Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171660 | sp|Q9LVU8|RKD4_ARATH | 52.381 | 105 | 50 | 0 | 191 | 295 | 148 | 252 | 2.27e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171660 | G7J7G0 | 65.552 | 299 | 64 | 4 | 1 | 298 | 1 | 261 | 1.17e-132 | 386 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1171660 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171660 | MtrunA17_Chr3g0127001 | 65.552 | 299 | 64 | 4 | 1 | 298 | 1 | 261 | 2.26e-136 | 386 |
| Msa1171660 | MtrunA17_Chr1g0182631 | 64.074 | 270 | 60 | 4 | 30 | 298 | 1 | 234 | 3.08e-118 | 339 |
| Msa1171660 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 191 | 296 | 59 | 170 | 3.70e-29 | 110 |
| Msa1171660 | MtrunA17_Chr4g0060761 | 45.370 | 108 | 50 | 1 | 196 | 294 | 160 | 267 | 1.65e-27 | 107 |
| Msa1171660 | MtrunA17_Chr5g0406901 | 37.600 | 125 | 60 | 2 | 185 | 291 | 190 | 314 | 5.54e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171660 | AT5G53040.1 | 52.381 | 105 | 50 | 0 | 191 | 295 | 148 | 252 | 2.31e-32 | 120 |
| Msa1171660 | AT5G66990.1 | 49.550 | 111 | 45 | 1 | 196 | 295 | 164 | 274 | 1.91e-31 | 119 |
| Msa1171660 | AT1G18790.1 | 45.161 | 124 | 54 | 2 | 179 | 292 | 120 | 239 | 8.70e-28 | 108 |
| Msa1171660 | AT1G74480.1 | 46.364 | 110 | 49 | 1 | 189 | 288 | 133 | 242 | 3.37e-27 | 107 |
| Msa1171660 | AT4G35590.2 | 34.328 | 134 | 68 | 2 | 179 | 292 | 173 | 306 | 1.76e-17 | 81.6 |
| Msa1171660 | AT4G35590.1 | 34.328 | 134 | 68 | 2 | 179 | 292 | 223 | 356 | 2.52e-17 | 81.6 |
| Msa1171660 | AT5G16100.2 | 37.363 | 91 | 49 | 1 | 185 | 267 | 348 | 438 | 6.26e-12 | 66.2 |
Find 56 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTAAAGCAACATTTA+AGG | 0.169846 | 8_1:+1493710 | None:intergenic |
| CATTGCAATTTGATGATATA+AGG | 0.198698 | 8_1:-1493395 | Msa1171660:CDS |
| AAATGTTGCTTTACCTGAAA+TGG | 0.239415 | 8_1:-1493706 | Msa1171660:CDS |
| TCTTCATTCAATTCCATTTC+AGG | 0.242189 | 8_1:+1492909 | None:intergenic |
| TCAGTGTAATGCCCCATTTC+AGG | 0.244696 | 8_1:+1493693 | None:intergenic |
| TTGTAGCCTTGAGCGATTTC+AGG | 0.264499 | 8_1:+1494312 | None:intergenic |
| GCCTTGAGCGATTTCAGGTT+GGG | 0.343692 | 8_1:+1494317 | None:intergenic |
| AACTACTTTGATCAAGGTAT+TGG | 0.343714 | 8_1:+1493751 | None:intergenic |
| TCAGGTAAAGCAACATTTAA+GGG | 0.355156 | 8_1:+1493711 | None:intergenic |
| AATGTTGCTTTACCTGAAAT+GGG | 0.356567 | 8_1:-1493705 | Msa1171660:CDS |
| TTGTGAACAAACAAGAGAAA+TGG | 0.359147 | 8_1:-1493599 | Msa1171660:CDS |
| ATGATTTCATTGAGTTTGAT+TGG | 0.364629 | 8_1:-1493857 | Msa1171660:CDS |
| GCTTACTTGTCTGTGTTGTT+TGG | 0.372451 | 8_1:+1494264 | None:intergenic |
| GTTGAGGCTTCCAAGAAAAC+AGG | 0.393183 | 8_1:-1493639 | Msa1171660:CDS |
| CCCTGCATCTATTCTTCAAA+AGG | 0.394587 | 8_1:+1493316 | None:intergenic |
| GTTAGAGAAACTTCCTGAAA+TGG | 0.395826 | 8_1:-1492922 | Msa1171660:CDS |
| TGTTGTGTGATGCAGGAAAT+GGG | 0.433682 | 8_1:-1492987 | Msa1171660:intron |
| GGCAAACGAGGTTGCTATGA+TGG | 0.435987 | 8_1:-1492961 | Msa1171660:CDS |
| TGTGAACAAACAAGAGAAAT+GGG | 0.437906 | 8_1:-1493598 | Msa1171660:CDS |
| TGTACTCATCGACAACCTTA+AGG | 0.442882 | 8_1:-1493247 | Msa1171660:intron |
| CTGCTACTTGGCAATGGTAA+TGG | 0.457178 | 8_1:+1493447 | None:intergenic |
| ATGATACTAGTACTGCTACT+TGG | 0.472500 | 8_1:+1493435 | None:intergenic |
| AACTCAATGAAATCATCAAA+TGG | 0.477184 | 8_1:+1493864 | None:intergenic |
| AAATCGCTCAAGGCTACAAC+TGG | 0.479818 | 8_1:-1494308 | Msa1171660:CDS |
| GAGTGGATTTGTCGAAGCTT+CGG | 0.481397 | 8_1:-1493535 | Msa1171660:CDS |
| TGATTTCATTGAGTTTGATT+GGG | 0.486276 | 8_1:-1493856 | Msa1171660:CDS |
| AGGTTGAAGCTCAAGGGTTG+AGG | 0.489859 | 8_1:+1492826 | None:intergenic |
| GGGAAGAGTATTGTTGAGAG+TGG | 0.495726 | 8_1:-1493666 | Msa1171660:CDS |
| TGTGATGCAGGAAATGGGTT+TGG | 0.499818 | 8_1:-1492982 | Msa1171660:intron |
| TTGTGAAGAAAGAGGTTGAA+GGG | 0.507686 | 8_1:-1493485 | Msa1171660:CDS |
| TCTCAAAACTACTTTGATCA+AGG | 0.511922 | 8_1:+1493745 | None:intergenic |
| CTATGATGGAGAAGAAGAAA+AGG | 0.520048 | 8_1:-1492947 | Msa1171660:CDS |
| GCTTCGGCGAAAACTGAAAG+TGG | 0.531452 | 8_1:-1493519 | Msa1171660:CDS |
| AAGATCATTGAACCACCCAT+TGG | 0.537266 | 8_1:+1493797 | None:intergenic |
| AGCCTTGAGCGATTTCAGGT+TGG | 0.544838 | 8_1:+1494316 | None:intergenic |
| TTTGTGAAGAAAGAGGTTGA+AGG | 0.545050 | 8_1:-1493486 | Msa1171660:CDS |
| GGTTGAAGCTCAAGGGTTGA+GGG | 0.549829 | 8_1:+1492827 | None:intergenic |
| TGTGAAGAAAGAGGTTGAAG+GGG | 0.555743 | 8_1:-1493484 | Msa1171660:CDS |
| GAAAACTGAAAGTGGGTTTG+TGG | 0.568388 | 8_1:-1493511 | Msa1171660:CDS |
| ATGGGGCATTACACTGACAA+AGG | 0.574265 | 8_1:-1493687 | Msa1171660:CDS |
| TGGGGCATTACACTGACAAA+GGG | 0.577812 | 8_1:-1493686 | Msa1171660:CDS |
| ATGAAGAAATCAAGAAGTTG+AGG | 0.585937 | 8_1:-1492893 | Msa1171660:CDS |
| CCTGCATCTATTCTTCAAAA+GGG | 0.589493 | 8_1:+1493317 | None:intergenic |
| ACATTGAGTGCTGCTGAGAG+TGG | 0.594289 | 8_1:-1493552 | Msa1171660:CDS |
| GTACTAGTATCATAAAGAAG+AGG | 0.598650 | 8_1:-1493425 | Msa1171660:CDS |
| CTTCGGCGAAAACTGAAAGT+GGG | 0.600236 | 8_1:-1493518 | Msa1171660:CDS |
| GGAAATGGGTTTGGCAAACG+AGG | 0.606744 | 8_1:-1492973 | Msa1171660:CDS |
| CTAGTACTGCTACTTGGCAA+TGG | 0.607305 | 8_1:+1493441 | None:intergenic |
| ACCCAACCTGAAATCGCTCA+AGG | 0.612787 | 8_1:-1494318 | Msa1171660:CDS |
| ATGTTGCTTTACCTGAAATG+GGG | 0.616338 | 8_1:-1493704 | Msa1171660:CDS |
| GGTGGCCTCATAGAAAATTG+AGG | 0.616472 | 8_1:-1493278 | Msa1171660:CDS |
| GCAGGGAGCTCAACATCACT+AGG | 0.620032 | 8_1:-1493299 | Msa1171660:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 8_1:-1493345 | Msa1171660:CDS |
| GCACTCAATGTCAATGACAA+TGG | 0.653270 | 8_1:+1493564 | None:intergenic |
| AGGTTGGGTGAAGAACTCCA+TGG | 0.704568 | 8_1:+1494332 | None:intergenic |
| GGGAGCTCAACATCACTAGG+TGG | 0.707852 | 8_1:-1493296 | Msa1171660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAAAGTTAAAAA+GGG | + | chr8_1:1493242-1493261 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAGTTAAAAA+GGG | + | chr8_1:1493242-1493261 | None:intergenic | 10.0% |
| !! | TAAAAATTGAATAAGAACAA+AGG | + | chr8_1:1493041-1493060 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGTTAAAAAGG+GGG | + | chr8_1:1493240-1493259 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAGTTAAAAAG+GGG | + | chr8_1:1493241-1493260 | None:intergenic | 15.0% |
| !! | CACAAAAAAAAAAGTTAAAA+AGG | + | chr8_1:1493243-1493262 | None:intergenic | 15.0% |
| !! | TAAAAATTGAATAAGAACAA+AGG | + | chr8_1:1493041-1493060 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGTTAAAAAGG+GGG | + | chr8_1:1493240-1493259 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAGTTAAAAAG+GGG | + | chr8_1:1493241-1493260 | None:intergenic | 15.0% |
| !! | CACAAAAAAAAAAGTTAAAA+AGG | + | chr8_1:1493243-1493262 | None:intergenic | 15.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | - | chr8_1:1493057-1493076 | Msa1171660:intron | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | - | chr8_1:1493799-1493818 | Msa1171660:CDS | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | + | chr8_1:1493937-1493956 | None:intergenic | 20.0% |
| !!! | ATTTTTTATCAATTGGTCAT+AGG | - | chr8_1:1494143-1494162 | Msa1171660:intron | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | - | chr8_1:1493057-1493076 | Msa1171660:intron | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | - | chr8_1:1493799-1493818 | Msa1171660:CDS | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | + | chr8_1:1493937-1493956 | None:intergenic | 20.0% |
| !!! | ATTTTTTATCAATTGGTCAT+AGG | - | chr8_1:1494143-1494162 | Msa1171660:intron | 20.0% |
| ! | GTAAAAAACAGAACAAGTTA+GGG | + | chr8_1:1493019-1493038 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | - | chr8_1:1493271-1493290 | Msa1171660:CDS | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | + | chr8_1:1493305-1493324 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | - | chr8_1:1493309-1493328 | Msa1171660:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | - | chr8_1:1493310-1493329 | Msa1171660:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | + | chr8_1:1493352-1493371 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | - | chr8_1:1493353-1493372 | Msa1171660:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | - | chr8_1:1493354-1493373 | Msa1171660:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | - | chr8_1:1493771-1493790 | Msa1171660:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | + | chr8_1:1493972-1493991 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | + | chr8_1:1493973-1493992 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | - | chr8_1:1493993-1494012 | Msa1171660:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | + | chr8_1:1493998-1494017 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | + | chr8_1:1494056-1494075 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | + | chr8_1:1494057-1494076 | None:intergenic | 25.0% |
| ! | GTAAAAAACAGAACAAGTTA+GGG | + | chr8_1:1493019-1493038 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | - | chr8_1:1493271-1493290 | Msa1171660:CDS | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | + | chr8_1:1493305-1493324 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | - | chr8_1:1493309-1493328 | Msa1171660:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | - | chr8_1:1493310-1493329 | Msa1171660:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | + | chr8_1:1493352-1493371 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | - | chr8_1:1493353-1493372 | Msa1171660:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | - | chr8_1:1493354-1493373 | Msa1171660:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | - | chr8_1:1493771-1493790 | Msa1171660:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | + | chr8_1:1493972-1493991 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | + | chr8_1:1493973-1493992 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | - | chr8_1:1493993-1494012 | Msa1171660:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | + | chr8_1:1493998-1494017 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | + | chr8_1:1494056-1494075 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | + | chr8_1:1494057-1494076 | None:intergenic | 25.0% |
| AATCATGGTTGAAATGAAAC+TGG | + | chr8_1:1492935-1492954 | None:intergenic | 30.0% | |
| AAAGAATGAACATCGAATCA+TGG | + | chr8_1:1492950-1492969 | None:intergenic | 30.0% | |
| GGTAAAAAACAGAACAAGTT+AGG | + | chr8_1:1493020-1493039 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | + | chr8_1:1493418-1493437 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | + | chr8_1:1493424-1493443 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | + | chr8_1:1493458-1493477 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | + | chr8_1:1493459-1493478 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | - | chr8_1:1493460-1493479 | Msa1171660:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | - | chr8_1:1493461-1493480 | Msa1171660:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | + | chr8_1:1493540-1493559 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | - | chr8_1:1493567-1493586 | Msa1171660:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | - | chr8_1:1493568-1493587 | Msa1171660:CDS | 30.0% | |
| GTACTAGTATCATAAAGAAG+AGG | - | chr8_1:1493741-1493760 | Msa1171660:CDS | 30.0% | |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | + | chr8_1:1493812-1493831 | None:intergenic | 30.0% |
| ! | TTGAAGTACTTAACAATGTG+GGG | + | chr8_1:1493971-1493990 | None:intergenic | 30.0% |
| TGAAACTTGAAACTGTAGTT+TGG | - | chr8_1:1494083-1494102 | Msa1171660:intron | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | - | chr8_1:1494084-1494103 | Msa1171660:intron | 30.0% | |
| ATTCATAACAGCCAACAAAA+AGG | + | chr8_1:1494115-1494134 | None:intergenic | 30.0% | |
| !! | ATTATTTTGTTGTGTGATGC+AGG | - | chr8_1:1494172-1494191 | Msa1171660:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | + | chr8_1:1494260-1494279 | None:intergenic | 30.0% | |
| ATGAAGAAATCAAGAAGTTG+AGG | - | chr8_1:1494273-1494292 | Msa1171660:CDS | 30.0% | |
| AATCATGGTTGAAATGAAAC+TGG | + | chr8_1:1492935-1492954 | None:intergenic | 30.0% | |
| AAAGAATGAACATCGAATCA+TGG | + | chr8_1:1492950-1492969 | None:intergenic | 30.0% | |
| GGTAAAAAACAGAACAAGTT+AGG | + | chr8_1:1493020-1493039 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | + | chr8_1:1493418-1493437 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | + | chr8_1:1493424-1493443 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | + | chr8_1:1493458-1493477 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | + | chr8_1:1493459-1493478 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | - | chr8_1:1493460-1493479 | Msa1171660:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | - | chr8_1:1493461-1493480 | Msa1171660:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | + | chr8_1:1493540-1493559 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | - | chr8_1:1493567-1493586 | Msa1171660:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | - | chr8_1:1493568-1493587 | Msa1171660:CDS | 30.0% | |
| GTACTAGTATCATAAAGAAG+AGG | - | chr8_1:1493741-1493760 | Msa1171660:CDS | 30.0% | |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | + | chr8_1:1493812-1493831 | None:intergenic | 30.0% |
| ! | TTGAAGTACTTAACAATGTG+GGG | + | chr8_1:1493971-1493990 | None:intergenic | 30.0% |
| TGAAACTTGAAACTGTAGTT+TGG | - | chr8_1:1494083-1494102 | Msa1171660:intron | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | - | chr8_1:1494084-1494103 | Msa1171660:intron | 30.0% | |
| ATTCATAACAGCCAACAAAA+AGG | + | chr8_1:1494115-1494134 | None:intergenic | 30.0% | |
| !! | ATTATTTTGTTGTGTGATGC+AGG | - | chr8_1:1494172-1494191 | Msa1171660:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | + | chr8_1:1494260-1494279 | None:intergenic | 30.0% | |
| ATGAAGAAATCAAGAAGTTG+AGG | - | chr8_1:1494273-1494292 | Msa1171660:CDS | 30.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | + | chr8_1:1493004-1493023 | None:intergenic | 35.0% | |
| !! | ATCATTTTTACACCAATGGG+TGG | - | chr8_1:1493357-1493376 | Msa1171660:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | - | chr8_1:1493462-1493481 | Msa1171660:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | - | chr8_1:1493673-1493692 | Msa1171660:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | - | chr8_1:1493680-1493699 | Msa1171660:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | - | chr8_1:1493681-1493700 | Msa1171660:CDS | 35.0% | |
| ATGATACTAGTACTGCTACT+TGG | + | chr8_1:1493734-1493753 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr8_1:1493821-1493840 | Msa1171660:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | + | chr8_1:1493852-1493871 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | - | chr8_1:1493850-1493869 | Msa1171660:CDS | 35.0% |
| ! | AAGCTCCTCAATTTTCTATG+AGG | + | chr8_1:1493896-1493915 | None:intergenic | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | + | chr8_1:1493970-1493989 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | - | chr8_1:1494023-1494042 | Msa1171660:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | - | chr8_1:1494219-1494238 | Msa1171660:intron | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | - | chr8_1:1494244-1494263 | Msa1171660:intron | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | + | chr8_1:1493004-1493023 | None:intergenic | 35.0% | |
| !! | ATCATTTTTACACCAATGGG+TGG | - | chr8_1:1493357-1493376 | Msa1171660:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | - | chr8_1:1493462-1493481 | Msa1171660:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | - | chr8_1:1493673-1493692 | Msa1171660:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | - | chr8_1:1493680-1493699 | Msa1171660:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | - | chr8_1:1493681-1493700 | Msa1171660:CDS | 35.0% | |
| ATGATACTAGTACTGCTACT+TGG | + | chr8_1:1493734-1493753 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr8_1:1493821-1493840 | Msa1171660:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | + | chr8_1:1493852-1493871 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | - | chr8_1:1493850-1493869 | Msa1171660:CDS | 35.0% |
| ! | AAGCTCCTCAATTTTCTATG+AGG | + | chr8_1:1493896-1493915 | None:intergenic | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | + | chr8_1:1493970-1493989 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | - | chr8_1:1494023-1494042 | Msa1171660:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | - | chr8_1:1494219-1494238 | Msa1171660:intron | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | - | chr8_1:1494244-1494263 | Msa1171660:intron | 35.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | + | chr8_1:1492905-1492924 | None:intergenic | 40.0% |
| AGTCTTTCGAGAATGATGTG+TGG | - | chr8_1:1493143-1493162 | Msa1171660:intron | 40.0% | |
| ATCAACCTCGAAAGTCGTAA+CGG | + | chr8_1:1493176-1493195 | None:intergenic | 40.0% | |
| AAGATCATTGAACCACCCAT+TGG | + | chr8_1:1493372-1493391 | None:intergenic | 40.0% | |
| !!! | TGTTGAGAGTGGTTTTGTTG+AGG | - | chr8_1:1493511-1493530 | Msa1171660:CDS | 40.0% |
| GCACTCAATGTCAATGACAA+TGG | + | chr8_1:1493605-1493624 | None:intergenic | 40.0% | |
| ! | GAAAACTGAAAGTGGGTTTG+TGG | - | chr8_1:1493655-1493674 | Msa1171660:CDS | 40.0% |
| TGTGAAGAAAGAGGTTGAAG+GGG | - | chr8_1:1493682-1493701 | Msa1171660:CDS | 40.0% | |
| !! | CCCTTTTGAAGAATAGATGC+AGG | - | chr8_1:1493849-1493868 | Msa1171660:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | + | chr8_1:1493853-1493872 | None:intergenic | 40.0% | |
| TGTACTCATCGACAACCTTA+AGG | - | chr8_1:1493919-1493938 | Msa1171660:intron | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | + | chr8_1:1493969-1493988 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | - | chr8_1:1494029-1494048 | Msa1171660:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | - | chr8_1:1494087-1494106 | Msa1171660:intron | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+TGG | - | chr8_1:1494178-1494197 | Msa1171660:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | - | chr8_1:1494179-1494198 | Msa1171660:intron | 40.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | + | chr8_1:1492905-1492924 | None:intergenic | 40.0% |
| AGTCTTTCGAGAATGATGTG+TGG | - | chr8_1:1493143-1493162 | Msa1171660:intron | 40.0% | |
| ATCAACCTCGAAAGTCGTAA+CGG | + | chr8_1:1493176-1493195 | None:intergenic | 40.0% | |
| AAGATCATTGAACCACCCAT+TGG | + | chr8_1:1493372-1493391 | None:intergenic | 40.0% | |
| !!! | TGTTGAGAGTGGTTTTGTTG+AGG | - | chr8_1:1493511-1493530 | Msa1171660:CDS | 40.0% |
| GCACTCAATGTCAATGACAA+TGG | + | chr8_1:1493605-1493624 | None:intergenic | 40.0% | |
| ! | GAAAACTGAAAGTGGGTTTG+TGG | - | chr8_1:1493655-1493674 | Msa1171660:CDS | 40.0% |
| TGTGAAGAAAGAGGTTGAAG+GGG | - | chr8_1:1493682-1493701 | Msa1171660:CDS | 40.0% | |
| !! | CCCTTTTGAAGAATAGATGC+AGG | - | chr8_1:1493849-1493868 | Msa1171660:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | + | chr8_1:1493853-1493872 | None:intergenic | 40.0% | |
| TGTACTCATCGACAACCTTA+AGG | - | chr8_1:1493919-1493938 | Msa1171660:intron | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | + | chr8_1:1493969-1493988 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | - | chr8_1:1494029-1494048 | Msa1171660:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | - | chr8_1:1494087-1494106 | Msa1171660:intron | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+TGG | - | chr8_1:1494178-1494197 | Msa1171660:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | - | chr8_1:1494179-1494198 | Msa1171660:intron | 40.0% | |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | + | chr8_1:1492857-1492876 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | - | chr8_1:1492858-1492877 | Msa1171660:CDS | 45.0% | |
| TCAGTGTAATGCCCCATTTC+AGG | + | chr8_1:1493476-1493495 | None:intergenic | 45.0% | |
| ! | ATGGGGCATTACACTGACAA+AGG | - | chr8_1:1493479-1493498 | Msa1171660:CDS | 45.0% |
| ! | TGGGGCATTACACTGACAAA+GGG | - | chr8_1:1493480-1493499 | Msa1171660:CDS | 45.0% |
| !! | GGGAAGAGTATTGTTGAGAG+TGG | - | chr8_1:1493500-1493519 | Msa1171660:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | - | chr8_1:1493527-1493546 | Msa1171660:CDS | 45.0% | |
| ! | GAGTGGATTTGTCGAAGCTT+CGG | - | chr8_1:1493631-1493650 | Msa1171660:CDS | 45.0% |
| CTTCGGCGAAAACTGAAAGT+GGG | - | chr8_1:1493648-1493667 | Msa1171660:CDS | 45.0% | |
| ! | CTGCTACTTGGCAATGGTAA+TGG | + | chr8_1:1493722-1493741 | None:intergenic | 45.0% |
| ! | CTAGTACTGCTACTTGGCAA+TGG | + | chr8_1:1493728-1493747 | None:intergenic | 45.0% |
| GGTGGCCTCATAGAAAATTG+AGG | - | chr8_1:1493888-1493907 | Msa1171660:intron | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | + | chr8_1:1494050-1494069 | None:intergenic | 45.0% | |
| ! | TTTGGGTGGAGCCTTTTTGT+TGG | - | chr8_1:1494101-1494120 | Msa1171660:intron | 45.0% |
| ! | TGTGATGCAGGAAATGGGTT+TGG | - | chr8_1:1494184-1494203 | Msa1171660:intron | 45.0% |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | + | chr8_1:1492857-1492876 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | - | chr8_1:1492858-1492877 | Msa1171660:CDS | 45.0% | |
| TCAGTGTAATGCCCCATTTC+AGG | + | chr8_1:1493476-1493495 | None:intergenic | 45.0% | |
| ! | ATGGGGCATTACACTGACAA+AGG | - | chr8_1:1493479-1493498 | Msa1171660:CDS | 45.0% |
| ! | TGGGGCATTACACTGACAAA+GGG | - | chr8_1:1493480-1493499 | Msa1171660:CDS | 45.0% |
| !! | GGGAAGAGTATTGTTGAGAG+TGG | - | chr8_1:1493500-1493519 | Msa1171660:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | - | chr8_1:1493527-1493546 | Msa1171660:CDS | 45.0% | |
| ! | GAGTGGATTTGTCGAAGCTT+CGG | - | chr8_1:1493631-1493650 | Msa1171660:CDS | 45.0% |
| CTTCGGCGAAAACTGAAAGT+GGG | - | chr8_1:1493648-1493667 | Msa1171660:CDS | 45.0% | |
| ! | CTGCTACTTGGCAATGGTAA+TGG | + | chr8_1:1493722-1493741 | None:intergenic | 45.0% |
| ! | CTAGTACTGCTACTTGGCAA+TGG | + | chr8_1:1493728-1493747 | None:intergenic | 45.0% |
| GGTGGCCTCATAGAAAATTG+AGG | - | chr8_1:1493888-1493907 | Msa1171660:intron | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | + | chr8_1:1494050-1494069 | None:intergenic | 45.0% | |
| ! | TTTGGGTGGAGCCTTTTTGT+TGG | - | chr8_1:1494101-1494120 | Msa1171660:intron | 45.0% |
| ! | TGTGATGCAGGAAATGGGTT+TGG | - | chr8_1:1494184-1494203 | Msa1171660:intron | 45.0% |
| !!! | ATAAATAATTTTTTATCAAT+TGG | - | chr8_1:1494136-1494155 | Msa1171660:intron | 5.0% |
| !!! | ATAAATAATTTTTTATCAAT+TGG | - | chr8_1:1494136-1494155 | Msa1171660:intron | 5.0% |
| ACCCAACCTGAAATCGCTCA+AGG | - | chr8_1:1492848-1492867 | Msa1171660:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | + | chr8_1:1492852-1492871 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | + | chr8_1:1492853-1492872 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | - | chr8_1:1493168-1493187 | Msa1171660:intron | 50.0% | |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | - | chr8_1:1493614-1493633 | Msa1171660:CDS | 50.0% |
| GCTTCGGCGAAAACTGAAAG+TGG | - | chr8_1:1493647-1493666 | Msa1171660:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | - | chr8_1:1494193-1494212 | Msa1171660:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | - | chr8_1:1494205-1494224 | Msa1171660:intron | 50.0% | |
| ACCCAACCTGAAATCGCTCA+AGG | - | chr8_1:1492848-1492867 | Msa1171660:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | + | chr8_1:1492852-1492871 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | + | chr8_1:1492853-1492872 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | - | chr8_1:1493168-1493187 | Msa1171660:intron | 50.0% | |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | - | chr8_1:1493614-1493633 | Msa1171660:CDS | 50.0% |
| GCTTCGGCGAAAACTGAAAG+TGG | - | chr8_1:1493647-1493666 | Msa1171660:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | - | chr8_1:1494193-1494212 | Msa1171660:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | - | chr8_1:1494205-1494224 | Msa1171660:intron | 50.0% | |
| GCAGGGAGCTCAACATCACT+AGG | - | chr8_1:1493867-1493886 | Msa1171660:CDS | 55.0% | |
| GGGAGCTCAACATCACTAGG+TGG | - | chr8_1:1493870-1493889 | Msa1171660:CDS | 55.0% | |
| GCAGGGAGCTCAACATCACT+AGG | - | chr8_1:1493867-1493886 | Msa1171660:CDS | 55.0% | |
| GGGAGCTCAACATCACTAGG+TGG | - | chr8_1:1493870-1493889 | Msa1171660:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1492836 | 1494352 | 1492836 | ID=Msa1171660;Name=Msa1171660 |
| chr8_1 | mRNA | 1492836 | 1494352 | 1492836 | ID=Msa1171660-mRNA-1;Parent=Msa1171660;Name=Msa1171660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|298 |
| chr8_1 | exon | 1494270 | 1494352 | 1494270 | ID=Msa1171660-mRNA-1:exon:467;Parent=Msa1171660-mRNA-1 |
| chr8_1 | exon | 1493248 | 1493902 | 1493248 | ID=Msa1171660-mRNA-1:exon:466;Parent=Msa1171660-mRNA-1 |
| chr8_1 | exon | 1492836 | 1492994 | 1492836 | ID=Msa1171660-mRNA-1:exon:465;Parent=Msa1171660-mRNA-1 |
| chr8_1 | CDS | 1494270 | 1494352 | 1494270 | ID=Msa1171660-mRNA-1:cds;Parent=Msa1171660-mRNA-1 |
| chr8_1 | CDS | 1493248 | 1493902 | 1493248 | ID=Msa1171660-mRNA-1:cds;Parent=Msa1171660-mRNA-1 |
| chr8_1 | CDS | 1492836 | 1492994 | 1492836 | ID=Msa1171660-mRNA-1:cds;Parent=Msa1171660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
