AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170930 MtrunA17_Chr1g0147881 99.000 100 1 0 1 100 241 340 8.42e-71 214
Msa1170930 MtrunA17_Chr4g0053281 72.000 100 22 1 1 100 245 338 6.64e-49 157
Msa1170930 MtrunA17_Chr4g0071521 86.076 79 11 0 1 79 224 302 7.76e-48 154
Msa1170930 MtrunA17_Chr5g0401821 67.000 100 27 1 1 100 178 271 1.80e-46 149
Msa1170930 MtrunA17_Chr1g0184691 81.013 79 15 0 1 79 272 350 6.00e-46 150
Msa1170930 MtrunA17_Chr3g0139021 70.455 88 25 1 1 88 293 379 2.12e-40 137
Msa1170930 MtrunA17_Chr7g0228941 65.823 79 27 0 1 79 31 109 4.92e-37 121
Msa1170930 MtrunA17_Chr2g0284321 57.692 78 32 1 5 81 17 94 3.06e-29 104
Msa1170930 MtrunA17_Chr2g0293481 54.762 84 33 1 1 79 241 324 5.72e-28 105
Msa1170930 MtrunA17_Chr7g0248691 60.759 79 26 2 1 79 138 211 6.13e-28 103
Msa1170930 MtrunA17_Chr8g0379461 54.878 82 30 1 5 79 52 133 6.40e-28 101
Msa1170930 MtrunA17_Chr7g0270051 58.667 75 29 1 7 79 36 110 2.11e-27 100
Msa1170930 MtrunA17_Chr2g0319961 61.429 70 27 0 21 90 79 148 4.87e-27 99.8
Msa1170930 MtrunA17_Chr8g0348311 68.333 60 19 0 20 79 153 212 5.55e-26 98.2
Msa1170930 MtrunA17_Chr5g0418191 57.317 82 31 2 6 84 301 381 5.77e-24 94.0
Msa1170930 MtrunA17_Chr5g0418191 50.725 69 31 3 14 81 142 208 1.55e-14 67.4
Msa1170930 MtrunA17_Chr4g0042831 54.878 82 33 2 6 84 259 339 1.94e-23 92.0
Msa1170930 MtrunA17_Chr4g0042831 50.877 57 27 1 23 79 146 201 7.71e-12 59.7
Msa1170930 MtrunA17_Chr2g0289181 55.263 76 31 1 19 94 11 83 2.00e-23 89.7
Msa1170930 MtrunA17_Chr5g0445311 52.381 84 36 2 4 84 343 425 3.17e-23 92.4
Msa1170930 MtrunA17_Chr5g0445311 50.877 57 26 2 23 79 201 255 1.32e-11 59.3
Msa1170930 MtrunA17_Chr3g0106491 54.878 82 36 1 2 83 345 425 9.63e-23 90.9
Msa1170930 MtrunA17_Chr3g0106491 50.000 68 32 2 23 90 199 264 1.02e-13 65.1
Msa1170930 MtrunA17_Chr7g0218081 53.012 83 35 2 5 84 390 471 2.02e-22 90.1
Msa1170930 MtrunA17_Chr7g0218081 53.731 67 28 3 14 79 219 283 5.67e-15 68.9
Msa1170930 MtrunA17_Chr3g0101131 47.872 94 44 3 4 94 394 485 2.04e-22 90.1
Msa1170930 MtrunA17_Chr5g0432161 54.762 84 34 2 4 84 400 482 2.26e-22 89.7
Msa1170930 MtrunA17_Chr5g0432161 54.386 57 24 2 23 79 245 299 5.35e-13 63.2
Msa1170930 MtrunA17_Chr1g0202461 50.000 80 39 1 1 79 239 318 3.01e-22 89.0
Msa1170930 MtrunA17_Chr8g0387501 61.404 57 22 0 23 79 130 186 7.30e-22 86.3
Msa1170930 MtrunA17_Chr7g0270191 48.649 74 37 1 6 79 129 201 8.17e-22 86.7
Msa1170930 MtrunA17_Chr3g0079691 52.439 82 38 1 3 84 476 556 9.12e-22 88.2
Msa1170930 MtrunA17_Chr3g0079691 54.386 57 24 2 23 79 281 335 1.47e-13 64.7
Msa1170930 MtrunA17_Chr4g0004911 53.165 79 33 2 6 81 317 394 9.54e-22 88.2
Msa1170930 MtrunA17_Chr4g0004911 50.877 57 27 1 23 79 185 240 3.17e-13 63.9
Msa1170930 MtrunA17_Chr4g0051881 45.238 84 45 1 9 92 165 247 1.15e-21 86.7
Msa1170930 MtrunA17_Chr7g0249301 49.398 83 38 2 5 84 272 353 2.25e-21 86.3
Msa1170930 MtrunA17_Chr7g0249301 53.448 58 25 2 23 80 63 118 2.61e-13 63.9
Msa1170930 MtrunA17_Chr2g0322391 47.561 82 43 0 6 87 333 414 2.42e-21 87.0
Msa1170930 MtrunA17_Chr7g0249311 48.421 95 46 2 3 95 373 466 3.10e-21 86.7
Msa1170930 MtrunA17_Chr7g0249311 50.000 68 29 3 12 79 172 234 3.46e-13 63.9
Msa1170930 MtrunA17_Chr7g0263531 51.471 68 32 1 14 81 353 419 5.14e-21 85.9
Msa1170930 MtrunA17_Chr7g0263531 47.619 84 41 3 14 96 180 261 2.66e-17 75.5
Msa1170930 MtrunA17_Chr7g0243891 52.439 82 35 2 6 84 355 435 1.42e-20 84.7
Msa1170930 MtrunA17_Chr7g0243891 54.386 57 24 2 23 79 217 271 3.48e-12 60.8
Msa1170930 MtrunA17_Chr5g0443131 44.444 81 44 1 9 89 144 223 3.78e-20 82.4
Msa1170930 MtrunA17_Chr4g0001361 53.846 65 30 0 15 79 155 219 4.20e-20 82.4
Msa1170930 MtrunA17_Chr2g0294231 43.023 86 48 1 5 90 186 270 8.10e-20 82.0
Msa1170930 MtrunA17_Chr3g0136961 48.611 72 37 0 8 79 124 195 9.26e-20 81.3
Msa1170930 MtrunA17_Chr4g0075201 46.835 79 42 0 6 84 251 329 1.37e-19 82.0
Msa1170930 MtrunA17_Chr2g0333851 50.000 66 33 0 14 79 161 226 1.43e-19 80.9
Msa1170930 MtrunA17_Chr4g0025061 53.731 67 31 0 23 89 361 427 1.43e-19 82.0
Msa1170930 MtrunA17_Chr1g0150281 52.632 57 27 0 23 79 141 197 1.67e-19 80.5
Msa1170930 MtrunA17_Chr2g0288871 47.368 76 40 0 6 81 289 364 1.83e-19 81.6
Msa1170930 MtrunA17_Chr1g0150801 50.704 71 34 1 9 79 89 158 2.34e-19 77.4
Msa1170930 MtrunA17_Chr3g0099641 41.176 85 50 0 6 90 235 319 2.34e-19 81.3
Msa1170930 MtrunA17_Chr7g0270831 46.835 79 42 0 6 84 200 278 2.59e-19 80.9
Msa1170930 MtrunA17_Chr4g0051181 39.000 100 42 1 1 81 203 302 4.53e-19 80.5
Msa1170930 MtrunA17_Chr7g0216891 47.561 82 35 2 3 82 204 279 7.66e-19 79.7
Msa1170930 MtrunA17_Chr7g0238921 50.667 75 33 2 5 79 110 180 1.18e-18 78.6
Msa1170930 MtrunA17_Chr3g0129361 44.186 86 44 2 8 90 127 211 1.24e-18 77.0
Msa1170930 MtrunA17_Chr1g0194481 45.333 75 40 1 5 79 141 214 1.43e-18 78.2
Msa1170930 MtrunA17_Chr5g0418781 47.297 74 38 1 6 79 108 180 1.67e-18 77.4
Msa1170930 MtrunA17_Chr4g0074001 57.895 57 23 1 23 79 360 415 1.89e-18 78.6
Msa1170930 MtrunA17_Chr8g0335811 45.783 83 41 2 1 80 130 211 1.96e-18 76.6
Msa1170930 MtrunA17_Chr8g0383351 42.529 87 45 2 8 90 142 227 3.83e-18 75.9
Msa1170930 MtrunA17_Chr8g0383251 53.968 63 28 1 19 81 105 166 4.84e-18 74.7
Msa1170930 MtrunA17_Chr4g0068541 39.773 88 52 1 6 93 192 278 6.80e-18 77.0
Msa1170930 MtrunA17_Chr7g0248721 43.678 87 44 3 3 86 119 203 8.16e-18 74.7
Msa1170930 MtrunA17_Chr7g0224801 49.231 65 32 1 18 82 89 152 1.87e-17 72.8
Msa1170930 MtrunA17_Chr5g0447701 56.140 57 24 1 23 79 253 308 1.92e-17 75.5
Msa1170930 MtrunA17_Chr1g0188941 44.578 83 45 1 3 85 32 113 2.01e-17 71.2
Msa1170930 MtrunA17_Chr2g0302391 48.529 68 35 0 23 90 212 279 2.67e-17 75.5
Msa1170930 MtrunA17_Chr4g0060271 52.542 59 28 0 23 81 256 314 2.68e-17 75.5
Msa1170930 MtrunA17_Chr3g0126391 51.351 74 27 2 23 94 134 200 5.94e-17 73.9
Msa1170930 MtrunA17_Chr3g0129321 45.570 79 42 1 1 79 97 174 8.23e-17 72.0
Msa1170930 MtrunA17_Chr1g0150271 46.774 62 33 0 20 81 99 160 1.08e-16 72.4
Msa1170930 MtrunA17_Chr4g0025051 50.746 67 33 0 23 89 336 402 1.10e-16 73.6
Msa1170930 MtrunA17_Chr7g0275531 55.000 60 25 1 23 80 119 178 1.15e-16 73.2
Msa1170930 MtrunA17_Chr5g0402931 60.345 58 20 2 22 79 123 177 1.68e-16 70.5
Msa1170930 MtrunA17_Chr1g0189391 58.065 62 24 2 19 79 94 154 1.21e-15 70.5
Msa1170930 MtrunA17_Chr6g0485431 49.254 67 32 2 23 88 155 220 1.78e-15 70.1
Msa1170930 MtrunA17_Chr8g0386241 39.706 68 40 1 19 86 100 166 1.01e-14 65.9
Msa1170930 MtrunA17_Chr8g0347251 46.667 60 30 1 23 80 137 196 3.77e-14 66.2
Msa1170930 MtrunA17_Chr8g0387981 49.123 57 27 1 23 77 133 189 1.88e-13 64.3
Msa1170930 MtrunA17_Chr4g0024391 42.169 83 46 1 5 87 214 294 7.76e-13 62.8
Msa1170930 MtrunA17_Chr5g0428351 42.857 77 39 2 3 77 167 240 2.11e-12 61.2
Msa1170930 MtrunA17_Chr2g0315381 37.975 79 47 1 1 77 123 201 2.55e-12 60.8
Msa1170930 MtrunA17_Chr5g0431811 43.750 64 33 2 17 77 666 729 4.14e-12 60.8
Msa1170930 MtrunA17_Chr2g0315361 37.333 75 45 1 5 77 131 205 1.52e-11 58.9
Msa1170930 MtrunA17_Chr3g0128671 41.333 75 39 2 5 77 113 184 3.17e-11 57.8
Msa1170930 MtrunA17_Chr7g0244981 45.614 57 29 1 23 77 123 179 4.29e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170930 AT4G31550.2 84.158 101 13 2 1 99 224 323 8.21e-57 178
Msa1170930 AT4G31550.1 84.158 101 13 2 1 99 225 324 8.34e-57 178
Msa1170930 AT2G24570.1 80.000 100 18 2 1 99 222 320 6.60e-53 168
Msa1170930 AT4G24240.1 80.247 81 16 0 1 81 260 340 1.67e-45 150
Msa1170930 AT2G30590.1 81.013 79 15 0 1 79 292 370 1.90e-45 150
Msa1170930 AT3G04670.1 81.250 80 15 0 1 80 241 320 3.50e-45 148
Msa1170930 AT2G23320.1 75.309 81 20 0 1 81 219 299 1.07e-44 147
Msa1170930 AT5G28650.1 80.000 80 16 0 1 80 241 320 6.91e-43 142
Msa1170930 AT1G29280.1 71.186 59 17 0 21 79 73 131 1.51e-29 106
Msa1170930 AT2G34830.1 54.762 84 33 2 1 79 189 272 8.63e-28 104
Msa1170930 AT2G34830.2 54.762 84 33 2 1 79 198 281 6.06e-27 102
Msa1170930 AT1G30650.1 53.571 84 34 2 1 79 191 274 9.82e-27 102
Msa1170930 AT4G01250.1 71.930 57 16 0 23 79 129 185 8.18e-26 97.4
Msa1170930 AT3G58710.2 50.000 96 42 2 1 90 43 138 1.41e-25 96.3
Msa1170930 AT3G58710.1 50.000 96 42 2 1 90 44 139 1.47e-25 96.3
Msa1170930 AT2G38470.1 57.317 82 31 2 6 84 343 423 3.85e-24 95.1
Msa1170930 AT2G38470.1 54.386 57 24 2 23 79 185 239 3.84e-13 63.9
Msa1170930 AT5G52830.1 55.696 79 31 1 1 79 148 222 5.28e-24 93.6
Msa1170930 AT5G45050.4 51.282 78 34 1 2 79 1025 1098 3.39e-23 92.8
Msa1170930 AT5G45050.1 51.282 78 34 1 2 79 1164 1237 3.71e-23 92.4
Msa1170930 AT5G45050.2 51.282 78 34 1 2 79 1136 1209 3.86e-23 92.4
Msa1170930 AT2G04880.2 61.905 63 23 1 19 81 280 341 1.53e-22 90.5
Msa1170930 AT5G07100.2 57.534 73 30 1 9 81 128 199 1.58e-22 87.4
Msa1170930 AT5G07100.2 46.970 66 31 2 14 79 19 80 2.99e-12 60.5
Msa1170930 AT5G07100.4 57.534 73 30 1 9 81 128 199 1.58e-22 87.4
Msa1170930 AT5G07100.4 46.970 66 31 2 14 79 19 80 2.99e-12 60.5
Msa1170930 AT5G07100.5 57.534 73 30 1 9 81 128 199 1.58e-22 87.4
Msa1170930 AT5G07100.5 46.970 66 31 2 14 79 19 80 2.99e-12 60.5
Msa1170930 AT5G07100.3 57.534 73 30 1 9 81 128 199 1.58e-22 87.4
Msa1170930 AT5G07100.3 46.970 66 31 2 14 79 19 80 2.99e-12 60.5
Msa1170930 AT2G04880.1 61.905 63 23 1 19 81 304 365 1.64e-22 90.5
Msa1170930 AT4G23550.1 50.000 80 36 1 2 81 124 199 1.89e-22 89.0
Msa1170930 AT1G13960.2 55.696 79 31 2 6 81 237 314 2.70e-22 89.0
Msa1170930 AT1G13960.2 54.839 62 25 3 19 79 72 131 4.58e-15 69.3
Msa1170930 AT2G03340.1 54.878 82 33 2 6 84 396 476 4.23e-22 89.4
Msa1170930 AT2G03340.1 50.746 67 30 3 16 81 243 307 2.43e-15 70.1
Msa1170930 AT4G26640.5 55.263 76 33 1 6 81 189 263 5.30e-22 88.6
Msa1170930 AT4G26640.5 43.662 71 38 2 23 93 36 104 2.55e-11 58.9
Msa1170930 AT4G26640.6 55.263 76 33 1 6 81 189 263 5.30e-22 88.6
Msa1170930 AT4G26640.6 43.662 71 38 2 23 93 36 104 2.55e-11 58.9
Msa1170930 AT4G26640.4 55.263 76 33 1 6 81 189 263 5.30e-22 88.6
Msa1170930 AT4G26640.4 43.662 71 38 2 23 93 36 104 2.55e-11 58.9
Msa1170930 AT4G26640.3 55.263 76 33 1 6 81 189 263 5.30e-22 88.6
Msa1170930 AT4G26640.3 43.662 71 38 2 23 93 36 104 2.55e-11 58.9
Msa1170930 AT1G13960.1 55.696 79 31 2 6 81 390 467 5.53e-22 89.0
Msa1170930 AT1G13960.1 54.839 62 25 3 19 79 225 284 4.95e-15 69.3
Msa1170930 AT5G26170.1 51.389 72 34 1 9 80 100 170 8.24e-22 84.3
Msa1170930 AT4G26640.1 55.263 76 33 1 6 81 293 367 9.36e-22 88.6
Msa1170930 AT4G26640.1 43.662 71 38 2 23 93 140 208 2.25e-11 58.9
Msa1170930 AT1G29860.1 48.148 81 41 1 6 86 120 199 9.42e-22 86.7
Msa1170930 AT5G07100.1 57.534 73 30 1 9 81 221 292 9.87e-22 87.0
Msa1170930 AT5G07100.1 39.506 81 45 2 14 94 112 188 4.32e-12 60.8
Msa1170930 AT4G26640.2 55.263 76 33 1 6 81 365 439 1.04e-21 88.6
Msa1170930 AT4G26640.2 43.662 71 38 2 23 93 212 280 2.12e-11 58.9
Msa1170930 AT5G49520.1 51.351 74 35 1 6 79 205 277 1.04e-21 87.8
Msa1170930 AT4G26640.7 55.263 76 33 1 6 81 325 399 1.17e-21 88.2
Msa1170930 AT4G26640.7 43.662 71 38 2 23 93 172 240 2.10e-11 58.9
Msa1170930 AT5G56270.1 53.659 82 37 1 3 84 468 548 1.20e-21 88.2
Msa1170930 AT5G56270.1 52.632 57 25 2 23 79 274 328 6.50e-12 60.5
Msa1170930 AT4G31550.3 90.476 42 4 0 1 42 224 265 1.48e-21 85.9
Msa1170930 AT4G18170.1 50.649 77 37 1 5 81 155 230 6.85e-21 84.7
Msa1170930 AT4G26440.1 51.220 82 39 1 3 84 353 433 7.64e-21 85.9
Msa1170930 AT4G26440.1 53.448 58 25 2 23 80 179 234 1.03e-12 62.8
Msa1170930 AT4G31800.2 46.575 73 39 0 7 79 96 168 1.00e-20 83.2
Msa1170930 AT3G04670.2 80.435 46 9 0 1 46 241 286 2.87e-20 82.8
Msa1170930 AT2G40740.1 48.684 76 36 2 5 77 155 230 5.55e-20 82.0
Msa1170930 AT3G01080.2 53.165 79 33 2 6 81 325 402 5.81e-20 83.2
Msa1170930 AT3G01080.2 56.452 62 24 3 19 79 201 260 1.17e-15 71.2
Msa1170930 AT2G40740.3 48.684 76 36 2 5 77 164 239 5.93e-20 82.0
Msa1170930 AT3G01080.1 53.165 79 33 2 6 81 287 364 5.99e-20 83.2
Msa1170930 AT3G01080.1 56.452 62 24 3 19 79 163 222 1.33e-15 70.9
Msa1170930 AT4G04450.1 47.059 85 45 0 6 90 276 360 6.08e-20 83.2
Msa1170930 AT4G04450.2 47.059 85 45 0 6 90 182 266 6.67e-20 83.2
Msa1170930 AT4G31800.1 42.857 84 48 0 7 90 161 244 8.30e-20 81.6
Msa1170930 AT4G39410.1 46.988 83 40 2 1 80 199 280 1.24e-19 81.3
Msa1170930 AT1G69310.4 46.341 82 40 2 1 79 123 203 1.43e-19 80.9
Msa1170930 AT1G69310.2 46.341 82 40 2 1 79 123 203 1.43e-19 80.9
Msa1170930 AT1G69310.1 46.341 82 40 2 1 79 123 203 1.43e-19 80.9
Msa1170930 AT2G37260.2 54.688 64 28 1 18 81 263 325 1.86e-19 81.3
Msa1170930 AT2G37260.2 53.448 58 25 2 23 80 84 139 2.25e-13 64.3
Msa1170930 AT5G46350.1 50.685 73 35 1 9 81 170 241 1.94e-19 80.9
Msa1170930 AT2G37260.3 54.688 64 28 1 18 81 265 327 1.95e-19 81.3
Msa1170930 AT2G37260.3 53.448 58 25 2 23 80 86 141 2.33e-13 64.3
Msa1170930 AT5G45260.1 46.914 81 35 2 1 79 1193 1267 2.45e-19 81.6
Msa1170930 AT2G37260.1 54.688 64 28 1 18 81 345 407 2.55e-19 81.3
Msa1170930 AT2G37260.1 53.448 58 25 2 23 80 166 221 1.85e-13 64.7
Msa1170930 AT1G68150.1 46.914 81 40 1 23 100 236 316 3.73e-19 80.5
Msa1170930 AT1G62300.1 47.368 76 40 0 6 81 296 371 4.37e-19 80.9
Msa1170930 AT2G47260.1 46.667 75 39 1 5 79 157 230 5.17e-19 80.1
Msa1170930 AT4G22070.4 47.368 76 40 0 6 81 281 356 5.76e-19 80.5
Msa1170930 AT4G22070.3 47.368 76 40 0 6 81 281 356 5.76e-19 80.5
Msa1170930 AT4G22070.2 47.368 76 40 0 6 81 281 356 5.76e-19 80.5
Msa1170930 AT4G22070.1 47.368 76 40 0 6 81 281 356 5.76e-19 80.5
Msa1170930 AT5G15130.1 45.556 90 48 1 1 90 207 295 9.50e-19 80.1
Msa1170930 AT4G24240.2 80.952 42 8 0 1 42 260 301 9.64e-19 79.0
Msa1170930 AT5G15130.2 45.556 90 48 1 1 90 165 253 1.34e-18 79.3
Msa1170930 AT3G62340.1 57.895 57 23 1 23 79 119 174 1.89e-18 77.8
Msa1170930 AT2G44745.1 47.619 84 38 3 1 79 119 201 2.76e-18 76.3
Msa1170930 AT5G41570.1 39.394 99 56 2 5 100 78 175 3.98e-18 75.1
Msa1170930 AT2G46130.1 40.206 97 54 2 6 99 11 106 4.02e-18 73.2
Msa1170930 AT2G25000.2 44.595 74 41 0 7 80 88 161 4.76e-18 75.9
Msa1170930 AT2G25000.4 44.595 74 41 0 7 80 88 161 4.76e-18 75.9
Msa1170930 AT4G30935.1 52.542 59 27 1 23 81 332 389 4.77e-18 77.8
Msa1170930 AT4G01720.1 47.368 76 40 0 6 81 223 298 4.93e-18 77.8
Msa1170930 AT1G64000.1 38.235 102 59 2 1 99 90 190 5.22e-18 75.1
Msa1170930 AT1G80840.1 41.333 75 44 0 14 88 138 212 6.02e-18 76.6
Msa1170930 AT2G25000.3 44.595 74 41 0 7 80 110 183 9.15e-18 75.5
Msa1170930 AT5G13080.1 46.053 76 39 2 18 93 63 136 1.09e-17 73.2
Msa1170930 AT2G25000.1 44.595 74 41 0 7 80 131 204 1.14e-17 75.5
Msa1170930 AT1G55600.1 44.156 77 42 1 3 79 288 363 1.82e-17 76.3
Msa1170930 AT1G18860.1 46.914 81 42 1 1 81 219 298 1.97e-17 76.3
Msa1170930 AT2G21900.1 54.386 57 25 1 23 79 110 165 3.19e-17 73.2
Msa1170930 AT2G23320.2 71.429 42 12 0 1 42 219 260 5.67e-17 73.6
Msa1170930 AT2G30250.1 43.529 85 44 2 4 85 307 390 6.38e-17 74.7
Msa1170930 AT3G01970.1 48.438 64 32 1 18 81 61 123 1.50e-16 70.1
Msa1170930 AT5G43290.1 52.055 73 31 2 7 79 102 170 3.68e-16 71.6
Msa1170930 AT5G64810.1 45.070 71 38 1 9 79 97 166 4.28e-16 70.1
Msa1170930 AT3G01080.3 57.895 57 22 2 23 79 206 260 8.86e-16 70.9
Msa1170930 AT1G69310.3 43.902 82 38 3 1 79 123 199 3.46e-15 68.9
Msa1170930 AT1G69810.2 39.326 89 45 2 4 91 135 215 2.06e-14 67.4
Msa1170930 AT1G69810.1 44.286 70 38 1 23 91 204 273 3.88e-14 66.6
Msa1170930 AT2G46130.2 37.113 97 53 2 6 99 11 102 1.00e-13 62.0
Msa1170930 AT5G24110.1 47.368 57 28 1 23 77 114 170 1.89e-13 64.3
Msa1170930 AT4G11070.1 50.877 57 26 1 23 77 142 198 1.99e-13 64.3
Msa1170930 AT4G11070.2 50.877 57 26 1 23 77 110 166 2.19e-13 64.3
Msa1170930 AT1G66560.1 49.153 59 28 1 21 77 102 160 4.74e-13 62.8
Msa1170930 AT4G12020.5 50.877 57 26 2 23 79 402 456 6.90e-13 63.5
Msa1170930 AT4G12020.6 50.877 57 26 2 23 79 469 523 7.75e-13 63.2
Msa1170930 AT4G12020.8 50.877 57 26 2 23 79 469 523 7.75e-13 63.2
Msa1170930 AT4G12020.10 50.877 57 26 2 23 79 469 523 7.76e-13 63.2
Msa1170930 AT4G12020.3 50.877 57 26 2 23 79 469 523 7.76e-13 63.2
Msa1170930 AT4G12020.7 50.877 57 26 2 23 79 469 523 7.90e-13 63.2
Msa1170930 AT4G12020.1 50.877 57 26 2 23 79 469 523 7.91e-13 63.2
Msa1170930 AT4G12020.9 50.877 57 26 2 23 79 469 523 7.91e-13 63.2
Msa1170930 AT4G12020.4 50.877 57 26 2 23 79 469 523 8.56e-13 63.2
Msa1170930 AT4G12020.2 50.877 57 26 2 23 79 469 523 8.56e-13 63.2
Msa1170930 AT4G23810.1 49.123 57 27 1 23 77 159 215 8.56e-13 62.8
Msa1170930 AT3G56400.1 43.333 60 32 1 20 77 118 177 1.07e-12 62.4
Msa1170930 AT4G12020.11 50.877 57 26 2 23 79 469 523 1.88e-12 62.0
Msa1170930 AT2G46400.1 45.614 57 29 1 23 77 105 161 5.78e-12 60.5
Msa1170930 AT2G40750.1 43.860 57 30 1 23 77 153 209 7.10e-12 60.1
Msa1170930 AT5G22570.1 43.478 69 33 2 23 85 111 179 2.93e-11 58.2
Msa1170930 AT5G01900.1 45.000 60 31 1 20 77 108 167 3.75e-11 57.8
Msa1170930 AT1G66550.1 44.068 59 31 1 21 77 107 165 6.90e-11 57.0
Msa1170930 AT1G66550.2 44.068 59 31 1 21 77 102 160 7.02e-11 57.0

Find 38 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCACGTGTTTCCTTGC+TGG 0.172147 8_1:+347901 None:intergenic
GTATTTGAGTCAACGTAATA+AGG 0.271448 8_1:-347775 Msa1170930:exon
TTAATATAGAGATGGAAAAT+TGG 0.281523 8_1:-347608 Msa1170930:three_prime_UTR
CGCATCCGGGATTGTGGGTT+TGG 0.306368 8_1:-347797 Msa1170930:CDS
TACAAGTGTAGCACTGTAAG+AGG 0.337436 8_1:-347928 Msa1170930:CDS
GCTCCACGTGTTTCCTTGCT+GGG 0.389925 8_1:+347902 None:intergenic
TATAACTCTTACCGTGGATA+TGG 0.397980 8_1:+348046 None:intergenic
GCGATGCAGGAGAACGCATC+CGG 0.423327 8_1:-347811 Msa1170930:CDS
TACTATTCAAGCTGCGATGC+AGG 0.438847 8_1:-347824 Msa1170930:CDS
TATTTGAGTCAACGTAATAA+GGG 0.444413 8_1:-347774 Msa1170930:exon
GTACTCGTCCGGTGGTATAT+CGG 0.449763 8_1:+348108 None:intergenic
ATTGGAGGAAAGTGGGAGAA+TGG 0.450955 8_1:-347741 Msa1170930:three_prime_UTR
TACGTTACAATCAGCATCGT+TGG 0.473963 8_1:+347865 None:intergenic
GGAGAACGCATCCGGGATTG+TGG 0.492453 8_1:-347803 Msa1170930:CDS
GAGTACTCGTGGCGGAAATA+CGG 0.498267 8_1:-348091 Msa1170930:CDS
AATATGAGTGGAAGTTAAGG+TGG 0.519240 8_1:-347671 Msa1170930:three_prime_UTR
ATGCTGATTGTAACGTATGA+AGG 0.520363 8_1:-347859 Msa1170930:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 8_1:-347802 Msa1170930:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 8_1:+348061 None:intergenic
ATACGGTCAGAAACCGATCA+AGG 0.544971 8_1:-348074 Msa1170930:CDS
ATATGAGTGGAAGTTAAGGT+GGG 0.557236 8_1:-347670 Msa1170930:three_prime_UTR
CGATGCAGGAGAACGCATCC+GGG 0.559528 8_1:-347810 Msa1170930:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 8_1:+347792 None:intergenic
TTCCGCCACGAGTACTCGTC+CGG 0.561775 8_1:+348097 None:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 8_1:-348149 Msa1170930:CDS
GGAGGAAAGTGGGAGAATGG+AGG 0.575698 8_1:-347738 Msa1170930:three_prime_UTR
GCTGTCTTTGAACTTATCGC+CGG 0.599022 8_1:+348130 None:intergenic
CTGTAAGAGGGTGCCCAGCA+AGG 0.607648 8_1:-347915 Msa1170930:CDS
TACGGTCAGAAACCGATCAA+GGG 0.612371 8_1:-348073 Msa1170930:CDS
ATTTGAGTCAACGTAATAAG+GGG 0.619420 8_1:-347773 Msa1170930:exon
TATGAGTGGAAGTTAAGGTG+GGG 0.635698 8_1:-347669 Msa1170930:three_prime_UTR
ACAAGTGTAGCACTGTAAGA+GGG 0.637119 8_1:-347927 Msa1170930:CDS
CGCCACGAGTACTCGTCCGG+TGG 0.638685 8_1:+348100 None:intergenic
TCAAGGGATCACCATATCCA+CGG 0.651372 8_1:-348057 Msa1170930:intron
GTGCCCAGCAAGGAAACACG+TGG 0.663662 8_1:-347905 Msa1170930:CDS
AAAGACAGCCGATATACCAC+CGG 0.663684 8_1:-348116 Msa1170930:CDS
TACCACCGGACGAGTACTCG+TGG 0.691070 8_1:-348102 Msa1170930:CDS
CACCGGACGAGTACTCGTGG+CGG 0.727156 8_1:-348099 Msa1170930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTTTAATATAGAGA+TGG - chr8_1:348145-348164 Msa1170930:CDS 10.0%
!! ATAAAAGTCAACATAATTAA+CGG + chr8_1:347761-347780 None:intergenic 15.0%
!!! TTATTCTTTCTTTTAATCAG+AGG - chr8_1:347806-347825 Msa1170930:CDS 20.0%
!! AATAAGGGGAATTAAAAAAT+TGG - chr8_1:348002-348021 Msa1170930:intron 20.0%
!!! TTTTGTTAGAAAAATATGAG+TGG - chr8_1:348078-348097 Msa1170930:CDS 20.0%
!! TTAATATAGAGATGGAAAAT+TGG - chr8_1:348153-348172 Msa1170930:CDS 20.0%
! TATTTGAGTCAACGTAATAA+GGG - chr8_1:347987-348006 Msa1170930:intron 25.0%
! ATTAAAAAATTGGAGGAAAG+TGG - chr8_1:348012-348031 Msa1170930:intron 25.0%
! TTAAAAAATTGGAGGAAAGT+GGG - chr8_1:348013-348032 Msa1170930:intron 25.0%
! AAAAATATGAGTGGAAGTTA+AGG - chr8_1:348087-348106 Msa1170930:CDS 25.0%
AAAGTCAACATAATTAACGG+TGG + chr8_1:347758-347777 None:intergenic 30.0%
GTATTTGAGTCAACGTAATA+AGG - chr8_1:347986-348005 Msa1170930:intron 30.0%
ATTTGAGTCAACGTAATAAG+GGG - chr8_1:347988-348007 Msa1170930:intron 30.0%
AAGGGGAATTAAAAAATTGG+AGG - chr8_1:348005-348024 Msa1170930:intron 30.0%
TATAACTCTTACCGTGGATA+TGG + chr8_1:347718-347737 None:intergenic 35.0%
ATTGTGTATAACTCTTACCG+TGG + chr8_1:347724-347743 None:intergenic 35.0%
ACATAATTAACGGTGGAGAT+CGG + chr8_1:347751-347770 None:intergenic 35.0%
! ATGCTGATTGTAACGTATGA+AGG - chr8_1:347902-347921 Msa1170930:CDS 35.0%
AATATGAGTGGAAGTTAAGG+TGG - chr8_1:348090-348109 Msa1170930:CDS 35.0%
ATATGAGTGGAAGTTAAGGT+GGG - chr8_1:348091-348110 Msa1170930:CDS 35.0%
TACAAGTGTAGCACTGTAAG+AGG - chr8_1:347833-347852 Msa1170930:CDS 40.0%
ACAAGTGTAGCACTGTAAGA+GGG - chr8_1:347834-347853 Msa1170930:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG + chr8_1:347899-347918 None:intergenic 40.0%
AAATACCAAACCCACAATCC+CGG + chr8_1:347972-347991 None:intergenic 40.0%
TATGAGTGGAAGTTAAGGTG+GGG - chr8_1:348092-348111 Msa1170930:CDS 40.0%
GCTGTCTTTGAACTTATCGC+CGG + chr8_1:347634-347653 None:intergenic 45.0%
AAAGACAGCCGATATACCAC+CGG - chr8_1:347645-347664 Msa1170930:three_prime_UTR 45.0%
ATACGGTCAGAAACCGATCA+AGG - chr8_1:347687-347706 Msa1170930:three_prime_UTR 45.0%
TACGGTCAGAAACCGATCAA+GGG - chr8_1:347688-347707 Msa1170930:three_prime_UTR 45.0%
GGATATGGTGATCCCTTGAT+CGG + chr8_1:347703-347722 None:intergenic 45.0%
TCAAGGGATCACCATATCCA+CGG - chr8_1:347704-347723 Msa1170930:three_prime_UTR 45.0%
TACTATTCAAGCTGCGATGC+AGG - chr8_1:347937-347956 Msa1170930:CDS 45.0%
ATTGGAGGAAAGTGGGAGAA+TGG - chr8_1:348020-348039 Msa1170930:intron 45.0%
! GAAGAGGACTGTGAGAGTAC+CGG - chr8_1:347612-347631 Msa1170930:three_prime_UTR 50.0%
GTACTCGTCCGGTGGTATAT+CGG + chr8_1:347656-347675 None:intergenic 50.0%
! GAGTACTCGTGGCGGAAATA+CGG - chr8_1:347670-347689 Msa1170930:three_prime_UTR 50.0%
GCTCCACGTGTTTCCTTGCT+GGG + chr8_1:347862-347881 None:intergenic 55.0%
GAGAACGCATCCGGGATTGT+GGG - chr8_1:347959-347978 Msa1170930:intron 55.0%
GGAGGAAAGTGGGAGAATGG+AGG - chr8_1:348023-348042 Msa1170930:intron 55.0%
TACCACCGGACGAGTACTCG+TGG - chr8_1:347659-347678 Msa1170930:three_prime_UTR 60.0%
TTCCGCCACGAGTACTCGTC+CGG + chr8_1:347667-347686 None:intergenic 60.0%
!! CTGTAAGAGGGTGCCCAGCA+AGG - chr8_1:347846-347865 Msa1170930:CDS 60.0%
GTGCCCAGCAAGGAAACACG+TGG - chr8_1:347856-347875 Msa1170930:CDS 60.0%
CGCTCCACGTGTTTCCTTGC+TGG + chr8_1:347863-347882 None:intergenic 60.0%
GCGATGCAGGAGAACGCATC+CGG - chr8_1:347950-347969 Msa1170930:intron 60.0%
CGATGCAGGAGAACGCATCC+GGG - chr8_1:347951-347970 Msa1170930:intron 60.0%
GGAGAACGCATCCGGGATTG+TGG - chr8_1:347958-347977 Msa1170930:intron 60.0%
CGCATCCGGGATTGTGGGTT+TGG - chr8_1:347964-347983 Msa1170930:intron 60.0%
CACCGGACGAGTACTCGTGG+CGG - chr8_1:347662-347681 Msa1170930:three_prime_UTR 65.0%
CGCCACGAGTACTCGTCCGG+TGG + chr8_1:347664-347683 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 347601 348182 347601 ID=Msa1170930;Name=Msa1170930
chr8_1 mRNA 347601 348182 347601 ID=Msa1170930-mRNA-1;Parent=Msa1170930;Name=Msa1170930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|0.5|2|179|100
chr8_1 exon 347601 347957 347601 ID=Msa1170930-mRNA-1:exon:95;Parent=Msa1170930-mRNA-1
chr8_1 exon 348058 348182 348058 ID=Msa1170930-mRNA-1:exon:94;Parent=Msa1170930-mRNA-1
chr8_1 CDS 348058 348182 348058 ID=Msa1170930-mRNA-1:cds;Parent=Msa1170930-mRNA-1
chr8_1 CDS 347780 347957 347780 ID=Msa1170930-mRNA-1:cds;Parent=Msa1170930-mRNA-1
chr8_1 three_prime_UTR 347601 347779 347601 ID=Msa1170930-mRNA-1:three_prime_utr;Parent=Msa1170930-mRNA-1
Gene Sequence

>Msa1170930

AAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACAGCCGATATACCACCGGACGAGTACTCGTGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGAGGCTATTACAAGTGTAGCACTGTAAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACAGATGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACATACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>Msa1170930

KNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*