AlfalfaGEDB | Msa1165650

M. sativa cultivar zhongmu-4 / Msa1165650

KEGG: K13127
GO: -
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165650	KEH19406.1	82.301	113	18	1	12	124	31	141	1.81e-60	192

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165650	sp\|Q8GX84\|C3H1_ARATH	50.968	155	26	1	20	124	95	249	5.64e-45	152

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165650	A0A072TQE4	82.301	113	18	1	12	124	31	141	8.63e-61	192

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TFs/TRs:

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Gene ID	Type	Classification
Msa1165650	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165650	MtrunA17_Chr7g0269781	50.265	189	26	3	1	122	50	237	2.96e-52	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165650	AT1G01350.1	50.968	155	26	1	20	124	95	249	5.74e-46	152
Msa1165650	AT5G06420.1	51.634	153	24	1	22	124	132	284	1.37e-45	152
Msa1165650	AT5G06420.2	51.634	153	24	1	22	124	132	284	1.37e-45	152

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Find 52 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAGATGTGCTTCT+TGG	0.227049	7_4:-57594040	None:intergenic
AAACCTGCTTCTTCAGTGTG+TGG	0.491141	7_4:+57593880	Msa1165650:five_prime_UTR
AACCCACACACTGAAGAAGC+AGG	0.595301	7_4:-57593883	None:intergenic
AACCTGCTTCTTCAGTGTGT+GGG	0.483768	7_4:+57593881	Msa1165650:five_prime_UTR
AAGAAACCTAACCTGCTGGC+TGG	0.483916	7_4:-57593727	None:intergenic
AATGGAATGAAGCCGAGAAG+AGG	0.595307	7_4:+57594328	Msa1165650:CDS
ACACACTGAAGAAGCAGGTT+TGG	0.459341	7_4:-57593878	None:intergenic
ACCCGGACTTGTAATCGCCT+CGG	0.560050	7_4:-57594290	None:intergenic
ACCGAGGCGATTACAAGTCC+GGG	0.556767	7_4:+57594289	Msa1165650:CDS
AGAAACCTAACCTGCTGGCT+GGG	0.540786	7_4:-57593726	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGAAGGAAATCGAAATT+GGG	-	chr7_4:57593681-57593700	None:intergenic	30.0%
AATTGAGATGACTAAAAGTG+TGG	-	chr7_4:57593789-57593808	None:intergenic	30.0%
CTTAGCTTAGCTTATTAGTA+TGG	+	chr7_4:57593840-57593859	Msa1165650:intron	30.0%
TGAGAATGAAGAAGATAATG+AGG	+	chr7_4:57593951-57593970	Msa1165650:five_prime_UTR	30.0%
TGAGAAAAAGAACATGAAGA+AGG	+	chr7_4:57593999-57594018	Msa1165650:CDS	30.0%
AAAATGAAAGATGTGCTTCT+TGG	-	chr7_4:57594043-57594062	None:intergenic	30.0%
GAAACTCTAATATAAGTGGA+AGG	-	chr7_4:57594180-57594199	None:intergenic	30.0%
TTGTGAAGGAAATCGAAATT+GGG	-	chr7_4:57593681-57593700	None:intergenic	30.0%
AATTGAGATGACTAAAAGTG+TGG	-	chr7_4:57593789-57593808	None:intergenic	30.0%
CTTAGCTTAGCTTATTAGTA+TGG	+	chr7_4:57593840-57593859	Msa1165650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	57593571	57594362	57593571	ID=Msa1165650;Name=Msa1165650
chr7_4	mRNA	57593571	57594362	57593571	ID=Msa1165650-mRNA-1;Parent=Msa1165650;Name=Msa1165650-mRNA-1;_AED=0.24;_eAED=0.39;_QI=289\|0\|0.5\|1\|0\|0\|2\|0\|124
chr7_4	exon	57593571	57593737	57593571	ID=Msa1165650-mRNA-1:exon:17475;Parent=Msa1165650-mRNA-1
chr7_4	exon	57593866	57594362	57593866	ID=Msa1165650-mRNA-1:exon:17476;Parent=Msa1165650-mRNA-1
chr7_4	five_prime_UTR	57593571	57593737	57593571	ID=Msa1165650-mRNA-1:five_prime_utr;Parent=Msa1165650-mRNA-1
chr7_4	five_prime_UTR	57593866	57593987	57593866	ID=Msa1165650-mRNA-1:five_prime_utr;Parent=Msa1165650-mRNA-1
chr7_4	CDS	57593988	57594362	57593988	ID=Msa1165650-mRNA-1:cds;Parent=Msa1165650-mRNA-1

Gene Sequence	>Msa1165650 ATGATGAATGTTGAGAAAAAGAACATGAAGAAGGCTGACAGTAATGAAGAATCCAAGAAGCACATCTTTCATTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGAGACTGAGACTCATTTTTCAAGTTCCATCCGTGGGTCACACTCACACGGTCCTCTCAGACCTTCCACTTATATTAGAGTTTCATCAAGAATCGATTATCAACCTGACATATGCAAAGACTTCAAGGAGACCGGGTATTGTGGCTACGGCGATTCATGCAAGTTTCTTCACGACCGAGGCGATTACAAGTCCGGGTGGCAGTTGGACAAAGAATGGAATGAAGCCGAGAAGAGGAGGGTGCGCTGA
Protein sequence	>Msa1165650 MMNVEKKNMKKADSNEESKKHIFHFESSKEIQVQHDSKATATLETETHFSSSIRGSHSHGPLRPSTYIRVSSRIDYQPDICKDFKETGYCGYGDSCKFLHDRGDYKSGWQLDKEWNEAEKRRVR*