Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170820 | XP_003616690.1 | 97.006 | 167 | 4 | 1 | 3 | 168 | 1 | 167 | 5.25e-117 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170820 | sp|Q8LBW3|LBD12_ARATH | 77.444 | 133 | 26 | 1 | 5 | 133 | 5 | 137 | 1.71e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1170820 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170820 | MtrunA17_Chr5g0437571 | 97.006 | 167 | 4 | 1 | 3 | 168 | 1 | 167 | 4.83e-121 | 338 |
| Msa1170820 | MtrunA17_Chr3g0114061 | 71.951 | 164 | 37 | 4 | 3 | 162 | 1 | 159 | 3.87e-79 | 232 |
| Msa1170820 | MtrunA17_Chr3g0106101 | 64.773 | 176 | 46 | 5 | 3 | 162 | 1 | 176 | 1.76e-71 | 213 |
| Msa1170820 | MtrunA17_Chr2g0311601 | 74.336 | 113 | 29 | 0 | 1 | 113 | 6 | 118 | 2.75e-59 | 181 |
| Msa1170820 | MtrunA17_Chr4g0043421 | 55.090 | 167 | 64 | 1 | 1 | 167 | 8 | 163 | 1.17e-58 | 180 |
| Msa1170820 | MtrunA17_Chr7g0227511 | 51.678 | 149 | 68 | 1 | 6 | 150 | 9 | 157 | 2.57e-49 | 157 |
| Msa1170820 | MtrunA17_Chr4g0058651 | 51.266 | 158 | 60 | 1 | 6 | 146 | 9 | 166 | 3.95e-49 | 157 |
| Msa1170820 | MtrunA17_Chr3g0117121 | 69.231 | 104 | 32 | 0 | 6 | 109 | 8 | 111 | 6.97e-49 | 156 |
| Msa1170820 | MtrunA17_Chr4g0030001 | 62.281 | 114 | 42 | 1 | 7 | 119 | 23 | 136 | 4.51e-48 | 154 |
| Msa1170820 | MtrunA17_Chr5g0438091 | 58.824 | 119 | 49 | 0 | 3 | 121 | 34 | 152 | 1.95e-47 | 152 |
| Msa1170820 | MtrunA17_Chr6g0449641 | 55.738 | 122 | 54 | 0 | 6 | 127 | 7 | 128 | 3.08e-47 | 150 |
| Msa1170820 | MtrunA17_Chr1g0200201 | 50.955 | 157 | 52 | 4 | 9 | 146 | 73 | 223 | 1.26e-46 | 152 |
| Msa1170820 | MtrunA17_Chr3g0129071 | 67.961 | 103 | 33 | 0 | 7 | 109 | 46 | 148 | 1.98e-46 | 151 |
| Msa1170820 | MtrunA17_Chr6g0449651 | 47.945 | 146 | 65 | 1 | 6 | 151 | 65 | 199 | 1.60e-45 | 148 |
| Msa1170820 | MtrunA17_Chr3g0115431 | 58.974 | 117 | 47 | 1 | 6 | 122 | 7 | 122 | 1.40e-44 | 146 |
| Msa1170820 | MtrunA17_Chr5g0402611 | 57.600 | 125 | 52 | 1 | 6 | 129 | 6 | 130 | 1.02e-43 | 147 |
| Msa1170820 | MtrunA17_Chr3g0097221 | 60.194 | 103 | 41 | 0 | 6 | 108 | 5 | 107 | 1.30e-42 | 143 |
| Msa1170820 | MtrunA17_Chr3g0113891 | 65.000 | 100 | 35 | 0 | 6 | 105 | 12 | 111 | 1.68e-42 | 140 |
| Msa1170820 | MtrunA17_Chr5g0432451 | 66.990 | 103 | 34 | 0 | 7 | 109 | 42 | 144 | 3.96e-42 | 140 |
| Msa1170820 | MtrunA17_Chr5g0437401 | 59.615 | 104 | 42 | 0 | 5 | 108 | 8 | 111 | 1.74e-40 | 134 |
| Msa1170820 | MtrunA17_Chr8g0353981 | 61.682 | 107 | 41 | 0 | 6 | 112 | 5 | 111 | 2.26e-40 | 135 |
| Msa1170820 | MtrunA17_Chr7g0260971 | 55.660 | 106 | 46 | 1 | 4 | 108 | 10 | 115 | 3.08e-38 | 130 |
| Msa1170820 | MtrunA17_Chr8g0351721 | 52.846 | 123 | 54 | 2 | 5 | 123 | 15 | 137 | 7.72e-38 | 129 |
| Msa1170820 | MtrunA17_Chr1g0184281 | 58.416 | 101 | 41 | 1 | 8 | 107 | 15 | 115 | 1.67e-37 | 127 |
| Msa1170820 | MtrunA17_Chr5g0444351 | 50.459 | 109 | 54 | 0 | 9 | 117 | 6 | 114 | 1.71e-37 | 125 |
| Msa1170820 | MtrunA17_Chr8g0351701 | 55.882 | 102 | 44 | 1 | 8 | 108 | 23 | 124 | 5.34e-36 | 124 |
| Msa1170820 | MtrunA17_Chr7g0225111 | 48.649 | 111 | 57 | 0 | 7 | 117 | 4 | 114 | 8.25e-36 | 120 |
| Msa1170820 | MtrunA17_Chr7g0261031 | 47.143 | 140 | 62 | 4 | 4 | 132 | 4 | 142 | 6.58e-35 | 121 |
| Msa1170820 | MtrunA17_Chr7g0245871 | 55.882 | 102 | 44 | 1 | 8 | 108 | 27 | 128 | 1.66e-34 | 121 |
| Msa1170820 | MtrunA17_Chr5g0435641 | 42.177 | 147 | 72 | 3 | 4 | 142 | 3 | 144 | 1.42e-33 | 117 |
| Msa1170820 | MtrunA17_Chr1g0184271 | 55.670 | 97 | 40 | 2 | 8 | 102 | 12 | 107 | 8.34e-33 | 116 |
| Msa1170820 | MtrunA17_Chr6g0460951 | 48.077 | 104 | 53 | 1 | 7 | 109 | 39 | 142 | 9.67e-32 | 113 |
| Msa1170820 | MtrunA17_Chr7g0245861 | 56.989 | 93 | 37 | 2 | 5 | 94 | 9 | 101 | 1.69e-31 | 110 |
| Msa1170820 | MtrunA17_Chr8g0374601 | 47.525 | 101 | 53 | 0 | 8 | 108 | 26 | 126 | 2.24e-29 | 108 |
| Msa1170820 | MtrunA17_Chr8g0374591 | 44.554 | 101 | 56 | 0 | 8 | 108 | 8 | 108 | 1.16e-28 | 102 |
| Msa1170820 | MtrunA17_Chr8g0374581 | 46.602 | 103 | 54 | 1 | 8 | 109 | 8 | 110 | 1.80e-27 | 102 |
| Msa1170820 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 8 | 94 | 7 | 94 | 7.84e-27 | 97.1 |
| Msa1170820 | MtrunA17_Chr6g0452691 | 38.596 | 114 | 69 | 1 | 3 | 115 | 4 | 117 | 1.08e-25 | 97.1 |
| Msa1170820 | MtrunA17_Chr4g0059901 | 44.167 | 120 | 66 | 1 | 2 | 120 | 4 | 123 | 2.34e-25 | 98.2 |
| Msa1170820 | MtrunA17_Chr6g0452671 | 40.860 | 93 | 55 | 0 | 9 | 101 | 12 | 104 | 9.71e-24 | 92.4 |
| Msa1170820 | MtrunA17_Chr6g0452661 | 42.169 | 83 | 47 | 1 | 6 | 87 | 7 | 89 | 9.57e-22 | 88.2 |
| Msa1170820 | MtrunA17_Chr2g0326051 | 58.209 | 67 | 28 | 0 | 53 | 119 | 5 | 71 | 1.97e-21 | 84.3 |
| Msa1170820 | MtrunA17_Chr4g0040831 | 33.600 | 125 | 80 | 1 | 4 | 125 | 11 | 135 | 2.45e-21 | 86.3 |
| Msa1170820 | MtrunA17_Chr2g0330201 | 34.286 | 105 | 69 | 0 | 4 | 108 | 15 | 119 | 1.30e-20 | 86.3 |
| Msa1170820 | MtrunA17_Chr8g0342351 | 31.884 | 138 | 94 | 0 | 9 | 146 | 13 | 150 | 1.72e-20 | 85.1 |
| Msa1170820 | MtrunA17_Chr4g0055441 | 40.426 | 94 | 51 | 2 | 9 | 97 | 3 | 96 | 2.63e-20 | 82.4 |
| Msa1170820 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 7 | 54 | 32 | 79 | 4.54e-19 | 77.0 |
| Msa1170820 | MtrunA17_Chr4g0046201 | 36.782 | 87 | 55 | 0 | 9 | 95 | 7 | 93 | 1.03e-17 | 77.8 |
| Msa1170820 | MtrunA17_Chr5g0439111 | 38.554 | 83 | 50 | 1 | 6 | 87 | 7 | 89 | 3.48e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170820 | AT2G30130.1 | 77.444 | 133 | 26 | 1 | 5 | 133 | 5 | 137 | 1.74e-72 | 216 |
| Msa1170820 | AT1G31320.1 | 68.333 | 120 | 38 | 0 | 1 | 120 | 6 | 125 | 6.77e-52 | 164 |
| Msa1170820 | AT2G28500.1 | 50.314 | 159 | 76 | 2 | 7 | 163 | 54 | 211 | 1.94e-50 | 162 |
| Msa1170820 | AT1G07900.1 | 57.576 | 132 | 55 | 1 | 7 | 138 | 32 | 162 | 6.70e-50 | 159 |
| Msa1170820 | AT1G16530.1 | 68.224 | 107 | 33 | 1 | 7 | 112 | 13 | 119 | 3.60e-49 | 156 |
| Msa1170820 | AT5G63090.4 | 68.932 | 103 | 32 | 0 | 6 | 108 | 9 | 111 | 3.00e-48 | 155 |
| Msa1170820 | AT5G63090.3 | 68.932 | 103 | 32 | 0 | 6 | 108 | 9 | 111 | 3.00e-48 | 155 |
| Msa1170820 | AT5G63090.2 | 68.932 | 103 | 32 | 0 | 6 | 108 | 9 | 111 | 3.00e-48 | 155 |
| Msa1170820 | AT5G63090.1 | 68.932 | 103 | 32 | 0 | 6 | 108 | 9 | 111 | 3.00e-48 | 155 |
| Msa1170820 | AT3G27650.1 | 65.385 | 104 | 36 | 0 | 6 | 109 | 37 | 140 | 1.93e-47 | 152 |
| Msa1170820 | AT2G30340.1 | 58.824 | 119 | 49 | 0 | 7 | 125 | 51 | 169 | 8.49e-46 | 151 |
| Msa1170820 | AT2G30340.2 | 58.824 | 119 | 49 | 0 | 7 | 125 | 52 | 170 | 1.06e-45 | 151 |
| Msa1170820 | AT2G23660.2 | 55.556 | 117 | 51 | 1 | 6 | 122 | 3 | 118 | 2.81e-44 | 148 |
| Msa1170820 | AT2G23660.3 | 55.556 | 117 | 51 | 1 | 6 | 122 | 3 | 118 | 2.81e-44 | 148 |
| Msa1170820 | AT2G23660.1 | 55.556 | 117 | 51 | 1 | 6 | 122 | 3 | 118 | 2.81e-44 | 148 |
| Msa1170820 | AT2G40470.2 | 68.932 | 103 | 32 | 0 | 7 | 109 | 19 | 121 | 7.86e-44 | 144 |
| Msa1170820 | AT2G40470.1 | 68.932 | 103 | 32 | 0 | 7 | 109 | 44 | 146 | 1.07e-43 | 144 |
| Msa1170820 | AT5G66870.1 | 62.136 | 103 | 39 | 0 | 6 | 108 | 5 | 107 | 1.92e-42 | 144 |
| Msa1170820 | AT3G26660.1 | 57.273 | 110 | 47 | 0 | 9 | 118 | 6 | 115 | 5.27e-42 | 137 |
| Msa1170820 | AT3G26620.1 | 57.273 | 110 | 47 | 0 | 9 | 118 | 6 | 115 | 6.08e-42 | 136 |
| Msa1170820 | AT3G11090.1 | 56.897 | 116 | 49 | 1 | 6 | 120 | 9 | 124 | 4.03e-40 | 133 |
| Msa1170820 | AT1G65620.1 | 64.078 | 103 | 37 | 0 | 6 | 108 | 7 | 109 | 8.71e-40 | 134 |
| Msa1170820 | AT1G65620.4 | 64.078 | 103 | 37 | 0 | 6 | 108 | 7 | 109 | 8.71e-40 | 134 |
| Msa1170820 | AT1G65620.3 | 64.078 | 103 | 37 | 0 | 6 | 108 | 7 | 109 | 8.71e-40 | 134 |
| Msa1170820 | AT1G65620.5 | 64.078 | 103 | 37 | 0 | 6 | 108 | 7 | 109 | 8.71e-40 | 134 |
| Msa1170820 | AT1G65620.2 | 64.078 | 103 | 37 | 0 | 6 | 108 | 7 | 109 | 8.71e-40 | 134 |
| Msa1170820 | AT2G42430.1 | 55.660 | 106 | 46 | 1 | 4 | 108 | 11 | 116 | 1.03e-36 | 127 |
| Msa1170820 | AT4G00210.1 | 44.025 | 159 | 72 | 3 | 4 | 161 | 7 | 149 | 4.41e-36 | 125 |
| Msa1170820 | AT3G03760.1 | 53.846 | 104 | 47 | 1 | 7 | 109 | 50 | 153 | 4.94e-36 | 126 |
| Msa1170820 | AT2G45410.1 | 48.837 | 129 | 62 | 2 | 11 | 135 | 19 | 147 | 4.94e-35 | 121 |
| Msa1170820 | AT2G42440.1 | 46.429 | 140 | 65 | 4 | 4 | 141 | 3 | 134 | 8.55e-35 | 122 |
| Msa1170820 | AT2G31310.1 | 44.521 | 146 | 69 | 4 | 3 | 137 | 1 | 145 | 1.12e-34 | 120 |
| Msa1170820 | AT2G45420.1 | 52.885 | 104 | 48 | 1 | 11 | 113 | 40 | 143 | 5.57e-34 | 120 |
| Msa1170820 | AT4G00220.1 | 52.885 | 104 | 48 | 1 | 11 | 113 | 20 | 123 | 2.92e-33 | 118 |
| Msa1170820 | AT3G58190.1 | 47.244 | 127 | 59 | 3 | 8 | 132 | 11 | 131 | 6.32e-33 | 117 |
| Msa1170820 | AT5G06080.1 | 52.727 | 110 | 46 | 2 | 7 | 115 | 6 | 110 | 8.32e-32 | 112 |
| Msa1170820 | AT3G50510.1 | 45.631 | 103 | 56 | 0 | 6 | 108 | 10 | 112 | 8.76e-29 | 105 |
| Msa1170820 | AT3G50510.2 | 45.631 | 103 | 56 | 0 | 6 | 108 | 10 | 112 | 8.76e-29 | 105 |
| Msa1170820 | AT5G35900.1 | 40.777 | 103 | 61 | 0 | 9 | 111 | 6 | 108 | 5.74e-24 | 93.6 |
| Msa1170820 | AT3G47870.1 | 36.449 | 107 | 68 | 0 | 2 | 108 | 30 | 136 | 5.04e-23 | 93.6 |
| Msa1170820 | AT1G72980.1 | 38.261 | 115 | 70 | 1 | 4 | 117 | 9 | 123 | 5.61e-23 | 90.9 |
| Msa1170820 | AT3G13850.1 | 38.947 | 95 | 58 | 0 | 9 | 103 | 37 | 131 | 3.75e-21 | 87.4 |
| Msa1170820 | AT1G06280.1 | 44.595 | 74 | 41 | 0 | 9 | 82 | 25 | 98 | 3.04e-18 | 78.6 |
| Msa1170820 | AT2G19820.1 | 35.955 | 89 | 56 | 1 | 7 | 94 | 11 | 99 | 1.05e-15 | 69.7 |
| Msa1170820 | AT4G22700.1 | 35.644 | 101 | 63 | 2 | 9 | 108 | 6 | 105 | 4.46e-15 | 69.7 |
| Msa1170820 | AT5G15060.1 | 39.726 | 73 | 42 | 1 | 9 | 79 | 18 | 90 | 7.09e-14 | 65.5 |
| Msa1170820 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 3 | 94 | 4 | 95 | 2.44e-12 | 60.8 |
Find 16 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACTCAATACCTTAATTA+TGG | 0.252400 | 8_1:+157757 | Msa1170820:CDS |
| TGTGAACTATGGCAAACTTT+TGG | 0.274301 | 8_1:-156659 | None:intergenic |
| TAGAAGAAGAACCATAATTA+AGG | 0.338211 | 8_1:-157768 | None:intergenic |
| TAATATGTATGGACATGATA+TGG | 0.378652 | 8_1:+157825 | Msa1170820:CDS |
| GCTGCAACACAGCCATAAAC+TGG | 0.381237 | 8_1:-157583 | None:intergenic |
| AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | 8_1:+157571 | Msa1170820:CDS |
| TTCTGATCTTGATTGATTTG+TGG | 0.407823 | 8_1:-157712 | None:intergenic |
| GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | 8_1:-156636 | None:intergenic |
| CAATGTTAGCAAAATGTTGC+AGG | 0.415314 | 8_1:+156698 | Msa1170820:CDS |
| CTTAAGAGAGATAATATGTA+TGG | 0.442326 | 8_1:+157814 | Msa1170820:CDS |
| TCTTGATTGATTTGTGGTGT+TGG | 0.466265 | 8_1:-157706 | None:intergenic |
| AAAGTTTGCCATAGTTCACA+AGG | 0.602163 | 8_1:+156662 | Msa1170820:CDS |
| AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | 8_1:-156628 | None:intergenic |
| ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | 8_1:+157557 | Msa1170820:CDS |
| AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | 8_1:-156579 | None:intergenic |
| TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | 8_1:+157558 | Msa1170820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTTAATG+CGG | - | chr8_1:157331-157350 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTTTTTTTTAATG+CGG | - | chr8_1:157331-157350 | None:intergenic | 10.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr8_1:156889-156908 | Msa1170820:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr8_1:156890-156909 | Msa1170820:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr8_1:156990-157009 | None:intergenic | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | - | chr8_1:157048-157067 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr8_1:157201-157220 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTGTTTGAATC+AGG | + | chr8_1:157489-157508 | Msa1170820:intron | 15.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr8_1:156889-156908 | Msa1170820:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr8_1:156890-156909 | Msa1170820:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr8_1:156990-157009 | None:intergenic | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | - | chr8_1:157048-157067 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr8_1:157201-157220 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTGTTTGAATC+AGG | + | chr8_1:157489-157508 | Msa1170820:intron | 15.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | - | chr8_1:156726-156745 | None:intergenic | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr8_1:156749-156768 | Msa1170820:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr8_1:156750-156769 | Msa1170820:intron | 20.0% |
| !!! | TGTACTTATGTTTTTATTCA+AGG | + | chr8_1:156848-156867 | Msa1170820:intron | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr8_1:157056-157075 | Msa1170820:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr8_1:157243-157262 | Msa1170820:intron | 20.0% |
| !!! | TTTTTTAATGCGGAAAATTA+GGG | - | chr8_1:157321-157340 | None:intergenic | 20.0% |
| !!! | TTTTTTTAATGCGGAAAATT+AGG | - | chr8_1:157322-157341 | None:intergenic | 20.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | - | chr8_1:156726-156745 | None:intergenic | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr8_1:156749-156768 | Msa1170820:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr8_1:156750-156769 | Msa1170820:intron | 20.0% |
| !!! | TGTACTTATGTTTTTATTCA+AGG | + | chr8_1:156848-156867 | Msa1170820:intron | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr8_1:157056-157075 | Msa1170820:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr8_1:157243-157262 | Msa1170820:intron | 20.0% |
| !!! | TTTTTTAATGCGGAAAATTA+GGG | - | chr8_1:157321-157340 | None:intergenic | 20.0% |
| !!! | TTTTTTTAATGCGGAAAATT+AGG | - | chr8_1:157322-157341 | None:intergenic | 20.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr8_1:156980-156999 | None:intergenic | 25.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | - | chr8_1:157133-157152 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTTGCGATGTTA+AGG | + | chr8_1:157145-157164 | Msa1170820:intron | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr8_1:157771-157790 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr8_1:157814-157833 | Msa1170820:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr8_1:157825-157844 | Msa1170820:CDS | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr8_1:156980-156999 | None:intergenic | 25.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | - | chr8_1:157133-157152 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTTGCGATGTTA+AGG | + | chr8_1:157145-157164 | Msa1170820:intron | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr8_1:157771-157790 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr8_1:157814-157833 | Msa1170820:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr8_1:157825-157844 | Msa1170820:CDS | 25.0% |
| ATTATAGTTATGAGGAGTTG+AGG | + | chr8_1:157064-157083 | Msa1170820:intron | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | + | chr8_1:157358-157377 | Msa1170820:intron | 30.0% | |
| AAGAACACAACAATTGATCA+CGG | - | chr8_1:157391-157410 | None:intergenic | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | + | chr8_1:157429-157448 | Msa1170820:intron | 30.0% |
| !! | TTCTGATCTTGATTGATTTG+TGG | - | chr8_1:157715-157734 | None:intergenic | 30.0% |
| CTCACTCAATACCTTAATTA+TGG | + | chr8_1:157757-157776 | Msa1170820:CDS | 30.0% | |
| ATTATAGTTATGAGGAGTTG+AGG | + | chr8_1:157064-157083 | Msa1170820:intron | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | + | chr8_1:157358-157377 | Msa1170820:intron | 30.0% | |
| AAGAACACAACAATTGATCA+CGG | - | chr8_1:157391-157410 | None:intergenic | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | + | chr8_1:157429-157448 | Msa1170820:intron | 30.0% |
| !! | TTCTGATCTTGATTGATTTG+TGG | - | chr8_1:157715-157734 | None:intergenic | 30.0% |
| CTCACTCAATACCTTAATTA+TGG | + | chr8_1:157757-157776 | Msa1170820:CDS | 30.0% | |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr8_1:156631-156650 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr8_1:156639-156658 | None:intergenic | 35.0% | |
| ! | TGAACTATGGCAAACTTTTG+GGG | - | chr8_1:156660-156679 | None:intergenic | 35.0% |
| ! | GTGAACTATGGCAAACTTTT+GGG | - | chr8_1:156661-156680 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | - | chr8_1:156662-156681 | None:intergenic | 35.0% |
| AAAGTTTGCCATAGTTCACA+AGG | + | chr8_1:156662-156681 | Msa1170820:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | - | chr8_1:156673-156692 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | + | chr8_1:156698-156717 | Msa1170820:CDS | 35.0% | |
| TTATTCAAGGTTCACCTTGT+AGG | + | chr8_1:156861-156880 | Msa1170820:intron | 35.0% | |
| CACAAACTATTCAACCTACA+AGG | - | chr8_1:156878-156897 | None:intergenic | 35.0% | |
| !!! | CATCTGCTTTTTGGTGAATT+GGG | - | chr8_1:157519-157538 | None:intergenic | 35.0% |
| !! | TCTTGATTGATTTGTGGTGT+TGG | - | chr8_1:157709-157728 | None:intergenic | 35.0% |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr8_1:156631-156650 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr8_1:156639-156658 | None:intergenic | 35.0% | |
| ! | TGAACTATGGCAAACTTTTG+GGG | - | chr8_1:156660-156679 | None:intergenic | 35.0% |
| ! | GTGAACTATGGCAAACTTTT+GGG | - | chr8_1:156661-156680 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | - | chr8_1:156662-156681 | None:intergenic | 35.0% |
| AAAGTTTGCCATAGTTCACA+AGG | + | chr8_1:156662-156681 | Msa1170820:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | - | chr8_1:156673-156692 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | + | chr8_1:156698-156717 | Msa1170820:CDS | 35.0% | |
| TTATTCAAGGTTCACCTTGT+AGG | + | chr8_1:156861-156880 | Msa1170820:intron | 35.0% | |
| CACAAACTATTCAACCTACA+AGG | - | chr8_1:156878-156897 | None:intergenic | 35.0% | |
| !!! | CATCTGCTTTTTGGTGAATT+GGG | - | chr8_1:157519-157538 | None:intergenic | 35.0% |
| !! | TCTTGATTGATTTGTGGTGT+TGG | - | chr8_1:157709-157728 | None:intergenic | 35.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr8_1:156648-156667 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | + | chr8_1:156669-156688 | Msa1170820:CDS | 40.0% |
| ATAGTTATGAGGAGTTGAGG+AGG | + | chr8_1:157067-157086 | Msa1170820:intron | 40.0% | |
| TTGTGACACAATCACGATTG+AGG | + | chr8_1:157098-157117 | Msa1170820:intron | 40.0% | |
| GTTAAGGATTCCAATACGAG+AGG | + | chr8_1:157161-157180 | Msa1170820:intron | 40.0% | |
| AAATCGTAGTCCTCTCGTAT+TGG | - | chr8_1:157174-157193 | None:intergenic | 40.0% | |
| ! | GGGTTAGAGAGTACAAAACT+TGG | - | chr8_1:157301-157320 | None:intergenic | 40.0% |
| AACACAACAATTGATCACGG+AGG | - | chr8_1:157388-157407 | None:intergenic | 40.0% | |
| !!! | GCATCTGCTTTTTGGTGAAT+TGG | - | chr8_1:157520-157539 | None:intergenic | 40.0% |
| !! | TGTTCACTGCATCTGCTTTT+TGG | - | chr8_1:157528-157547 | None:intergenic | 40.0% |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr8_1:157557-157576 | Msa1170820:CDS | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr8_1:157558-157577 | Msa1170820:CDS | 40.0% | |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr8_1:157684-157703 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr8_1:156648-156667 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | + | chr8_1:156669-156688 | Msa1170820:CDS | 40.0% |
| ATAGTTATGAGGAGTTGAGG+AGG | + | chr8_1:157067-157086 | Msa1170820:intron | 40.0% | |
| TTGTGACACAATCACGATTG+AGG | + | chr8_1:157098-157117 | Msa1170820:intron | 40.0% | |
| GTTAAGGATTCCAATACGAG+AGG | + | chr8_1:157161-157180 | Msa1170820:intron | 40.0% | |
| AAATCGTAGTCCTCTCGTAT+TGG | - | chr8_1:157174-157193 | None:intergenic | 40.0% | |
| ! | GGGTTAGAGAGTACAAAACT+TGG | - | chr8_1:157301-157320 | None:intergenic | 40.0% |
| AACACAACAATTGATCACGG+AGG | - | chr8_1:157388-157407 | None:intergenic | 40.0% | |
| !!! | GCATCTGCTTTTTGGTGAAT+TGG | - | chr8_1:157520-157539 | None:intergenic | 40.0% |
| !! | TGTTCACTGCATCTGCTTTT+TGG | - | chr8_1:157528-157547 | None:intergenic | 40.0% |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr8_1:157557-157576 | Msa1170820:CDS | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr8_1:157558-157577 | Msa1170820:CDS | 40.0% | |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr8_1:157684-157703 | None:intergenic | 40.0% |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr8_1:156582-156601 | None:intergenic | 45.0% | |
| CAACAATTGATCACGGAGGT+GGG | - | chr8_1:157384-157403 | None:intergenic | 45.0% | |
| ACAACAATTGATCACGGAGG+TGG | - | chr8_1:157385-157404 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr8_1:157571-157590 | Msa1170820:CDS | 45.0% | |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr8_1:156582-156601 | None:intergenic | 45.0% | |
| CAACAATTGATCACGGAGGT+GGG | - | chr8_1:157384-157403 | None:intergenic | 45.0% | |
| ACAACAATTGATCACGGAGG+TGG | - | chr8_1:157385-157404 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr8_1:157571-157590 | Msa1170820:CDS | 45.0% | |
| GCTGCAACACAGCCATAAAC+TGG | - | chr8_1:157586-157605 | None:intergenic | 50.0% | |
| GCTGCAACACAGCCATAAAC+TGG | - | chr8_1:157586-157605 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 156558 | 157855 | 156558 | ID=Msa1170820;Name=Msa1170820 |
| chr8_1 | mRNA | 156558 | 157855 | 156558 | ID=Msa1170820-mRNA-1;Parent=Msa1170820;Name=Msa1170820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|168 |
| chr8_1 | exon | 156558 | 156719 | 156558 | ID=Msa1170820-mRNA-1:exon:6;Parent=Msa1170820-mRNA-1 |
| chr8_1 | exon | 157511 | 157855 | 157511 | ID=Msa1170820-mRNA-1:exon:7;Parent=Msa1170820-mRNA-1 |
| chr8_1 | CDS | 156558 | 156719 | 156558 | ID=Msa1170820-mRNA-1:cds;Parent=Msa1170820-mRNA-1 |
| chr8_1 | CDS | 157511 | 157855 | 157511 | ID=Msa1170820-mRNA-1:cds;Parent=Msa1170820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
