AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174650 MtrunA17_Chr4g0059701 92.941 85 6 0 7 91 83 167 5.41e-42 138
Msa1174650 MtrunA17_Chr3g0092621 74.118 85 22 0 1 85 77 161 1.67e-40 131
Msa1174650 MtrunA17_Chr4g0055931 75.362 69 17 0 7 75 94 162 4.12e-35 121
Msa1174650 MtrunA17_Chr6g0488471 77.273 66 15 0 7 72 96 161 5.79e-35 120
Msa1174650 MtrunA17_Chr2g0331031 70.423 71 21 0 7 77 108 178 1.36e-34 120
Msa1174650 MtrunA17_Chr8g0389241 74.242 66 16 1 7 72 104 168 1.24e-32 114
Msa1174650 MtrunA17_Chr5g0415191 85.915 71 10 0 7 77 101 171 7.32e-32 113
Msa1174650 MtrunA17_Chr4g0062741 70.588 68 20 0 7 74 137 204 2.62e-31 111
Msa1174650 MtrunA17_Chr1g0210471 61.250 80 31 0 7 86 123 202 6.55e-31 108
Msa1174650 MtrunA17_Chr1g0162081 69.118 68 21 0 7 74 121 188 2.78e-30 108
Msa1174650 MtrunA17_Chr3g0104071 62.162 74 28 0 7 80 146 219 3.90e-29 105
Msa1174650 MtrunA17_Chr5g0429521 65.278 72 25 0 7 78 131 202 4.39e-29 105
Msa1174650 MtrunA17_Chr7g0241761 54.023 87 40 0 7 93 139 225 2.34e-28 103
Msa1174650 MtrunA17_Chr6g0452791 74.576 59 15 0 8 66 80 138 6.93e-27 96.7
Msa1174650 MtrunA17_Chr5g0436501 56.790 81 33 1 7 85 124 204 6.75e-26 96.7
Msa1174650 MtrunA17_Chr3g0135671 59.722 72 26 1 7 75 90 161 1.65e-25 94.7
Msa1174650 MtrunA17_Chr5g0409841 43.373 83 42 2 10 87 94 176 9.42e-20 79.7
Msa1174650 MtrunA17_Chr5g0409831 44.186 86 42 2 8 87 77 162 1.25e-18 76.6
Msa1174650 MtrunA17_Chr5g0440731 45.122 82 39 2 8 83 105 186 4.56e-18 76.3
Msa1174650 MtrunA17_Chr5g0440741 46.250 80 37 2 10 83 102 181 4.80e-18 76.3
Msa1174650 MtrunA17_Chr8g0365011 47.436 78 27 2 10 73 94 171 5.98e-16 70.5
Msa1174650 MtrunA17_Chr8g0364731 57.627 59 23 1 17 73 10 68 1.14e-15 68.2
Msa1174650 MtrunA17_Chr1g0192061 48.571 70 32 2 10 76 63 131 1.91e-14 65.1
Msa1174650 MtrunA17_Chr3g0113121 45.833 72 32 1 10 74 97 168 8.92e-13 61.2
Msa1174650 MtrunA17_Chr5g0432921 44.000 75 39 2 10 82 115 188 1.18e-12 60.8
Msa1174650 MtrunA17_Chr5g0432941 42.667 75 40 2 10 82 115 188 5.12e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174650 AT5G47390.1 65.517 87 30 0 7 93 95 181 1.11e-38 132
Msa1174650 AT1G49010.1 72.059 68 19 0 7 74 133 200 9.09e-32 113
Msa1174650 AT1G70000.1 73.171 82 22 0 7 88 97 178 2.14e-31 110
Msa1174650 AT1G70000.2 73.171 82 22 0 7 88 97 178 2.14e-31 110
Msa1174650 AT5G04760.1 64.474 76 26 1 7 81 98 173 3.95e-30 106
Msa1174650 AT5G56840.1 66.667 69 22 1 7 74 90 158 6.21e-30 106
Msa1174650 AT5G08520.1 67.647 68 22 0 7 74 117 184 8.69e-30 107
Msa1174650 AT3G16350.1 62.921 89 31 1 7 93 136 224 1.03e-29 108
Msa1174650 AT2G38090.1 62.667 75 28 0 7 81 140 214 1.15e-29 107
Msa1174650 AT1G74840.2 79.747 79 14 1 7 85 95 171 1.37e-29 105
Msa1174650 AT1G19000.2 75.949 79 19 0 7 85 101 179 1.89e-29 106
Msa1174650 AT1G19000.1 75.949 79 19 0 7 85 101 179 1.89e-29 106
Msa1174650 AT1G74840.1 79.747 79 14 1 7 85 95 171 2.06e-29 105
Msa1174650 AT5G58900.1 67.647 68 22 0 7 74 140 207 2.28e-29 106
Msa1174650 AT5G61620.1 63.768 69 25 0 7 75 107 175 2.22e-28 104
Msa1174650 AT5G01200.1 63.235 68 25 0 7 74 145 212 2.47e-26 98.2
Msa1174650 AT5G05790.2 61.765 68 26 0 7 74 130 197 3.39e-25 95.1
Msa1174650 AT5G05790.1 61.765 68 26 0 7 74 130 197 3.39e-25 95.1
Msa1174650 AT3G11280.2 61.765 68 26 0 7 74 126 193 4.51e-25 94.7
Msa1174650 AT3G11280.1 61.765 68 26 0 7 74 126 193 4.51e-25 94.7
Msa1174650 AT4G09450.1 50.633 79 39 0 3 81 86 164 6.95e-23 87.4
Msa1174650 AT3G10580.2 54.930 71 30 1 3 73 90 158 4.35e-22 86.7
Msa1174650 AT3G10580.1 54.930 71 30 1 3 73 90 158 2.08e-21 85.5
Msa1174650 AT5G23650.1 56.716 67 29 0 7 73 119 185 3.61e-20 82.8
Msa1174650 AT3G10590.1 46.154 78 41 1 9 86 112 188 8.74e-19 77.0

Find 22 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTACTTTGTAAGGTAGC+AGG 0.400515 8_1:-5802116 Msa1174650:intron
TTGACCTGTTCTGCCTCCAC+TGG 0.404876 8_1:+5799856 None:intergenic
AATTCCAGTGGAGGCAGAAC+AGG 0.422715 8_1:-5799860 Msa1174650:CDS
TTGGTTGGATTGGAGAAAGT+GGG 0.463944 8_1:-5801674 Msa1174650:CDS
AGAAAGTGGGAAAAGGTGAT+TGG 0.482958 8_1:-5801661 Msa1174650:CDS
TTTGGTTGGATTGGAGAAAG+TGG 0.531455 8_1:-5801675 Msa1174650:CDS
GGTGGTGATATCAAAGAGAC+TGG 0.540239 8_1:+5801529 None:intergenic
AACAGGTCAAGAATCAAGAT+AGG 0.553293 8_1:-5799843 Msa1174650:CDS
GGATTGGAGAAAGTGGGAAA+AGG 0.562648 8_1:-5801668 Msa1174650:CDS
TTGTGCTCTTCCTCAGTCCA+CGG 0.578432 8_1:+5801704 None:intergenic
TATCAAAGAGACTGGATCTA+CGG 0.592657 8_1:+5801537 None:intergenic
TGAATGGGTCAGGGATTCCG+TGG 0.616384 8_1:-5801721 Msa1174650:intron
GTGATTGGAGAGGAATCTCA+AGG 0.619264 8_1:-5801646 Msa1174650:CDS
GTGGGAAAAGGTGATTGGAG+AGG 0.624127 8_1:-5801656 Msa1174650:CDS
GGCGATTGAGATTACTTCGG+CGG 0.629813 8_1:+5801564 None:intergenic
GCATGACTTGCAACATGCGT+AGG 0.635692 8_1:+5801602 None:intergenic
CTTTGATATCACCACCGACA+CGG 0.638033 8_1:-5801522 Msa1174650:intron
GACGGCGATTGAGATTACTT+CGG 0.641222 8_1:+5801561 None:intergenic
TTAGGTATCTGCAATTCCAG+TGG 0.643696 8_1:-5799872 Msa1174650:intron
GGTATCTGCAATTCCAGTGG+AGG 0.652641 8_1:-5799869 Msa1174650:CDS
GTCAGGGATTCCGTGGACTG+AGG 0.660333 8_1:-5801714 Msa1174650:intron
AGAGACTGGATCTACGGCGA+CGG 0.684123 8_1:+5801543 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATATAATAGTTTAA+GGG + chr8_1:5802230-5802249 None:intergenic 10.0%
!! ATATATCTTATAAGATTATA+AGG - chr8_1:5804559-5804578 Msa1174650:intron 10.0%
!!! ATTTTTGTTTTGGTTTTATT+AGG - chr8_1:5799948-5799967 Msa1174650:intron 15.0%
!! ATTCAGTTCAATATAAAATA+TGG - chr8_1:5800032-5800051 Msa1174650:intron 15.0%
!! AATATAACAATCAAAATCAA+TGG + chr8_1:5800289-5800308 None:intergenic 15.0%
!!! ATTTTAACAGATTCATTAAT+TGG - chr8_1:5800524-5800543 Msa1174650:intron 15.0%
!!! TTTTTTTAATTATCGATTAG+TGG - chr8_1:5800939-5800958 Msa1174650:intron 15.0%
!!! TTTTTTAATTATCGATTAGT+GGG - chr8_1:5800940-5800959 Msa1174650:intron 15.0%
!! GATTAATTAATGTTTGAATT+TGG - chr8_1:5800987-5801006 Msa1174650:intron 15.0%
!!! TTTTTATAAGATGTTTATTG+AGG - chr8_1:5801022-5801041 Msa1174650:intron 15.0%
!! TTCGTTACAAAATAAAATAT+CGG - chr8_1:5801253-5801272 Msa1174650:intron 15.0%
!! TAATCATATAAATGAGTATT+TGG + chr8_1:5801442-5801461 None:intergenic 15.0%
!! ATAATTCCAATGTATAATAA+TGG + chr8_1:5801515-5801534 None:intergenic 15.0%
!! CTAAAAAGAAAAAAAAATAC+AGG + chr8_1:5801599-5801618 None:intergenic 15.0%
!! CTAAAAAGAAAAAAAAATAC+AGG + chr8_1:5801599-5801618 None:intergenic 15.0%
!! AAAGAATATAATAGTTTAAG+GGG + chr8_1:5802229-5802248 None:intergenic 15.0%
!! GAAAAGAATATAATAGTTTA+AGG + chr8_1:5802231-5802250 None:intergenic 15.0%
!! CAAAAATAATAAAAATTGGA+TGG + chr8_1:5802395-5802414 None:intergenic 15.0%
!! CTTGCAAAAATAATAAAAAT+TGG + chr8_1:5802399-5802418 None:intergenic 15.0%
!! AACTAATTGAATTCAAATTT+GGG + chr8_1:5803225-5803244 None:intergenic 15.0%
!! TAACTAATTGAATTCAAATT+TGG + chr8_1:5803226-5803245 None:intergenic 15.0%
!!! AATTTTCTCTGTTATTTTTT+TGG - chr8_1:5803289-5803308 Msa1174650:intron 15.0%
!!! ATTTTGTATTATAAACCTAA+AGG + chr8_1:5803639-5803658 None:intergenic 15.0%
!!! TTAAGTCATTCATTTTTAAA+TGG - chr8_1:5803712-5803731 Msa1174650:intron 15.0%
!!! TCTTATTTGAATTTTATTCA+TGG - chr8_1:5804097-5804116 Msa1174650:intron 15.0%
!! AATAAGAAAGAAATAATGTT+TGG + chr8_1:5804150-5804169 None:intergenic 15.0%
!! AGTATTTCTTATAATATGTA+TGG - chr8_1:5804438-5804457 Msa1174650:intron 15.0%
!!! GGATTTGTAGTTAAAATTTT+GGG - chr8_1:5799873-5799892 Msa1174650:intron 20.0%
!!! TCATTTGATCATTTTTGTTT+TGG - chr8_1:5799938-5799957 Msa1174650:intron 20.0%
!!! TGGTTTTATTAGGTAATTTT+TGG - chr8_1:5799958-5799977 Msa1174650:intron 20.0%
!!! ATATTAAACATTGATTACCA+TGG - chr8_1:5800144-5800163 Msa1174650:intron 20.0%
!! AAAAAAAAAAATACCATGTG+TGG + chr8_1:5800608-5800627 None:intergenic 20.0%
!! TTAGCAATCAATTAACATAT+TGG + chr8_1:5800641-5800660 None:intergenic 20.0%
!!! GAATAAAAAAAGCTTTAACT+TGG - chr8_1:5800787-5800806 Msa1174650:intron 20.0%
!! ATTACCTAGATATGAAATTA+TGG + chr8_1:5801327-5801346 None:intergenic 20.0%
!! TATTGAAGCAAAAATATTCA+TGG + chr8_1:5802339-5802358 None:intergenic 20.0%
!! ATTTCAATCAATTCAAACAA+AGG + chr8_1:5802903-5802922 None:intergenic 20.0%
!! TAATCAATAGAGTAGTATTA+TGG - chr8_1:5803247-5803266 Msa1174650:intron 20.0%
!!! CTTTCTTTTTTTTTTTTGTG+TGG - chr8_1:5803423-5803442 Msa1174650:intron 20.0%
!! AAGTGATTCATTTGTTTAAA+TGG - chr8_1:5803599-5803618 Msa1174650:intron 20.0%
!! ATTGATACCATGAAAAATAA+CGG + chr8_1:5803852-5803871 None:intergenic 20.0%
!!! AGATTTTTTTTGAAGAACAT+TGG - chr8_1:5804308-5804327 Msa1174650:intron 20.0%
!! AATACTCTAAATTAAGCATA+AGG + chr8_1:5804424-5804443 None:intergenic 20.0%
!! CTTATAATATTTGATGTATC+TGG - chr8_1:5804640-5804659 Msa1174650:intron 20.0%
!! GGGATTTGTAGTTAAAATTT+TGG - chr8_1:5799872-5799891 Msa1174650:intron 25.0%
!! GGGTAATTTTCTTCATAATA+TGG - chr8_1:5799893-5799912 Msa1174650:intron 25.0%
! TATTTAACAACTTCATCATC+AGG + chr8_1:5800065-5800084 None:intergenic 25.0%
! TATTTAACAACTTCATCATC+AGG + chr8_1:5800065-5800084 None:intergenic 25.0%
!! AAATCAATGGATTCAATTTG+CGG + chr8_1:5800276-5800295 None:intergenic 25.0%
!!! TGTTATATTTTGAATGTTGC+AGG - chr8_1:5800300-5800319 Msa1174650:intron 25.0%
!!! GTTATATTTTGAATGTTGCA+GGG - chr8_1:5800301-5800320 Msa1174650:intron 25.0%
! TAACAGATTCATTAATTGGT+AGG - chr8_1:5800528-5800547 Msa1174650:intron 25.0%
!!! ACTTAAGTTGAATTGTGTAT+AGG - chr8_1:5801049-5801068 Msa1174650:intron 25.0%
! AAAAAATCACACAAACACAA+AGG + chr8_1:5801216-5801235 None:intergenic 25.0%
! TAAGCCATAATTTCATATCT+AGG - chr8_1:5801320-5801339 Msa1174650:intron 25.0%
!!! TTTTTTCTTCATATTTGACG+AGG - chr8_1:5801390-5801409 Msa1174650:intron 25.0%
! ATCAAGCCATTATTATACAT+TGG - chr8_1:5801506-5801525 Msa1174650:intron 25.0%
! TTGAGTAGTGTGTATAATAA+TGG + chr8_1:5801549-5801568 None:intergenic 25.0%
!! ACATTCGATTATGTATTTTC+CGG - chr8_1:5801810-5801829 Msa1174650:intron 25.0%
! CAACATTAATCCAATATATC+TGG - chr8_1:5801854-5801873 Msa1174650:intron 25.0%
! AAAAGAATGATCTTGAATAG+AGG + chr8_1:5801903-5801922 None:intergenic 25.0%
!! TTGTTATTAACAGCATAAAG+TGG - chr8_1:5801995-5802014 Msa1174650:intron 25.0%
! CTTCAATATTAATTGTGTCT+TGG - chr8_1:5802351-5802370 Msa1174650:intron 25.0%
! AATATCTACTTAAAATCCTG+AGG + chr8_1:5802752-5802771 None:intergenic 25.0%
!! TCTCACATTTAAATGGTTTT+TGG - chr8_1:5802808-5802827 Msa1174650:intron 25.0%
!!! TGTTATCGATTTTCTTTGAA+TGG - chr8_1:5802937-5802956 Msa1174650:intron 25.0%
!!! GTTATCGATTTTCTTTGAAT+GGG - chr8_1:5802938-5802957 Msa1174650:intron 25.0%
!!! TATTAAGACTTTTGCCATTT+AGG - chr8_1:5803344-5803363 Msa1174650:intron 25.0%
! CAATAGTTCAAATTCCTAAA+TGG + chr8_1:5803361-5803380 None:intergenic 25.0%
! AGGAATTTGAACTATTGTAA+AGG - chr8_1:5803364-5803383 Msa1174650:intron 25.0%
!!! CATGGATACTTTCTATTTTT+TGG - chr8_1:5803506-5803525 Msa1174650:intron 25.0%
! TTACAAATTCAATGTAGCTA+GGG + chr8_1:5803678-5803697 None:intergenic 25.0%
! AAAGCTACAAATTCAACTTA+CGG + chr8_1:5803765-5803784 None:intergenic 25.0%
! AAGTAAAGCCTTAAATCATT+TGG - chr8_1:5803907-5803926 Msa1174650:intron 25.0%
! TGGATTATGTATACTTTGAA+CGG - chr8_1:5803964-5803983 Msa1174650:intron 25.0%
!!! TGTATGGTTTTTTTAATTGC+AGG - chr8_1:5804454-5804473 Msa1174650:intron 25.0%
! AACAACTTTGTGTATATGTT+AGG - chr8_1:5804784-5804803 Msa1174650:intron 25.0%
CATCAAAGTGGAACAAAATT+CGG + chr8_1:5799853-5799872 None:intergenic 30.0%
! GAATTTTGTTCCACTTTGAT+GGG - chr8_1:5799852-5799871 Msa1174650:CDS 30.0%
TCAACAACATCATCTATCAA+TGG + chr8_1:5800722-5800741 None:intergenic 30.0%
GTCATTGATGAATGAGATAT+AGG - chr8_1:5800763-5800782 Msa1174650:intron 30.0%
! GTGTTTCACATTGGTTATTA+CGG + chr8_1:5800869-5800888 None:intergenic 30.0%
!! AGAAGATTGTTGATTCTGTT+GGG - chr8_1:5801111-5801130 Msa1174650:intron 30.0%
AATGTAGTAGTACCTTTGTA+TGG + chr8_1:5801183-5801202 None:intergenic 30.0%
!! ATACAAAGGTACTACTACAT+TGG - chr8_1:5801182-5801201 Msa1174650:intron 30.0%
TTCATATCTAGGTAATCAAC+AGG - chr8_1:5801331-5801350 Msa1174650:intron 30.0%
GGAAAATACATAATCGAATG+TGG + chr8_1:5801811-5801830 None:intergenic 30.0%
TGGAATCAAATGAAGTTGAA+TGG - chr8_1:5802015-5802034 Msa1174650:intron 30.0%
AATCAAATGAAGTTGAATGG+TGG - chr8_1:5802018-5802037 Msa1174650:intron 30.0%
ATCAAATGAAGTTGAATGGT+GGG - chr8_1:5802019-5802038 Msa1174650:intron 30.0%
ATCAAATGAAGTTGAATGGT+GGG - chr8_1:5802019-5802038 Msa1174650:intron 30.0%
ATAATAGTTTAAGGGGAATG+TGG + chr8_1:5802222-5802241 None:intergenic 30.0%
TTTAATCTTTCATCTCTAGC+AGG - chr8_1:5802433-5802452 Msa1174650:intron 30.0%
!!! ACTCAGCAACAAACATTTTT+TGG + chr8_1:5802484-5802503 None:intergenic 30.0%
CAAATTCACAAAAAACACAC+AGG + chr8_1:5802538-5802557 None:intergenic 30.0%
! GAATTTGCTTCTACTTTGTA+AGG - chr8_1:5802551-5802570 Msa1174650:intron 30.0%
AATACCGCACAATTCAAAAT+TGG + chr8_1:5802604-5802623 None:intergenic 30.0%
TTGTGCGGTATTATTCATTT+AGG - chr8_1:5802612-5802631 Msa1174650:intron 30.0%
TGTGCGGTATTATTCATTTA+GGG - chr8_1:5802613-5802632 Msa1174650:intron 30.0%
ACATGTGCACAAACTTTAAT+TGG - chr8_1:5802667-5802686 Msa1174650:intron 30.0%
ATAACTACATCTTATGCAAG+AGG - chr8_1:5802691-5802710 Msa1174650:intron 30.0%
CTACATGTCTCACATTTAAA+TGG - chr8_1:5802801-5802820 Msa1174650:intron 30.0%
!!! TTTTTTGTGTGGAAATCCTT+TGG - chr8_1:5803434-5803453 Msa1174650:intron 30.0%
GATTTCTTTACAACTACCAA+AGG + chr8_1:5803453-5803472 None:intergenic 30.0%
CGTTTACTCTATCAAATTCA+TGG - chr8_1:5803488-5803507 Msa1174650:intron 30.0%
ATCTTCTAATTATGCAAACC+AGG - chr8_1:5803534-5803553 Msa1174650:intron 30.0%
TCACTTAACATATAACACCT+AGG + chr8_1:5803585-5803604 None:intergenic 30.0%
GTTCATTATGTTAGTCCTTT+AGG - chr8_1:5803621-5803640 Msa1174650:intron 30.0%
CTTACAAATTCAATGTAGCT+AGG + chr8_1:5803679-5803698 None:intergenic 30.0%
! TTTGTACCTTTTACTACTGT+TGG - chr8_1:5803807-5803826 Msa1174650:intron 30.0%
!!! ATTAGTGCCGTTATTTTTCA+TGG - chr8_1:5803842-5803861 Msa1174650:intron 30.0%
TAAAGCCTTAAATCATTTGG+TGG - chr8_1:5803910-5803929 Msa1174650:intron 30.0%
ATGTACTAATGAGCTATCAA+AGG + chr8_1:5804066-5804085 None:intergenic 30.0%
AGCTCATTAGTACATATTGT+TGG - chr8_1:5804071-5804090 Msa1174650:intron 30.0%
TCTGTTTAGAAAGCTATTTG+TGG - chr8_1:5804369-5804388 Msa1174650:intron 30.0%
! TAGTGCTTTTAAATCACTGT+TGG + chr8_1:5804537-5804556 None:intergenic 30.0%
ATGCATTTCAAGAGTTTACT+CGG - chr8_1:5804600-5804619 Msa1174650:intron 30.0%
! CGAATTTTGTTCCACTTTGA+TGG - chr8_1:5799851-5799870 Msa1174650:CDS 35.0%
AACTACAAATCCCATCAAAG+TGG + chr8_1:5799865-5799884 None:intergenic 35.0%
AATGGAGACGATTGAAGATA+TGG + chr8_1:5800401-5800420 None:intergenic 35.0%
TTCGAATTGAAACCAGCAAA+TGG + chr8_1:5800419-5800438 None:intergenic 35.0%
AATTCTCCGAAGAACAAGTT+TGG - chr8_1:5800437-5800456 Msa1174650:intron 35.0%
TGATTTACTAGAACCACACA+TGG - chr8_1:5800592-5800611 Msa1174650:intron 35.0%
! TTTCACATTGGTTATTACGG+TGG + chr8_1:5800866-5800885 None:intergenic 35.0%
!! GAGAAGATTGTTGATTCTGT+TGG - chr8_1:5801110-5801129 Msa1174650:intron 35.0%
!! GAAGATTGTTGATTCTGTTG+GGG - chr8_1:5801112-5801131 Msa1174650:intron 35.0%
AAGCTTGATGCTTTGGTTAT+GGG - chr8_1:5801140-5801159 Msa1174650:intron 35.0%
TTTGGCACAAAGTTCAGATT+AGG + chr8_1:5801424-5801443 None:intergenic 35.0%
TAACAACAACATATTGTCGC+CGG + chr8_1:5801832-5801851 None:intergenic 35.0%
GAATGATCTTGAATAGAGGA+GGG + chr8_1:5801899-5801918 None:intergenic 35.0%
AGAATGATCTTGAATAGAGG+AGG + chr8_1:5801900-5801919 None:intergenic 35.0%
TGGGATCAAATGAAGTTGAA+TGG - chr8_1:5802038-5802057 Msa1174650:intron 35.0%
GATCAAATGAAGTTGAATGG+TGG - chr8_1:5802041-5802060 Msa1174650:intron 35.0%
TCAAATGAAGTTGAATGGTG+GGG - chr8_1:5802020-5802039 Msa1174650:intron 35.0%
AGCAGCAAAAAAGAGGTAAT+GGG - chr8_1:5802069-5802088 Msa1174650:intron 35.0%
!!! GTGGTCTATTGATTCTTTTC+GGG + chr8_1:5802136-5802155 None:intergenic 35.0%
!!! GGTGGTCTATTGATTCTTTT+CGG + chr8_1:5802137-5802156 None:intergenic 35.0%
GATGGAGCAAATTGAAACAA+AGG + chr8_1:5802377-5802396 None:intergenic 35.0%
ACAAAAAACACACAGGATAG+GGG + chr8_1:5802531-5802550 None:intergenic 35.0%
CACAAAAAACACACAGGATA+GGG + chr8_1:5802532-5802551 None:intergenic 35.0%
TCACAAAAAACACACAGGAT+AGG + chr8_1:5802533-5802552 None:intergenic 35.0%
!! TAGCAGGTTTGTTACTTACA+AGG - chr8_1:5802574-5802593 Msa1174650:intron 35.0%
!! AGGTTTGTTACTTACAAGGA+TGG - chr8_1:5802578-5802597 Msa1174650:intron 35.0%
! ATGGCCAATTTTGAATTGTG+CGG - chr8_1:5802597-5802616 Msa1174650:intron 35.0%
GTGCGGTATTATTCATTTAG+GGG - chr8_1:5802614-5802633 Msa1174650:intron 35.0%
TCACTTGGATTGAGCATTAA+AGG - chr8_1:5802719-5802738 Msa1174650:intron 35.0%
CATTAAAGGTTGTTTACCTC+AGG - chr8_1:5802733-5802752 Msa1174650:intron 35.0%
! GATTTTCTTTGAATGGGTCA+GGG - chr8_1:5802944-5802963 Msa1174650:intron 35.0%
!!! CAAGATGTTTTTGGTTGGAT+TGG - chr8_1:5802990-5803009 Msa1174650:intron 35.0%
TATCAAAGAGACTGGATCTA+CGG + chr8_1:5803140-5803159 None:intergenic 35.0%
TGAACCTTGAATGTATACCT+AGG - chr8_1:5803565-5803584 Msa1174650:intron 35.0%
AACACCTAGGTATACATTCA+AGG + chr8_1:5803572-5803591 None:intergenic 35.0%
AATTCAACTTACGGTGAAGT+TGG + chr8_1:5803756-5803775 None:intergenic 35.0%
TACGAACCAACAGTAGTAAA+AGG + chr8_1:5803816-5803835 None:intergenic 35.0%
TCCATTAATGACATGTAGCA+TGG - chr8_1:5803944-5803963 Msa1174650:intron 35.0%
TCCATGCTACATGTCATTAA+TGG + chr8_1:5803948-5803967 None:intergenic 35.0%
!! AAGGTACTATTTGGTGCATA+AGG + chr8_1:5804047-5804066 None:intergenic 35.0%
!! GAGCTATCAAAGGTACTATT+TGG + chr8_1:5804056-5804075 None:intergenic 35.0%
AACAGGTCAAGAATCAAGAT+AGG - chr8_1:5804831-5804850 Msa1174650:intron 35.0%
CATCATCAGGTTAGAAACCA+TGG + chr8_1:5800052-5800071 None:intergenic 40.0%
TTTGAATGTTGCAGGGAACA+TGG - chr8_1:5800308-5800327 Msa1174650:intron 40.0%
! CCTGAACCAAACTTGTTCTT+CGG + chr8_1:5800446-5800465 None:intergenic 40.0%
! AGAACAAGTTTGGTTCAGGA+CGG - chr8_1:5800447-5800466 Msa1174650:intron 40.0%
GCAATGGAAGAAGATTGTAG+AGG - chr8_1:5800469-5800488 Msa1174650:intron 40.0%
AGGCGAAAGAAGACGAAAAT+TGG + chr8_1:5800824-5800843 None:intergenic 40.0%
TCAGCATCAGTGTTTCACAT+TGG + chr8_1:5800878-5800897 None:intergenic 40.0%
GAATTGTGTATAGGTGACTG+TGG - chr8_1:5801058-5801077 Msa1174650:intron 40.0%
! GGATTTGAAGCTTGATGCTT+TGG - chr8_1:5801133-5801152 Msa1174650:intron 40.0%
GAAGCTTGATGCTTTGGTTA+TGG - chr8_1:5801139-5801158 Msa1174650:intron 40.0%
AAGAGTAATGCAACCGTACT+GGG + chr8_1:5801297-5801316 None:intergenic 40.0%
AAAGAGTAATGCAACCGTAC+TGG + chr8_1:5801298-5801317 None:intergenic 40.0%
GAGCAGCAAAAAAGAGGTAA+TGG - chr8_1:5802068-5802087 Msa1174650:intron 40.0%
GCAGCAAAAAAGAGGTAATG+GGG - chr8_1:5802070-5802089 Msa1174650:intron 40.0%
!!! TATTGATTCTTTTCGGGCTG+CGG + chr8_1:5802130-5802149 None:intergenic 40.0%
CATGTCATCAGAATCGTTCA+CGG + chr8_1:5802158-5802177 None:intergenic 40.0%
ACGATTCTGATGACATGGAA+TGG - chr8_1:5802161-5802180 Msa1174650:intron 40.0%
CAAAAAACACACAGGATAGG+GGG + chr8_1:5802530-5802549 None:intergenic 40.0%
CTTCTACTTTGTAAGGTAGC+AGG - chr8_1:5802558-5802577 Msa1174650:intron 40.0%
ATGCAAGAGGAACTTTCACT+TGG - chr8_1:5802704-5802723 Msa1174650:intron 40.0%
CATTCTCTCTGAGCAAACAA+TGG - chr8_1:5802778-5802797 Msa1174650:intron 40.0%
! CGATTTTCTTTGAATGGGTC+AGG - chr8_1:5802943-5802962 Msa1174650:intron 40.0%
!! GGAAGAGCACAAGATGTTTT+TGG - chr8_1:5802981-5803000 Msa1174650:intron 40.0%
!!! GAGCACAAGATGTTTTTGGT+TGG - chr8_1:5802985-5803004 Msa1174650:intron 40.0%
! TTTGGTTGGATTGGAGAAAG+TGG - chr8_1:5802999-5803018 Msa1174650:intron 40.0%
! TTGGTTGGATTGGAGAAAGT+GGG - chr8_1:5803000-5803019 Msa1174650:intron 40.0%
AGAAAGTGGGAAAAGGTGAT+TGG - chr8_1:5803013-5803032 Msa1174650:intron 40.0%
!!! CACCGACACGGTAATTTTTT+CGG - chr8_1:5803164-5803183 Msa1174650:intron 40.0%
TGCCGAAAAAATTACCGTGT+CGG + chr8_1:5803169-5803188 None:intergenic 40.0%
TGTAGCTAGGGACTTTCATT+AGG + chr8_1:5803666-5803685 None:intergenic 40.0%
GCAGTCCACCAAATGATTTA+AGG + chr8_1:5803918-5803937 None:intergenic 40.0%
GAATGAAGATCCTGCAAACT+TGG - chr8_1:5804008-5804027 Msa1174650:intron 40.0%
TCAAATCCAACCAAGTTTGC+AGG + chr8_1:5804021-5804040 None:intergenic 40.0%
! CTGTTATCAAAAGTGTGCGA+AGG + chr8_1:5804126-5804145 None:intergenic 40.0%
TGACTTCAAATCTAGCTGCA+TGG - chr8_1:5804233-5804252 Msa1174650:intron 40.0%
TTCAAATCTAGCTGCATGGT+TGG - chr8_1:5804237-5804256 Msa1174650:intron 40.0%
TCAAATCTAGCTGCATGGTT+GGG - chr8_1:5804238-5804257 Msa1174650:intron 40.0%
TCCATACTAACACAACTTGC+GGG + chr8_1:5804505-5804524 None:intergenic 40.0%
GTCCATACTAACACAACTTG+CGG + chr8_1:5804506-5804525 None:intergenic 40.0%
TTAGGTATCTGCAATTCCAG+TGG - chr8_1:5804802-5804821 Msa1174650:intron 40.0%
CTTCAATCGTCTCCATTTGC+TGG - chr8_1:5800404-5800423 Msa1174650:intron 45.0%
! CCGAAGAACAAGTTTGGTTC+AGG - chr8_1:5800443-5800462 Msa1174650:intron 45.0%
! TGTGGTAGCGAAGGTATACT+AGG - chr8_1:5801076-5801095 Msa1174650:intron 45.0%
! GTGGTAGCGAAGGTATACTA+GGG - chr8_1:5801077-5801096 Msa1174650:intron 45.0%
GTTATGGGTAGCAGAGGTTT+GGG - chr8_1:5801155-5801174 Msa1174650:intron 45.0%
CTTGCAGAACTATCCCAGTA+CGG - chr8_1:5801281-5801300 Msa1174650:intron 45.0%
GAAGAAAGTTGACGCAGAGA+TGG + chr8_1:5801787-5801806 None:intergenic 45.0%
CGTGAACGATTCTGATGACA+TGG - chr8_1:5802156-5802175 Msa1174650:intron 45.0%
!! TGACATGGAATGGTGTTGCT+CGG - chr8_1:5802171-5802190 Msa1174650:intron 45.0%
TTACATGATCGGGGGATTGA+TGG + chr8_1:5802198-5802217 None:intergenic 45.0%
AATGTGGCTTACATGATCGG+GGG + chr8_1:5802206-5802225 None:intergenic 45.0%
GAATGTGGCTTACATGATCG+GGG + chr8_1:5802207-5802226 None:intergenic 45.0%
GGAATGTGGCTTACATGATC+GGG + chr8_1:5802208-5802227 None:intergenic 45.0%
GGGAATGTGGCTTACATGAT+CGG + chr8_1:5802209-5802228 None:intergenic 45.0%
GGATTGGAGAAAGTGGGAAA+AGG - chr8_1:5803006-5803025 Msa1174650:intron 45.0%
GTGATTGGAGAGGAATCTCA+AGG - chr8_1:5803028-5803047 Msa1174650:intron 45.0%
GACGGCGATTGAGATTACTT+CGG + chr8_1:5803116-5803135 None:intergenic 45.0%
GGTGGTGATATCAAAGAGAC+TGG + chr8_1:5803148-5803167 None:intergenic 45.0%
CTTTGATATCACCACCGACA+CGG - chr8_1:5803152-5803171 Msa1174650:intron 45.0%
CGAAAAAATTACCGTGTCGG+TGG + chr8_1:5803166-5803185 None:intergenic 45.0%
TCAAGGTTCATACGTAGTCC+TGG + chr8_1:5803555-5803574 None:intergenic 45.0%
GAAGATCCTGCAAACTTGGT+TGG - chr8_1:5804012-5804031 Msa1174650:intron 45.0%
TGTTGCAGGGAACATGGATC+AGG - chr8_1:5800314-5800333 Msa1174650:intron 50.0%
! AGTTTGGTTCAGGACGGCAA+TGG - chr8_1:5800453-5800472 Msa1174650:intron 50.0%
GTCGAAGAGGACAAAGTGAC+AGG + chr8_1:5800844-5800863 None:intergenic 50.0%
GGTTATTACGGTGGTCGAAG+AGG + chr8_1:5800857-5800876 None:intergenic 50.0%
! ATAGGTGACTGTGGTAGCGA+AGG - chr8_1:5801067-5801086 Msa1174650:intron 50.0%
GCTTTGGTTATGGGTAGCAG+AGG - chr8_1:5801149-5801168 Msa1174650:intron 50.0%
GGTTATGGGTAGCAGAGGTT+TGG - chr8_1:5801154-5801173 Msa1174650:intron 50.0%
! GAGGTTTGGGTGCCATACAA+AGG - chr8_1:5801168-5801187 Msa1174650:intron 50.0%
TGCTGGTGCGCCAGATATAT+TGG + chr8_1:5801867-5801886 None:intergenic 50.0%
!! AGGTAATGGGGTTCAAAGCC+AGG - chr8_1:5802082-5802101 Msa1174650:intron 50.0%
GTCATCAGAATCGTTCACGG+TGG + chr8_1:5802155-5802174 None:intergenic 50.0%
GGCTGAGAAGAGACTGCTAT+TGG - chr8_1:5802635-5802654 Msa1174650:intron 50.0%
TTGTGCTCTTCCTCAGTCCA+CGG + chr8_1:5802973-5802992 None:intergenic 50.0%
GTGGGAAAAGGTGATTGGAG+AGG - chr8_1:5803018-5803037 Msa1174650:intron 50.0%
! GCATGACTTGCAACATGCGT+AGG + chr8_1:5803075-5803094 None:intergenic 50.0%
GGCGATTGAGATTACTTCGG+CGG + chr8_1:5803113-5803132 None:intergenic 50.0%
GCCCGCAAGTTGTGTTAGTA+TGG - chr8_1:5804501-5804520 Msa1174650:intron 50.0%
GGTATCTGCAATTCCAGTGG+AGG - chr8_1:5804805-5804824 Msa1174650:intron 50.0%
AATTCCAGTGGAGGCAGAAC+AGG - chr8_1:5804814-5804833 Msa1174650:intron 50.0%
GAGGAGGGACACATTGTTGC+TGG + chr8_1:5801884-5801903 None:intergenic 55.0%
GGGGCTGAGCAGCAAAAAAG+AGG - chr8_1:5802062-5802081 Msa1174650:intron 55.0%
TGGGGTTCAAAGCCAGGAAG+CGG - chr8_1:5802088-5802107 Msa1174650:intron 55.0%
TGAATGGGTCAGGGATTCCG+TGG - chr8_1:5802953-5802972 Msa1174650:intron 55.0%
AGAGACTGGATCTACGGCGA+CGG + chr8_1:5803134-5803153 None:intergenic 55.0%
TTGACCTGTTCTGCCTCCAC+TGG + chr8_1:5804821-5804840 None:intergenic 55.0%
ATGGCAGCACAACCGCTTCC+TGG + chr8_1:5802103-5802122 None:intergenic 60.0%
!! CTTTTCGGGCTGCGGTGAGA+TGG + chr8_1:5802122-5802141 None:intergenic 60.0%
! GTCAGGGATTCCGTGGACTG+AGG - chr8_1:5802960-5802979 Msa1174650:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5799837 5804859 5799837 ID=Msa1174650;Name=Msa1174650
chr8_1 mRNA 5799837 5804859 5799837 ID=Msa1174650-mRNA-1;Parent=Msa1174650;Name=Msa1174650-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.2|1|1|5|0|93
chr8_1 exon 5804856 5804859 5804856 ID=Msa1174650-mRNA-1:exon:1969;Parent=Msa1174650-mRNA-1
chr8_1 exon 5802237 5802244 5802237 ID=Msa1174650-mRNA-1:exon:1968;Parent=Msa1174650-mRNA-1
chr8_1 exon 5802117 5802123 5802117 ID=Msa1174650-mRNA-1:exon:1967;Parent=Msa1174650-mRNA-1
chr8_1 exon 5801523 5801731 5801523 ID=Msa1174650-mRNA-1:exon:1966;Parent=Msa1174650-mRNA-1
chr8_1 exon 5799837 5799890 5799837 ID=Msa1174650-mRNA-1:exon:1965;Parent=Msa1174650-mRNA-1
chr8_1 CDS 5804856 5804859 5804856 ID=Msa1174650-mRNA-1:cds;Parent=Msa1174650-mRNA-1
chr8_1 CDS 5802237 5802244 5802237 ID=Msa1174650-mRNA-1:cds;Parent=Msa1174650-mRNA-1
chr8_1 CDS 5802117 5802123 5802117 ID=Msa1174650-mRNA-1:cds;Parent=Msa1174650-mRNA-1
chr8_1 CDS 5801523 5801731 5801523 ID=Msa1174650-mRNA-1:cds;Parent=Msa1174650-mRNA-1
chr8_1 CDS 5799837 5799890 5799837 ID=Msa1174650-mRNA-1:cds;Parent=Msa1174650-mRNA-1
Gene Sequence

>Msa1174650

ATGGCAGGCAATGTAGCAGGGATTCCGTGGACTGAGGAAGAGCACAAGATGTTTTTGGTTGGATTGGAGAAAGTGGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACGCCTACGCATGTTGCAAGTCATGCTCATAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGGTATCTGCAATTCCAGTGGAGGCAGAACAGGTCAAGAATCAAGATAGGCCTTGA

Protein sequence

>Msa1174650

MAGNVAGIPWTEEEHKMFLVGLEKVGKGDWRGISRNYVKTRTPTHVASHAHKYFLRRSNLNRRRRRSSLFDITTDTVSAIPVEAEQVKNQDRP*