AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169010 MtrunA17_Chr7g0263941 94.840 407 19 2 1 406 1 406 0.0 785
Msa1169010 MtrunA17_Chr1g0181381 57.230 491 102 13 3 387 4 492 9.44e-164 469
Msa1169010 MtrunA17_Chr2g0330171 63.251 283 84 4 33 302 45 320 3.21e-119 354
Msa1169010 MtrunA17_Chr4g0029521 73.756 221 45 6 7 218 6 222 1.99e-115 345
Msa1169010 MtrunA17_Chr8g0342421 56.798 331 104 8 27 329 55 374 1.15e-112 339
Msa1169010 MtrunA17_Chr1g0191991 56.051 314 112 4 34 328 63 369 1.21e-112 340
Msa1169010 MtrunA17_Chr1g0199101 87.500 168 20 1 34 200 47 214 1.87e-112 339
Msa1169010 MtrunA17_Chr4g0040571 83.051 177 29 1 28 204 34 209 1.17e-111 336
Msa1169010 MtrunA17_Chr1g0163001 82.967 182 27 2 23 204 34 211 1.52e-111 337
Msa1169010 MtrunA17_Chr1g0185121 53.936 343 112 7 30 340 36 364 2.56e-110 331
Msa1169010 MtrunA17_Chr1g0162971 82.941 170 29 0 34 203 41 210 4.18e-110 330
Msa1169010 MtrunA17_Chr8g0373541 73.333 210 50 2 11 220 15 218 1.04e-109 332
Msa1169010 MtrunA17_Chr1g0210821 86.875 160 21 0 37 196 47 206 2.03e-108 330
Msa1169010 MtrunA17_Chr1g0151351 61.484 283 86 10 30 308 38 301 1.94e-107 324
Msa1169010 MtrunA17_Chr7g0268961 52.394 355 124 9 44 365 32 374 2.13e-106 322
Msa1169010 MtrunA17_Chr2g0326381 65.823 237 61 7 34 265 32 253 4.48e-105 317
Msa1169010 MtrunA17_Chr3g0141431 46.212 396 156 12 21 373 6 387 1.30e-99 302
Msa1169010 MtrunA17_Chr2g0324991 87.023 131 17 0 45 175 3 133 2.04e-85 256
Msa1169010 MtrunA17_Chr6g0479921 64.557 158 55 1 32 188 27 184 1.58e-74 239
Msa1169010 MtrunA17_Chr8g0375521 64.103 156 54 2 34 187 27 182 1.88e-72 233
Msa1169010 MtrunA17_Chr3g0123941 37.821 156 89 3 39 186 113 268 3.83e-26 107
Msa1169010 MtrunA17_Chr1g0200421 35.762 151 85 4 48 186 236 386 9.80e-25 105
Msa1169010 MtrunA17_Chr2g0320341 34.839 155 87 4 43 183 224 378 1.45e-23 101
Msa1169010 MtrunA17_Chr8g0382121 35.948 153 87 5 42 183 104 256 3.67e-22 96.3
Msa1169010 MtrunA17_Chr5g0422571 34.254 181 102 6 21 191 78 251 6.87e-22 95.1
Msa1169010 MtrunA17_Chr1g0198651 34.503 171 95 5 28 186 84 249 5.11e-21 92.4
Msa1169010 MtrunA17_Chr4g0053341 35.762 151 87 5 45 186 69 218 1.90e-20 89.7
Msa1169010 MtrunA17_Chr4g0026521 36.301 146 83 5 50 186 118 262 1.97e-19 88.2
Msa1169010 MtrunA17_Chr2g0321291 34.054 185 103 8 50 223 133 309 2.47e-19 87.8
Msa1169010 MtrunA17_Chr8g0352011 36.301 146 83 5 50 186 166 310 2.82e-19 88.2
Msa1169010 MtrunA17_Chr7g0258011 34.932 146 85 5 50 186 176 320 5.53e-19 87.4
Msa1169010 MtrunA17_Chr1g0173841 34.932 146 85 5 50 186 215 359 1.53e-18 86.7
Msa1169010 MtrunA17_Chr2g0328921 34.932 146 85 5 50 186 138 282 2.25e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169010 AT5G03150.1 60.841 309 73 9 3 283 4 292 7.05e-116 347
Msa1169010 AT3G50700.1 85.549 173 25 0 24 196 24 196 1.07e-113 340
Msa1169010 AT5G66730.1 75.728 206 43 2 11 209 8 213 8.71e-112 337
Msa1169010 AT5G44160.1 53.239 355 107 9 28 329 32 380 1.42e-111 335
Msa1169010 AT1G55110.3 62.759 290 89 7 30 306 58 341 2.89e-111 334
Msa1169010 AT1G55110.1 62.759 290 89 7 30 306 58 341 2.89e-111 334
Msa1169010 AT1G55110.2 62.759 290 89 7 30 306 58 341 2.89e-111 334
Msa1169010 AT3G45260.2 84.181 177 23 2 33 204 38 214 8.73e-109 327
Msa1169010 AT3G45260.1 84.181 177 23 2 33 204 38 214 8.73e-109 327
Msa1169010 AT1G03840.1 78.610 187 38 2 28 213 36 221 9.65e-109 329
Msa1169010 AT3G13810.6 86.826 167 21 1 31 196 48 214 1.97e-106 323
Msa1169010 AT1G14580.1 82.738 168 26 1 29 196 51 215 2.25e-106 322
Msa1169010 AT1G14580.2 82.738 168 26 1 29 196 51 215 2.25e-106 322
Msa1169010 AT3G13810.4 86.826 167 21 1 31 196 67 233 2.80e-106 323
Msa1169010 AT3G13810.1 86.826 167 21 1 31 196 67 233 2.80e-106 323
Msa1169010 AT3G13810.5 86.826 167 21 1 31 196 62 228 2.87e-106 323
Msa1169010 AT2G02070.2 83.529 170 26 1 34 203 52 219 3.93e-106 325
Msa1169010 AT2G02070.1 83.529 170 26 1 34 203 52 219 3.93e-106 325
Msa1169010 AT1G14580.3 82.738 168 26 1 29 196 65 229 4.12e-106 322
Msa1169010 AT1G03840.2 77.540 187 38 3 28 213 36 219 4.82e-105 320
Msa1169010 AT4G02670.1 81.714 175 31 1 34 207 53 227 5.57e-105 316
Msa1169010 AT2G02080.1 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1169010 AT2G02080.4 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1169010 AT2G02080.5 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1169010 AT2G02080.3 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1169010 AT4G02670.2 81.714 175 31 1 34 207 55 229 6.61e-105 316
Msa1169010 AT5G60470.2 75.521 192 38 3 21 203 24 215 2.54e-104 316
Msa1169010 AT5G60470.3 75.521 192 38 3 21 203 20 211 3.32e-104 316
Msa1169010 AT5G44160.2 52.212 339 104 8 44 329 8 341 1.90e-103 313
Msa1169010 AT3G13810.3 88.235 153 17 1 45 196 68 220 4.04e-98 302
Msa1169010 AT3G13810.2 88.235 153 17 1 45 196 82 234 6.69e-98 301
Msa1169010 AT5G60470.1 80.745 161 29 2 45 203 46 206 7.18e-95 292
Msa1169010 AT2G02080.6 81.295 139 26 0 58 196 1 139 1.74e-88 275
Msa1169010 AT2G02080.2 81.295 139 26 0 58 196 1 139 1.74e-88 275
Msa1169010 AT1G68130.1 56.842 190 74 3 32 219 39 222 7.46e-75 239
Msa1169010 AT1G25250.3 64.780 159 53 2 32 187 31 189 3.51e-74 236
Msa1169010 AT2G01940.1 63.190 163 58 2 32 192 42 204 9.86e-74 237
Msa1169010 AT2G01940.3 62.195 164 59 3 32 192 42 205 3.74e-70 228
Msa1169010 AT1G25250.1 65.306 147 48 2 44 187 20 166 3.45e-69 223
Msa1169010 AT1G68130.2 52.817 142 59 3 80 219 1 136 9.98e-46 160
Msa1169010 AT1G25250.2 62.162 111 39 2 80 187 1 111 2.52e-44 156
Msa1169010 AT2G01940.2 60.870 115 43 2 80 192 1 115 2.75e-44 157
Msa1169010 AT1G34370.3 29.918 244 124 8 43 244 14 252 9.29e-25 103
Msa1169010 AT1G34370.2 29.918 244 124 8 43 244 224 462 3.12e-24 104
Msa1169010 AT1G34370.1 29.918 244 124 8 43 244 224 462 3.12e-24 104
Msa1169010 AT5G22890.1 32.530 166 96 4 35 186 191 354 1.32e-22 99.0
Msa1169010 AT1G13290.1 34.211 152 88 5 55 195 93 243 1.80e-19 88.6
Msa1169010 AT1G08290.1 35.849 159 85 7 44 186 155 312 1.20e-18 86.7
Msa1169010 AT1G34790.1 33.333 180 104 7 47 218 129 300 1.25e-18 86.3
Msa1169010 AT3G20880.1 34.247 146 86 5 50 186 243 387 2.78e-18 86.7
Msa1169010 AT1G51220.1 33.562 146 87 5 50 186 165 309 4.08e-18 85.1
Msa1169010 AT3G57670.1 34.247 146 86 5 50 186 204 348 6.15e-18 85.1

Find 95 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGGCCATATAGTTTA+TGG 0.179946 7_4:+61945472 None:intergenic
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7_4:+61945180 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7_4:-61944816 Msa1169010:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7_4:+61944721 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7_4:-61945267 Msa1169010:exon
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7_4:+61944784 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7_4:+61945164 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7_4:-61943559 Msa1169010:CDS
ACTCATCATCGATGAACTTA+TGG 0.281450 7_4:+61943276 None:intergenic
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7_4:+61945181 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7_4:+61943449 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7_4:+61944995 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7_4:+61944939 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7_4:+61945186 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7_4:-61944870 Msa1169010:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7_4:+61945171 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7_4:+61943821 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7_4:+61945141 None:intergenic
AAACCATGATGAGGTTAATA+TGG 0.368833 7_4:-61943446 Msa1169010:CDS
GCACAACCCCATAAACTATA+TGG 0.369807 7_4:-61945480 Msa1169010:five_prime_UTR
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7_4:-61944815 Msa1169010:CDS
AGGTGAAAACAAAGGCTTAT+TGG 0.372642 7_4:+61945335 None:intergenic
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7_4:+61943838 None:intergenic
TTCAACCACAATGACAAGTT+TGG 0.398343 7_4:+61943697 None:intergenic
AAAGTGGCCATATAGTTTAT+GGG 0.400863 7_4:+61945473 None:intergenic
GCTCTTGAGGTAGAAATTGA+TGG 0.404206 7_4:+61943314 None:intergenic
GAAAACACGGTGAGAAGAAA+TGG 0.409934 7_4:-61944760 Msa1169010:CDS
GTGTCCACCATGATGCGGCC+AGG 0.413040 7_4:-61944823 Msa1169010:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7_4:-61945002 Msa1169010:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7_4:+61944972 None:intergenic
ATCAATATAGTCAACACTTA+AGG 0.424276 7_4:+61943209 None:intergenic
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7_4:+61945187 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7_4:-61944715 Msa1169010:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7_4:+61944836 None:intergenic
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7_4:+61944893 None:intergenic
AGTTTAAATCAATTCAATGC+TGG 0.449709 7_4:-61943256 Msa1169010:CDS
ATGTTTGAGATGAATGAAAA+AGG 0.453554 7_4:-61943130 Msa1169010:three_prime_UTR
TAGTAGTAGTAGTGCAGCTA+TGG 0.457270 7_4:-61943380 Msa1169010:CDS
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7_4:+61944805 None:intergenic
GTGGAAGAGGATAGTGAAAA+GGG 0.470178 7_4:+61945240 None:intergenic
GATAATGTTTGTGATAGTAG+TGG 0.474671 7_4:-61943163 Msa1169010:three_prime_UTR
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7_4:+61945174 None:intergenic
AGAGCAATGACTTCGGCATC+CGG 0.484253 7_4:+61945022 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7_4:-61943363 Msa1169010:CDS
GTTTAAATCAATTCAATGCT+GGG 0.488084 7_4:-61943255 Msa1169010:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7_4:+61944897 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7_4:-61944803 Msa1169010:CDS
GTCAAAACCTCCTGTGGAAG+AGG 0.496517 7_4:+61945227 None:intergenic
TGTGGAAGAGGATAGTGAAA+AGG 0.496596 7_4:+61945239 None:intergenic
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7_4:+61944816 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7_4:-61944822 Msa1169010:CDS
GCAAGCTTTGCTAGCTCTTG+AGG 0.501273 7_4:+61943301 None:intergenic
CTAAATGCTGTAAAAGAGAC+TGG 0.501836 7_4:+61945408 None:intergenic
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7_4:-61943364 Msa1169010:CDS
GCTGTAAAAGAGACTGGCCT+TGG 0.509076 7_4:+61945414 None:intergenic
TAAAAGAGACTGGCCTTGGC+GGG 0.509915 7_4:+61945418 None:intergenic
CATTCATCTCAAACATGCAG+TGG 0.512418 7_4:+61943137 None:intergenic
GTAAAAGAGACTGGCCTTGG+CGG 0.517343 7_4:+61945417 None:intergenic
TGACCATATTAACCTCATCA+TGG 0.523171 7_4:+61943443 None:intergenic
TTAAAACAGCTAAATTTCAA+AGG 0.527522 7_4:+61945297 None:intergenic
TCACTATCCTCTTCCACAGG+AGG 0.530954 7_4:-61945234 Msa1169010:CDS
CAACAATTTAGTCCACATGC+AGG 0.543450 7_4:-61943736 Msa1169010:CDS
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7_4:+61943474 None:intergenic
ATAATGTTTGTGATAGTAGT+GGG 0.561142 7_4:-61943162 Msa1169010:three_prime_UTR
AAGTTTGTCAAAACCTCCTG+TGG 0.563123 7_4:+61945221 None:intergenic
CATGAGCTAATTGTTATAGC+TGG 0.573740 7_4:+61945502 None:intergenic
GGCCGCATCATGGTGGACAC+AGG 0.576015 7_4:+61944826 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7_4:-61944926 Msa1169010:CDS
AAGTGGCCATATAGTTTATG+GGG 0.586784 7_4:+61945474 None:intergenic
TGGAGAAAGAGCAATGACTT+CGG 0.587031 7_4:+61945015 None:intergenic
AGTAGTAGTGCAGCTATGGT+TGG 0.587266 7_4:-61943376 Msa1169010:CDS
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7_4:+61944799 None:intergenic
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7_4:+61944837 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7_4:-61945150 Msa1169010:intron
TGCTCATGAAATCCTGCATG+TGG 0.593771 7_4:+61943724 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7_4:-61944649 Msa1169010:intron
GAAGAGGTCACAACCTACCA+TGG 0.609397 7_4:-61944910 Msa1169010:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7_4:-61943455 Msa1169010:CDS
ATTCATCTCAAACATGCAGT+GGG 0.610037 7_4:+61943138 None:intergenic
GTCTGCGAAATATGCAACAA+AGG 0.612364 7_4:-61944965 Msa1169010:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7_4:+61943580 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7_4:-61944895 Msa1169010:CDS
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7_4:+61944789 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7_4:-61943772 Msa1169010:CDS
GACCTGTGTCCACCATGATG+CGG 0.639865 7_4:-61944828 Msa1169010:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7_4:-61943790 Msa1169010:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7_4:-61944692 Msa1169010:CDS
TAATCACTTATATCCCGCCA+AGG 0.654401 7_4:-61945431 Msa1169010:five_prime_UTR
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7_4:-61944877 Msa1169010:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7_4:-61945159 Msa1169010:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7_4:+61944819 None:intergenic
AAAGACCAAACTTGTCATTG+TGG 0.669911 7_4:-61943702 Msa1169010:CDS
AGAGAATATAAGTGTGACTG+TGG 0.678389 7_4:-61944665 Msa1169010:CDS
AAAGTACCAGGTGAAAACAA+AGG 0.694235 7_4:+61945327 None:intergenic
TGGAAGAGGATAGTGAAAAG+GGG 0.696112 7_4:+61945241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG + chr7_4:61943553-61943572 None:intergenic 0.0%
!! TTTATTTATTAAATATTAAA+AGG + chr7_4:61943553-61943572 None:intergenic 0.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7_4:61944119-61944138 Msa1169010:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7_4:61944562-61944581 Msa1169010:intron 10.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7_4:61944119-61944138 Msa1169010:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7_4:61944562-61944581 Msa1169010:intron 10.0%
!!! GAAATCAACAAAAATTATTT+TGG + chr7_4:61943281-61943300 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7_4:61943527-61943546 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7_4:61943594-61943613 Msa1169010:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7_4:61944062-61944081 Msa1169010:intron 15.0%
!!! GAAATCAACAAAAATTATTT+TGG + chr7_4:61943281-61943300 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7_4:61943527-61943546 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7_4:61943594-61943613 Msa1169010:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7_4:61944062-61944081 Msa1169010:intron 15.0%
!!! TCAACAAAAATTATTTTGGA+GGG + chr7_4:61943277-61943296 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG + chr7_4:61943278-61943297 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG + chr7_4:61943362-61943381 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7_4:61944390-61944409 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7_4:61944407-61944426 Msa1169010:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7_4:61944498-61944517 None:intergenic 20.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7_4:61944617-61944636 None:intergenic 20.0%
!!! ACTATTTTTTTGCCTATATA+TGG - chr7_4:61944629-61944648 Msa1169010:intron 20.0%
!!! TTTTTCTAATGTTATGCAAA+TGG - chr7_4:61945039-61945058 Msa1169010:intron 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7_4:61945455-61945474 Msa1169010:five_prime_UTR 20.0%
!!! TCAACAAAAATTATTTTGGA+GGG + chr7_4:61943277-61943296 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG + chr7_4:61943278-61943297 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG + chr7_4:61943362-61943381 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7_4:61944390-61944409 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7_4:61944407-61944426 Msa1169010:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7_4:61944498-61944517 None:intergenic 20.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7_4:61944617-61944636 None:intergenic 20.0%
!!! ACTATTTTTTTGCCTATATA+TGG - chr7_4:61944629-61944648 Msa1169010:intron 20.0%
!!! TTTTTCTAATGTTATGCAAA+TGG - chr7_4:61945039-61945058 Msa1169010:intron 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7_4:61945455-61945474 Msa1169010:five_prime_UTR 20.0%
! TGTTAAAAGACAAGAAAAAG+TGG + chr7_4:61943202-61943221 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7_4:61943875-61943894 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+CGG - chr7_4:61943883-61943902 Msa1169010:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7_4:61944192-61944211 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7_4:61944201-61944220 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7_4:61944254-61944273 Msa1169010:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7_4:61944489-61944508 None:intergenic 25.0%
!! ATAAAAACTTGTTTCGTTCA+AGG - chr7_4:61944519-61944538 Msa1169010:intron 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7_4:61944635-61944654 Msa1169010:intron 25.0%
! AATACTCCATAACCATATAT+AGG + chr7_4:61944644-61944663 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7_4:61944708-61944727 Msa1169010:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7_4:61944985-61945004 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7_4:61945400-61945419 Msa1169010:five_prime_UTR 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7_4:61945401-61945420 Msa1169010:five_prime_UTR 25.0%
! ATCAATATAGTCAACACTTA+AGG + chr7_4:61945450-61945469 None:intergenic 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7_4:61945494-61945513 Msa1169010:five_prime_UTR 25.0%
!! ATGTTTGAGATGAATGAAAA+AGG - chr7_4:61945526-61945545 Msa1169010:five_prime_UTR 25.0%
! TGTTAAAAGACAAGAAAAAG+TGG + chr7_4:61943202-61943221 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7_4:61943875-61943894 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+CGG - chr7_4:61943883-61943902 Msa1169010:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7_4:61944192-61944211 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7_4:61944201-61944220 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7_4:61944254-61944273 Msa1169010:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7_4:61944489-61944508 None:intergenic 25.0%
!! ATAAAAACTTGTTTCGTTCA+AGG - chr7_4:61944519-61944538 Msa1169010:intron 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7_4:61944635-61944654 Msa1169010:intron 25.0%
! AATACTCCATAACCATATAT+AGG + chr7_4:61944644-61944663 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7_4:61944708-61944727 Msa1169010:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7_4:61944985-61945004 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7_4:61945400-61945419 Msa1169010:five_prime_UTR 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7_4:61945401-61945420 Msa1169010:five_prime_UTR 25.0%
! ATCAATATAGTCAACACTTA+AGG + chr7_4:61945450-61945469 None:intergenic 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7_4:61945494-61945513 Msa1169010:five_prime_UTR 25.0%
!! ATGTTTGAGATGAATGAAAA+AGG - chr7_4:61945526-61945545 Msa1169010:five_prime_UTR 25.0%
AAAGTGGCCATATAGTTTAT+GGG + chr7_4:61943186-61943205 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG + chr7_4:61943187-61943206 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG - chr7_4:61943389-61943408 Msa1169010:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7_4:61943938-61943957 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7_4:61943941-61943960 Msa1169010:intron 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7_4:61944090-61944109 Msa1169010:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7_4:61944211-61944230 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7_4:61944673-61944692 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7_4:61944698-61944717 Msa1169010:CDS 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7_4:61944821-61944840 None:intergenic 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7_4:61945136-61945155 Msa1169010:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7_4:61945145-61945164 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7_4:61945145-61945164 Msa1169010:intron 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7_4:61945149-61945168 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7_4:61945201-61945220 Msa1169010:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7_4:61945210-61945229 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG - chr7_4:61945210-61945229 Msa1169010:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7_4:61945493-61945512 Msa1169010:five_prime_UTR 30.0%
AAAGTGGCCATATAGTTTAT+GGG + chr7_4:61943186-61943205 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG + chr7_4:61943187-61943206 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG - chr7_4:61943389-61943408 Msa1169010:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7_4:61943938-61943957 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7_4:61943941-61943960 Msa1169010:intron 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7_4:61944090-61944109 Msa1169010:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7_4:61944211-61944230 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7_4:61944673-61944692 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7_4:61944698-61944717 Msa1169010:CDS 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7_4:61944821-61944840 None:intergenic 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7_4:61945136-61945155 Msa1169010:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7_4:61945145-61945164 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7_4:61945145-61945164 Msa1169010:intron 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7_4:61945149-61945168 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7_4:61945201-61945220 Msa1169010:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7_4:61945210-61945229 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG - chr7_4:61945210-61945229 Msa1169010:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7_4:61945493-61945512 Msa1169010:five_prime_UTR 30.0%
CATGAGCTAATTGTTATAGC+TGG + chr7_4:61943157-61943176 None:intergenic 35.0%
AAGTGGCCATATAGTTTATG+GGG + chr7_4:61943185-61943204 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG + chr7_4:61943251-61943270 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG - chr7_4:61943249-61943268 Msa1169010:CDS 35.0%
AGGTGAAAACAAAGGCTTAT+TGG + chr7_4:61943324-61943343 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG - chr7_4:61943323-61943342 Msa1169010:CDS 35.0%
! AAAGTACCAGGTGAAAACAA+AGG + chr7_4:61943332-61943351 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG + chr7_4:61943344-61943363 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7_4:61943495-61943514 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7_4:61943497-61943516 Msa1169010:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7_4:61943518-61943537 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7_4:61943615-61943634 Msa1169010:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7_4:61943654-61943673 Msa1169010:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7_4:61943730-61943749 Msa1169010:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7_4:61943788-61943807 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7_4:61943786-61943805 Msa1169010:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7_4:61943799-61943818 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7_4:61943870-61943889 None:intergenic 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7_4:61943964-61943983 Msa1169010:intron 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7_4:61943991-61944010 Msa1169010:intron 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7_4:61944726-61944745 Msa1169010:CDS 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7_4:61944838-61944857 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7_4:61944866-61944885 Msa1169010:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7_4:61944884-61944903 Msa1169010:CDS 35.0%
AAAGACCAAACTTGTCATTG+TGG - chr7_4:61944954-61944973 Msa1169010:CDS 35.0%
TTCAACCACAATGACAAGTT+TGG + chr7_4:61944962-61944981 None:intergenic 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7_4:61945185-61945204 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG + chr7_4:61945216-61945235 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7_4:61945293-61945312 Msa1169010:five_prime_UTR 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7_4:61945310-61945329 Msa1169010:five_prime_UTR 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7_4:61945383-61945402 None:intergenic 35.0%
ATTCATCTCAAACATGCAGT+GGG + chr7_4:61945521-61945540 None:intergenic 35.0%
!! GAAAAAGGTGCTGAATTTCT+CGG - chr7_4:61945541-61945560 Msa1169010:five_prime_UTR 35.0%
CATGAGCTAATTGTTATAGC+TGG + chr7_4:61943157-61943176 None:intergenic 35.0%
AAGTGGCCATATAGTTTATG+GGG + chr7_4:61943185-61943204 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG + chr7_4:61943251-61943270 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG - chr7_4:61943249-61943268 Msa1169010:CDS 35.0%
AGGTGAAAACAAAGGCTTAT+TGG + chr7_4:61943324-61943343 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG - chr7_4:61943323-61943342 Msa1169010:CDS 35.0%
! AAAGTACCAGGTGAAAACAA+AGG + chr7_4:61943332-61943351 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG + chr7_4:61943344-61943363 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7_4:61943495-61943514 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7_4:61943497-61943516 Msa1169010:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7_4:61943518-61943537 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7_4:61943615-61943634 Msa1169010:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7_4:61943654-61943673 Msa1169010:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7_4:61943730-61943749 Msa1169010:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7_4:61943788-61943807 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7_4:61943786-61943805 Msa1169010:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7_4:61943799-61943818 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7_4:61943870-61943889 None:intergenic 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7_4:61943964-61943983 Msa1169010:intron 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7_4:61943991-61944010 Msa1169010:intron 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7_4:61944726-61944745 Msa1169010:CDS 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7_4:61944838-61944857 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7_4:61944866-61944885 Msa1169010:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7_4:61944884-61944903 Msa1169010:CDS 35.0%
AAAGACCAAACTTGTCATTG+TGG - chr7_4:61944954-61944973 Msa1169010:CDS 35.0%
TTCAACCACAATGACAAGTT+TGG + chr7_4:61944962-61944981 None:intergenic 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7_4:61945185-61945204 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG + chr7_4:61945216-61945235 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7_4:61945293-61945312 Msa1169010:five_prime_UTR 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7_4:61945310-61945329 Msa1169010:five_prime_UTR 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7_4:61945383-61945402 None:intergenic 35.0%
ATTCATCTCAAACATGCAGT+GGG + chr7_4:61945521-61945540 None:intergenic 35.0%
GCACAACCCCATAAACTATA+TGG - chr7_4:61943176-61943195 Msa1169010:three_prime_UTR 40.0%
TAATCACTTATATCCCGCCA+AGG - chr7_4:61943225-61943244 Msa1169010:exon 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7_4:61943418-61943437 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7_4:61943419-61943438 None:intergenic 40.0%
TGTGGAAGAGGATAGTGAAA+AGG + chr7_4:61943420-61943439 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+AGG - chr7_4:61943419-61943438 Msa1169010:CDS 40.0%
AAGTTTGTCAAAACCTCCTG+TGG + chr7_4:61943438-61943457 None:intergenic 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7_4:61943472-61943491 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7_4:61943644-61943663 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7_4:61943687-61943706 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7_4:61943691-61943710 Msa1169010:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7_4:61943720-61943739 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7_4:61943762-61943781 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7_4:61943761-61943780 Msa1169010:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7_4:61943779-61943798 Msa1169010:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7_4:61943801-61943820 Msa1169010:CDS 40.0%
GAAAACACGGTGAGAAGAAA+TGG - chr7_4:61943896-61943915 Msa1169010:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7_4:61944730-61944749 Msa1169010:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7_4:61944920-61944939 Msa1169010:CDS 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7_4:61945097-61945116 Msa1169010:intron 40.0%
TAGTAGTAGTAGTGCAGCTA+TGG - chr7_4:61945276-61945295 Msa1169010:exon 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7_4:61945292-61945311 Msa1169010:five_prime_UTR 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7_4:61945345-61945364 None:intergenic 40.0%
CATTCATCTCAAACATGCAG+TGG + chr7_4:61945522-61945541 None:intergenic 40.0%
GCACAACCCCATAAACTATA+TGG - chr7_4:61943176-61943195 Msa1169010:three_prime_UTR 40.0%
TAATCACTTATATCCCGCCA+AGG - chr7_4:61943225-61943244 Msa1169010:exon 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7_4:61943418-61943437 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7_4:61943419-61943438 None:intergenic 40.0%
TGTGGAAGAGGATAGTGAAA+AGG + chr7_4:61943420-61943439 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+AGG - chr7_4:61943419-61943438 Msa1169010:CDS 40.0%
AAGTTTGTCAAAACCTCCTG+TGG + chr7_4:61943438-61943457 None:intergenic 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7_4:61943472-61943491 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7_4:61943644-61943663 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7_4:61943687-61943706 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7_4:61943691-61943710 Msa1169010:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7_4:61943720-61943739 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7_4:61943762-61943781 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7_4:61943761-61943780 Msa1169010:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7_4:61943779-61943798 Msa1169010:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7_4:61943801-61943820 Msa1169010:CDS 40.0%
GAAAACACGGTGAGAAGAAA+TGG - chr7_4:61943896-61943915 Msa1169010:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7_4:61944730-61944749 Msa1169010:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7_4:61944920-61944939 Msa1169010:CDS 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7_4:61945097-61945116 Msa1169010:intron 40.0%
TAGTAGTAGTAGTGCAGCTA+TGG - chr7_4:61945276-61945295 Msa1169010:exon 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7_4:61945292-61945311 Msa1169010:five_prime_UTR 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7_4:61945345-61945364 None:intergenic 40.0%
CATTCATCTCAAACATGCAG+TGG + chr7_4:61945522-61945541 None:intergenic 40.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7_4:61943473-61943492 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7_4:61943478-61943497 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7_4:61943479-61943498 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7_4:61943485-61943504 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7_4:61943488-61943507 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7_4:61943506-61943525 Msa1169010:CDS 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7_4:61943664-61943683 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7_4:61943766-61943785 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7_4:61944007-61944026 Msa1169010:intron 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7_4:61944935-61944954 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7_4:61945079-61945098 None:intergenic 45.0%
GCTGCACTACTACTACTACT+TGG + chr7_4:61945274-61945293 None:intergenic 45.0%
AGTAGTAGTGCAGCTATGGT+TGG - chr7_4:61945280-61945299 Msa1169010:exon 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7_4:61943473-61943492 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7_4:61943478-61943497 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7_4:61943479-61943498 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7_4:61943485-61943504 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7_4:61943488-61943507 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7_4:61943506-61943525 Msa1169010:CDS 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7_4:61943664-61943683 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7_4:61943766-61943785 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7_4:61944007-61944026 Msa1169010:intron 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7_4:61944935-61944954 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7_4:61945079-61945098 None:intergenic 45.0%
GCTGCACTACTACTACTACT+TGG + chr7_4:61945274-61945293 None:intergenic 45.0%
AGTAGTAGTGCAGCTATGGT+TGG - chr7_4:61945280-61945299 Msa1169010:exon 45.0%
!! TAAAAGAGACTGGCCTTGGC+GGG + chr7_4:61943241-61943260 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG + chr7_4:61943242-61943261 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG + chr7_4:61943245-61943264 None:intergenic 50.0%
TCACTATCCTCTTCCACAGG+AGG - chr7_4:61943422-61943441 Msa1169010:CDS 50.0%
GTCAAAACCTCCTGTGGAAG+AGG + chr7_4:61943432-61943451 None:intergenic 50.0%
AGAGCAATGACTTCGGCATC+CGG + chr7_4:61943637-61943656 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7_4:61943746-61943765 Msa1169010:CDS 50.0%
! GCAAGCTTTGCTAGCTCTTG+AGG + chr7_4:61945358-61945377 None:intergenic 50.0%
!! TAAAAGAGACTGGCCTTGGC+GGG + chr7_4:61943241-61943260 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG + chr7_4:61943242-61943261 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG + chr7_4:61943245-61943264 None:intergenic 50.0%
TCACTATCCTCTTCCACAGG+AGG - chr7_4:61943422-61943441 Msa1169010:CDS 50.0%
GTCAAAACCTCCTGTGGAAG+AGG + chr7_4:61943432-61943451 None:intergenic 50.0%
AGAGCAATGACTTCGGCATC+CGG + chr7_4:61943637-61943656 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7_4:61943746-61943765 Msa1169010:CDS 50.0%
! GCAAGCTTTGCTAGCTCTTG+AGG + chr7_4:61945358-61945377 None:intergenic 50.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7_4:61943823-61943842 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG - chr7_4:61943828-61943847 Msa1169010:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7_4:61943860-61943879 None:intergenic 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7_4:61943823-61943842 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG - chr7_4:61943828-61943847 Msa1169010:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7_4:61943860-61943879 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7_4:61943822-61943841 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7_4:61943834-61943853 Msa1169010:CDS 60.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7_4:61943822-61943841 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7_4:61943834-61943853 Msa1169010:CDS 60.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7_4:61943833-61943852 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7_4:61943833-61943852 Msa1169010:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7_4:61943841-61943860 Msa1169010:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7_4:61943853-61943872 Msa1169010:CDS 65.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7_4:61943833-61943852 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7_4:61943833-61943852 Msa1169010:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7_4:61943841-61943860 Msa1169010:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7_4:61943853-61943872 Msa1169010:CDS 65.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7_4:61943840-61943859 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7_4:61943843-61943862 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7_4:61943840-61943859 Msa1169010:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7_4:61943854-61943873 None:intergenic 70.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7_4:61943840-61943859 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7_4:61943843-61943862 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7_4:61943840-61943859 Msa1169010:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7_4:61943854-61943873 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 61943116 61945562 61943116 ID=Msa1169010;Name=Msa1169010
chr7_4 mRNA 61943116 61945562 61943116 ID=Msa1169010-mRNA-1;Parent=Msa1169010;Name=Msa1169010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=282|1|1|1|1|1|3|121|406
chr7_4 exon 61943116 61943930 61943116 ID=Msa1169010-mRNA-1:exon:19544;Parent=Msa1169010-mRNA-1
chr7_4 exon 61944650 61945046 61944650 ID=Msa1169010-mRNA-1:exon:19543;Parent=Msa1169010-mRNA-1
chr7_4 exon 61945151 61945562 61945151 ID=Msa1169010-mRNA-1:exon:19542;Parent=Msa1169010-mRNA-1
chr7_4 five_prime_UTR 61945281 61945562 61945281 ID=Msa1169010-mRNA-1:five_prime_utr;Parent=Msa1169010-mRNA-1
chr7_4 CDS 61945151 61945280 61945151 ID=Msa1169010-mRNA-1:cds;Parent=Msa1169010-mRNA-1
chr7_4 CDS 61944650 61945046 61944650 ID=Msa1169010-mRNA-1:cds;Parent=Msa1169010-mRNA-1
chr7_4 CDS 61943237 61943930 61943237 ID=Msa1169010-mRNA-1:cds;Parent=Msa1169010-mRNA-1
chr7_4 three_prime_UTR 61943116 61943236 61943116 ID=Msa1169010-mRNA-1:three_prime_utr;Parent=Msa1169010-mRNA-1
Gene Sequence

>Msa1169010

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACAGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCGGATGCCGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACACGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCATTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATTCACATTCAATTGATCATGTTTCATCAGATTTTTCTAATGTTATGCAAATGGCTCAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGTACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTAGTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGCTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA
Protein sequence

>Msa1169010

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHSHSIDHVSSDFSNVMQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSSSAAMVGNSSGFRDFLGVSNHQFLPQELAKLASISSSMMSLNQFNAGCINEN*