Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168870 | XP_024625181.1 | 94.944 | 178 | 9 | 0 | 1 | 178 | 87 | 264 | 4.51e-119 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168870 | sp|Q9SKN5|ARFJ_ARATH | 64.286 | 154 | 49 | 1 | 1 | 148 | 65 | 218 | 8.38e-63 | 208 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168870 | A0A396H9J8 | 94.944 | 178 | 9 | 0 | 1 | 178 | 87 | 264 | 2.43e-119 | 359 |
Gene ID | Type | Classification |
---|---|---|
Msa1168870 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168870 | MtrunA17_Chr7g0264171 | 94.944 | 178 | 9 | 0 | 1 | 178 | 87 | 264 | 4.67e-123 | 359 |
Msa1168870 | MtrunA17_Chr7g0264161 | 88.750 | 160 | 18 | 0 | 1 | 160 | 48 | 207 | 5.61e-104 | 300 |
Msa1168870 | MtrunA17_Chr2g0326761 | 61.932 | 176 | 62 | 2 | 1 | 176 | 67 | 237 | 1.58e-67 | 218 |
Msa1168870 | MtrunA17_Chr1g0199681 | 66.892 | 148 | 49 | 0 | 1 | 148 | 149 | 296 | 1.97e-65 | 212 |
Msa1168870 | MtrunA17_Chr1g0181211 | 68.627 | 153 | 40 | 2 | 1 | 148 | 83 | 232 | 1.87e-64 | 209 |
Msa1168870 | MtrunA17_Chr4g0028971 | 59.444 | 180 | 69 | 3 | 1 | 177 | 66 | 244 | 1.17e-61 | 202 |
Msa1168870 | MtrunA17_Chr3g0115271 | 56.000 | 150 | 59 | 2 | 1 | 148 | 76 | 220 | 1.70e-50 | 171 |
Msa1168870 | MtrunA17_Chr8g0389081 | 51.333 | 150 | 67 | 2 | 2 | 149 | 95 | 240 | 8.38e-46 | 160 |
Msa1168870 | MtrunA17_Chr1g0156321 | 49.669 | 151 | 73 | 1 | 2 | 152 | 106 | 253 | 1.21e-45 | 159 |
Msa1168870 | MtrunA17_Chr4g0070181 | 48.000 | 150 | 72 | 2 | 2 | 149 | 85 | 230 | 7.63e-44 | 154 |
Msa1168870 | MtrunA17_Chr2g0301251 | 48.667 | 150 | 71 | 2 | 2 | 149 | 85 | 230 | 2.27e-43 | 153 |
Msa1168870 | MtrunA17_Chr5g0424931 | 50.667 | 150 | 60 | 2 | 1 | 145 | 78 | 218 | 1.27e-42 | 149 |
Msa1168870 | MtrunA17_Chr2g0285461 | 47.368 | 152 | 76 | 2 | 2 | 152 | 86 | 234 | 1.12e-41 | 148 |
Msa1168870 | MtrunA17_Chr2g0282961 | 48.026 | 152 | 72 | 1 | 2 | 146 | 108 | 259 | 4.03e-41 | 145 |
Msa1168870 | MtrunA17_Chr2g0289221 | 48.344 | 151 | 72 | 3 | 1 | 148 | 80 | 227 | 4.68e-41 | 141 |
Msa1168870 | MtrunA17_Chr4g0029671 | 47.799 | 159 | 75 | 1 | 1 | 151 | 114 | 272 | 3.50e-40 | 144 |
Msa1168870 | MtrunA17_Chr2g0276781 | 47.020 | 151 | 75 | 2 | 2 | 151 | 85 | 231 | 3.98e-40 | 143 |
Msa1168870 | MtrunA17_Chr3g0109391 | 47.712 | 153 | 74 | 3 | 2 | 152 | 89 | 237 | 4.09e-40 | 144 |
Msa1168870 | MtrunA17_Chr5g0433301 | 47.059 | 153 | 75 | 3 | 2 | 152 | 87 | 235 | 4.97e-40 | 144 |
Msa1168870 | MtrunA17_Chr5g0417281 | 46.753 | 154 | 69 | 3 | 1 | 148 | 70 | 216 | 8.61e-40 | 141 |
Msa1168870 | MtrunA17_Chr8g0376771 | 46.309 | 149 | 74 | 2 | 2 | 148 | 85 | 229 | 1.93e-39 | 142 |
Msa1168870 | MtrunA17_Chr4g0046371 | 42.614 | 176 | 89 | 2 | 2 | 165 | 94 | 269 | 3.01e-39 | 141 |
Msa1168870 | MtrunA17_Chr2g0326281 | 44.767 | 172 | 74 | 3 | 1 | 151 | 116 | 287 | 4.27e-39 | 141 |
Msa1168870 | MtrunA17_Chr4g0009751 | 46.667 | 150 | 75 | 2 | 1 | 149 | 80 | 225 | 1.87e-38 | 138 |
Msa1168870 | MtrunA17_Chr8g0385791 | 44.643 | 168 | 86 | 4 | 2 | 166 | 121 | 284 | 3.29e-38 | 138 |
Msa1168870 | MtrunA17_Chr8g0346711 | 46.053 | 152 | 77 | 2 | 1 | 151 | 90 | 237 | 3.49e-37 | 135 |
Msa1168870 | MtrunA17_Chr7g0239061 | 45.833 | 144 | 75 | 2 | 1 | 144 | 75 | 215 | 1.17e-36 | 134 |
Msa1168870 | MtrunA17_Chr5g0417211 | 46.154 | 156 | 68 | 3 | 1 | 147 | 71 | 219 | 4.60e-36 | 129 |
Msa1168870 | MtrunA17_Chr5g0436761 | 43.949 | 157 | 71 | 3 | 1 | 147 | 71 | 220 | 2.00e-33 | 123 |
Msa1168870 | MtrunA17_Chr1g0178011 | 42.568 | 148 | 77 | 2 | 1 | 145 | 71 | 213 | 4.45e-33 | 122 |
Msa1168870 | MtrunA17_Chr2g0277461 | 42.466 | 146 | 81 | 3 | 1 | 145 | 74 | 217 | 2.51e-32 | 120 |
Msa1168870 | MtrunA17_Chr5g0425661 | 38.028 | 142 | 70 | 3 | 1 | 133 | 93 | 225 | 6.56e-26 | 99.4 |
Msa1168870 | MtrunA17_Chr8g0356211 | 41.414 | 99 | 58 | 0 | 53 | 151 | 2 | 100 | 9.13e-25 | 97.8 |
Msa1168870 | MtrunA17_Chr2g0277531 | 37.838 | 148 | 85 | 5 | 1 | 145 | 81 | 224 | 2.72e-22 | 91.3 |
Msa1168870 | MtrunA17_Chr5g0424801 | 33.333 | 147 | 73 | 5 | 6 | 145 | 76 | 204 | 1.22e-17 | 79.0 |
Msa1168870 | MtrunA17_Chr5g0425261 | 32.000 | 150 | 77 | 5 | 6 | 148 | 76 | 207 | 1.41e-15 | 73.2 |
Msa1168870 | MtrunA17_Chr5g0424741 | 31.395 | 172 | 89 | 6 | 1 | 145 | 71 | 240 | 2.16e-15 | 73.2 |
Msa1168870 | MtrunA17_Chr8g0345771 | 30.709 | 127 | 83 | 2 | 40 | 162 | 167 | 292 | 9.95e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1168870 | AT2G28350.2 | 64.286 | 154 | 49 | 1 | 1 | 148 | 65 | 218 | 6.01e-64 | 208 |
Msa1168870 | AT2G28350.1 | 64.286 | 154 | 49 | 1 | 1 | 148 | 65 | 218 | 8.52e-64 | 208 |
Msa1168870 | AT4G30080.1 | 60.119 | 168 | 58 | 3 | 1 | 159 | 74 | 241 | 7.82e-61 | 200 |
Msa1168870 | AT1G77850.1 | 51.351 | 148 | 70 | 1 | 1 | 146 | 73 | 220 | 2.64e-47 | 162 |
Msa1168870 | AT1G77850.2 | 51.351 | 148 | 70 | 1 | 1 | 146 | 73 | 220 | 3.02e-47 | 162 |
Msa1168870 | AT1G19220.1 | 50.000 | 150 | 69 | 2 | 2 | 149 | 85 | 230 | 3.32e-44 | 156 |
Msa1168870 | AT5G20730.3 | 48.344 | 151 | 72 | 2 | 2 | 150 | 86 | 232 | 2.89e-43 | 153 |
Msa1168870 | AT5G20730.2 | 48.344 | 151 | 72 | 2 | 2 | 150 | 86 | 232 | 3.16e-43 | 153 |
Msa1168870 | AT5G20730.1 | 48.344 | 151 | 72 | 2 | 2 | 150 | 86 | 232 | 3.22e-43 | 153 |
Msa1168870 | AT1G19850.2 | 48.344 | 151 | 76 | 1 | 2 | 152 | 106 | 254 | 1.27e-42 | 151 |
Msa1168870 | AT1G19850.1 | 48.344 | 151 | 76 | 1 | 2 | 152 | 117 | 265 | 1.32e-42 | 151 |
Msa1168870 | AT1G30330.1 | 49.007 | 151 | 75 | 2 | 2 | 152 | 86 | 234 | 7.90e-41 | 146 |
Msa1168870 | AT1G30330.3 | 49.007 | 151 | 75 | 2 | 2 | 152 | 88 | 236 | 8.29e-41 | 146 |
Msa1168870 | AT1G30330.2 | 49.007 | 151 | 75 | 2 | 2 | 152 | 88 | 236 | 8.29e-41 | 146 |
Msa1168870 | AT5G37020.2 | 47.059 | 153 | 75 | 3 | 2 | 152 | 85 | 233 | 1.05e-40 | 145 |
Msa1168870 | AT5G37020.1 | 47.059 | 153 | 75 | 3 | 2 | 152 | 85 | 233 | 1.32e-40 | 145 |
Msa1168870 | AT5G60450.2 | 46.541 | 159 | 77 | 2 | 1 | 151 | 101 | 259 | 1.46e-40 | 145 |
Msa1168870 | AT5G60450.1 | 46.541 | 159 | 77 | 2 | 1 | 151 | 125 | 283 | 1.62e-40 | 145 |
Msa1168870 | AT1G59750.4 | 49.333 | 150 | 73 | 3 | 2 | 151 | 84 | 230 | 1.22e-39 | 142 |
Msa1168870 | AT1G59750.2 | 49.333 | 150 | 73 | 3 | 2 | 151 | 84 | 230 | 1.22e-39 | 142 |
Msa1168870 | AT1G59750.1 | 49.333 | 150 | 73 | 3 | 2 | 151 | 84 | 230 | 1.28e-39 | 142 |
Msa1168870 | AT1G59750.3 | 49.333 | 150 | 73 | 3 | 2 | 151 | 84 | 230 | 1.28e-39 | 142 |
Msa1168870 | AT2G33860.1 | 44.805 | 154 | 78 | 1 | 2 | 148 | 109 | 262 | 2.92e-39 | 141 |
Msa1168870 | AT3G61830.1 | 44.156 | 154 | 77 | 2 | 2 | 152 | 88 | 235 | 6.41e-38 | 137 |
Msa1168870 | AT3G61830.2 | 45.333 | 150 | 79 | 1 | 2 | 151 | 37 | 183 | 2.78e-37 | 135 |
Msa1168870 | AT5G62000.2 | 42.857 | 168 | 89 | 3 | 2 | 166 | 123 | 286 | 2.99e-37 | 136 |
Msa1168870 | AT5G62000.5 | 42.857 | 168 | 89 | 3 | 2 | 166 | 123 | 286 | 2.99e-37 | 136 |
Msa1168870 | AT5G62000.3 | 42.857 | 168 | 89 | 3 | 2 | 166 | 123 | 286 | 2.99e-37 | 136 |
Msa1168870 | AT5G62000.1 | 42.857 | 168 | 89 | 3 | 2 | 166 | 123 | 286 | 2.99e-37 | 136 |
Msa1168870 | AT5G62000.4 | 45.033 | 151 | 77 | 2 | 2 | 150 | 123 | 269 | 3.29e-37 | 136 |
Msa1168870 | AT5G37020.3 | 53.704 | 108 | 50 | 0 | 45 | 152 | 31 | 138 | 5.38e-37 | 135 |
Msa1168870 | AT4G23980.2 | 45.890 | 146 | 75 | 2 | 2 | 146 | 75 | 217 | 7.25e-37 | 134 |
Msa1168870 | AT4G23980.1 | 45.890 | 146 | 75 | 2 | 2 | 146 | 75 | 217 | 7.77e-37 | 134 |
Msa1168870 | AT2G46530.1 | 40.828 | 169 | 90 | 3 | 2 | 166 | 84 | 246 | 1.55e-36 | 133 |
Msa1168870 | AT2G46530.3 | 40.828 | 169 | 90 | 3 | 2 | 166 | 105 | 267 | 1.60e-36 | 133 |
Msa1168870 | AT2G33860.2 | 55.769 | 104 | 46 | 0 | 45 | 148 | 2 | 105 | 1.75e-36 | 131 |
Msa1168870 | AT1G35520.1 | 45.517 | 145 | 73 | 2 | 6 | 150 | 93 | 231 | 5.28e-34 | 126 |
Msa1168870 | AT1G35540.1 | 46.099 | 141 | 70 | 2 | 6 | 146 | 93 | 227 | 1.32e-33 | 125 |
Msa1168870 | AT1G34310.1 | 43.448 | 145 | 76 | 1 | 6 | 150 | 93 | 231 | 4.40e-33 | 124 |
Msa1168870 | AT1G35240.1 | 43.448 | 145 | 76 | 1 | 6 | 150 | 93 | 231 | 7.87e-33 | 123 |
Msa1168870 | AT1G34410.1 | 44.898 | 147 | 71 | 2 | 6 | 150 | 93 | 231 | 1.26e-32 | 122 |
Msa1168870 | AT2G46530.2 | 44.355 | 124 | 68 | 1 | 44 | 166 | 36 | 159 | 4.11e-32 | 120 |
Msa1168870 | AT1G34390.1 | 44.681 | 141 | 70 | 2 | 6 | 146 | 93 | 225 | 1.62e-31 | 119 |
Msa1168870 | AT1G34170.2 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 3.06e-28 | 109 |
Msa1168870 | AT1G34170.1 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 3.48e-28 | 109 |
Msa1168870 | AT1G34170.3 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 4.55e-28 | 109 |
Msa1168870 | AT1G43950.1 | 39.568 | 139 | 75 | 4 | 6 | 144 | 93 | 222 | 3.41e-23 | 92.0 |
Msa1168870 | AT2G46870.1 | 36.082 | 97 | 61 | 1 | 37 | 133 | 27 | 122 | 3.04e-13 | 66.6 |
Msa1168870 | AT3G25730.1 | 30.952 | 126 | 70 | 2 | 45 | 168 | 183 | 293 | 2.42e-11 | 61.6 |
Msa1168870 | AT4G01500.1 | 31.200 | 125 | 73 | 4 | 18 | 133 | 1 | 121 | 2.79e-11 | 61.2 |
Msa1168870 | AT1G01030.2 | 34.545 | 110 | 66 | 2 | 40 | 144 | 51 | 159 | 3.69e-11 | 60.8 |
Msa1168870 | AT1G01030.1 | 34.545 | 110 | 66 | 2 | 40 | 144 | 51 | 159 | 5.07e-11 | 60.5 |
Find 48 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTTGTCAGGGTGGAAATT+TGG | 0.238329 | 7_4:+61754708 | Msa1168870:CDS |
CATCAACGTGTCTGAAATTA+AGG | 0.241218 | 7_4:+61754338 | Msa1168870:CDS |
GCATTTCAGGCATGTTTATA+GGG | 0.274751 | 7_4:+61754527 | Msa1168870:CDS |
GGCATTTCAGGCATGTTTAT+AGG | 0.293252 | 7_4:+61754526 | Msa1168870:CDS |
ATGGTGAAAAGTGGCATTTC+AGG | 0.316984 | 7_4:+61754514 | Msa1168870:CDS |
TGGAAATTTGGTAGTGGAAT+TGG | 0.321491 | 7_4:+61754720 | Msa1168870:CDS |
TTCAGCTAACCCTCCTCTTC+AGG | 0.361334 | 7_4:+61754470 | Msa1168870:CDS |
TTGGAATTCGGAGGGCTAAA+AGG | 0.363443 | 7_4:+61754664 | Msa1168870:CDS |
TTTGATAATGATGGTGTTGC+TGG | 0.376636 | 7_4:+61754315 | Msa1168870:CDS |
AGTGACAAGAAACTTGCTTC+TGG | 0.385156 | 7_4:+61754597 | Msa1168870:CDS |
CTAACTTGGTTAATATTCAT+AGG | 0.385591 | 7_4:-61754291 | None:intergenic |
AAGAGGCATTTGTTGACAAC+TGG | 0.392584 | 7_4:+61754558 | Msa1168870:CDS |
AGTTTCTTGTCACTGACATA+TGG | 0.394738 | 7_4:-61754588 | None:intergenic |
GTTGGAGTCAATCCTTTGTC+AGG | 0.400283 | 7_4:+61754696 | Msa1168870:CDS |
GTGAACTTAATGTTGGAATT+CGG | 0.402297 | 7_4:+61754652 | Msa1168870:CDS |
GTGACAAGAAACTTGCTTCT+GGG | 0.423889 | 7_4:+61754598 | Msa1168870:CDS |
CATCATTATCAAAACTAACT+TGG | 0.449861 | 7_4:-61754305 | None:intergenic |
GTTGTCAACAAATGCCTCTT+CGG | 0.456311 | 7_4:-61754555 | None:intergenic |
ATTTGTCCTGCACCACCTTA+CGG | 0.476461 | 7_4:+61754744 | Msa1168870:CDS |
GAAAACAGTGAACTTAATGT+TGG | 0.494744 | 7_4:+61754645 | Msa1168870:CDS |
TCAGGGTGGAAATTTGGTAG+TGG | 0.505938 | 7_4:+61754714 | Msa1168870:CDS |
AATCCTCCGTAAGGTGGTGC+AGG | 0.533772 | 7_4:-61754750 | None:intergenic |
AGCGTTTCTGCACAATATCT+AGG | 0.540389 | 7_4:-61754429 | None:intergenic |
TGACAAGAAACTTGCTTCTG+GGG | 0.545499 | 7_4:+61754599 | Msa1168870:CDS |
CCAAATTTCCACCCTGACAA+AGG | 0.546733 | 7_4:-61754708 | None:intergenic |
GCTAAAAGGCGAAATAATGT+TGG | 0.555377 | 7_4:+61754678 | Msa1168870:CDS |
CATTTCAGGCATGTTTATAG+GGG | 0.556177 | 7_4:+61754528 | Msa1168870:CDS |
AACTATGGAAATCCTCCGTA+AGG | 0.559080 | 7_4:-61754759 | None:intergenic |
GGCATTTGTTGACAACTGGA+TGG | 0.569244 | 7_4:+61754562 | Msa1168870:CDS |
AACTTAATGTTGGAATTCGG+AGG | 0.572730 | 7_4:+61754655 | Msa1168870:CDS |
AGGATGTACATGGTGAAAAG+TGG | 0.579569 | 7_4:+61754505 | Msa1168870:CDS |
GGATAGATGTCCTGAAGAGG+AGG | 0.591495 | 7_4:-61754480 | None:intergenic |
ATCTATCCCAAGGATGTACA+TGG | 0.592936 | 7_4:+61754495 | Msa1168870:CDS |
TTGGAGTCAATCCTTTGTCA+GGG | 0.598239 | 7_4:+61754697 | Msa1168870:CDS |
GTTTGCATCAGATTGTGTCA+AGG | 0.603398 | 7_4:-61754385 | None:intergenic |
ATGAAGTGTATGCAAAACTC+AGG | 0.607388 | 7_4:+61754262 | Msa1168870:CDS |
TTTATAGGGGCACGCCGAAG+AGG | 0.616360 | 7_4:+61754541 | Msa1168870:CDS |
TCTTCAGGACATCTATCCCA+AGG | 0.626591 | 7_4:+61754485 | Msa1168870:CDS |
ACTTAATGTTGGAATTCGGA+GGG | 0.629032 | 7_4:+61754656 | Msa1168870:CDS |
TTGGGATAGATGTCCTGAAG+AGG | 0.634276 | 7_4:-61754483 | None:intergenic |
TATGGAAATCCTCCGTAAGG+TGG | 0.634599 | 7_4:-61754756 | None:intergenic |
TCTGATGCAAACAATGGTGG+TGG | 0.655667 | 7_4:+61754396 | Msa1168870:CDS |
GAGTCAATCCTTTGTCAGGG+TGG | 0.657457 | 7_4:+61754700 | Msa1168870:CDS |
TGTCCTGCACCACCTTACGG+AGG | 0.685773 | 7_4:+61754747 | Msa1168870:CDS |
GATAGATGTCCTGAAGAGGA+GGG | 0.691087 | 7_4:-61754479 | None:intergenic |
ACACAATCTGATGCAAACAA+TGG | 0.696099 | 7_4:+61754390 | Msa1168870:CDS |
CAATCTGATGCAAACAATGG+TGG | 0.722659 | 7_4:+61754393 | Msa1168870:CDS |
TTAGCTGAATAGTCCAAACG+AGG | 0.756003 | 7_4:-61754456 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | CTAACTTGGTTAATATTCAT+AGG | - | chr7_4:61754294-61754313 | None:intergenic | 25.0% |
! | CATCATTATCAAAACTAACT+TGG | - | chr7_4:61754308-61754327 | None:intergenic | 25.0% |
!!! | CAAGTTAGTTTTGATAATGA+TGG | + | chr7_4:61754306-61754325 | Msa1168870:CDS | 25.0% |
GAAAACAGTGAACTTAATGT+TGG | + | chr7_4:61754645-61754664 | Msa1168870:CDS | 30.0% | |
GTGAACTTAATGTTGGAATT+CGG | + | chr7_4:61754652-61754671 | Msa1168870:CDS | 30.0% | |
! | GAGTTTTGCATACACTTCAT+CGG | - | chr7_4:61754262-61754281 | None:intergenic | 35.0% |
ATGAAGTGTATGCAAAACTC+AGG | + | chr7_4:61754262-61754281 | Msa1168870:CDS | 35.0% | |
!! | TTTGATAATGATGGTGTTGC+TGG | + | chr7_4:61754315-61754334 | Msa1168870:CDS | 35.0% |
! | CATCAACGTGTCTGAAATTA+AGG | + | chr7_4:61754338-61754357 | Msa1168870:CDS | 35.0% |
ACACAATCTGATGCAAACAA+TGG | + | chr7_4:61754390-61754409 | Msa1168870:CDS | 35.0% | |
! | TTTTCACCATGTACATCCTT+GGG | - | chr7_4:61754504-61754523 | None:intergenic | 35.0% |
GCATTTCAGGCATGTTTATA+GGG | + | chr7_4:61754527-61754546 | Msa1168870:CDS | 35.0% | |
CATTTCAGGCATGTTTATAG+GGG | + | chr7_4:61754528-61754547 | Msa1168870:CDS | 35.0% | |
AGTTTCTTGTCACTGACATA+TGG | - | chr7_4:61754591-61754610 | None:intergenic | 35.0% | |
AACTTAATGTTGGAATTCGG+AGG | + | chr7_4:61754655-61754674 | Msa1168870:CDS | 35.0% | |
ACTTAATGTTGGAATTCGGA+GGG | + | chr7_4:61754656-61754675 | Msa1168870:CDS | 35.0% | |
GCTAAAAGGCGAAATAATGT+TGG | + | chr7_4:61754678-61754697 | Msa1168870:CDS | 35.0% | |
!! | TGGAAATTTGGTAGTGGAAT+TGG | + | chr7_4:61754720-61754739 | Msa1168870:CDS | 35.0% |
GTTTGCATCAGATTGTGTCA+AGG | - | chr7_4:61754388-61754407 | None:intergenic | 40.0% | |
CAATCTGATGCAAACAATGG+TGG | + | chr7_4:61754393-61754412 | Msa1168870:CDS | 40.0% | |
AGCGTTTCTGCACAATATCT+AGG | - | chr7_4:61754432-61754451 | None:intergenic | 40.0% | |
!!! | AGAAACGCTTTTTCCTCGTT+TGG | + | chr7_4:61754443-61754462 | Msa1168870:CDS | 40.0% |
TTAGCTGAATAGTCCAAACG+AGG | - | chr7_4:61754459-61754478 | None:intergenic | 40.0% | |
ATCTATCCCAAGGATGTACA+TGG | + | chr7_4:61754495-61754514 | Msa1168870:CDS | 40.0% | |
! | CTTTTCACCATGTACATCCT+TGG | - | chr7_4:61754505-61754524 | None:intergenic | 40.0% |
AGGATGTACATGGTGAAAAG+TGG | + | chr7_4:61754505-61754524 | Msa1168870:CDS | 40.0% | |
ATGGTGAAAAGTGGCATTTC+AGG | + | chr7_4:61754514-61754533 | Msa1168870:CDS | 40.0% | |
GGCATTTCAGGCATGTTTAT+AGG | + | chr7_4:61754526-61754545 | Msa1168870:CDS | 40.0% | |
GTTGTCAACAAATGCCTCTT+CGG | - | chr7_4:61754558-61754577 | None:intergenic | 40.0% | |
!! | AAGAGGCATTTGTTGACAAC+TGG | + | chr7_4:61754558-61754577 | Msa1168870:CDS | 40.0% |
! | AGTGACAAGAAACTTGCTTC+TGG | + | chr7_4:61754597-61754616 | Msa1168870:CDS | 40.0% |
! | GTGACAAGAAACTTGCTTCT+GGG | + | chr7_4:61754598-61754617 | Msa1168870:CDS | 40.0% |
! | TGACAAGAAACTTGCTTCTG+GGG | + | chr7_4:61754599-61754618 | Msa1168870:CDS | 40.0% |
TTGGAGTCAATCCTTTGTCA+GGG | + | chr7_4:61754697-61754716 | Msa1168870:CDS | 40.0% | |
TCTGATGCAAACAATGGTGG+TGG | + | chr7_4:61754396-61754415 | Msa1168870:CDS | 45.0% | |
GATAGATGTCCTGAAGAGGA+GGG | - | chr7_4:61754482-61754501 | None:intergenic | 45.0% | |
TTGGGATAGATGTCCTGAAG+AGG | - | chr7_4:61754486-61754505 | None:intergenic | 45.0% | |
TCTTCAGGACATCTATCCCA+AGG | + | chr7_4:61754485-61754504 | Msa1168870:CDS | 45.0% | |
! | GGCATTTGTTGACAACTGGA+TGG | + | chr7_4:61754562-61754581 | Msa1168870:CDS | 45.0% |
TTGGAATTCGGAGGGCTAAA+AGG | + | chr7_4:61754664-61754683 | Msa1168870:CDS | 45.0% | |
GTTGGAGTCAATCCTTTGTC+AGG | + | chr7_4:61754696-61754715 | Msa1168870:CDS | 45.0% | |
CCAAATTTCCACCCTGACAA+AGG | - | chr7_4:61754711-61754730 | None:intergenic | 45.0% | |
CCTTTGTCAGGGTGGAAATT+TGG | + | chr7_4:61754708-61754727 | Msa1168870:CDS | 45.0% | |
TCAGGGTGGAAATTTGGTAG+TGG | + | chr7_4:61754714-61754733 | Msa1168870:CDS | 45.0% | |
ATTTGTCCTGCACCACCTTA+CGG | + | chr7_4:61754744-61754763 | Msa1168870:CDS | 45.0% | |
TATGGAAATCCTCCGTAAGG+TGG | - | chr7_4:61754759-61754778 | None:intergenic | 45.0% | |
TTCAGCTAACCCTCCTCTTC+AGG | + | chr7_4:61754470-61754489 | Msa1168870:CDS | 50.0% | |
GGATAGATGTCCTGAAGAGG+AGG | - | chr7_4:61754483-61754502 | None:intergenic | 50.0% | |
GAGTCAATCCTTTGTCAGGG+TGG | + | chr7_4:61754700-61754719 | Msa1168870:CDS | 50.0% | |
! | TTTATAGGGGCACGCCGAAG+AGG | + | chr7_4:61754541-61754560 | Msa1168870:CDS | 55.0% |
AATCCTCCGTAAGGTGGTGC+AGG | - | chr7_4:61754753-61754772 | None:intergenic | 55.0% | |
TGTCCTGCACCACCTTACGG+AGG | + | chr7_4:61754747-61754766 | Msa1168870:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 61754243 | 61754779 | 61754243 | ID=Msa1168870;Name=Msa1168870 |
chr7_4 | mRNA | 61754243 | 61754779 | 61754243 | ID=Msa1168870-mRNA-1;Parent=Msa1168870;Name=Msa1168870-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|178 |
chr7_4 | exon | 61754243 | 61754779 | 61754243 | ID=Msa1168870-mRNA-1:exon:19497;Parent=Msa1168870-mRNA-1 |
chr7_4 | CDS | 61754243 | 61754779 | 61754243 | ID=Msa1168870-mRNA-1:cds;Parent=Msa1168870-mRNA-1 |
Gene Sequence |
Protein sequence |