Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171650 | XP_024633826.2 | 87.778 | 270 | 20 | 4 | 1 | 266 | 1 | 261 | 3.69e-169 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171650 | sp|Q9LVU8|RKD4_ARATH | 57.143 | 105 | 45 | 0 | 159 | 263 | 148 | 252 | 2.21e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1171650 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171650 | MtrunA17_Chr3g0127001 | 87.778 | 270 | 20 | 4 | 1 | 266 | 1 | 261 | 3.40e-173 | 478 |
| Msa1171650 | MtrunA17_Chr1g0182631 | 86.667 | 240 | 23 | 3 | 30 | 266 | 1 | 234 | 8.32e-152 | 422 |
| Msa1171650 | MtrunA17_Chr4g0060761 | 50.000 | 116 | 49 | 2 | 156 | 262 | 152 | 267 | 5.49e-30 | 113 |
| Msa1171650 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 159 | 264 | 59 | 170 | 7.90e-30 | 110 |
| Msa1171650 | MtrunA17_Chr5g0406901 | 38.400 | 125 | 59 | 2 | 153 | 259 | 190 | 314 | 5.59e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171650 | AT5G53040.1 | 57.143 | 105 | 45 | 0 | 159 | 263 | 148 | 252 | 2.24e-34 | 125 |
| Msa1171650 | AT5G66990.1 | 53.153 | 111 | 41 | 2 | 164 | 263 | 164 | 274 | 1.11e-31 | 118 |
| Msa1171650 | AT1G18790.1 | 49.565 | 115 | 48 | 1 | 156 | 260 | 125 | 239 | 3.86e-30 | 114 |
| Msa1171650 | AT1G74480.1 | 48.182 | 110 | 47 | 1 | 157 | 256 | 133 | 242 | 4.55e-29 | 112 |
| Msa1171650 | AT4G35590.2 | 32.593 | 135 | 71 | 2 | 143 | 257 | 169 | 303 | 7.18e-17 | 79.3 |
| Msa1171650 | AT4G35590.1 | 32.593 | 135 | 71 | 2 | 143 | 257 | 219 | 353 | 1.25e-16 | 79.0 |
| Msa1171650 | AT5G16100.2 | 37.113 | 97 | 53 | 1 | 147 | 235 | 342 | 438 | 1.84e-12 | 67.0 |
Find 47 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAGCAGCCATTGTTAA+AGG | 0.208533 | 8_1:+1475022 | None:intergenic |
| TTGGAGCCTTGAGTGATTTC+AGG | 0.214370 | 8_1:+1475901 | None:intergenic |
| AATGTTGTCTTGCCTGAGTT+GGG | 0.325768 | 8_1:-1475274 | Msa1171650:CDS |
| CAATGTTGTCTTGCCTGAGT+TGG | 0.335905 | 8_1:-1475275 | Msa1171650:CDS |
| ATGATTTCTTTGAGTTTGAT+TGG | 0.342407 | 8_1:-1475426 | Msa1171650:CDS |
| GAAGATGTTGGAGAAACTTC+CGG | 0.360968 | 8_1:-1474094 | Msa1171650:CDS |
| GCCTTGAGTGATTTCAGGTT+GGG | 0.378542 | 8_1:+1475906 | None:intergenic |
| CAGCAATAGTCTCACCTTTG+TGG | 0.390633 | 8_1:+1475242 | None:intergenic |
| AAGATGTTGGAGAAACTTCC+GGG | 0.393818 | 8_1:-1474093 | Msa1171650:CDS |
| TCATCATTCAAATCCATTCC+CGG | 0.427588 | 8_1:+1474075 | None:intergenic |
| TTGTGAAGAAAGAGAAGGAA+TGG | 0.429732 | 8_1:-1475171 | Msa1171650:CDS |
| AGAATTGTCATTAGTTCCAT+TGG | 0.430301 | 8_1:-1475140 | Msa1171650:CDS |
| CAGAAAACTGAGGAGCTTGA+TGG | 0.447810 | 8_1:-1474933 | Msa1171650:CDS |
| GTACGAGTACTAGCATCATT+AGG | 0.450426 | 8_1:-1475096 | Msa1171650:CDS |
| CTCGTACTGCTACTTGTACT+TGG | 0.454025 | 8_1:+1475112 | None:intergenic |
| GGTACTCATCGACAACCTTA+AGG | 0.457457 | 8_1:-1474912 | Msa1171650:intron |
| GTTGGAGAAACTTCCGGGAA+TGG | 0.462988 | 8_1:-1474088 | Msa1171650:CDS |
| CCTCAAAATTATTCTGATCA+AGG | 0.463476 | 8_1:+1475314 | None:intergenic |
| TGATTTCTTTGAGTTTGATT+GGG | 0.465378 | 8_1:-1475425 | Msa1171650:CDS |
| TGTTGTGTAATGCAGGAAAA+GGG | 0.474901 | 8_1:-1474153 | Msa1171650:intron |
| TGTGAAGAAAGAGAAGGAAT+GGG | 0.479018 | 8_1:-1475170 | Msa1171650:CDS |
| AACTCAAAGAAATCATCAAA+TGG | 0.481692 | 8_1:+1475433 | None:intergenic |
| AAATCACTCAAGGCTCCAAC+TGG | 0.487286 | 8_1:-1475897 | Msa1171650:CDS |
| ATGATGAAATCAAGAAGCTT+AGG | 0.499327 | 8_1:-1474059 | Msa1171650:CDS |
| CTTGTACTTGGCAATGCCAA+TGG | 0.515278 | 8_1:+1475124 | None:intergenic |
| GCAGGAAAAGGGTTTGACTA+AGG | 0.516403 | 8_1:-1474142 | Msa1171650:intron |
| GGAGAAGCAAAAGAAGATGT+TGG | 0.518512 | 8_1:-1474106 | Msa1171650:CDS |
| GCTTCTGTGAAAACTGAAAG+TGG | 0.520217 | 8_1:-1475196 | Msa1171650:CDS |
| GACTAAGGAAGTTGCCATGT+TGG | 0.527747 | 8_1:-1474127 | Msa1171650:CDS |
| ATGTTGTCTTGCCTGAGTTG+GGG | 0.533975 | 8_1:-1475273 | Msa1171650:CDS |
| AGCCTTGAGTGATTTCAGGT+TGG | 0.554392 | 8_1:+1475905 | None:intergenic |
| TTGAACATTGTGATACCAGT+TGG | 0.557847 | 8_1:+1475882 | None:intergenic |
| TGGTTGTAATGCCCCAACTC+AGG | 0.557980 | 8_1:+1475262 | None:intergenic |
| AATTATTCTGATCAAGGTGT+GGG | 0.571228 | 8_1:+1475320 | None:intergenic |
| CTCAGGCAAGACAACATTGA+GGG | 0.577274 | 8_1:+1475279 | None:intergenic |
| GTACTAGCATCATTAGGAAG+AGG | 0.587268 | 8_1:-1475090 | Msa1171650:CDS |
| TATTCTGATCAAGGTGTGGG+AGG | 0.607927 | 8_1:+1475323 | None:intergenic |
| ACCCAACCTGAAATCACTCA+AGG | 0.608828 | 8_1:-1475907 | Msa1171650:CDS |
| AAATTATTCTGATCAAGGTG+TGG | 0.609905 | 8_1:+1475319 | None:intergenic |
| GCAGGGAGCTCAATATCACT+AGG | 0.629741 | 8_1:-1474964 | Msa1171650:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 8_1:-1475010 | Msa1171650:CDS |
| TCAGGCAAGACAACATTGAG+GGG | 0.654617 | 8_1:+1475280 | None:intergenic |
| ACTATTGCTGATGCTGAGAG+TGG | 0.657284 | 8_1:-1475229 | Msa1171650:CDS |
| ACTCAGGCAAGACAACATTG+AGG | 0.692460 | 8_1:+1475278 | None:intergenic |
| GGGAGCTCAATATCACTAGG+TGG | 0.701034 | 8_1:-1474961 | Msa1171650:CDS |
| TTGGGGCATTACAACCACAA+AGG | 0.718163 | 8_1:-1475256 | Msa1171650:CDS |
| GGTGGCCTCACAGAAAACTG+AGG | 0.738213 | 8_1:-1474943 | Msa1171650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAACATTAAAAAA+GGG | + | chr8_1:1474425-1474444 | None:intergenic | 10.0% |
| !! | AGTAAAAAACATAAAAAAAT+TGG | + | chr8_1:1475381-1475400 | None:intergenic | 10.0% |
| !! | AAAAACAAAACATTAAAAAA+GGG | + | chr8_1:1474425-1474444 | None:intergenic | 10.0% |
| !! | AGTAAAAAACATAAAAAAAT+TGG | + | chr8_1:1475381-1475400 | None:intergenic | 10.0% |
| !! | AACATAGAAAAAAAAAAAGA+AGG | + | chr8_1:1474211-1474230 | None:intergenic | 15.0% |
| !! | AAAACAAAACATTAAAAAAG+GGG | + | chr8_1:1474424-1474443 | None:intergenic | 15.0% |
| !! | GAAAAACAAAACATTAAAAA+AGG | + | chr8_1:1474426-1474445 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | + | chr8_1:1475305-1475324 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | - | chr8_1:1475725-1475744 | Msa1171650:intron | 15.0% |
| !! | AACATAGAAAAAAAAAAAGA+AGG | + | chr8_1:1474211-1474230 | None:intergenic | 15.0% |
| !! | AAAACAAAACATTAAAAAAG+GGG | + | chr8_1:1474424-1474443 | None:intergenic | 15.0% |
| !! | GAAAAACAAAACATTAAAAA+AGG | + | chr8_1:1474426-1474445 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | + | chr8_1:1475305-1475324 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | - | chr8_1:1475725-1475744 | Msa1171650:intron | 15.0% |
| !!! | TTTTTTTTTCTATGTTCTTG+TGG | - | chr8_1:1474215-1474234 | Msa1171650:intron | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | - | chr8_1:1474457-1474476 | Msa1171650:intron | 20.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | + | chr8_1:1474538-1474557 | None:intergenic | 20.0% |
| !!! | GAATATTCTTTTTCTTTGTT+TGG | - | chr8_1:1475308-1475327 | Msa1171650:CDS | 20.0% |
| !!! | TTTTTTTTTCTATGTTCTTG+TGG | - | chr8_1:1474215-1474234 | Msa1171650:intron | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | - | chr8_1:1474457-1474476 | Msa1171650:intron | 20.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | + | chr8_1:1474538-1474557 | None:intergenic | 20.0% |
| !!! | GAATATTCTTTTTCTTTGTT+TGG | - | chr8_1:1475308-1475327 | Msa1171650:CDS | 20.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | + | chr8_1:1474417-1474436 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+TGG | + | chr8_1:1474491-1474510 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | - | chr8_1:1474495-1474514 | Msa1171650:intron | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | - | chr8_1:1474496-1474515 | Msa1171650:intron | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | - | chr8_1:1474889-1474908 | Msa1171650:intron | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | + | chr8_1:1475027-1475046 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | + | chr8_1:1475069-1475088 | None:intergenic | 25.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | - | chr8_1:1475086-1475105 | Msa1171650:CDS | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | + | chr8_1:1475092-1475111 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | + | chr8_1:1475162-1475181 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | + | chr8_1:1475405-1475424 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | - | chr8_1:1475404-1475423 | Msa1171650:CDS | 25.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | + | chr8_1:1474417-1474436 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+TGG | + | chr8_1:1474491-1474510 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | - | chr8_1:1474495-1474514 | Msa1171650:intron | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | - | chr8_1:1474496-1474515 | Msa1171650:intron | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | - | chr8_1:1474889-1474908 | Msa1171650:intron | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | + | chr8_1:1475027-1475046 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | + | chr8_1:1475069-1475088 | None:intergenic | 25.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | - | chr8_1:1475086-1475105 | Msa1171650:CDS | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | + | chr8_1:1475092-1475111 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | + | chr8_1:1475162-1475181 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | + | chr8_1:1475405-1475424 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | - | chr8_1:1475404-1475423 | Msa1171650:CDS | 25.0% |
| CATTGAAAGTAGTGATCATA+TGG | + | chr8_1:1474120-1474139 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | + | chr8_1:1474145-1474164 | None:intergenic | 30.0% | |
| AACAAAGATATGACAGGTTA+AGG | + | chr8_1:1474184-1474203 | None:intergenic | 30.0% | |
| GGAAAAAACAAAGATATGAC+AGG | + | chr8_1:1474190-1474209 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | - | chr8_1:1474331-1474350 | Msa1171650:intron | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | + | chr8_1:1474604-1474623 | None:intergenic | 30.0% | |
| AAATTATTCTGATCAAGGTG+TGG | + | chr8_1:1474605-1474624 | None:intergenic | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | + | chr8_1:1474610-1474629 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | - | chr8_1:1474607-1474626 | Msa1171650:intron | 30.0% |
| AGAATTGTCATTAGTTCCAT+TGG | - | chr8_1:1474781-1474800 | Msa1171650:intron | 30.0% | |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | + | chr8_1:1474942-1474961 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | - | chr8_1:1474940-1474959 | Msa1171650:CDS | 30.0% |
| TTCATGTACTTGAAAATGTG+GGG | + | chr8_1:1475068-1475087 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | + | chr8_1:1475070-1475089 | None:intergenic | 30.0% | |
| ! | TGTACCTTAGACTAAGTTTT+TGG | - | chr8_1:1475125-1475144 | Msa1171650:CDS | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | + | chr8_1:1475256-1475275 | None:intergenic | 30.0% |
| CATTTCAAATACATCTACGA+TGG | - | chr8_1:1475429-1475448 | Msa1171650:CDS | 30.0% | |
| TTAGTTTCTTCGATAGTAGA+TGG | - | chr8_1:1475523-1475542 | Msa1171650:intron | 30.0% | |
| !! | ATTGTTTTGTTGTGTAATGC+AGG | - | chr8_1:1475761-1475780 | Msa1171650:intron | 30.0% |
| ATGATGAAATCAAGAAGCTT+AGG | - | chr8_1:1475862-1475881 | Msa1171650:CDS | 30.0% | |
| CATTGAAAGTAGTGATCATA+TGG | + | chr8_1:1474120-1474139 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | + | chr8_1:1474145-1474164 | None:intergenic | 30.0% | |
| AACAAAGATATGACAGGTTA+AGG | + | chr8_1:1474184-1474203 | None:intergenic | 30.0% | |
| GGAAAAAACAAAGATATGAC+AGG | + | chr8_1:1474190-1474209 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | - | chr8_1:1474331-1474350 | Msa1171650:intron | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | + | chr8_1:1474604-1474623 | None:intergenic | 30.0% | |
| AAATTATTCTGATCAAGGTG+TGG | + | chr8_1:1474605-1474624 | None:intergenic | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | + | chr8_1:1474610-1474629 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | - | chr8_1:1474607-1474626 | Msa1171650:intron | 30.0% |
| AGAATTGTCATTAGTTCCAT+TGG | - | chr8_1:1474781-1474800 | Msa1171650:intron | 30.0% | |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | + | chr8_1:1474942-1474961 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | - | chr8_1:1474940-1474959 | Msa1171650:CDS | 30.0% |
| TTCATGTACTTGAAAATGTG+GGG | + | chr8_1:1475068-1475087 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | + | chr8_1:1475070-1475089 | None:intergenic | 30.0% | |
| ! | TGTACCTTAGACTAAGTTTT+TGG | - | chr8_1:1475125-1475144 | Msa1171650:CDS | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | + | chr8_1:1475256-1475275 | None:intergenic | 30.0% |
| CATTTCAAATACATCTACGA+TGG | - | chr8_1:1475429-1475448 | Msa1171650:CDS | 30.0% | |
| TTAGTTTCTTCGATAGTAGA+TGG | - | chr8_1:1475523-1475542 | Msa1171650:intron | 30.0% | |
| !! | ATTGTTTTGTTGTGTAATGC+AGG | - | chr8_1:1475761-1475780 | Msa1171650:intron | 30.0% |
| ATGATGAAATCAAGAAGCTT+AGG | - | chr8_1:1475862-1475881 | Msa1171650:CDS | 30.0% | |
| TTGAACATTGTGATACCAGT+TGG | + | chr8_1:1474042-1474061 | None:intergenic | 35.0% | |
| CGTGGAATGAAAAACAGAAA+AGG | + | chr8_1:1474149-1474168 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | - | chr8_1:1474745-1474764 | Msa1171650:intron | 35.0% |
| TTGTGAAGAAAGAGAAGGAA+TGG | - | chr8_1:1474750-1474769 | Msa1171650:intron | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | - | chr8_1:1474751-1474770 | Msa1171650:intron | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | + | chr8_1:1474902-1474921 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr8_1:1474911-1474930 | Msa1171650:intron | 35.0% | |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | - | chr8_1:1474939-1474958 | Msa1171650:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | + | chr8_1:1474943-1474962 | None:intergenic | 35.0% |
| TGGACCAAAAACTTAGTCTA+AGG | + | chr8_1:1475132-1475151 | None:intergenic | 35.0% | |
| CTATGAAACATGACAACTCT+AGG | - | chr8_1:1475211-1475230 | Msa1171650:CDS | 35.0% | |
| ! | CTTTGTTTGGACACTTAGAT+CGG | - | chr8_1:1475321-1475340 | Msa1171650:CDS | 35.0% |
| ! | AAAATGTATCGACGCAACAA+TGG | - | chr8_1:1475464-1475483 | Msa1171650:intron | 35.0% |
| TTGTTGTGTAATGCAGGAAA+AGG | - | chr8_1:1475767-1475786 | Msa1171650:intron | 35.0% | |
| TGTTGTGTAATGCAGGAAAA+GGG | - | chr8_1:1475768-1475787 | Msa1171650:intron | 35.0% | |
| TCATCATTCAAATCCATTCC+CGG | + | chr8_1:1475849-1475868 | None:intergenic | 35.0% | |
| TTGAACATTGTGATACCAGT+TGG | + | chr8_1:1474042-1474061 | None:intergenic | 35.0% | |
| CGTGGAATGAAAAACAGAAA+AGG | + | chr8_1:1474149-1474168 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | - | chr8_1:1474745-1474764 | Msa1171650:intron | 35.0% |
| TTGTGAAGAAAGAGAAGGAA+TGG | - | chr8_1:1474750-1474769 | Msa1171650:intron | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | - | chr8_1:1474751-1474770 | Msa1171650:intron | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | + | chr8_1:1474902-1474921 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr8_1:1474911-1474930 | Msa1171650:intron | 35.0% | |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | - | chr8_1:1474939-1474958 | Msa1171650:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | + | chr8_1:1474943-1474962 | None:intergenic | 35.0% |
| TGGACCAAAAACTTAGTCTA+AGG | + | chr8_1:1475132-1475151 | None:intergenic | 35.0% | |
| CTATGAAACATGACAACTCT+AGG | - | chr8_1:1475211-1475230 | Msa1171650:CDS | 35.0% | |
| ! | CTTTGTTTGGACACTTAGAT+CGG | - | chr8_1:1475321-1475340 | Msa1171650:CDS | 35.0% |
| ! | AAAATGTATCGACGCAACAA+TGG | - | chr8_1:1475464-1475483 | Msa1171650:intron | 35.0% |
| TTGTTGTGTAATGCAGGAAA+AGG | - | chr8_1:1475767-1475786 | Msa1171650:intron | 35.0% | |
| TGTTGTGTAATGCAGGAAAA+GGG | - | chr8_1:1475768-1475787 | Msa1171650:intron | 35.0% | |
| TCATCATTCAAATCCATTCC+CGG | + | chr8_1:1475849-1475868 | None:intergenic | 35.0% | |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | + | chr8_1:1474065-1474084 | None:intergenic | 40.0% |
| ACGACACAGACAAGTAAGTA+TGG | - | chr8_1:1474072-1474091 | Msa1171650:CDS | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | - | chr8_1:1474076-1474095 | Msa1171650:CDS | 40.0% | |
| ! | TTAAGGTACTCTACATGTCG+TGG | + | chr8_1:1474167-1474186 | None:intergenic | 40.0% |
| !! | CATTCTCTTTGAGACTTTCG+AGG | - | chr8_1:1474356-1474375 | Msa1171650:intron | 40.0% |
| TTCGAGGTCGATATGGAATT+TGG | - | chr8_1:1474372-1474391 | Msa1171650:intron | 40.0% | |
| AATGTTGTCTTGCCTGAGTT+GGG | - | chr8_1:1474647-1474666 | Msa1171650:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | - | chr8_1:1474725-1474744 | Msa1171650:intron | 40.0% | |
| GTACGAGTACTAGCATCATT+AGG | - | chr8_1:1474825-1474844 | Msa1171650:intron | 40.0% | |
| GTACTAGCATCATTAGGAAG+AGG | - | chr8_1:1474831-1474850 | Msa1171650:intron | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | + | chr8_1:1475158-1475177 | None:intergenic | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | + | chr8_1:1475159-1475178 | None:intergenic | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | + | chr8_1:1475811-1475830 | None:intergenic | 40.0% |
| GGAGAAGCAAAAGAAGATGT+TGG | - | chr8_1:1475815-1475834 | Msa1171650:intron | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | - | chr8_1:1475827-1475846 | Msa1171650:intron | 40.0% | |
| AAGATGTTGGAGAAACTTCC+GGG | - | chr8_1:1475828-1475847 | Msa1171650:intron | 40.0% | |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | + | chr8_1:1474065-1474084 | None:intergenic | 40.0% |
| ACGACACAGACAAGTAAGTA+TGG | - | chr8_1:1474072-1474091 | Msa1171650:CDS | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | - | chr8_1:1474076-1474095 | Msa1171650:CDS | 40.0% | |
| ! | TTAAGGTACTCTACATGTCG+TGG | + | chr8_1:1474167-1474186 | None:intergenic | 40.0% |
| !! | CATTCTCTTTGAGACTTTCG+AGG | - | chr8_1:1474356-1474375 | Msa1171650:intron | 40.0% |
| TTCGAGGTCGATATGGAATT+TGG | - | chr8_1:1474372-1474391 | Msa1171650:intron | 40.0% | |
| AATGTTGTCTTGCCTGAGTT+GGG | - | chr8_1:1474647-1474666 | Msa1171650:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | - | chr8_1:1474725-1474744 | Msa1171650:intron | 40.0% | |
| GTACGAGTACTAGCATCATT+AGG | - | chr8_1:1474825-1474844 | Msa1171650:intron | 40.0% | |
| GTACTAGCATCATTAGGAAG+AGG | - | chr8_1:1474831-1474850 | Msa1171650:intron | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | + | chr8_1:1475158-1475177 | None:intergenic | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | + | chr8_1:1475159-1475178 | None:intergenic | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | + | chr8_1:1475811-1475830 | None:intergenic | 40.0% |
| GGAGAAGCAAAAGAAGATGT+TGG | - | chr8_1:1475815-1475834 | Msa1171650:intron | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | - | chr8_1:1475827-1475846 | Msa1171650:intron | 40.0% | |
| AAGATGTTGGAGAAACTTCC+GGG | - | chr8_1:1475828-1475847 | Msa1171650:intron | 40.0% | |
| ACCCAACCTGAAATCACTCA+AGG | - | chr8_1:1474014-1474033 | Msa1171650:CDS | 45.0% | |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | + | chr8_1:1474018-1474037 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | + | chr8_1:1474019-1474038 | None:intergenic | 45.0% |
| TTGGAGCCTTGAGTGATTTC+AGG | + | chr8_1:1474023-1474042 | None:intergenic | 45.0% | |
| AAATCACTCAAGGCTCCAAC+TGG | - | chr8_1:1474024-1474043 | Msa1171650:CDS | 45.0% | |
| TGAGACTTTCGAGGTCGATA+TGG | - | chr8_1:1474365-1474384 | Msa1171650:intron | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | + | chr8_1:1474601-1474620 | None:intergenic | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | + | chr8_1:1474644-1474663 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | + | chr8_1:1474645-1474664 | None:intergenic | 45.0% | |
| ACTCAGGCAAGACAACATTG+AGG | + | chr8_1:1474646-1474665 | None:intergenic | 45.0% | |
| CAATGTTGTCTTGCCTGAGT+TGG | - | chr8_1:1474646-1474665 | Msa1171650:intron | 45.0% | |
| ATGTTGTCTTGCCTGAGTTG+GGG | - | chr8_1:1474648-1474667 | Msa1171650:intron | 45.0% | |
| ! | TTGGGGCATTACAACCACAA+AGG | - | chr8_1:1474665-1474684 | Msa1171650:intron | 45.0% |
| CAGCAATAGTCTCACCTTTG+TGG | + | chr8_1:1474682-1474701 | None:intergenic | 45.0% | |
| ACTATTGCTGATGCTGAGAG+TGG | - | chr8_1:1474692-1474711 | Msa1171650:intron | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | + | chr8_1:1474800-1474819 | None:intergenic | 45.0% | |
| ! | CTCGTACTGCTACTTGTACT+TGG | + | chr8_1:1474812-1474831 | None:intergenic | 45.0% |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | + | chr8_1:1474986-1475005 | None:intergenic | 45.0% |
| CAGAAAACTGAGGAGCTTGA+TGG | - | chr8_1:1474988-1475007 | Msa1171650:CDS | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | - | chr8_1:1475009-1475028 | Msa1171650:CDS | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | - | chr8_1:1475779-1475798 | Msa1171650:intron | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | - | chr8_1:1475794-1475813 | Msa1171650:intron | 45.0% | |
| ACCCAACCTGAAATCACTCA+AGG | - | chr8_1:1474014-1474033 | Msa1171650:CDS | 45.0% | |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | + | chr8_1:1474018-1474037 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | + | chr8_1:1474019-1474038 | None:intergenic | 45.0% |
| TTGGAGCCTTGAGTGATTTC+AGG | + | chr8_1:1474023-1474042 | None:intergenic | 45.0% | |
| AAATCACTCAAGGCTCCAAC+TGG | - | chr8_1:1474024-1474043 | Msa1171650:CDS | 45.0% | |
| TGAGACTTTCGAGGTCGATA+TGG | - | chr8_1:1474365-1474384 | Msa1171650:intron | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | + | chr8_1:1474601-1474620 | None:intergenic | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | + | chr8_1:1474644-1474663 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | + | chr8_1:1474645-1474664 | None:intergenic | 45.0% | |
| ACTCAGGCAAGACAACATTG+AGG | + | chr8_1:1474646-1474665 | None:intergenic | 45.0% | |
| CAATGTTGTCTTGCCTGAGT+TGG | - | chr8_1:1474646-1474665 | Msa1171650:intron | 45.0% | |
| ATGTTGTCTTGCCTGAGTTG+GGG | - | chr8_1:1474648-1474667 | Msa1171650:intron | 45.0% | |
| ! | TTGGGGCATTACAACCACAA+AGG | - | chr8_1:1474665-1474684 | Msa1171650:intron | 45.0% |
| CAGCAATAGTCTCACCTTTG+TGG | + | chr8_1:1474682-1474701 | None:intergenic | 45.0% | |
| ACTATTGCTGATGCTGAGAG+TGG | - | chr8_1:1474692-1474711 | Msa1171650:intron | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | + | chr8_1:1474800-1474819 | None:intergenic | 45.0% | |
| ! | CTCGTACTGCTACTTGTACT+TGG | + | chr8_1:1474812-1474831 | None:intergenic | 45.0% |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | + | chr8_1:1474986-1475005 | None:intergenic | 45.0% |
| CAGAAAACTGAGGAGCTTGA+TGG | - | chr8_1:1474988-1475007 | Msa1171650:CDS | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | - | chr8_1:1475009-1475028 | Msa1171650:CDS | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | - | chr8_1:1475779-1475798 | Msa1171650:intron | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | - | chr8_1:1475794-1475813 | Msa1171650:intron | 45.0% | |
| TGGTTGTAATGCCCCAACTC+AGG | + | chr8_1:1474662-1474681 | None:intergenic | 50.0% | |
| GCAGGGAGCTCAATATCACT+AGG | - | chr8_1:1474957-1474976 | Msa1171650:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | - | chr8_1:1474960-1474979 | Msa1171650:CDS | 50.0% | |
| CTTGAAAATGTGGGGCAGAG+TGG | + | chr8_1:1475060-1475079 | None:intergenic | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | - | chr8_1:1475833-1475852 | Msa1171650:intron | 50.0% | |
| TGGTTGTAATGCCCCAACTC+AGG | + | chr8_1:1474662-1474681 | None:intergenic | 50.0% | |
| GCAGGGAGCTCAATATCACT+AGG | - | chr8_1:1474957-1474976 | Msa1171650:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | - | chr8_1:1474960-1474979 | Msa1171650:CDS | 50.0% | |
| CTTGAAAATGTGGGGCAGAG+TGG | + | chr8_1:1475060-1475079 | None:intergenic | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | - | chr8_1:1475833-1475852 | Msa1171650:intron | 50.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | - | chr8_1:1474978-1474997 | Msa1171650:CDS | 55.0% | |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | - | chr8_1:1475140-1475159 | Msa1171650:CDS | 55.0% |
| !! | TTTTTGGTCCATGACCCGCC+GGG | - | chr8_1:1475141-1475160 | Msa1171650:CDS | 55.0% |
| TTATCATTCCCGGCGGGTCA+TGG | + | chr8_1:1475152-1475171 | None:intergenic | 55.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | - | chr8_1:1474978-1474997 | Msa1171650:CDS | 55.0% | |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | - | chr8_1:1475140-1475159 | Msa1171650:CDS | 55.0% |
| !! | TTTTTGGTCCATGACCCGCC+GGG | - | chr8_1:1475141-1475160 | Msa1171650:CDS | 55.0% |
| TTATCATTCCCGGCGGGTCA+TGG | + | chr8_1:1475152-1475171 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1474002 | 1475941 | 1474002 | ID=Msa1171650;Name=Msa1171650 |
| chr8_1 | mRNA | 1474002 | 1475941 | 1474002 | ID=Msa1171650-mRNA-1;Parent=Msa1171650;Name=Msa1171650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|266 |
| chr8_1 | exon | 1475859 | 1475941 | 1475859 | ID=Msa1171650-mRNA-1:exon:450;Parent=Msa1171650-mRNA-1 |
| chr8_1 | exon | 1474913 | 1475471 | 1474913 | ID=Msa1171650-mRNA-1:exon:449;Parent=Msa1171650-mRNA-1 |
| chr8_1 | exon | 1474002 | 1474160 | 1474002 | ID=Msa1171650-mRNA-1:exon:448;Parent=Msa1171650-mRNA-1 |
| chr8_1 | CDS | 1475859 | 1475941 | 1475859 | ID=Msa1171650-mRNA-1:cds;Parent=Msa1171650-mRNA-1 |
| chr8_1 | CDS | 1474913 | 1475471 | 1474913 | ID=Msa1171650-mRNA-1:cds;Parent=Msa1171650-mRNA-1 |
| chr8_1 | CDS | 1474002 | 1474160 | 1474002 | ID=Msa1171650-mRNA-1:cds;Parent=Msa1171650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
