AlfalfaGEDB | Msa1170820

M. sativa cultivar zhongmu-4 / Msa1170820

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170820	XP_003616690.1	97.006	167	4	1	3	168	1	167	5.25e-117	338

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170820	sp\|Q8LBW3\|LBD12_ARATH	77.444	133	26	1	5	133	5	137	1.71e-71	216

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1170820	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170820	MtrunA17_Chr5g0437571	97.006	167	4	1	3	168	1	167	4.83e-121	338
Msa1170820	MtrunA17_Chr3g0114061	71.951	164	37	4	3	162	1	159	3.87e-79	232
Msa1170820	MtrunA17_Chr3g0106101	64.773	176	46	5	3	162	1	176	1.76e-71	213
Msa1170820	MtrunA17_Chr2g0311601	74.336	113	29	0	1	113	6	118	2.75e-59	181
Msa1170820	MtrunA17_Chr4g0043421	55.090	167	64	1	1	167	8	163	1.17e-58	180
Msa1170820	MtrunA17_Chr7g0227511	51.678	149	68	1	6	150	9	157	2.57e-49	157
Msa1170820	MtrunA17_Chr4g0058651	51.266	158	60	1	6	146	9	166	3.95e-49	157
Msa1170820	MtrunA17_Chr3g0117121	69.231	104	32	0	6	109	8	111	6.97e-49	156
Msa1170820	MtrunA17_Chr4g0030001	62.281	114	42	1	7	119	23	136	4.51e-48	154
Msa1170820	MtrunA17_Chr5g0438091	58.824	119	49	0	3	121	34	152	1.95e-47	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170820	AT2G30130.1	77.444	133	26	1	5	133	5	137	1.74e-72	216
Msa1170820	AT1G31320.1	68.333	120	38	0	1	120	6	125	6.77e-52	164
Msa1170820	AT2G28500.1	50.314	159	76	2	7	163	54	211	1.94e-50	162
Msa1170820	AT1G07900.1	57.576	132	55	1	7	138	32	162	6.70e-50	159
Msa1170820	AT1G16530.1	68.224	107	33	1	7	112	13	119	3.60e-49	156
Msa1170820	AT5G63090.4	68.932	103	32	0	6	108	9	111	3.00e-48	155
Msa1170820	AT5G63090.3	68.932	103	32	0	6	108	9	111	3.00e-48	155
Msa1170820	AT5G63090.2	68.932	103	32	0	6	108	9	111	3.00e-48	155
Msa1170820	AT5G63090.1	68.932	103	32	0	6	108	9	111	3.00e-48	155
Msa1170820	AT3G27650.1	65.385	104	36	0	6	109	37	140	1.93e-47	152

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Find 16 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTGCCATAGTTCACA+AGG	0.602163	8_1:+156662	Msa1170820:CDS
AGAAGCTTGCATGAAGCACA+TGG	0.628381	8_1:-156579	None:intergenic
AGAAGGAAAATAAGGAGCAA+AGG	0.607624	8_1:-156628	None:intergenic
AGAGTGAGGGATCCAGTTTA+TGG	0.403662	8_1:+157571	Msa1170820:CDS
ATGAAGCAAATGCAAGAGTG+AGG	0.619290	8_1:+157557	Msa1170820:CDS
CAATGTTAGCAAAATGTTGC+AGG	0.415314	8_1:+156698	Msa1170820:CDS
CTCACTCAATACCTTAATTA+TGG	0.252400	8_1:+157757	Msa1170820:CDS
CTTAAGAGAGATAATATGTA+TGG	0.442326	8_1:+157814	Msa1170820:CDS
GCTGCAACACAGCCATAAAC+TGG	0.381237	8_1:-157583	None:intergenic
GGTTCATGAGAAGGAAAATA+AGG	0.413213	8_1:-156636	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATAGTTATGAGGAGTTG+AGG	+	chr8_1:157064-157083	Msa1170820:intron	30.0%
CTCTATTGTTGAAGACATAT+TGG	+	chr8_1:157358-157377	Msa1170820:intron	30.0%
AAGAACACAACAATTGATCA+CGG	-	chr8_1:157391-157410	None:intergenic	30.0%
CTCACTCAATACCTTAATTA+TGG	+	chr8_1:157757-157776	Msa1170820:CDS	30.0%
ATTATAGTTATGAGGAGTTG+AGG	+	chr8_1:157064-157083	Msa1170820:intron	30.0%
CTCTATTGTTGAAGACATAT+TGG	+	chr8_1:157358-157377	Msa1170820:intron	30.0%
AAGAACACAACAATTGATCA+CGG	-	chr8_1:157391-157410	None:intergenic	30.0%
CTCACTCAATACCTTAATTA+TGG	+	chr8_1:157757-157776	Msa1170820:CDS	30.0%
AGAAGGAAAATAAGGAGCAA+AGG	-	chr8_1:156631-156650	None:intergenic	35.0%
GGTTCATGAGAAGGAAAATA+AGG	-	chr8_1:156639-156658	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	156558	157855	156558	ID=Msa1170820;Name=Msa1170820
chr8_1	mRNA	156558	157855	156558	ID=Msa1170820-mRNA-1;Parent=Msa1170820;Name=Msa1170820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|168
chr8_1	exon	156558	156719	156558	ID=Msa1170820-mRNA-1:exon:6;Parent=Msa1170820-mRNA-1
chr8_1	exon	157511	157855	157511	ID=Msa1170820-mRNA-1:exon:7;Parent=Msa1170820-mRNA-1
chr8_1	CDS	156558	156719	156558	ID=Msa1170820-mRNA-1:cds;Parent=Msa1170820-mRNA-1
chr8_1	CDS	157511	157855	157511	ID=Msa1170820-mRNA-1:cds;Parent=Msa1170820-mRNA-1

Gene Sequence

>Msa1170820

AAAAAAATGGGTGGAAATTCACCATGTGCTTCATGCAAGCTTCTGAGACGAAGATGCACAAAAGATTGCACCTTTGCTCCTTATTTTCCTTCTCATGAACCCCAAAAGTTTGCCATAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAGCTCCCAATTCACCAAAAAGCAGATGCAGTGAACAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGGGATCCAGTTTATGGCTGTGTTGCAGCAATATCTTACTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTATGCATCCAGATGCAAAATGAGCAAGTGATTCCAACACCACAAATCAATCAAGATCAGAAATCTTACTATATTCAAGATGAACTCACTCAATACCTTAATTATGGTTCTTCTTCTAGTAATAATGTTATTCATGATTCTCTTAAGAGAGATAATATGTATGGACATGATATGGTTTCTTGA

Protein sequence

>Msa1170820

KKMGGNSPCASCKLLRRRCTKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPIHQKADAVNSLVYEANARVRDPVYGCVAAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTPQINQDQKSYYIQDELTQYLNYGSSSSNNVIHDSLKRDNMYGHDMVS*