AlfalfaGEDB | Msa1168800

M. sativa cultivar zhongmu-4 / Msa1168800

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168800	XP_024625181.1	93.820	178	11	0	1	178	87	264	1.35e-117	356

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168800	sp\|Q9SKN5\|ARFJ_ARATH	63.636	154	50	1	1	148	65	218	1.14e-61	205

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168800	A0A396H9J8	93.820	178	11	0	1	178	87	264	6.54e-118	356

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TFs/TRs:

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Gene ID	Type	Classification
Msa1168800	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168800	MtrunA17_Chr7g0264171	93.820	178	11	0	1	178	87	264	1.26e-121	356
Msa1168800	MtrunA17_Chr7g0264161	88.750	160	18	0	1	160	48	207	6.53e-104	300
Msa1168800	MtrunA17_Chr2g0326761	61.364	176	63	2	1	176	67	237	2.57e-66	214
Msa1168800	MtrunA17_Chr1g0199681	66.216	148	50	0	1	148	149	296	2.45e-64	209
Msa1168800	MtrunA17_Chr1g0181211	67.320	153	42	2	1	148	83	232	4.44e-63	206
Msa1168800	MtrunA17_Chr4g0028971	58.889	180	70	3	1	177	66	244	1.83e-60	199
Msa1168800	MtrunA17_Chr3g0115271	54.667	150	61	2	1	148	76	220	5.75e-49	166
Msa1168800	MtrunA17_Chr8g0389081	52.000	150	66	2	2	149	95	240	2.50e-46	162
Msa1168800	MtrunA17_Chr1g0156321	51.007	149	70	1	2	150	106	251	5.14e-46	160
Msa1168800	MtrunA17_Chr4g0070181	48.667	150	71	2	2	149	85	230	2.61e-44	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168800	AT2G28350.2	63.636	154	50	1	1	148	65	218	8.73e-63	205
Msa1168800	AT2G28350.1	63.636	154	50	1	1	148	65	218	1.16e-62	205
Msa1168800	AT4G30080.1	59.524	168	59	3	1	159	74	241	8.64e-60	197
Msa1168800	AT1G77850.2	50.676	148	71	1	1	146	73	220	5.72e-46	159
Msa1168800	AT1G77850.1	50.676	148	71	1	1	146	73	220	6.39e-46	159
Msa1168800	AT1G19220.1	50.667	150	68	2	2	149	85	230	1.20e-44	157
Msa1168800	AT5G20730.3	49.007	151	71	2	2	150	86	232	9.97e-44	155
Msa1168800	AT5G20730.2	49.007	151	71	2	2	150	86	232	1.19e-43	154
Msa1168800	AT5G20730.1	49.007	151	71	2	2	150	86	232	1.19e-43	154
Msa1168800	AT1G19850.1	49.007	151	75	1	2	152	117	265	5.46e-43	152

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Find 46 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTATGGAAATCCTCCGTA+AGG	0.559080	7_4:-61629935	None:intergenic
AACTTAATGTTGGAATTCGG+AGG	0.572730	7_4:+61629831	Msa1168800:CDS
AAGAGGCATTTGTTGACAAC+TGG	0.392584	7_4:+61629734	Msa1168800:CDS
AATCCTCCGTAAGGTGGTGC+AGG	0.533772	7_4:-61629926	None:intergenic
ACACAATCTGATGCAAACAC+TGG	0.627018	7_4:+61629566	Msa1168800:CDS
ACTTAATGTTGGAATTCGGA+GGG	0.629032	7_4:+61629832	Msa1168800:CDS
AGCGTTTCGGCACAATATCT+AGG	0.559188	7_4:-61629605	None:intergenic
AGGATGTACATGGTGAAAAG+TGG	0.579569	7_4:+61629681	Msa1168800:CDS
AGTGACAAGAAACTTGCTTC+TGG	0.385156	7_4:+61629773	Msa1168800:CDS
AGTTTCTTGTCACTGACATA+TGG	0.394738	7_4:-61629764	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAACAGTGAACTTAATGT+TGG	+	chr7_4:61629821-61629840	Msa1168800:CDS	30.0%
GTGAACTTAATGTTGGAATT+CGG	+	chr7_4:61629828-61629847	Msa1168800:CDS	30.0%
ATGAAGTGTATGCAAAACTC+AGG	+	chr7_4:61629438-61629457	Msa1168800:CDS	35.0%
GCATTTCAGGCATGTTTATA+GGG	+	chr7_4:61629703-61629722	Msa1168800:CDS	35.0%
CATTTCAGGCATGTTTATAG+GGG	+	chr7_4:61629704-61629723	Msa1168800:CDS	35.0%
AGTTTCTTGTCACTGACATA+TGG	-	chr7_4:61629767-61629786	None:intergenic	35.0%
AACTTAATGTTGGAATTCGG+AGG	+	chr7_4:61629831-61629850	Msa1168800:CDS	35.0%
ACTTAATGTTGGAATTCGGA+GGG	+	chr7_4:61629832-61629851	Msa1168800:CDS	35.0%
GCTAAAAGGCGAAATAATGT+TGG	+	chr7_4:61629854-61629873	Msa1168800:CDS	35.0%
GTTTGCATCAGATTGTGTCA+AGG	-	chr7_4:61629564-61629583	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	61629419	61629955	61629419	ID=Msa1168800;Name=Msa1168800
chr7_4	mRNA	61629419	61629955	61629419	ID=Msa1168800-mRNA-1;Parent=Msa1168800;Name=Msa1168800-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|178
chr7_4	exon	61629419	61629955	61629419	ID=Msa1168800-mRNA-1:exon:19475;Parent=Msa1168800-mRNA-1
chr7_4	CDS	61629419	61629955	61629419	ID=Msa1168800-mRNA-1:cds;Parent=Msa1168800-mRNA-1

Gene Sequence

>Msa1168800

ATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACACTGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCCGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTTTTCAGGACATCTATCCCAAGGATGTACATGGTGAAAAGTGGCATTTCAGGCATGTTTATAGGGGCACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCATATGTCAGTGACAAGAAACTTGCTTCTGGGGATTCAATTGTGTTTTTGAGATCTGAAAACAGTGAACTTAATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCAATCCTTTGTCAGGGTGGAAATTTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATAG

Protein sequence

>Msa1168800

MANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANTGGGFSCPRYCAETLFPRLDYSANPPFQDIYPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPYVSDKKLASGDSIVFLRSENSELNVGIRRAKRRNNVGVNPLSGWKFGSGIGICPAPPYGGFP*