | Msa1165600:intron | 20.0% |
| !!! | TGAATAAAACTGACTTAAAA+TGG | - | chr7_4:57548200-57548219 | None:intergenic | 20.0% |
| !! | CACTCTAATAGATTTAATAT+GGG | + | chr7_4:57548305-57548324 | Msa1165600:intron | 20.0% |
| !! | ACTCTAATAGATTTAATATG+GGG | + | chr7_4:57548306-57548325 | Msa1165600:intron | 20.0% |
| !!! | TTCTGAAAAAATAGCAAAAA+AGG | - | chr7_4:57548582-57548601 | None:intergenic | 20.0% |
| !! | GTGTGATAATTAGATTATAT+TGG | + | chr7_4:57548636-57548655 | Msa1165600:intron | 20.0% |
| !! | AAAACATATGCTTAATTAGT+TGG | + | chr7_4:57548673-57548692 | Msa1165600:intron | 20.0% |
| !! | AGAGGAAAAAAAATATTTCT+AGG | - | chr7_4:57548763-57548782 | None:intergenic | 20.0% |
| !! | TTGAGCTTATATAAATCTAA+AGG | - | chr7_4:57548897-57548916 | None:intergenic | 20.0% |
| !!! | TTGTTCATTTTGATTTCAAT+AGG | + | chr7_4:57549135-57549154 | Msa1165600:intron | 20.0% |
| !!! | GATATCATTTTTTCTTGTTT+AGG | + | chr7_4:57549659-57549678 | Msa1165600:intron | 20.0% |
| !! | AAAAGTCATAGCAAAATATA+TGG | - | chr7_4:57549748-57549767 | None:intergenic | 20.0% |
| !!! | GAAATTAATCCTATTTTTGT+TGG | - | chr7_4:57549805-57549824 | None:intergenic | 20.0% |
| !! | AATAGGATTAATTTCAGAAT+TGG | + | chr7_4:57549810-57549829 | Msa1165600:intron | 20.0% |
| !! | TTGTCTTGTATTATTTACTA+CGG | + | chr7_4:57549852-57549871 | Msa1165600:intron | 20.0% |
| !! | ATTTACCTGTAATTTCTATA+GGG | + | chr7_4:57549959-57549978 | Msa1165600:intron | 20.0% |
| !!! | CATGAACTTAGTTTTCATAT+AGG | - | chr7_4:57546377-57546396 | None:intergenic | 25.0% |
| !!! | AAACTGTAGCTTATTGATTT+AGG | + | chr7_4:57546470-57546489 | Msa1165600:five_prime_UTR | 25.0% |
| !!! | AACTGTAGCTTATTGATTTA+GGG | + | chr7_4:57546471-57546490 | Msa1165600:five_prime_UTR | 25.0% |
| ! | AAATGAAAAGGACAATGATT+TGG | - | chr7_4:57546535-57546554 | None:intergenic | 25.0% |
| ! | TACATTTATTAGAAGCTGAA+AGG | - | chr7_4:57546841-57546860 | None:intergenic | 25.0% |
| ! | CTTATTCAGTTACTTATTTC+AGG | + | chr7_4:57546931-57546950 | Msa1165600:intron | 25.0% |
| !! | CTTTCATTCATGAACTATTT+TGG | + | chr7_4:57546967-57546986 | Msa1165600:intron | 25.0% |
| !!! | CATGAACTATTTTGGAAAAA+CGG | + | chr7_4:57546975-57546994 | Msa1165600:intron | 25.0% |
| ! | TAGAAAAATAAGAGTAGAAG+AGG | + | chr7_4:57547323-57547342 | Msa1165600:intron | 25.0% |
| ! | AGAAAAATAAGAGTAGAAGA+GGG | + | chr7_4:57547324-57547343 | Msa1165600:intron | 25.0% |
| ! | AAAACCTTTCATGCTAATTT+GGG | - | chr7_4:57547354-57547373 | None:intergenic | 25.0% |
| ! | AAAAACCTTTCATGCTAATT+TGG | - | chr7_4:57547355-57547374 | None:intergenic | 25.0% |
| ! | TGAACAGTATGTAACAAAAT+TGG | - | chr7_4:57547394-57547413 | None:intergenic | 25.0% |
| !!! | TTCATTGACTTTTTTCTTTC+TGG | + | chr7_4:57547410-57547429 | Msa1165600:intron | 25.0% |
| !!! | ATTTTTTATTCAGGAACTTG+TGG | + | chr7_4:57547635-57547654 | Msa1165600:intron | 25.0% |
| ! | AAGGAAAAACAACCTTATTA+GGG | - | chr7_4:57547847-57547866 | None:intergenic | 25.0% |
| ! | AAAGGAAAAACAACCTTATT+AGG | - | chr7_4:57547848-57547867 | None:intergenic | 25.0% |
| !!! | GTACTGTAGATTTACTTTTT+TGG | + | chr7_4:57547919-57547938 | Msa1165600:intron | 25.0% |
| !!! | ACTGTAGATTTACTTTTTTG+GGG | + | chr7_4:57547921-57547940 | Msa1165600:intron | 25.0% |
| ! | TTAAATCTATTAGAGTGGAA+TGG | - | chr7_4:57548302-57548321 | None:intergenic | 25.0% |
| ! | CCATATTAAATCTATTAGAG+TGG | - | chr7_4:57548307-57548326 | None:intergenic | 25.0% |
| ! | CCACTCTAATAGATTTAATA+TGG | + | chr7_4:57548304-57548323 | Msa1165600:intron | 25.0% |
| ! | ATATATTGCATCAAGTTTGT+AGG | + | chr7_4:57548444-57548463 | Msa1165600:intron | 25.0% |
| ! | AATGAGCAATTATATAGATC+AGG | + | chr7_4:57548489-57548508 | Msa1165600:CDS | 25.0% |
| !! | TTTATCTTTACCTTTTGTTC+TGG | + | chr7_4:57548530-57548549 | Msa1165600:CDS | 25.0% |
| ! | AAAAAGGTAGATAATGATGA+TGG | - | chr7_4:57548566-57548585 | None:intergenic | 25.0% |
| !! | AATGTTGTTCAATTTTACCT+TGG | + | chr7_4:57548603-57548622 | Msa1165600:intron | 25.0% |
| !! | CTAATTAAGCATATGTTTTG+TGG | - | chr7_4:57548672-57548691 | None:intergenic | 25.0% |
| !!! | ATATTTTTTTTCCTCTTCTG+TGG | + | chr7_4:57548767-57548786 | Msa1165600:intron | 25.0% |
| ! | ACACTACTTGATACTTAATT+AGG | - | chr7_4:57549214-57549233 | None:intergenic | 25.0% |
| !!! | TTAAGAAAGTACTTGATGAA+TGG | - | chr7_4:57549709-57549728 | None:intergenic | 25.0% |
| ! | GATTAATTTCAGAATTGGTT+AGG | + | chr7_4:57549815-57549834 | Msa1165600:intron | 25.0% |
| ! | GATGACATTCAAAGAAAATT+GGG | - | chr7_4:57549926-57549945 | None:intergenic | 25.0% |
| ! | TGATGACATTCAAAGAAAAT+TGG | - | chr7_4:57549927-57549946 | None:intergenic | 25.0% |
| ! | GATTTACCTGTAATTTCTAT+AGG | + | chr7_4:57549958-57549977 | Msa1165600:intron | 25.0% |
| ! | AAAAAATGACACTAATCCTT+GGG | + | chr7_4:57550121-57550140 | Msa1165600:intron | 25.0% |
| !!! | ACAATGTTGAAAATTTTAGC+TGG | - | chr7_4:57550230-57550249 | None:intergenic | 25.0% |
| !!! | ATTTACAGTTTTATTGGTGA+CGG | - | chr7_4:57550397-57550416 | None:intergenic | 25.0% |
| !!! | GCAATCATTTACAGTTTTAT+TGG | - | chr7_4:57550403-57550422 | None:intergenic | 25.0% |
| TTAAGTAACTCGATATAGTG+AGG | + | chr7_4:57546399-57546418 | Msa1165600:five_prime_UTR | 30.0% | |
| TCAAAATAGTCCTAAACCTT+AGG | + | chr7_4:57546432-57546451 | Msa1165600:five_prime_UTR | 30.0% | |
| ! | TCTAACTTTTCCTAAGGTTT+AGG | - | chr7_4:57546445-57546464 | None:intergenic | 30.0% |
| ACAATCATACAATTGACACT+AGG | - | chr7_4:57547184-57547203 | None:intergenic | 30.0% | |
| TAGTGTCAATTGTATGATTG+TGG | + | chr7_4:57547183-57547202 | Msa1165600:intron | 30.0% | |
| AGTGTCAATTGTATGATTGT+GGG | + | chr7_4:57547184-57547203 | Msa1165600:intron | 30.0% | |
| ACAGTAGCAATAAGAAAAAG+AGG | + | chr7_4:57547285-57547304 | Msa1165600:intron | 30.0% | |
| CAGTAGCAATAAGAAAAAGA+GGG | + | chr7_4:57547286-57547305 | Msa1165600:intron | 30.0% | |
| AGTAGCAATAAGAAAAAGAG+GGG | + | chr7_4:57547287-57547306 | Msa1165600:intron | 30.0% | |
| AAACCTTTCATGCTAATTTG+GGG | - | chr7_4:57547353-57547372 | None:intergenic | 30.0% | |
| GTAACAAAATTGGTCAAACA+AGG | - | chr7_4:57547384-57547403 | None:intergenic | 30.0% | |
| TACAACCAGCAATAAATTAG+AGG | - | chr7_4:57547441-57547460 | None:intergenic | 30.0% | |
| AGGAAAAACAACCTTATTAG+GGG | - | chr7_4:57547846-57547865 | None:intergenic | 30.0% | |
| !!! | CTGTAGATTTACTTTTTTGG+GGG | + | chr7_4:57547922-57547941 | Msa1165600:intron | 30.0% |
| !!! | TGTAGATTTACTTTTTTGGG+GGG | + | chr7_4:57547923-57547942 | Msa1165600:intron | 30.0% |
| AAGTTACAACTTGAGATTGT+GGG | - | chr7_4:57548108-57548127 | None:intergenic | 30.0% | |
| AAAGTTACAACTTGAGATTG+TGG | - | chr7_4:57548109-57548128 | None:intergenic | 30.0% | |
| ! | ATGGTCCTTGATTGTATTTT+AGG | - | chr7_4:57548181-57548200 | None:intergenic | 30.0% |
| TGCAAACACTATAAAATGGA+AGG | + | chr7_4:57548830-57548849 | Msa1165600:intron | 30.0% | |
| ATAAGCTCAATGCTATGTTA+TGG | + | chr7_4:57548907-57548926 | Msa1165600:intron | 30.0% | |
| AAGCTTCAATTTCCTTATCT+AGG | + | chr7_4:57549160-57549179 | Msa1165600:intron | 30.0% | |
| GTGTCATAAAATCAAGAAAG+TGG | + | chr7_4:57549230-57549249 | Msa1165600:intron | 30.0% | |
| GAGCTAGTTAATCCTATTTA+AGG | + | chr7_4:57549252-57549271 | Msa1165600:intron | 30.0% | |
| ! | TCTCTACTTGAAAACTCTTT+TGG | - | chr7_4:57549292-57549311 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTAGAGAAGTTCT+GGG | + | chr7_4:57549298-57549317 | Msa1165600:intron | 30.0% |
| TATTGCTACACTCAATGTTA+CGG | + | chr7_4:57549486-57549505 | Msa1165600:CDS | 30.0% | |
| ATGATATCACTTACTACAAC+GGG | - | chr7_4:57549772-57549791 | None:intergenic | 30.0% | |
| CATGATATCACTTACTACAA+CGG | - | chr7_4:57549773-57549792 | None:intergenic | 30.0% | |
| AAATGCCCTATAGAAATTAC+AGG | - | chr7_4:57549967-57549986 | None:intergenic | 30.0% | |
| !! | TGTTGCAATTGTTGTTTGTT+TGG | + | chr7_4:57550019-57550038 | Msa1165600:intron | 30.0% |
| AATCCTCATCTTAATTCTCA+TGG | + | chr7_4:57550095-57550114 | Msa1165600:intron | 30.0% | |
| GAAAAAATGACACTAATCCT+TGG | + | chr7_4:57550120-57550139 | Msa1165600:intron | 30.0% | |
| ! | CTGATATCGTTAGTTCTTTA+GGG | + | chr7_4:57550164-57550183 | Msa1165600:intron | 30.0% |
| ! | TCAATTTCCACATGACATTT+TGG | - | chr7_4:57550437-57550456 | None:intergenic | 30.0% |
| ACCTTAGGAAAAGTTAGAAG+AGG | + | chr7_4:57546447-57546466 | Msa1165600:five_prime_UTR | 35.0% | |
| ! | TCCTCTTCTAACTTTTCCTA+AGG | - | chr7_4:57546451-57546470 | None:intergenic | 35.0% |
| CTATGGTGCACAAAATGAAA+AGG | - | chr7_4:57546547-57546566 | None:intergenic | 35.0% | |
| CGAAGGAAGAAATAATGCTA+TGG | - | chr7_4:57546564-57546583 | None:intergenic | 35.0% | |
| ! | ATCTGATTCAAGAGCAGTTT+TGG | - | chr7_4:57546594-57546613 | None:intergenic | 35.0% |
| AAAGTCGATAGATGGAAGAT+GGG | + | chr7_4:57546650-57546669 | Msa1165600:exon | 35.0% | |
| AATCATGTGTAGATGAAAGC+AGG | + | chr7_4:57546687-57546706 | Msa1165600:CDS | 35.0% | |
| CATCATCATGTATGTCAAGA+TGG | - | chr7_4:57546777-57546796 | None:intergenic | 35.0% | |
| AGAAGCTGAAAGGATTAGAT+AGG | - | chr7_4:57546831-57546850 | None:intergenic | 35.0% | |
| ATGCATAACCAATTCAGAGA+AGG | - | chr7_4:57547156-57547175 | None:intergenic | 35.0% | |
| ! | TATTTTTCTATCCCGTCTGT+TGG | - | chr7_4:57547313-57547332 | None:intergenic | 35.0% |
| AACCTTTCATGCTAATTTGG+GGG | - | chr7_4:57547352-57547371 | None:intergenic | 35.0% | |
| TTCTGCCTCTAATTTATTGC+TGG | + | chr7_4:57547433-57547452 | Msa1165600:intron | 35.0% | |
| TTGGAGAAGGTAGAAAGTAA+GGG | + | chr7_4:57547468-57547487 | Msa1165600:CDS | 35.0% | |
| GAACAACTTTCAATGAGGTT+AGG | + | chr7_4:57547493-57547512 | Msa1165600:intron | 35.0% | |
| ! | TAGTGTTTTGTCCCCTAATA+AGG | + | chr7_4:57547832-57547851 | Msa1165600:CDS | 35.0% |
| GAGAACATTCAGAACATCAT+AGG | - | chr7_4:57547999-57548018 | None:intergenic | 35.0% | |
| ! | TGATGTTCTGAATGTTCTCA+TGG | + | chr7_4:57548000-57548019 | Msa1165600:CDS | 35.0% |
| GGCAATGGATATTATTTCCA+AGG | + | chr7_4:57548021-57548040 | Msa1165600:CDS | 35.0% | |
| ! | TTTAGCTTCTCAATAGCACT+AGG | - | chr7_4:57548079-57548098 | None:intergenic | 35.0% |
| ! | TAGTGCTATTGAGAAGCTAA+AGG | + | chr7_4:57548078-57548097 | Msa1165600:CDS | 35.0% |
| !!! | TGTAACTTTTTTTCCCCATG+TGG | + | chr7_4:57548120-57548139 | Msa1165600:intron | 35.0% |
| TTAATTCAGAACATCACTGC+AGG | - | chr7_4:57548157-57548176 | None:intergenic | 35.0% | |
| ATTCAACAGATCGAATGTCT+AGG | + | chr7_4:57548215-57548234 | Msa1165600:intron | 35.0% | |
| TTCAACAGATCGAATGTCTA+GGG | + | chr7_4:57548216-57548235 | Msa1165600:intron | 35.0% | |
| ! | AAGCAAAGTATCCTACCTAA+AGG | + | chr7_4:57548256-57548275 | Msa1165600:CDS | 35.0% |
| AAACACAAGACACTACAGAA+AGG | - | chr7_4:57548400-57548419 | None:intergenic | 35.0% | |
| ATTGCTCATTTCGTTGAACA+AGG | - | chr7_4:57548479-57548498 | None:intergenic | 35.0% | |
| AAAGATAAATCTCCGCTTGA+AGG | - | chr7_4:57548519-57548538 | None:intergenic | 35.0% | |
| !!! | TTTACCTTTTGTTCTGGTTC+AGG | + | chr7_4:57548536-57548555 | Msa1165600:CDS | 35.0% |
| ATCACACAATTGAAGATCCA+AGG | - | chr7_4:57548623-57548642 | None:intergenic | 35.0% | |
| CAGCTGCAAACACTATAAAA+TGG | + | chr7_4:57548826-57548845 | Msa1165600:intron | 35.0% | |
| GCTATGTTATGGAGAATTCT+TGG | + | chr7_4:57548918-57548937 | Msa1165600:intron | 35.0% | |
| ! | TTAGAAACTTTTCCGATCTG+TGG | - | chr7_4:57548944-57548963 | None:intergenic | 35.0% |
| !! | ACAAAATCTGTTTTTCCTGC+TGG | + | chr7_4:57548979-57548998 | Msa1165600:intron | 35.0% |
| ACAGTATACAGACCTAGATA+AGG | - | chr7_4:57549175-57549194 | None:intergenic | 35.0% | |
| ! | CTACTTGAAAACTCTTTTGG+TGG | - | chr7_4:57549289-57549308 | None:intergenic | 35.0% |
| !!! | GTTTTCAAGTAGAGAAGTTC+TGG | + | chr7_4:57549297-57549316 | Msa1165600:intron | 35.0% |
| ! | TGGAATTTTGTGATAGACCT+CGG | + | chr7_4:57549458-57549477 | Msa1165600:CDS | 35.0% |
| ACCTTAAGTATTCCAGAAAG+CGG | - | chr7_4:57549604-57549623 | None:intergenic | 35.0% | |
| !! | GAAAGTACTTGATGAATGGT+AGG | - | chr7_4:57549705-57549724 | None:intergenic | 35.0% |
| TGATATCACTTACTACAACG+GGG | - | chr7_4:57549771-57549790 | None:intergenic | 35.0% | |
| CGTTGTAGTAAGTGATATCA+TGG | + | chr7_4:57549771-57549790 | Msa1165600:intron | 35.0% | |
| TAGTAAGTGATATCATGGAC+TGG | + | chr7_4:57549776-57549795 | Msa1165600:intron | 35.0% | |
| GTGTTCTATCACAACTTTGA+TGG | + | chr7_4:57549891-57549910 | Msa1165600:intron | 35.0% | |
| TGCGAAATTCACAATGTTTC+TGG | + | chr7_4:57550063-57550082 | Msa1165600:intron | 35.0% | |
| CTTCCATGAGAATTAAGATG+AGG | - | chr7_4:57550101-57550120 | None:intergenic | 35.0% | |
| TTTGTCATTCTCAATTCCCA+AGG | - | chr7_4:57550140-57550159 | None:intergenic | 35.0% | |
| ! | GCTGATATCGTTAGTTCTTT+AGG | + | chr7_4:57550163-57550182 | Msa1165600:intron | 35.0% |
| ! | TGTTTGTTAGGAAAGCTAAC+TGG | + | chr7_4:57550284-57550303 | Msa1165600:intron | 35.0% |
| TACAACCATCATTACAGCAA+TGG | + | chr7_4:57550314-57550333 | Msa1165600:CDS | 35.0% | |
| ACTTACCATTGCTGTAATGA+TGG | - | chr7_4:57550322-57550341 | None:intergenic | 35.0% | |
| TTACAGCAATGGTAAGTCTT+TGG | + | chr7_4:57550325-57550344 | Msa1165600:intron | 35.0% | |
| TTCAGATCCAAAATGTCATG+TGG | + | chr7_4:57550427-57550446 | Msa1165600:intron | 35.0% | |
| ! | GGAAATTGATAGTCTTGCTA+AGG | + | chr7_4:57550448-57550467 | Msa1165600:CDS | 35.0% |
| AACGTATTCAGAATTCTCCA+AGG | - | chr7_4:57550492-57550511 | None:intergenic | 35.0% | |
| ! | AAAGGACAATGATTTGGCAG+AGG | - | chr7_4:57546529-57546548 | None:intergenic | 40.0% |
| TTGTTGCGAAAGTCGATAGA+TGG | + | chr7_4:57546642-57546661 | Msa1165600:five_prime_UTR | 40.0% | |
| GAAAGTCGATAGATGGAAGA+TGG | + | chr7_4:57546649-57546668 | Msa1165600:exon | 40.0% | |
| ! | GATGGTTAATTTGAGAGCAG+CGG | - | chr7_4:57546759-57546778 | None:intergenic | 40.0% |
| ! | GACATACATGATGATGATGC+AGG | + | chr7_4:57546781-57546800 | Msa1165600:CDS | 40.0% |
| GTTGGAGAAGGTAGAAAGTA+AGG | + | chr7_4:57547467-57547486 | Msa1165600:CDS | 40.0% | |
| GGGAAGAACAACTTTCAATG+AGG | + | chr7_4:57547488-57547507 | Msa1165600:CDS | 40.0% | |
| CAACTTTCAATGAGGTTAGG+TGG | + | chr7_4:57547496-57547515 | Msa1165600:intron | 40.0% | |
| TCTCTTGCTTCAGTTTCATG+TGG | + | chr7_4:57547552-57547571 | Msa1165600:intron | 40.0% | |
| GGGGACAAAACACTATTCAT+TGG | - | chr7_4:57547827-57547846 | None:intergenic | 40.0% | |
| TCTGAATGTTCTCATGGCAA+TGG | + | chr7_4:57548006-57548025 | Msa1165600:CDS | 40.0% | |
| AGGTAAAGCTTAAGCCACAT+GGG | - | chr7_4:57548137-57548156 | None:intergenic | 40.0% | |
| ATCCTACCTAAAGGAGTTTG+AGG | + | chr7_4:57548265-57548284 | Msa1165600:CDS | 40.0% | |
| TTCCTCAAACTCCTTTAGGT+AGG | - | chr7_4:57548270-57548289 | None:intergenic | 40.0% | |
| CTTGTTCCTCAAACTCCTTT+AGG | - | chr7_4:57548274-57548293 | None:intergenic | 40.0% | |
| TTGCTGCACTTGATTACAGA+AGG | + | chr7_4:57548355-57548374 | Msa1165600:intron | 40.0% | |
| AAGGAAGCGATATGTTAGTC+AGG | - | chr7_4:57548381-57548400 | None:intergenic | 40.0% | |
| AGATCAGGAAATCCTTCAAG+CGG | + | chr7_4:57548504-57548523 | Msa1165600:CDS | 40.0% | |
| TGTACCTGAACCAGAACAAA+AGG | - | chr7_4:57548543-57548562 | None:intergenic | 40.0% | |
| ! | GCATATGTTTTGTGGTGAGT+TGG | - | chr7_4:57548664-57548683 | None:intergenic | 40.0% |
| CTAGGAATTAACAAAGCAGC+TGG | - | chr7_4:57548745-57548764 | None:intergenic | 40.0% | |
| TCAAGTTCAACAGTTGCATG+AGG | - | chr7_4:57549081-57549100 | None:intergenic | 40.0% | |
| TGCAACTGTTGAACTTGAAG+TGG | + | chr7_4:57549083-57549102 | Msa1165600:CDS | 40.0% | |
| CTACTATGTGCTCAAAGCAA+TGG | + | chr7_4:57549438-57549457 | Msa1165600:CDS | 40.0% | |
| ATTGACACGCTTGAAACTGA+AGG | - | chr7_4:57549562-57549581 | None:intergenic | 40.0% | |
| CAGTTTCAAGCGTGTCAATT+AGG | + | chr7_4:57549563-57549582 | Msa1165600:CDS | 40.0% | |
| TTAAGTATTCCAGAAAGCGG+AGG | - | chr7_4:57549601-57549620 | None:intergenic | 40.0% | |
| !! | TCCGCTTTCTGGAATACTTA+AGG | + | chr7_4:57549600-57549619 | Msa1165600:CDS | 40.0% |
| ACTTGATGAATGGTAGGCAA+AGG | - | chr7_4:57549699-57549718 | None:intergenic | 40.0% | |
| GACTGGAGTCCAACAAAAAT+AGG | + | chr7_4:57549793-57549812 | Msa1165600:intron | 40.0% | |
| TTGTGAATTTCGCATGCTCA+AGG | - | chr7_4:57550057-57550076 | None:intergenic | 40.0% | |
| ! | GAATGACACACAGTTTTCCT+TGG | + | chr7_4:57550472-57550491 | Msa1165600:CDS | 40.0% |
| ! | GATGATGATGCAGGATCACA+AGG | + | chr7_4:57546790-57546809 | Msa1165600:CDS | 45.0% |
| CGTCTTCTCCTTCTCTGAAT+TGG | + | chr7_4:57547145-57547164 | Msa1165600:intron | 45.0% | |
| AAAATCGATCCGCACCAACT+CGG | + | chr7_4:57547255-57547274 | Msa1165600:intron | 45.0% | |
| CTCCCCCAAATTAGCATGAA+AGG | + | chr7_4:57547347-57547366 | Msa1165600:intron | 45.0% | |
| ! | TTGCTGGTTGTATGCAGTGT+TGG | + | chr7_4:57547449-57547468 | Msa1165600:intron | 45.0% |
| ! | GTTGTATGCAGTGTTGGAGA+AGG | + | chr7_4:57547455-57547474 | Msa1165600:intron | 45.0% |
| ATGAGAAAAACGTCCGTCGA+AGG | + | chr7_4:57547972-57547991 | Msa1165600:CDS | 45.0% | |
| TGAGAAAAACGTCCGTCGAA+GGG | + | chr7_4:57547973-57547992 | Msa1165600:CDS | 45.0% | |
| AGCTTCTCAATAGCACTAGG+AGG | - | chr7_4:57548076-57548095 | None:intergenic | 45.0% | |
| GGTAAAGCTTAAGCCACATG+GGG | - | chr7_4:57548136-57548155 | None:intergenic | 45.0% | |
| CAGGTAAAGCTTAAGCCACA+TGG | - | chr7_4:57548138-57548157 | None:intergenic | 45.0% | |
| GTAATCAAGTGCAGCAAACC+AGG | - | chr7_4:57548352-57548371 | None:intergenic | 45.0% | |
| CAAACGAATGTCCACAGAAG+AGG | - | chr7_4:57548781-57548800 | None:intergenic | 45.0% | |
| GAGAATTCTTGGCCACAGAT+CGG | + | chr7_4:57548929-57548948 | Msa1165600:intron | 45.0% | |
| TCCTGCTGGATGCTTTAATG+TGG | + | chr7_4:57548993-57549012 | Msa1165600:intron | 45.0% | |
| ! | ACCACATTAAAGCATCCAGC+AGG | - | chr7_4:57548997-57549016 | None:intergenic | 45.0% |
| !! | GTCTCTGCTTGGCCTTAAAT+AGG | - | chr7_4:57549267-57549286 | None:intergenic | 45.0% |
| !! | TCAAGTAGAGAAGTTCTGGG+AGG | + | chr7_4:57549301-57549320 | Msa1165600:intron | 45.0% |
| ! | TGATGCTTTTGTCCCTGTGT+TGG | + | chr7_4:57549338-57549357 | Msa1165600:intron | 45.0% |
| ! | GATGCTTTTGTCCCTGTGTT+GGG | + | chr7_4:57549339-57549358 | Msa1165600:intron | 45.0% |
| CAGTTACATCTCCCAACACA+GGG | - | chr7_4:57549353-57549372 | None:intergenic | 45.0% | |
| ACAGTTACATCTCCCAACAC+AGG | - | chr7_4:57549354-57549373 | None:intergenic | 45.0% | |
| !! | AGAGTACTGCAGAGAGAGAA+GGG | - | chr7_4:57549400-57549419 | None:intergenic | 45.0% |
| !! | AAGAGTACTGCAGAGAGAGA+AGG | - | chr7_4:57549401-57549420 | None:intergenic | 45.0% |
| AGTGTAGCAATATCTCTCCG+AGG | - | chr7_4:57549478-57549497 | None:intergenic | 45.0% | |
| GCTACACTCAATGTTACGGA+AGG | + | chr7_4:57549490-57549509 | Msa1165600:CDS | 45.0% | |
| ACACTCAATGTTACGGAAGG+AGG | + | chr7_4:57549493-57549512 | Msa1165600:CDS | 45.0% | |
| CACTCAATGTTACGGAAGGA+GGG | + | chr7_4:57549494-57549513 | Msa1165600:CDS | 45.0% | |
| ACTCAATGTTACGGAAGGAG+GGG | + | chr7_4:57549495-57549514 | Msa1165600:CDS | 45.0% | |
| TGACGGTGATACTTTGTCAG+GGG | - | chr7_4:57550380-57550399 | None:intergenic | 45.0% | |
| GTGACGGTGATACTTTGTCA+GGG | - | chr7_4:57550381-57550400 | None:intergenic | 45.0% | |
| !!! | GCAGTTTTGGTTTCGAGCGA+AGG | - | chr7_4:57546581-57546600 | None:intergenic | 50.0% |
| ! | GTAGATGAAAGCAGGAGTGC+TGG | + | chr7_4:57546695-57546714 | Msa1165600:CDS | 50.0% |
| !!! | GTGCTGGTTTTCCATCTAGC+CGG | + | chr7_4:57546711-57546730 | Msa1165600:CDS | 50.0% |
| GAAGGAGAAGACGAAGACGA+AGG | - | chr7_4:57547138-57547157 | None:intergenic | 50.0% | |
| CTACTGTGTAGACACCGAGT+TGG | - | chr7_4:57547272-57547291 | None:intergenic | 50.0% | |
| GAAAAAGAGGGGCCAACAGA+CGG | + | chr7_4:57547298-57547317 | Msa1165600:intron | 50.0% | |
| AAAAAGAGGGGCCAACAGAC+GGG | + | chr7_4:57547299-57547318 | Msa1165600:intron | 50.0% | |
| CTAGGTGGCAGATGAACTTG+TGG | + | chr7_4:57547787-57547806 | Msa1165600:intron | 50.0% | |
| GAACATCATAGGCCCTTCGA+CGG | - | chr7_4:57547988-57548007 | None:intergenic | 50.0% | |
| !! | CTCTTTTGGTGGTCTCTGCT+TGG | - | chr7_4:57549278-57549297 | None:intergenic | 50.0% |
| !!! | GAAGTTCTGGGAGGCAGTTT+TGG | + | chr7_4:57549310-57549329 | Msa1165600:intron | 50.0% |
| AATGTTACGGAAGGAGGGGA+AGG | + | chr7_4:57549499-57549518 | Msa1165600:CDS | 50.0% | |
| GACACGCTTGAAACTGAAGG+AGG | - | chr7_4:57549559-57549578 | None:intergenic | 50.0% | |
| AAGCGTGTCAATTAGGCCTC+AGG | + | chr7_4:57549570-57549589 | Msa1165600:CDS | 50.0% | |
| ! | GGTGACGGTGATACTTTGTC+AGG | - | chr7_4:57550382-57550401 | None:intergenic | 50.0% |
| !! | GTGTAGACACCGAGTTGGTG+CGG | - | chr7_4:57547267-57547286 | None:intergenic | 55.0% |
| AAGTGCAGCAAACCAGGTCC+AGG | - | chr7_4:57548346-57548365 | None:intergenic | 55.0% | |
| !! | GGGGAAGGTTCTAGCTTGTC+AGG | + | chr7_4:57549514-57549533 | Msa1165600:CDS | 55.0% |
| GTCAGGCTTGCATCAGTTGC+AGG | + | chr7_4:57549531-57549550 | Msa1165600:CDS | 55.0% | |
| GGAAGATGGGAACGCGACTG+CGG | + | chr7_4:57546663-57546682 | Msa1165600:exon | 60.0% | |
| GGGGATGATGTCCTCAGTCC+TGG | + | chr7_4:57548325-57548344 | Msa1165600:intron | 60.0% | |
| GATGTCCTCAGTCCTGGACC+TGG | + | chr7_4:57548331-57548350 | Msa1165600:intron | 60.0% | |
| GCAAACCAGGTCCAGGACTG+AGG | - | chr7_4:57548339-57548358 | None:intergenic | 60.0% | |
| GAAAGCGGAGGTGATGCCTG+AGG | - | chr7_4:57549589-57549608 | None:intergenic | 60.0% | |
| CAGGCATCACCTCCGCTTTC+TGG | + | chr7_4:57549589-57549608 | Msa1165600:CDS | 60.0% | |
| !! | GTCGGCTCGCTCCGGCTAGA+TGG | - | chr7_4:57546725-57546744 | None:intergenic | 70.0% |
| !! | TCTGCGTCGTCGGCTCGCTC+CGG | - | chr7_4:57546733-57546752 | None:intergenic | 70.0% |
| GCAGCGGCTGTCTGCGTCGT+CGG | - | chr7_4:57546743-57546762 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 57546312 | 57550529 | 57546312 | ID=Msa1165600;Name=Msa1165600 |
| chr7_4 | mRNA | 57546312 | 57550529 | 57546312 | ID=Msa1165600-mRNA-1;Parent=Msa1165600;Name=Msa1165600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=356|0.88|0.7|1|0.88|0.9|10|0|325 |
| chr7_4 | exon | 57546312 | 57546821 | 57546312 | ID=Msa1165600-mRNA-1:exon:17412;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57547466 | 57547509 | 57547466 | ID=Msa1165600-mRNA-1:exon:17413;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57547791 | 57547853 | 57547791 | ID=Msa1165600-mRNA-1:exon:17414;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57547962 | 57548099 | 57547962 | ID=Msa1165600-mRNA-1:exon:17415;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57548224 | 57548292 | 57548224 | ID=Msa1165600-mRNA-1:exon:17416;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57548459 | 57548557 | 57548459 | ID=Msa1165600-mRNA-1:exon:17417;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57549072 | 57549136 | 57549072 | ID=Msa1165600-mRNA-1:exon:17418;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57549414 | 57549621 | 57549414 | ID=Msa1165600-mRNA-1:exon:17419;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57550299 | 57550335 | 57550299 | ID=Msa1165600-mRNA-1:exon:17420;Parent=Msa1165600-mRNA-1 |
| chr7_4 | exon | 57550432 | 57550529 | 57550432 | ID=Msa1165600-mRNA-1:exon:17421;Parent=Msa1165600-mRNA-1 |
| chr7_4 | five_prime_UTR | 57546312 | 57546667 | 57546312 | ID=Msa1165600-mRNA-1:five_prime_utr;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57546668 | 57546821 | 57546668 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57547466 | 57547509 | 57547466 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57547791 | 57547853 | 57547791 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57547962 | 57548099 | 57547962 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57548224 | 57548292 | 57548224 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57548459 | 57548557 | 57548459 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57549072 | 57549136 | 57549072 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57549414 | 57549621 | 57549414 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57550299 | 57550335 | 57550299 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| chr7_4 | CDS | 57550432 | 57550529 | 57550432 | ID=Msa1165600-mRNA-1:cds;Parent=Msa1165600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
