AlfalfaGEDB | Msa1168870

M. sativa cultivar zhongmu-4 / Msa1168870

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168870	XP_024625181.1	94.944	178	9	0	1	178	87	264	4.51e-119	360

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168870	sp\|Q9SKN5\|ARFJ_ARATH	64.286	154	49	1	1	148	65	218	8.38e-63	208

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168870	A0A396H9J8	94.944	178	9	0	1	178	87	264	2.43e-119	359

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TFs/TRs:

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Gene ID	Type	Classification
Msa1168870	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168870	MtrunA17_Chr7g0264171	94.944	178	9	0	1	178	87	264	4.67e-123	359
Msa1168870	MtrunA17_Chr7g0264161	88.750	160	18	0	1	160	48	207	5.61e-104	300
Msa1168870	MtrunA17_Chr2g0326761	61.932	176	62	2	1	176	67	237	1.58e-67	218
Msa1168870	MtrunA17_Chr1g0199681	66.892	148	49	0	1	148	149	296	1.97e-65	212
Msa1168870	MtrunA17_Chr1g0181211	68.627	153	40	2	1	148	83	232	1.87e-64	209
Msa1168870	MtrunA17_Chr4g0028971	59.444	180	69	3	1	177	66	244	1.17e-61	202
Msa1168870	MtrunA17_Chr3g0115271	56.000	150	59	2	1	148	76	220	1.70e-50	171
Msa1168870	MtrunA17_Chr8g0389081	51.333	150	67	2	2	149	95	240	8.38e-46	160
Msa1168870	MtrunA17_Chr1g0156321	49.669	151	73	1	2	152	106	253	1.21e-45	159
Msa1168870	MtrunA17_Chr4g0070181	48.000	150	72	2	2	149	85	230	7.63e-44	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1168870	AT2G28350.2	64.286	154	49	1	1	148	65	218	6.01e-64	208
Msa1168870	AT2G28350.1	64.286	154	49	1	1	148	65	218	8.52e-64	208
Msa1168870	AT4G30080.1	60.119	168	58	3	1	159	74	241	7.82e-61	200
Msa1168870	AT1G77850.1	51.351	148	70	1	1	146	73	220	2.64e-47	162
Msa1168870	AT1G77850.2	51.351	148	70	1	1	146	73	220	3.02e-47	162
Msa1168870	AT1G19220.1	50.000	150	69	2	2	149	85	230	3.32e-44	156
Msa1168870	AT5G20730.3	48.344	151	72	2	2	150	86	232	2.89e-43	153
Msa1168870	AT5G20730.2	48.344	151	72	2	2	150	86	232	3.16e-43	153
Msa1168870	AT5G20730.1	48.344	151	72	2	2	150	86	232	3.22e-43	153
Msa1168870	AT1G19850.2	48.344	151	76	1	2	152	106	254	1.27e-42	151

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Find 48 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTATGGAAATCCTCCGTA+AGG	0.559080	7_4:-61754759	None:intergenic
AACTTAATGTTGGAATTCGG+AGG	0.572730	7_4:+61754655	Msa1168870:CDS
AAGAGGCATTTGTTGACAAC+TGG	0.392584	7_4:+61754558	Msa1168870:CDS
AATCCTCCGTAAGGTGGTGC+AGG	0.533772	7_4:-61754750	None:intergenic
ACACAATCTGATGCAAACAA+TGG	0.696099	7_4:+61754390	Msa1168870:CDS
ACTTAATGTTGGAATTCGGA+GGG	0.629032	7_4:+61754656	Msa1168870:CDS
AGCGTTTCTGCACAATATCT+AGG	0.540389	7_4:-61754429	None:intergenic
AGGATGTACATGGTGAAAAG+TGG	0.579569	7_4:+61754505	Msa1168870:CDS
AGTGACAAGAAACTTGCTTC+TGG	0.385156	7_4:+61754597	Msa1168870:CDS
AGTTTCTTGTCACTGACATA+TGG	0.394738	7_4:-61754588	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAACAGTGAACTTAATGT+TGG	+	chr7_4:61754645-61754664	Msa1168870:CDS	30.0%
GTGAACTTAATGTTGGAATT+CGG	+	chr7_4:61754652-61754671	Msa1168870:CDS	30.0%
ATGAAGTGTATGCAAAACTC+AGG	+	chr7_4:61754262-61754281	Msa1168870:CDS	35.0%
ACACAATCTGATGCAAACAA+TGG	+	chr7_4:61754390-61754409	Msa1168870:CDS	35.0%
GCATTTCAGGCATGTTTATA+GGG	+	chr7_4:61754527-61754546	Msa1168870:CDS	35.0%
CATTTCAGGCATGTTTATAG+GGG	+	chr7_4:61754528-61754547	Msa1168870:CDS	35.0%
AGTTTCTTGTCACTGACATA+TGG	-	chr7_4:61754591-61754610	None:intergenic	35.0%
AACTTAATGTTGGAATTCGG+AGG	+	chr7_4:61754655-61754674	Msa1168870:CDS	35.0%
ACTTAATGTTGGAATTCGGA+GGG	+	chr7_4:61754656-61754675	Msa1168870:CDS	35.0%
GCTAAAAGGCGAAATAATGT+TGG	+	chr7_4:61754678-61754697	Msa1168870:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	61754243	61754779	61754243	ID=Msa1168870;Name=Msa1168870
chr7_4	mRNA	61754243	61754779	61754243	ID=Msa1168870-mRNA-1;Parent=Msa1168870;Name=Msa1168870-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|178
chr7_4	exon	61754243	61754779	61754243	ID=Msa1168870-mRNA-1:exon:19497;Parent=Msa1168870-mRNA-1
chr7_4	CDS	61754243	61754779	61754243	ID=Msa1168870-mRNA-1:cds;Parent=Msa1168870-mRNA-1

Gene Sequence

>Msa1168870

ATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGACATCTATCCCAAGGATGTACATGGTGAAAAGTGGCATTTCAGGCATGTTTATAGGGGCACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCATATGTCAGTGACAAGAAACTTGCTTCTGGGGATTCAATTGTGTTTTTGAGATCTGAAAACAGTGAACTTAATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCAATCCTTTGTCAGGGTGGAAATTTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATAG

Protein sequence

>Msa1168870

MANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIYPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPYVSDKKLASGDSIVFLRSENSELNVGIRRAKRRNNVGVNPLSGWKFGSGIGICPAPPYGGFP*