Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168800 | XP_024625181.1 | 93.820 | 178 | 11 | 0 | 1 | 178 | 87 | 264 | 1.35e-117 | 356 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168800 | sp|Q9SKN5|ARFJ_ARATH | 63.636 | 154 | 50 | 1 | 1 | 148 | 65 | 218 | 1.14e-61 | 205 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168800 | A0A396H9J8 | 93.820 | 178 | 11 | 0 | 1 | 178 | 87 | 264 | 6.54e-118 | 356 |
Gene ID | Type | Classification |
---|---|---|
Msa1168800 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168800 | MtrunA17_Chr7g0264171 | 93.820 | 178 | 11 | 0 | 1 | 178 | 87 | 264 | 1.26e-121 | 356 |
Msa1168800 | MtrunA17_Chr7g0264161 | 88.750 | 160 | 18 | 0 | 1 | 160 | 48 | 207 | 6.53e-104 | 300 |
Msa1168800 | MtrunA17_Chr2g0326761 | 61.364 | 176 | 63 | 2 | 1 | 176 | 67 | 237 | 2.57e-66 | 214 |
Msa1168800 | MtrunA17_Chr1g0199681 | 66.216 | 148 | 50 | 0 | 1 | 148 | 149 | 296 | 2.45e-64 | 209 |
Msa1168800 | MtrunA17_Chr1g0181211 | 67.320 | 153 | 42 | 2 | 1 | 148 | 83 | 232 | 4.44e-63 | 206 |
Msa1168800 | MtrunA17_Chr4g0028971 | 58.889 | 180 | 70 | 3 | 1 | 177 | 66 | 244 | 1.83e-60 | 199 |
Msa1168800 | MtrunA17_Chr3g0115271 | 54.667 | 150 | 61 | 2 | 1 | 148 | 76 | 220 | 5.75e-49 | 166 |
Msa1168800 | MtrunA17_Chr8g0389081 | 52.000 | 150 | 66 | 2 | 2 | 149 | 95 | 240 | 2.50e-46 | 162 |
Msa1168800 | MtrunA17_Chr1g0156321 | 51.007 | 149 | 70 | 1 | 2 | 150 | 106 | 251 | 5.14e-46 | 160 |
Msa1168800 | MtrunA17_Chr4g0070181 | 48.667 | 150 | 71 | 2 | 2 | 149 | 85 | 230 | 2.61e-44 | 156 |
Msa1168800 | MtrunA17_Chr2g0301251 | 49.333 | 150 | 70 | 2 | 2 | 149 | 85 | 230 | 5.93e-44 | 155 |
Msa1168800 | MtrunA17_Chr2g0285461 | 48.026 | 152 | 75 | 2 | 2 | 152 | 86 | 234 | 4.20e-42 | 149 |
Msa1168800 | MtrunA17_Chr2g0282961 | 48.684 | 152 | 71 | 1 | 2 | 146 | 108 | 259 | 8.38e-42 | 147 |
Msa1168800 | MtrunA17_Chr5g0424931 | 50.000 | 150 | 61 | 2 | 1 | 145 | 78 | 218 | 9.93e-42 | 146 |
Msa1168800 | MtrunA17_Chr2g0276781 | 47.682 | 151 | 74 | 2 | 2 | 151 | 85 | 231 | 4.34e-41 | 146 |
Msa1168800 | MtrunA17_Chr4g0029671 | 48.428 | 159 | 74 | 1 | 1 | 151 | 114 | 272 | 8.24e-41 | 145 |
Msa1168800 | MtrunA17_Chr3g0109391 | 48.366 | 153 | 73 | 3 | 2 | 152 | 89 | 237 | 1.44e-40 | 145 |
Msa1168800 | MtrunA17_Chr5g0433301 | 47.712 | 153 | 74 | 3 | 2 | 152 | 87 | 235 | 1.96e-40 | 145 |
Msa1168800 | MtrunA17_Chr2g0289221 | 48.649 | 148 | 70 | 3 | 1 | 145 | 80 | 224 | 4.78e-40 | 139 |
Msa1168800 | MtrunA17_Chr8g0376771 | 46.980 | 149 | 73 | 2 | 2 | 148 | 85 | 229 | 6.15e-40 | 143 |
Msa1168800 | MtrunA17_Chr4g0046371 | 43.182 | 176 | 88 | 2 | 2 | 165 | 94 | 269 | 6.88e-40 | 143 |
Msa1168800 | MtrunA17_Chr5g0417281 | 46.753 | 154 | 69 | 3 | 1 | 148 | 70 | 216 | 9.25e-40 | 141 |
Msa1168800 | MtrunA17_Chr2g0326281 | 45.349 | 172 | 73 | 3 | 1 | 151 | 116 | 287 | 9.45e-40 | 143 |
Msa1168800 | MtrunA17_Chr4g0009751 | 47.333 | 150 | 74 | 2 | 1 | 149 | 80 | 225 | 6.71e-39 | 139 |
Msa1168800 | MtrunA17_Chr8g0385791 | 45.238 | 168 | 85 | 4 | 2 | 166 | 121 | 284 | 9.39e-39 | 140 |
Msa1168800 | MtrunA17_Chr8g0346711 | 46.711 | 152 | 76 | 2 | 1 | 151 | 90 | 237 | 1.29e-37 | 136 |
Msa1168800 | MtrunA17_Chr7g0239061 | 46.528 | 144 | 74 | 2 | 1 | 144 | 75 | 215 | 4.52e-37 | 135 |
Msa1168800 | MtrunA17_Chr5g0417211 | 45.513 | 156 | 69 | 3 | 1 | 147 | 71 | 219 | 3.20e-35 | 127 |
Msa1168800 | MtrunA17_Chr5g0436761 | 43.312 | 157 | 72 | 3 | 1 | 147 | 71 | 220 | 1.54e-32 | 120 |
Msa1168800 | MtrunA17_Chr1g0178011 | 41.892 | 148 | 78 | 2 | 1 | 145 | 71 | 213 | 2.90e-32 | 120 |
Msa1168800 | MtrunA17_Chr2g0277461 | 41.781 | 146 | 82 | 3 | 1 | 145 | 74 | 217 | 1.81e-31 | 117 |
Msa1168800 | MtrunA17_Chr5g0425661 | 38.028 | 142 | 70 | 3 | 1 | 133 | 93 | 225 | 5.14e-26 | 99.4 |
Msa1168800 | MtrunA17_Chr8g0356211 | 42.424 | 99 | 57 | 0 | 53 | 151 | 2 | 100 | 3.69e-25 | 99.0 |
Msa1168800 | MtrunA17_Chr2g0277531 | 37.838 | 148 | 85 | 5 | 1 | 145 | 81 | 224 | 2.84e-22 | 91.3 |
Msa1168800 | MtrunA17_Chr5g0424801 | 33.333 | 147 | 73 | 5 | 6 | 145 | 76 | 204 | 1.64e-17 | 79.0 |
Msa1168800 | MtrunA17_Chr5g0424741 | 31.977 | 172 | 88 | 6 | 1 | 145 | 71 | 240 | 6.75e-16 | 74.7 |
Msa1168800 | MtrunA17_Chr5g0425261 | 32.000 | 150 | 77 | 5 | 6 | 148 | 76 | 207 | 1.95e-15 | 72.8 |
Msa1168800 | MtrunA17_Chr8g0345771 | 30.709 | 127 | 83 | 2 | 40 | 162 | 167 | 292 | 9.40e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168800 | AT2G28350.2 | 63.636 | 154 | 50 | 1 | 1 | 148 | 65 | 218 | 8.73e-63 | 205 |
Msa1168800 | AT2G28350.1 | 63.636 | 154 | 50 | 1 | 1 | 148 | 65 | 218 | 1.16e-62 | 205 |
Msa1168800 | AT4G30080.1 | 59.524 | 168 | 59 | 3 | 1 | 159 | 74 | 241 | 8.64e-60 | 197 |
Msa1168800 | AT1G77850.2 | 50.676 | 148 | 71 | 1 | 1 | 146 | 73 | 220 | 5.72e-46 | 159 |
Msa1168800 | AT1G77850.1 | 50.676 | 148 | 71 | 1 | 1 | 146 | 73 | 220 | 6.39e-46 | 159 |
Msa1168800 | AT1G19220.1 | 50.667 | 150 | 68 | 2 | 2 | 149 | 85 | 230 | 1.20e-44 | 157 |
Msa1168800 | AT5G20730.3 | 49.007 | 151 | 71 | 2 | 2 | 150 | 86 | 232 | 9.97e-44 | 155 |
Msa1168800 | AT5G20730.2 | 49.007 | 151 | 71 | 2 | 2 | 150 | 86 | 232 | 1.19e-43 | 154 |
Msa1168800 | AT5G20730.1 | 49.007 | 151 | 71 | 2 | 2 | 150 | 86 | 232 | 1.19e-43 | 154 |
Msa1168800 | AT1G19850.1 | 49.007 | 151 | 75 | 1 | 2 | 152 | 117 | 265 | 5.46e-43 | 152 |
Msa1168800 | AT1G19850.2 | 49.007 | 151 | 75 | 1 | 2 | 152 | 106 | 254 | 5.73e-43 | 152 |
Msa1168800 | AT1G30330.1 | 49.669 | 151 | 74 | 2 | 2 | 152 | 86 | 234 | 2.54e-41 | 148 |
Msa1168800 | AT1G30330.3 | 49.669 | 151 | 74 | 2 | 2 | 152 | 88 | 236 | 2.54e-41 | 148 |
Msa1168800 | AT1G30330.2 | 49.669 | 151 | 74 | 2 | 2 | 152 | 88 | 236 | 2.54e-41 | 148 |
Msa1168800 | AT5G37020.2 | 47.712 | 153 | 74 | 3 | 2 | 152 | 85 | 233 | 3.60e-41 | 147 |
Msa1168800 | AT5G60450.2 | 47.170 | 159 | 76 | 2 | 1 | 151 | 101 | 259 | 3.72e-41 | 147 |
Msa1168800 | AT5G60450.1 | 47.170 | 159 | 76 | 2 | 1 | 151 | 125 | 283 | 4.03e-41 | 147 |
Msa1168800 | AT5G37020.1 | 47.712 | 153 | 74 | 3 | 2 | 152 | 85 | 233 | 5.28e-41 | 147 |
Msa1168800 | AT1G59750.4 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 1.41e-40 | 145 |
Msa1168800 | AT1G59750.2 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 1.49e-40 | 145 |
Msa1168800 | AT1G59750.1 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 1.72e-40 | 145 |
Msa1168800 | AT1G59750.3 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 1.72e-40 | 145 |
Msa1168800 | AT2G33860.1 | 45.455 | 154 | 77 | 1 | 2 | 148 | 109 | 262 | 7.87e-40 | 142 |
Msa1168800 | AT3G61830.2 | 44.805 | 154 | 76 | 2 | 2 | 152 | 37 | 184 | 1.73e-38 | 138 |
Msa1168800 | AT3G61830.1 | 44.805 | 154 | 76 | 2 | 2 | 152 | 88 | 235 | 3.08e-38 | 138 |
Msa1168800 | AT5G62000.2 | 43.452 | 168 | 88 | 3 | 2 | 166 | 123 | 286 | 9.18e-38 | 137 |
Msa1168800 | AT5G62000.5 | 43.452 | 168 | 88 | 3 | 2 | 166 | 123 | 286 | 9.18e-38 | 137 |
Msa1168800 | AT5G62000.3 | 43.452 | 168 | 88 | 3 | 2 | 166 | 123 | 286 | 9.18e-38 | 137 |
Msa1168800 | AT5G62000.1 | 43.452 | 168 | 88 | 3 | 2 | 166 | 123 | 286 | 9.18e-38 | 137 |
Msa1168800 | AT5G62000.4 | 43.452 | 168 | 88 | 3 | 2 | 166 | 123 | 286 | 9.89e-38 | 137 |
Msa1168800 | AT5G37020.3 | 54.630 | 108 | 49 | 0 | 45 | 152 | 31 | 138 | 1.72e-37 | 136 |
Msa1168800 | AT4G23980.2 | 46.575 | 146 | 74 | 2 | 2 | 146 | 75 | 217 | 2.87e-37 | 135 |
Msa1168800 | AT4G23980.1 | 46.575 | 146 | 74 | 2 | 2 | 146 | 75 | 217 | 3.05e-37 | 135 |
Msa1168800 | AT2G33860.2 | 56.731 | 104 | 45 | 0 | 45 | 148 | 2 | 105 | 4.14e-37 | 133 |
Msa1168800 | AT2G46530.1 | 41.420 | 169 | 89 | 3 | 2 | 166 | 84 | 246 | 6.55e-37 | 134 |
Msa1168800 | AT2G46530.3 | 41.420 | 169 | 89 | 3 | 2 | 166 | 105 | 267 | 6.86e-37 | 134 |
Msa1168800 | AT1G35520.1 | 44.295 | 149 | 77 | 2 | 2 | 150 | 89 | 231 | 4.37e-34 | 126 |
Msa1168800 | AT1G35540.1 | 46.099 | 141 | 70 | 2 | 6 | 146 | 93 | 227 | 8.02e-34 | 125 |
Msa1168800 | AT1G34310.1 | 43.448 | 145 | 76 | 1 | 6 | 150 | 93 | 231 | 3.57e-33 | 124 |
Msa1168800 | AT1G35240.1 | 43.448 | 145 | 76 | 1 | 6 | 150 | 93 | 231 | 6.99e-33 | 123 |
Msa1168800 | AT1G34410.1 | 43.709 | 151 | 75 | 2 | 2 | 150 | 89 | 231 | 1.16e-32 | 122 |
Msa1168800 | AT2G46530.2 | 45.161 | 124 | 67 | 1 | 44 | 166 | 36 | 159 | 1.74e-32 | 121 |
Msa1168800 | AT1G34390.1 | 44.138 | 145 | 73 | 2 | 2 | 146 | 89 | 225 | 6.67e-32 | 120 |
Msa1168800 | AT1G34170.2 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 2.40e-28 | 110 |
Msa1168800 | AT1G34170.1 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 2.87e-28 | 110 |
Msa1168800 | AT1G34170.3 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 3.62e-28 | 110 |
Msa1168800 | AT1G43950.1 | 39.568 | 139 | 75 | 4 | 6 | 144 | 93 | 222 | 3.34e-23 | 92.0 |
Msa1168800 | AT2G46870.1 | 36.082 | 97 | 61 | 1 | 37 | 133 | 27 | 122 | 3.78e-13 | 66.6 |
Msa1168800 | AT1G01030.2 | 34.545 | 110 | 66 | 2 | 40 | 144 | 51 | 159 | 3.13e-11 | 61.2 |
Msa1168800 | AT3G25730.1 | 30.952 | 126 | 70 | 2 | 45 | 168 | 183 | 293 | 4.80e-11 | 60.5 |
Msa1168800 | AT1G01030.1 | 34.545 | 110 | 66 | 2 | 40 | 144 | 51 | 159 | 4.83e-11 | 60.8 |
Msa1168800 | AT4G01500.1 | 31.200 | 125 | 73 | 4 | 18 | 133 | 1 | 121 | 6.48e-11 | 60.1 |
Find 46 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTTGTCAGGGTGGAAATT+TGG | 0.238329 | 7_4:+61629884 | Msa1168800:CDS |
CATCAACGTGTCTGAAATTA+AGG | 0.241218 | 7_4:+61629514 | Msa1168800:CDS |
GCATTTCAGGCATGTTTATA+GGG | 0.274751 | 7_4:+61629703 | Msa1168800:CDS |
GGCATTTCAGGCATGTTTAT+AGG | 0.293252 | 7_4:+61629702 | Msa1168800:CDS |
ATGGTGAAAAGTGGCATTTC+AGG | 0.316984 | 7_4:+61629690 | Msa1168800:CDS |
TGGAAATTTGGTAGTGGAAT+TGG | 0.321491 | 7_4:+61629896 | Msa1168800:CDS |
TTGGAATTCGGAGGGCTAAA+AGG | 0.363443 | 7_4:+61629840 | Msa1168800:CDS |
TTTGATAATGATGGTGTTGC+TGG | 0.376636 | 7_4:+61629491 | Msa1168800:CDS |
AGTGACAAGAAACTTGCTTC+TGG | 0.385156 | 7_4:+61629773 | Msa1168800:CDS |
CTAACTTGGTTAATATTCAT+AGG | 0.385591 | 7_4:-61629467 | None:intergenic |
AAGAGGCATTTGTTGACAAC+TGG | 0.392584 | 7_4:+61629734 | Msa1168800:CDS |
AGTTTCTTGTCACTGACATA+TGG | 0.394738 | 7_4:-61629764 | None:intergenic |
GTTGGAGTCAATCCTTTGTC+AGG | 0.400283 | 7_4:+61629872 | Msa1168800:CDS |
GTGAACTTAATGTTGGAATT+CGG | 0.402297 | 7_4:+61629828 | Msa1168800:CDS |
GTGACAAGAAACTTGCTTCT+GGG | 0.423889 | 7_4:+61629774 | Msa1168800:CDS |
CATCATTATCAAAACTAACT+TGG | 0.449861 | 7_4:-61629481 | None:intergenic |
GTTGTCAACAAATGCCTCTT+CGG | 0.456311 | 7_4:-61629731 | None:intergenic |
ATTTGTCCTGCACCACCTTA+CGG | 0.476461 | 7_4:+61629920 | Msa1168800:CDS |
GAAAACAGTGAACTTAATGT+TGG | 0.494744 | 7_4:+61629821 | Msa1168800:CDS |
TCAGGGTGGAAATTTGGTAG+TGG | 0.505938 | 7_4:+61629890 | Msa1168800:CDS |
TTGGGATAGATGTCCTGAAA+AGG | 0.529804 | 7_4:-61629659 | None:intergenic |
AATCCTCCGTAAGGTGGTGC+AGG | 0.533772 | 7_4:-61629926 | None:intergenic |
TGACAAGAAACTTGCTTCTG+GGG | 0.545499 | 7_4:+61629775 | Msa1168800:CDS |
CCAAATTTCCACCCTGACAA+AGG | 0.546733 | 7_4:-61629884 | None:intergenic |
GCTAAAAGGCGAAATAATGT+TGG | 0.555377 | 7_4:+61629854 | Msa1168800:CDS |
CATTTCAGGCATGTTTATAG+GGG | 0.556177 | 7_4:+61629704 | Msa1168800:CDS |
AACTATGGAAATCCTCCGTA+AGG | 0.559080 | 7_4:-61629935 | None:intergenic |
AGCGTTTCGGCACAATATCT+AGG | 0.559188 | 7_4:-61629605 | None:intergenic |
GGCATTTGTTGACAACTGGA+TGG | 0.569244 | 7_4:+61629738 | Msa1168800:CDS |
AACTTAATGTTGGAATTCGG+AGG | 0.572730 | 7_4:+61629831 | Msa1168800:CDS |
AGGATGTACATGGTGAAAAG+TGG | 0.579569 | 7_4:+61629681 | Msa1168800:CDS |
TCTGATGCAAACACTGGTGG+TGG | 0.592766 | 7_4:+61629572 | Msa1168800:CDS |
ATCTATCCCAAGGATGTACA+TGG | 0.592936 | 7_4:+61629671 | Msa1168800:CDS |
GGATAGATGTCCTGAAAAGG+AGG | 0.594077 | 7_4:-61629656 | None:intergenic |
TTGGAGTCAATCCTTTGTCA+GGG | 0.598239 | 7_4:+61629873 | Msa1168800:CDS |
ATGAAGTGTATGCAAAACTC+AGG | 0.607388 | 7_4:+61629438 | Msa1168800:CDS |
TTTATAGGGGCACGCCGAAG+AGG | 0.616360 | 7_4:+61629717 | Msa1168800:CDS |
GTTTGCATCAGATTGTGTCA+AGG | 0.616878 | 7_4:-61629561 | None:intergenic |
ACACAATCTGATGCAAACAC+TGG | 0.627018 | 7_4:+61629566 | Msa1168800:CDS |
ACTTAATGTTGGAATTCGGA+GGG | 0.629032 | 7_4:+61629832 | Msa1168800:CDS |
TATGGAAATCCTCCGTAAGG+TGG | 0.634599 | 7_4:-61629932 | None:intergenic |
GAGTCAATCCTTTGTCAGGG+TGG | 0.657457 | 7_4:+61629876 | Msa1168800:CDS |
TGTCCTGCACCACCTTACGG+AGG | 0.685773 | 7_4:+61629923 | Msa1168800:CDS |
GATAGATGTCCTGAAAAGGA+GGG | 0.691897 | 7_4:-61629655 | None:intergenic |
CAATCTGATGCAAACACTGG+TGG | 0.725224 | 7_4:+61629569 | Msa1168800:CDS |
TTAGCTGAATAGTCCAAACG+AGG | 0.756003 | 7_4:-61629632 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | CTAACTTGGTTAATATTCAT+AGG | - | chr7_4:61629470-61629489 | None:intergenic | 25.0% |
! | CATCATTATCAAAACTAACT+TGG | - | chr7_4:61629484-61629503 | None:intergenic | 25.0% |
!!! | CAAGTTAGTTTTGATAATGA+TGG | + | chr7_4:61629482-61629501 | Msa1168800:CDS | 25.0% |
GAAAACAGTGAACTTAATGT+TGG | + | chr7_4:61629821-61629840 | Msa1168800:CDS | 30.0% | |
GTGAACTTAATGTTGGAATT+CGG | + | chr7_4:61629828-61629847 | Msa1168800:CDS | 30.0% | |
! | GAGTTTTGCATACACTTCAT+CGG | - | chr7_4:61629438-61629457 | None:intergenic | 35.0% |
ATGAAGTGTATGCAAAACTC+AGG | + | chr7_4:61629438-61629457 | Msa1168800:CDS | 35.0% | |
!! | TTTGATAATGATGGTGTTGC+TGG | + | chr7_4:61629491-61629510 | Msa1168800:CDS | 35.0% |
! | CATCAACGTGTCTGAAATTA+AGG | + | chr7_4:61629514-61629533 | Msa1168800:CDS | 35.0% |
! | TTTTCACCATGTACATCCTT+GGG | - | chr7_4:61629680-61629699 | None:intergenic | 35.0% |
GCATTTCAGGCATGTTTATA+GGG | + | chr7_4:61629703-61629722 | Msa1168800:CDS | 35.0% | |
CATTTCAGGCATGTTTATAG+GGG | + | chr7_4:61629704-61629723 | Msa1168800:CDS | 35.0% | |
AGTTTCTTGTCACTGACATA+TGG | - | chr7_4:61629767-61629786 | None:intergenic | 35.0% | |
AACTTAATGTTGGAATTCGG+AGG | + | chr7_4:61629831-61629850 | Msa1168800:CDS | 35.0% | |
ACTTAATGTTGGAATTCGGA+GGG | + | chr7_4:61629832-61629851 | Msa1168800:CDS | 35.0% | |
GCTAAAAGGCGAAATAATGT+TGG | + | chr7_4:61629854-61629873 | Msa1168800:CDS | 35.0% | |
!! | TGGAAATTTGGTAGTGGAAT+TGG | + | chr7_4:61629896-61629915 | Msa1168800:CDS | 35.0% |
GTTTGCATCAGATTGTGTCA+AGG | - | chr7_4:61629564-61629583 | None:intergenic | 40.0% | |
ACACAATCTGATGCAAACAC+TGG | + | chr7_4:61629566-61629585 | Msa1168800:CDS | 40.0% | |
!! | CAAACGAGGAAAAAGCGTTT+CGG | - | chr7_4:61629621-61629640 | None:intergenic | 40.0% |
TTAGCTGAATAGTCCAAACG+AGG | - | chr7_4:61629635-61629654 | None:intergenic | 40.0% | |
GATAGATGTCCTGAAAAGGA+GGG | - | chr7_4:61629658-61629677 | None:intergenic | 40.0% | |
TTGGGATAGATGTCCTGAAA+AGG | - | chr7_4:61629662-61629681 | None:intergenic | 40.0% | |
!! | TTTTCAGGACATCTATCCCA+AGG | + | chr7_4:61629661-61629680 | Msa1168800:CDS | 40.0% |
ATCTATCCCAAGGATGTACA+TGG | + | chr7_4:61629671-61629690 | Msa1168800:CDS | 40.0% | |
! | CTTTTCACCATGTACATCCT+TGG | - | chr7_4:61629681-61629700 | None:intergenic | 40.0% |
AGGATGTACATGGTGAAAAG+TGG | + | chr7_4:61629681-61629700 | Msa1168800:CDS | 40.0% | |
ATGGTGAAAAGTGGCATTTC+AGG | + | chr7_4:61629690-61629709 | Msa1168800:CDS | 40.0% | |
GGCATTTCAGGCATGTTTAT+AGG | + | chr7_4:61629702-61629721 | Msa1168800:CDS | 40.0% | |
GTTGTCAACAAATGCCTCTT+CGG | - | chr7_4:61629734-61629753 | None:intergenic | 40.0% | |
!! | AAGAGGCATTTGTTGACAAC+TGG | + | chr7_4:61629734-61629753 | Msa1168800:CDS | 40.0% |
! | AGTGACAAGAAACTTGCTTC+TGG | + | chr7_4:61629773-61629792 | Msa1168800:CDS | 40.0% |
! | GTGACAAGAAACTTGCTTCT+GGG | + | chr7_4:61629774-61629793 | Msa1168800:CDS | 40.0% |
! | TGACAAGAAACTTGCTTCTG+GGG | + | chr7_4:61629775-61629794 | Msa1168800:CDS | 40.0% |
TTGGAGTCAATCCTTTGTCA+GGG | + | chr7_4:61629873-61629892 | Msa1168800:CDS | 40.0% | |
CAATCTGATGCAAACACTGG+TGG | + | chr7_4:61629569-61629588 | Msa1168800:CDS | 45.0% | |
AGCGTTTCGGCACAATATCT+AGG | - | chr7_4:61629608-61629627 | None:intergenic | 45.0% | |
!!! | CGAAACGCTTTTTCCTCGTT+TGG | + | chr7_4:61629619-61629638 | Msa1168800:CDS | 45.0% |
! | TTCAGCTAACCCTCCTTTTC+AGG | + | chr7_4:61629646-61629665 | Msa1168800:CDS | 45.0% |
GGATAGATGTCCTGAAAAGG+AGG | - | chr7_4:61629659-61629678 | None:intergenic | 45.0% | |
! | GGCATTTGTTGACAACTGGA+TGG | + | chr7_4:61629738-61629757 | Msa1168800:CDS | 45.0% |
TTGGAATTCGGAGGGCTAAA+AGG | + | chr7_4:61629840-61629859 | Msa1168800:CDS | 45.0% | |
GTTGGAGTCAATCCTTTGTC+AGG | + | chr7_4:61629872-61629891 | Msa1168800:CDS | 45.0% | |
CCAAATTTCCACCCTGACAA+AGG | - | chr7_4:61629887-61629906 | None:intergenic | 45.0% | |
CCTTTGTCAGGGTGGAAATT+TGG | + | chr7_4:61629884-61629903 | Msa1168800:CDS | 45.0% | |
TCAGGGTGGAAATTTGGTAG+TGG | + | chr7_4:61629890-61629909 | Msa1168800:CDS | 45.0% | |
ATTTGTCCTGCACCACCTTA+CGG | + | chr7_4:61629920-61629939 | Msa1168800:CDS | 45.0% | |
TATGGAAATCCTCCGTAAGG+TGG | - | chr7_4:61629935-61629954 | None:intergenic | 45.0% | |
TCTGATGCAAACACTGGTGG+TGG | + | chr7_4:61629572-61629591 | Msa1168800:CDS | 50.0% | |
GAGTCAATCCTTTGTCAGGG+TGG | + | chr7_4:61629876-61629895 | Msa1168800:CDS | 50.0% | |
! | TTTATAGGGGCACGCCGAAG+AGG | + | chr7_4:61629717-61629736 | Msa1168800:CDS | 55.0% |
AATCCTCCGTAAGGTGGTGC+AGG | - | chr7_4:61629929-61629948 | None:intergenic | 55.0% | |
TGTCCTGCACCACCTTACGG+AGG | + | chr7_4:61629923-61629942 | Msa1168800:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 61629419 | 61629955 | 61629419 | ID=Msa1168800;Name=Msa1168800 |
chr7_4 | mRNA | 61629419 | 61629955 | 61629419 | ID=Msa1168800-mRNA-1;Parent=Msa1168800;Name=Msa1168800-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|178 |
chr7_4 | exon | 61629419 | 61629955 | 61629419 | ID=Msa1168800-mRNA-1:exon:19475;Parent=Msa1168800-mRNA-1 |
chr7_4 | CDS | 61629419 | 61629955 | 61629419 | ID=Msa1168800-mRNA-1:cds;Parent=Msa1168800-mRNA-1 |
Gene Sequence |
Protein sequence |