Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175160 | XP_003625944.1 | 85.260 | 346 | 40 | 3 | 35 | 369 | 42 | 387 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175160 | sp|Q8GX84|C3H1_ARATH | 68.790 | 314 | 92 | 4 | 60 | 369 | 25 | 336 | 1.38e-156 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1175160 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175160 | MtrunA17_Chr7g0269781 | 88.991 | 327 | 31 | 2 | 48 | 369 | 1 | 327 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175160 | AT1G01350.1 | 68.790 | 314 | 92 | 4 | 60 | 369 | 25 | 336 | 1.40e-157 | 446 |
| Msa1175160 | AT5G06420.1 | 67.722 | 316 | 93 | 4 | 58 | 369 | 61 | 371 | 3.28e-156 | 444 |
| Msa1175160 | AT5G06420.2 | 67.722 | 316 | 93 | 4 | 58 | 369 | 61 | 371 | 3.28e-156 | 444 |
| Msa1175160 | AT4G01023.1 | 66.667 | 57 | 19 | 0 | 302 | 358 | 78 | 134 | 2.29e-26 | 105 |
| Msa1175160 | AT4G01023.3 | 66.667 | 57 | 19 | 0 | 302 | 358 | 97 | 153 | 5.73e-26 | 105 |
| Msa1175160 | AT4G01023.2 | 66.667 | 57 | 19 | 0 | 302 | 358 | 97 | 153 | 7.59e-26 | 104 |
Find 84 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATCGTTTAATATTTA+TGG | 0.042376 | 8_1:-6442934 | Msa1175160:CDS |
| ACATGTGCTTTGAACTTAAA+TGG | 0.105377 | 8_1:+6440671 | None:intergenic |
| CAACACATCTTCTCCGATTC+AGG | 0.223403 | 8_1:-6442281 | Msa1175160:intron |
| TAAATATTAAACGATATTAA+AGG | 0.235924 | 8_1:+6442937 | None:intergenic |
| AAAATGAAAGCTAGGTTTCT+TGG | 0.236965 | 8_1:+6441563 | None:intergenic |
| CATAAAGCTTCAGCCACTTC+TGG | 0.246245 | 8_1:-6442329 | Msa1175160:intron |
| GTGGGTCACACGGTCCTCTT+CGG | 0.314266 | 8_1:-6441299 | Msa1175160:CDS |
| TTGGTGATTTGCAGGAGATT+TGG | 0.316183 | 8_1:+6441910 | None:intergenic |
| CTCATATTCTTCTTATTAAG+AGG | 0.321707 | 8_1:+6441735 | None:intergenic |
| TGTTCAGTTTGGTGATTTGC+AGG | 0.323435 | 8_1:+6441902 | None:intergenic |
| GATCGAGGTGATTACAAATC+TGG | 0.331028 | 8_1:-6441165 | Msa1175160:CDS |
| TATACATACCTTGTTCAGTT+TGG | 0.352276 | 8_1:+6441891 | None:intergenic |
| TGGGTCACACGGTCCTCTTC+GGG | 0.377787 | 8_1:-6441298 | Msa1175160:CDS |
| GGATATATGCAAGGATTATA+AGG | 0.382708 | 8_1:-6441232 | Msa1175160:CDS |
| TGCAAGGATTATAAGGAAAC+TGG | 0.390916 | 8_1:-6441225 | Msa1175160:CDS |
| CATGTGCTTTGAACTTAAAT+GGG | 0.392797 | 8_1:+6440672 | None:intergenic |
| ATCGTTTAATATTTATGGAC+AGG | 0.407708 | 8_1:-6442929 | Msa1175160:intron |
| TTATAATCCTTGCATATATC+CGG | 0.408034 | 8_1:+6441234 | None:intergenic |
| GGTTTCTTGGATTCTTCGTT+CGG | 0.408554 | 8_1:+6441576 | None:intergenic |
| GTCGTGGCAGCTTATTAGTA+TGG | 0.411969 | 8_1:-6441945 | Msa1175160:CDS |
| TAGCAAAGCAACCGCAACTT+TGG | 0.426930 | 8_1:-6441508 | Msa1175160:CDS |
| CTTGCTTAAGAGCTCTTTCA+CGG | 0.431115 | 8_1:+6441448 | None:intergenic |
| CTGTGAGCATTGTGCATTGA+AGG | 0.436410 | 8_1:-6440959 | Msa1175160:intron |
| TGCTTGCACTTGGTTGAGAC+AGG | 0.443250 | 8_1:+6440988 | None:intergenic |
| GAAACCTAACTAACCTGAAT+CGG | 0.447164 | 8_1:+6442268 | None:intergenic |
| AAAATAGTCATTGATCGTAC+TGG | 0.453777 | 8_1:+6440734 | None:intergenic |
| GAAGACTCAAAATGAAAGCT+AGG | 0.455285 | 8_1:+6441555 | None:intergenic |
| GAAACTGGTTACTGTGGGTA+TGG | 0.457746 | 8_1:-6441210 | Msa1175160:CDS |
| CATTTGTAGAAATCCATTTG+TGG | 0.461066 | 8_1:-6441013 | Msa1175160:CDS |
| GAAAGCAAGGAGGATGAGAT+TGG | 0.475774 | 8_1:-6441109 | Msa1175160:CDS |
| CAATAATTACACAGATCATA+AGG | 0.476447 | 8_1:-6441364 | Msa1175160:CDS |
| GTGGCAGATGGAGAAGGAAT+GGG | 0.495492 | 8_1:-6441142 | Msa1175160:CDS |
| GCAAACAATTGCCAGTGAAA+AGG | 0.499122 | 8_1:-6441325 | Msa1175160:CDS |
| AAACTGGTTACTGTGGGTAT+GGG | 0.503271 | 8_1:-6441209 | Msa1175160:CDS |
| ATGTGTTGGCCGCGGCAACT+TGG | 0.504552 | 8_1:+6442296 | None:intergenic |
| GTTGAGACAGGATCCACAAA+TGG | 0.505798 | 8_1:+6441000 | None:intergenic |
| CTACAAATGAAACACGCAAA+TGG | 0.511076 | 8_1:+6441027 | None:intergenic |
| ATCGAGGTGATTACAAATCT+GGG | 0.520829 | 8_1:-6441164 | Msa1175160:CDS |
| TATTAAAGGATTATACTTGA+CGG | 0.522898 | 8_1:+6442951 | None:intergenic |
| AGCAAGATTTGATTATCAGC+CGG | 0.527438 | 8_1:-6441253 | Msa1175160:CDS |
| TTCTTCGTTCGGTTTAGCAT+AGG | 0.529758 | 8_1:+6441587 | None:intergenic |
| TGCAGGTGAGGATGCAGAAG+AGG | 0.532110 | 8_1:-6441085 | Msa1175160:CDS |
| GGTGGCAGATGGAGAAGGAA+TGG | 0.534084 | 8_1:-6441143 | Msa1175160:CDS |
| CTCTTAATAAGAAGAATATG+AGG | 0.536262 | 8_1:-6441734 | Msa1175160:CDS |
| CTTAAGAGCTCTTTCACGGA+TGG | 0.538525 | 8_1:+6441452 | None:intergenic |
| AATTACACAGATCATAAGGC+TGG | 0.540860 | 8_1:-6441360 | Msa1175160:CDS |
| GCGAAGCACTATTGAGAATG+AGG | 0.543921 | 8_1:-6441709 | Msa1175160:CDS |
| TTACAAATCTGGGTGGCAGA+TGG | 0.553483 | 8_1:-6441154 | Msa1175160:CDS |
| TATTAGTATGGAAGATTCTG+AGG | 0.556688 | 8_1:-6441933 | Msa1175160:CDS |
| ACAGAAGTAGTGCTTGCACT+TGG | 0.557721 | 8_1:+6440978 | None:intergenic |
| TCATGAGATTCGAAAGAAGA+TGG | 0.559186 | 8_1:-6440777 | Msa1175160:CDS |
| CAAGCGACAGAGAGTCTCAA+AGG | 0.560300 | 8_1:-6441429 | Msa1175160:CDS |
| AACTGGTTACTGTGGGTATG+GGG | 0.562522 | 8_1:-6441208 | Msa1175160:CDS |
| AGGTGAGGATGCAGAAGAGG+AGG | 0.575195 | 8_1:-6441082 | Msa1175160:CDS |
| ATCTGGGTGGCAGATGGAGA+AGG | 0.575589 | 8_1:-6441148 | Msa1175160:CDS |
| GGGATGAAGCTGAGAAAGCA+AGG | 0.584805 | 8_1:-6441122 | Msa1175160:CDS |
| TATAAGGAAACTGGTTACTG+TGG | 0.586008 | 8_1:-6441216 | Msa1175160:CDS |
| ACAATTGCCAGTGAAAAGGC+TGG | 0.588175 | 8_1:-6441321 | Msa1175160:CDS |
| CGGAGAAGATGTGTTGGCCG+CGG | 0.589229 | 8_1:+6442288 | None:intergenic |
| GATGAGATTGGCTGCAGGTG+AGG | 0.590274 | 8_1:-6441097 | Msa1175160:CDS |
| GGCAGAGCTCTTTGAAGAGG+CGG | 0.591989 | 8_1:+6441608 | None:intergenic |
| GCAAATCACCAAACTGAACA+AGG | 0.596043 | 8_1:-6441899 | Msa1175160:intron |
| AGAGCTCTTTGAAGAGGCGG+TGG | 0.597520 | 8_1:+6441611 | None:intergenic |
| ATAGGCAGAGCTCTTTGAAG+AGG | 0.600392 | 8_1:+6441605 | None:intergenic |
| GAAAAGGCTGGTGGGTCACA+CGG | 0.600903 | 8_1:-6441309 | Msa1175160:CDS |
| AGGAGGATGAGATTGGCTGC+AGG | 0.603143 | 8_1:-6441102 | Msa1175160:CDS |
| CTGAATCGGAGAAGATGTGT+TGG | 0.606762 | 8_1:+6442282 | None:intergenic |
| ATTGCCAGTGAAAAGGCTGG+TGG | 0.607353 | 8_1:-6441318 | Msa1175160:CDS |
| AGCACTATTGAGAATGAGGA+TGG | 0.610986 | 8_1:-6441705 | Msa1175160:CDS |
| GGTGAGGATGCAGAAGAGGA+GGG | 0.615274 | 8_1:-6441081 | Msa1175160:CDS |
| GATTCGAAAGAAGATGGCTG+AGG | 0.618322 | 8_1:-6440771 | Msa1175160:CDS |
| ATAAGGAAACTGGTTACTGT+GGG | 0.628079 | 8_1:-6441215 | Msa1175160:CDS |
| TTATCAGCCGGATATATGCA+AGG | 0.629970 | 8_1:-6441241 | Msa1175160:CDS |
| TTGCCAGTGAAAAGGCTGGT+GGG | 0.630138 | 8_1:-6441317 | Msa1175160:CDS |
| GCATCAAAACCAAGTTGCCG+CGG | 0.631230 | 8_1:-6442305 | Msa1175160:CDS |
| AGTCTCAGTCTCCAAAGTTG+CGG | 0.639796 | 8_1:+6441497 | None:intergenic |
| TAAATGGGAAAACAAAAGAG+AGG | 0.644975 | 8_1:+6440687 | None:intergenic |
| ATGTGAGCTGAAGCCCGAAG+AGG | 0.647511 | 8_1:+6441285 | None:intergenic |
| TGTAAGTTTATGCATGATCG+AGG | 0.650874 | 8_1:-6441180 | Msa1175160:CDS |
| GAGGATGTAAAATTATACAA+AGG | 0.658301 | 8_1:-6441390 | Msa1175160:CDS |
| TGAGGATGGCTCGAACAATG+AGG | 0.664875 | 8_1:-6441691 | Msa1175160:CDS |
| AGGAAAGAGTAATCGTTCCG+AGG | 0.677145 | 8_1:-6441409 | Msa1175160:CDS |
| ATGAAGCTGAGAAAGCAAGG+AGG | 0.730792 | 8_1:-6441119 | Msa1175160:CDS |
| GAGGTGATTACAAATCTGGG+TGG | 0.758440 | 8_1:-6441161 | Msa1175160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAAACGATATTAA+AGG | + | chr8_1:6440702-6440721 | None:intergenic | 10.0% |
| !! | TTAATATCGTTTAATATTTA+TGG | - | chr8_1:6440702-6440721 | Msa1175160:three_prime_UTR | 10.0% |
| !!! | AAAAAGAAATTCAAATTTTA+TGG | - | chr8_1:6440931-6440950 | Msa1175160:intron | 10.0% |
| !!! | AAAAGAAATTCAAATTTTAT+GGG | - | chr8_1:6440932-6440951 | Msa1175160:intron | 10.0% |
| !! | TAAATATTAAACGATATTAA+AGG | + | chr8_1:6440702-6440721 | None:intergenic | 10.0% |
| !! | TTAATATCGTTTAATATTTA+TGG | - | chr8_1:6440702-6440721 | Msa1175160:three_prime_UTR | 10.0% |
| !!! | AAAAAGAAATTCAAATTTTA+TGG | - | chr8_1:6440931-6440950 | Msa1175160:intron | 10.0% |
| !!! | AAAAGAAATTCAAATTTTAT+GGG | - | chr8_1:6440932-6440951 | Msa1175160:intron | 10.0% |
| !! | TGTTATCTAACTATAAATAT+AGG | + | chr8_1:6440834-6440853 | None:intergenic | 15.0% |
| !! | CAAATTCAAATTTCAAAATT+TGG | - | chr8_1:6441068-6441087 | Msa1175160:CDS | 15.0% |
| !! | TGTTATCTAACTATAAATAT+AGG | + | chr8_1:6440834-6440853 | None:intergenic | 15.0% |
| !! | CAAATTCAAATTTCAAAATT+TGG | - | chr8_1:6441068-6441087 | Msa1175160:CDS | 15.0% |
| !! | TATTAAAGGATTATACTTGA+CGG | + | chr8_1:6440688-6440707 | None:intergenic | 20.0% |
| !! | TTTGTCTATATTAAAGGAAT+TGG | + | chr8_1:6440734-6440753 | None:intergenic | 20.0% |
| !!! | ATGGTTTTTGTCTATATTAA+AGG | + | chr8_1:6440740-6440759 | None:intergenic | 20.0% |
| !! | GAAATCACAAGAATAATTAT+TGG | + | chr8_1:6441396-6441415 | None:intergenic | 20.0% |
| !!! | GTTATAATATTTGGTTTGTA+AGG | + | chr8_1:6441516-6441535 | None:intergenic | 20.0% |
| !! | TTTCAGTTGGTTATAATATT+TGG | + | chr8_1:6441525-6441544 | None:intergenic | 20.0% |
| !!! | TTTGTATAATTTTACATCCT+CGG | + | chr8_1:6442247-6442266 | None:intergenic | 20.0% |
| !! | TATTAAAGGATTATACTTGA+CGG | + | chr8_1:6440688-6440707 | None:intergenic | 20.0% |
| !! | TTTGTCTATATTAAAGGAAT+TGG | + | chr8_1:6440734-6440753 | None:intergenic | 20.0% |
| !!! | ATGGTTTTTGTCTATATTAA+AGG | + | chr8_1:6440740-6440759 | None:intergenic | 20.0% |
| !! | GAAATCACAAGAATAATTAT+TGG | + | chr8_1:6441396-6441415 | None:intergenic | 20.0% |
| !!! | GTTATAATATTTGGTTTGTA+AGG | + | chr8_1:6441516-6441535 | None:intergenic | 20.0% |
| !! | TTTCAGTTGGTTATAATATT+TGG | + | chr8_1:6441525-6441544 | None:intergenic | 20.0% |
| !!! | TTTGTATAATTTTACATCCT+CGG | + | chr8_1:6442247-6442266 | None:intergenic | 20.0% |
| ! | ATCGTTTAATATTTATGGAC+AGG | - | chr8_1:6440707-6440726 | Msa1175160:three_prime_UTR | 25.0% |
| !!! | AAGTGATTTTAGAATGAGAA+AGG | - | chr8_1:6440786-6440805 | Msa1175160:CDS | 25.0% |
| !! | AGATAACAGACTTTATTTGA+TGG | - | chr8_1:6440846-6440865 | Msa1175160:intron | 25.0% |
| ! | TTAATTAAATGTTGTGAAGC+AGG | - | chr8_1:6440908-6440927 | Msa1175160:intron | 25.0% |
| ! | AACTCTAATAAACTTTCAGT+TGG | + | chr8_1:6441538-6441557 | None:intergenic | 25.0% |
| !!! | ATGATTTTGGGTTTAGTTAT+TGG | - | chr8_1:6441594-6441613 | Msa1175160:CDS | 25.0% |
| ! | CTCATATTCTTCTTATTAAG+AGG | + | chr8_1:6441904-6441923 | None:intergenic | 25.0% |
| ! | CTCTTAATAAGAAGAATATG+AGG | - | chr8_1:6441902-6441921 | Msa1175160:CDS | 25.0% |
| ! | GAGGATGTAAAATTATACAA+AGG | - | chr8_1:6442246-6442265 | Msa1175160:intron | 25.0% |
| ! | CAATAATTACACAGATCATA+AGG | - | chr8_1:6442272-6442291 | Msa1175160:intron | 25.0% |
| ! | TTATAATCCTTGCATATATC+CGG | + | chr8_1:6442405-6442424 | None:intergenic | 25.0% |
| !!! | TGAATTTGCTTTGAAGTTAA+GGG | + | chr8_1:6442707-6442726 | None:intergenic | 25.0% |
| !!! | TTGAATTTGCTTTGAAGTTA+AGG | + | chr8_1:6442708-6442727 | None:intergenic | 25.0% |
| ! | ATCGTTTAATATTTATGGAC+AGG | - | chr8_1:6440707-6440726 | Msa1175160:three_prime_UTR | 25.0% |
| !!! | AAGTGATTTTAGAATGAGAA+AGG | - | chr8_1:6440786-6440805 | Msa1175160:CDS | 25.0% |
| !! | AGATAACAGACTTTATTTGA+TGG | - | chr8_1:6440846-6440865 | Msa1175160:intron | 25.0% |
| ! | TTAATTAAATGTTGTGAAGC+AGG | - | chr8_1:6440908-6440927 | Msa1175160:intron | 25.0% |
| ! | AACTCTAATAAACTTTCAGT+TGG | + | chr8_1:6441538-6441557 | None:intergenic | 25.0% |
| !!! | ATGATTTTGGGTTTAGTTAT+TGG | - | chr8_1:6441594-6441613 | Msa1175160:CDS | 25.0% |
| ! | CTCATATTCTTCTTATTAAG+AGG | + | chr8_1:6441904-6441923 | None:intergenic | 25.0% |
| ! | CTCTTAATAAGAAGAATATG+AGG | - | chr8_1:6441902-6441921 | Msa1175160:CDS | 25.0% |
| ! | GAGGATGTAAAATTATACAA+AGG | - | chr8_1:6442246-6442265 | Msa1175160:intron | 25.0% |
| ! | CAATAATTACACAGATCATA+AGG | - | chr8_1:6442272-6442291 | Msa1175160:intron | 25.0% |
| ! | TTATAATCCTTGCATATATC+CGG | + | chr8_1:6442405-6442424 | None:intergenic | 25.0% |
| !!! | TGAATTTGCTTTGAAGTTAA+GGG | + | chr8_1:6442707-6442726 | None:intergenic | 25.0% |
| !!! | TTGAATTTGCTTTGAAGTTA+AGG | + | chr8_1:6442708-6442727 | None:intergenic | 25.0% |
| AACCATTTCTTGAAATGAAC+AGG | - | chr8_1:6440754-6440773 | Msa1175160:exon | 30.0% | |
| TCTAACTATAAATATAGGCG+TGG | + | chr8_1:6440829-6440848 | None:intergenic | 30.0% | |
| CTGAAAGGTCATATTGAAAT+AGG | - | chr8_1:6440957-6440976 | Msa1175160:intron | 30.0% | |
| AAAGGTCATATTGAAATAGG+AGG | - | chr8_1:6440960-6440979 | Msa1175160:CDS | 30.0% | |
| ATATTGAAATAGGAGGCAAA+TGG | - | chr8_1:6440967-6440986 | Msa1175160:CDS | 30.0% | |
| TAAGCTTGGTAAATCACTTT+AGG | - | chr8_1:6441033-6441052 | Msa1175160:CDS | 30.0% | |
| AGGGAAATTAGCAAAGAATT+AGG | - | chr8_1:6441188-6441207 | Msa1175160:CDS | 30.0% | |
| GGGAAATTAGCAAAGAATTA+GGG | - | chr8_1:6441189-6441208 | Msa1175160:CDS | 30.0% | |
| ! | ACTTACTCTAAAAGCCAATT+AGG | + | chr8_1:6441232-6441251 | None:intergenic | 30.0% |
| AACCCAAAATCATGTAAAGA+CGG | + | chr8_1:6441587-6441606 | None:intergenic | 30.0% | |
| GTCGCTAAATATTAATGTAG+AGG | + | chr8_1:6441634-6441653 | None:intergenic | 30.0% | |
| GTTACTTCTCAATTTGATTC+AGG | - | chr8_1:6441661-6441680 | Msa1175160:CDS | 30.0% | |
| TATTAGTATGGAAGATTCTG+AGG | - | chr8_1:6441703-6441722 | Msa1175160:CDS | 30.0% | |
| TATACATACCTTGTTCAGTT+TGG | + | chr8_1:6441748-6441767 | None:intergenic | 30.0% | |
| GTACAAAGAAATAAATGCAG+AGG | + | chr8_1:6441819-6441838 | None:intergenic | 30.0% | |
| AAAATGAAAGCTAGGTTTCT+TGG | + | chr8_1:6442076-6442095 | None:intergenic | 30.0% | |
| GGATATATGCAAGGATTATA+AGG | - | chr8_1:6442404-6442423 | Msa1175160:intron | 30.0% | |
| CATTTGTAGAAATCCATTTG+TGG | - | chr8_1:6442623-6442642 | Msa1175160:intron | 30.0% | |
| AGTTACGCATAATTAAAAGG+GGG | + | chr8_1:6442757-6442776 | None:intergenic | 30.0% | |
| GAGTTACGCATAATTAAAAG+GGG | + | chr8_1:6442758-6442777 | None:intergenic | 30.0% | |
| GGAGTTACGCATAATTAAAA+GGG | + | chr8_1:6442759-6442778 | None:intergenic | 30.0% | |
| AGGAGTTACGCATAATTAAA+AGG | + | chr8_1:6442760-6442779 | None:intergenic | 30.0% | |
| AAAATAGTCATTGATCGTAC+TGG | + | chr8_1:6442905-6442924 | None:intergenic | 30.0% | |
| !!! | CAATGACTATTTTTGCTTCT+TGG | - | chr8_1:6442912-6442931 | Msa1175160:intron | 30.0% |
| TAAATGGGAAAACAAAAGAG+AGG | + | chr8_1:6442952-6442971 | None:intergenic | 30.0% | |
| ! | CATGTGCTTTGAACTTAAAT+GGG | + | chr8_1:6442967-6442986 | None:intergenic | 30.0% |
| AACCATTTCTTGAAATGAAC+AGG | - | chr8_1:6440754-6440773 | Msa1175160:exon | 30.0% | |
| TCTAACTATAAATATAGGCG+TGG | + | chr8_1:6440829-6440848 | None:intergenic | 30.0% | |
| CTGAAAGGTCATATTGAAAT+AGG | - | chr8_1:6440957-6440976 | Msa1175160:intron | 30.0% | |
| AAAGGTCATATTGAAATAGG+AGG | - | chr8_1:6440960-6440979 | Msa1175160:CDS | 30.0% | |
| ATATTGAAATAGGAGGCAAA+TGG | - | chr8_1:6440967-6440986 | Msa1175160:CDS | 30.0% | |
| TAAGCTTGGTAAATCACTTT+AGG | - | chr8_1:6441033-6441052 | Msa1175160:CDS | 30.0% | |
| AGGGAAATTAGCAAAGAATT+AGG | - | chr8_1:6441188-6441207 | Msa1175160:CDS | 30.0% | |
| GGGAAATTAGCAAAGAATTA+GGG | - | chr8_1:6441189-6441208 | Msa1175160:CDS | 30.0% | |
| ! | ACTTACTCTAAAAGCCAATT+AGG | + | chr8_1:6441232-6441251 | None:intergenic | 30.0% |
| AACCCAAAATCATGTAAAGA+CGG | + | chr8_1:6441587-6441606 | None:intergenic | 30.0% | |
| GTCGCTAAATATTAATGTAG+AGG | + | chr8_1:6441634-6441653 | None:intergenic | 30.0% | |
| GTTACTTCTCAATTTGATTC+AGG | - | chr8_1:6441661-6441680 | Msa1175160:CDS | 30.0% | |
| TATTAGTATGGAAGATTCTG+AGG | - | chr8_1:6441703-6441722 | Msa1175160:CDS | 30.0% | |
| TATACATACCTTGTTCAGTT+TGG | + | chr8_1:6441748-6441767 | None:intergenic | 30.0% | |
| GTACAAAGAAATAAATGCAG+AGG | + | chr8_1:6441819-6441838 | None:intergenic | 30.0% | |
| AAAATGAAAGCTAGGTTTCT+TGG | + | chr8_1:6442076-6442095 | None:intergenic | 30.0% | |
| GGATATATGCAAGGATTATA+AGG | - | chr8_1:6442404-6442423 | Msa1175160:intron | 30.0% | |
| CATTTGTAGAAATCCATTTG+TGG | - | chr8_1:6442623-6442642 | Msa1175160:intron | 30.0% | |
| AGTTACGCATAATTAAAAGG+GGG | + | chr8_1:6442757-6442776 | None:intergenic | 30.0% | |
| GAGTTACGCATAATTAAAAG+GGG | + | chr8_1:6442758-6442777 | None:intergenic | 30.0% | |
| GGAGTTACGCATAATTAAAA+GGG | + | chr8_1:6442759-6442778 | None:intergenic | 30.0% | |
| AGGAGTTACGCATAATTAAA+AGG | + | chr8_1:6442760-6442779 | None:intergenic | 30.0% | |
| AAAATAGTCATTGATCGTAC+TGG | + | chr8_1:6442905-6442924 | None:intergenic | 30.0% | |
| !!! | CAATGACTATTTTTGCTTCT+TGG | - | chr8_1:6442912-6442931 | Msa1175160:intron | 30.0% |
| TAAATGGGAAAACAAAAGAG+AGG | + | chr8_1:6442952-6442971 | None:intergenic | 30.0% | |
| ! | CATGTGCTTTGAACTTAAAT+GGG | + | chr8_1:6442967-6442986 | None:intergenic | 30.0% |
| GACCTGTTCATTTCAAGAAA+TGG | + | chr8_1:6440759-6440778 | None:intergenic | 35.0% | |
| AACTATAAATATAGGCGTGG+TGG | + | chr8_1:6440826-6440845 | None:intergenic | 35.0% | |
| !! | AGACTTTATTTGATGGTGCA+TGG | - | chr8_1:6440853-6440872 | Msa1175160:intron | 35.0% |
| !! | GACTTTATTTGATGGTGCAT+GGG | - | chr8_1:6440854-6440873 | Msa1175160:intron | 35.0% |
| ! | CAAATTTTATGGGAGCTGAA+AGG | - | chr8_1:6440942-6440961 | Msa1175160:intron | 35.0% |
| ! | CTTGGTAAATCACTTTAGGA+GGG | - | chr8_1:6441037-6441056 | Msa1175160:CDS | 35.0% |
| AATGGGGACTCATTAAATGT+TGG | + | chr8_1:6441134-6441153 | None:intergenic | 35.0% | |
| CACTCTTTGGTTAAGTACTT+TGG | - | chr8_1:6441165-6441184 | Msa1175160:CDS | 35.0% | |
| TCTTTGGTTAAGTACTTTGG+AGG | - | chr8_1:6441168-6441187 | Msa1175160:CDS | 35.0% | |
| CTTTGGTTAAGTACTTTGGA+GGG | - | chr8_1:6441169-6441188 | Msa1175160:CDS | 35.0% | |
| GAAACCTAACTAACCTGAAT+CGG | + | chr8_1:6441371-6441390 | None:intergenic | 35.0% | |
| TCAGTTAAGCGAATAAAAGC+AGG | + | chr8_1:6441457-6441476 | None:intergenic | 35.0% | |
| ! | GATACAATGTGATTTTGCAG+TGG | + | chr8_1:6441564-6441583 | None:intergenic | 35.0% |
| ! | ATCCCGTCTTTACATGATTT+TGG | - | chr8_1:6441581-6441600 | Msa1175160:CDS | 35.0% |
| ! | TCCCGTCTTTACATGATTTT+GGG | - | chr8_1:6441582-6441601 | Msa1175160:CDS | 35.0% |
| ACCCAAAATCATGTAAAGAC+GGG | + | chr8_1:6441586-6441605 | None:intergenic | 35.0% | |
| GAAGACTCAAAATGAAAGCT+AGG | + | chr8_1:6442084-6442103 | None:intergenic | 35.0% | |
| AATTACACAGATCATAAGGC+TGG | - | chr8_1:6442276-6442295 | Msa1175160:intron | 35.0% | |
| AGCAAGATTTGATTATCAGC+CGG | - | chr8_1:6442383-6442402 | Msa1175160:intron | 35.0% | |
| TGCAAGGATTATAAGGAAAC+TGG | - | chr8_1:6442411-6442430 | Msa1175160:intron | 35.0% | |
| TATAAGGAAACTGGTTACTG+TGG | - | chr8_1:6442420-6442439 | Msa1175160:intron | 35.0% | |
| ATAAGGAAACTGGTTACTGT+GGG | - | chr8_1:6442421-6442440 | Msa1175160:intron | 35.0% | |
| TGTAAGTTTATGCATGATCG+AGG | - | chr8_1:6442456-6442475 | Msa1175160:intron | 35.0% | |
| ATCGAGGTGATTACAAATCT+GGG | - | chr8_1:6442472-6442491 | Msa1175160:intron | 35.0% | |
| CTACAAATGAAACACGCAAA+TGG | + | chr8_1:6442612-6442631 | None:intergenic | 35.0% | |
| ATGATGCTGCAAGTAAAATG+AGG | + | chr8_1:6442780-6442799 | None:intergenic | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | chr8_1:6442836-6442855 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | chr8_1:6442835-6442854 | Msa1175160:intron | 35.0% |
| TCATGAGATTCGAAAGAAGA+TGG | - | chr8_1:6442859-6442878 | Msa1175160:intron | 35.0% | |
| !!! | TGACTATTTTTGCTTCTTGG+AGG | - | chr8_1:6442915-6442934 | Msa1175160:intron | 35.0% |
| GACCTGTTCATTTCAAGAAA+TGG | + | chr8_1:6440759-6440778 | None:intergenic | 35.0% | |
| AACTATAAATATAGGCGTGG+TGG | + | chr8_1:6440826-6440845 | None:intergenic | 35.0% | |
| !! | AGACTTTATTTGATGGTGCA+TGG | - | chr8_1:6440853-6440872 | Msa1175160:intron | 35.0% |
| !! | GACTTTATTTGATGGTGCAT+GGG | - | chr8_1:6440854-6440873 | Msa1175160:intron | 35.0% |
| ! | CAAATTTTATGGGAGCTGAA+AGG | - | chr8_1:6440942-6440961 | Msa1175160:intron | 35.0% |
| ! | CTTGGTAAATCACTTTAGGA+GGG | - | chr8_1:6441037-6441056 | Msa1175160:CDS | 35.0% |
| AATGGGGACTCATTAAATGT+TGG | + | chr8_1:6441134-6441153 | None:intergenic | 35.0% | |
| CACTCTTTGGTTAAGTACTT+TGG | - | chr8_1:6441165-6441184 | Msa1175160:CDS | 35.0% | |
| TCTTTGGTTAAGTACTTTGG+AGG | - | chr8_1:6441168-6441187 | Msa1175160:CDS | 35.0% | |
| CTTTGGTTAAGTACTTTGGA+GGG | - | chr8_1:6441169-6441188 | Msa1175160:CDS | 35.0% | |
| GAAACCTAACTAACCTGAAT+CGG | + | chr8_1:6441371-6441390 | None:intergenic | 35.0% | |
| TCAGTTAAGCGAATAAAAGC+AGG | + | chr8_1:6441457-6441476 | None:intergenic | 35.0% | |
| ! | GATACAATGTGATTTTGCAG+TGG | + | chr8_1:6441564-6441583 | None:intergenic | 35.0% |
| ! | ATCCCGTCTTTACATGATTT+TGG | - | chr8_1:6441581-6441600 | Msa1175160:CDS | 35.0% |
| ! | TCCCGTCTTTACATGATTTT+GGG | - | chr8_1:6441582-6441601 | Msa1175160:CDS | 35.0% |
| ACCCAAAATCATGTAAAGAC+GGG | + | chr8_1:6441586-6441605 | None:intergenic | 35.0% | |
| GAAGACTCAAAATGAAAGCT+AGG | + | chr8_1:6442084-6442103 | None:intergenic | 35.0% | |
| AATTACACAGATCATAAGGC+TGG | - | chr8_1:6442276-6442295 | Msa1175160:intron | 35.0% | |
| AGCAAGATTTGATTATCAGC+CGG | - | chr8_1:6442383-6442402 | Msa1175160:intron | 35.0% | |
| TGCAAGGATTATAAGGAAAC+TGG | - | chr8_1:6442411-6442430 | Msa1175160:intron | 35.0% | |
| TATAAGGAAACTGGTTACTG+TGG | - | chr8_1:6442420-6442439 | Msa1175160:intron | 35.0% | |
| ATAAGGAAACTGGTTACTGT+GGG | - | chr8_1:6442421-6442440 | Msa1175160:intron | 35.0% | |
| TGTAAGTTTATGCATGATCG+AGG | - | chr8_1:6442456-6442475 | Msa1175160:intron | 35.0% | |
| ATCGAGGTGATTACAAATCT+GGG | - | chr8_1:6442472-6442491 | Msa1175160:intron | 35.0% | |
| CTACAAATGAAACACGCAAA+TGG | + | chr8_1:6442612-6442631 | None:intergenic | 35.0% | |
| ATGATGCTGCAAGTAAAATG+AGG | + | chr8_1:6442780-6442799 | None:intergenic | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | chr8_1:6442836-6442855 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | chr8_1:6442835-6442854 | Msa1175160:intron | 35.0% |
| TCATGAGATTCGAAAGAAGA+TGG | - | chr8_1:6442859-6442878 | Msa1175160:intron | 35.0% | |
| !!! | TGACTATTTTTGCTTCTTGG+AGG | - | chr8_1:6442915-6442934 | Msa1175160:intron | 35.0% |
| GCTTGGTAAATCACTTTAGG+AGG | - | chr8_1:6441036-6441055 | Msa1175160:CDS | 40.0% | |
| ! | ATCACTTTAGGAGGGAAATG+AGG | - | chr8_1:6441045-6441064 | Msa1175160:CDS | 40.0% |
| ! | AGAGTGCTTTGCAAGCTAAT+GGG | + | chr8_1:6441151-6441170 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTTGCAAGCTAA+TGG | + | chr8_1:6441152-6441171 | None:intergenic | 40.0% |
| !! | TTAGCTTGCAAAGCACTCTT+TGG | - | chr8_1:6441152-6441171 | Msa1175160:CDS | 40.0% |
| AGCCAATTGCTTGACCTAAT+TGG | - | chr8_1:6441215-6441234 | Msa1175160:CDS | 40.0% | |
| AGCCAATTAGGTCAAGCAAT+TGG | + | chr8_1:6441220-6441239 | None:intergenic | 40.0% | |
| ! | TTCTCCGATTCAGGTTAGTT+AGG | - | chr8_1:6441364-6441383 | Msa1175160:CDS | 40.0% |
| !!! | TGATTCAGGTTTTTTCGTCG+TGG | - | chr8_1:6441675-6441694 | Msa1175160:CDS | 40.0% |
| ! | TTGGTGATTTGCAGGAGATT+TGG | + | chr8_1:6441729-6441748 | None:intergenic | 40.0% |
| ! | TGTTCAGTTTGGTGATTTGC+AGG | + | chr8_1:6441737-6441756 | None:intergenic | 40.0% |
| GCAAATCACCAAACTGAACA+AGG | - | chr8_1:6441737-6441756 | Msa1175160:CDS | 40.0% | |
| AGCACTATTGAGAATGAGGA+TGG | - | chr8_1:6441931-6441950 | Msa1175160:CDS | 40.0% | |
| TTCTTCGTTCGGTTTAGCAT+AGG | + | chr8_1:6442052-6442071 | None:intergenic | 40.0% | |
| GGTTTCTTGGATTCTTCGTT+CGG | + | chr8_1:6442063-6442082 | None:intergenic | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | chr8_1:6442191-6442210 | None:intergenic | 40.0% | |
| GCAAACAATTGCCAGTGAAA+AGG | - | chr8_1:6442311-6442330 | Msa1175160:CDS | 40.0% | |
| TTATCAGCCGGATATATGCA+AGG | - | chr8_1:6442395-6442414 | Msa1175160:intron | 40.0% | |
| AAACTGGTTACTGTGGGTAT+GGG | - | chr8_1:6442427-6442446 | Msa1175160:intron | 40.0% | |
| GATCGAGGTGATTACAAATC+TGG | - | chr8_1:6442471-6442490 | Msa1175160:intron | 40.0% | |
| GCTTGGTAAATCACTTTAGG+AGG | - | chr8_1:6441036-6441055 | Msa1175160:CDS | 40.0% | |
| ! | ATCACTTTAGGAGGGAAATG+AGG | - | chr8_1:6441045-6441064 | Msa1175160:CDS | 40.0% |
| ! | AGAGTGCTTTGCAAGCTAAT+GGG | + | chr8_1:6441151-6441170 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTTGCAAGCTAA+TGG | + | chr8_1:6441152-6441171 | None:intergenic | 40.0% |
| !! | TTAGCTTGCAAAGCACTCTT+TGG | - | chr8_1:6441152-6441171 | Msa1175160:CDS | 40.0% |
| AGCCAATTGCTTGACCTAAT+TGG | - | chr8_1:6441215-6441234 | Msa1175160:CDS | 40.0% | |
| AGCCAATTAGGTCAAGCAAT+TGG | + | chr8_1:6441220-6441239 | None:intergenic | 40.0% | |
| ! | TTCTCCGATTCAGGTTAGTT+AGG | - | chr8_1:6441364-6441383 | Msa1175160:CDS | 40.0% |
| !!! | TGATTCAGGTTTTTTCGTCG+TGG | - | chr8_1:6441675-6441694 | Msa1175160:CDS | 40.0% |
| ! | TTGGTGATTTGCAGGAGATT+TGG | + | chr8_1:6441729-6441748 | None:intergenic | 40.0% |
| ! | TGTTCAGTTTGGTGATTTGC+AGG | + | chr8_1:6441737-6441756 | None:intergenic | 40.0% |
| GCAAATCACCAAACTGAACA+AGG | - | chr8_1:6441737-6441756 | Msa1175160:CDS | 40.0% | |
| AGCACTATTGAGAATGAGGA+TGG | - | chr8_1:6441931-6441950 | Msa1175160:CDS | 40.0% | |
| TTCTTCGTTCGGTTTAGCAT+AGG | + | chr8_1:6442052-6442071 | None:intergenic | 40.0% | |
| GGTTTCTTGGATTCTTCGTT+CGG | + | chr8_1:6442063-6442082 | None:intergenic | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | chr8_1:6442191-6442210 | None:intergenic | 40.0% | |
| GCAAACAATTGCCAGTGAAA+AGG | - | chr8_1:6442311-6442330 | Msa1175160:CDS | 40.0% | |
| TTATCAGCCGGATATATGCA+AGG | - | chr8_1:6442395-6442414 | Msa1175160:intron | 40.0% | |
| AAACTGGTTACTGTGGGTAT+GGG | - | chr8_1:6442427-6442446 | Msa1175160:intron | 40.0% | |
| GATCGAGGTGATTACAAATC+TGG | - | chr8_1:6442471-6442490 | Msa1175160:intron | 40.0% | |
| ! | ATAGGCGTGGTGGAAACAAA+AGG | + | chr8_1:6440816-6440835 | None:intergenic | 45.0% |
| CTGCATTTATTGCTGTCGTG+TGG | - | chr8_1:6441001-6441020 | Msa1175160:CDS | 45.0% | |
| ! | TGGTGTGTGTTGCAAGCTTT+TGG | + | chr8_1:6441114-6441133 | None:intergenic | 45.0% |
| GAGTGCTTTGCAAGCTAATG+GGG | + | chr8_1:6441150-6441169 | None:intergenic | 45.0% | |
| CAATTGCCAGCTTCATCGAT+CGG | - | chr8_1:6441277-6441296 | Msa1175160:CDS | 45.0% | |
| ! | GAAGTGGCTGAAGCTTTATG+CGG | + | chr8_1:6441307-6441326 | None:intergenic | 45.0% |
| CATAAAGCTTCAGCCACTTC+TGG | - | chr8_1:6441307-6441326 | Msa1175160:CDS | 45.0% | |
| !!! | TGGTTTTGATGCTCCAGAAG+TGG | + | chr8_1:6441323-6441342 | None:intergenic | 45.0% |
| CTGAATCGGAGAAGATGTGT+TGG | + | chr8_1:6441357-6441376 | None:intergenic | 45.0% | |
| CAACACATCTTCTCCGATTC+AGG | - | chr8_1:6441355-6441374 | Msa1175160:CDS | 45.0% | |
| GTCGTGGCAGCTTATTAGTA+TGG | - | chr8_1:6441691-6441710 | Msa1175160:CDS | 45.0% | |
| ! | GCGAAGCACTATTGAGAATG+AGG | - | chr8_1:6441927-6441946 | Msa1175160:CDS | 45.0% |
| ! | ATAGGCAGAGCTCTTTGAAG+AGG | + | chr8_1:6442034-6442053 | None:intergenic | 45.0% |
| TAGCAAAGCAACCGCAACTT+TGG | - | chr8_1:6442128-6442147 | Msa1175160:intron | 45.0% | |
| AGTCTCAGTCTCCAAAGTTG+CGG | + | chr8_1:6442142-6442161 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | chr8_1:6442187-6442206 | None:intergenic | 45.0% | |
| AGGAAAGAGTAATCGTTCCG+AGG | - | chr8_1:6442227-6442246 | Msa1175160:intron | 45.0% | |
| ACAATTGCCAGTGAAAAGGC+TGG | - | chr8_1:6442315-6442334 | Msa1175160:CDS | 45.0% | |
| GAAACTGGTTACTGTGGGTA+TGG | - | chr8_1:6442426-6442445 | Msa1175160:intron | 45.0% | |
| AACTGGTTACTGTGGGTATG+GGG | - | chr8_1:6442428-6442447 | Msa1175160:intron | 45.0% | |
| GAGGTGATTACAAATCTGGG+TGG | - | chr8_1:6442475-6442494 | Msa1175160:intron | 45.0% | |
| TTACAAATCTGGGTGGCAGA+TGG | - | chr8_1:6442482-6442501 | Msa1175160:intron | 45.0% | |
| ATGAAGCTGAGAAAGCAAGG+AGG | - | chr8_1:6442517-6442536 | Msa1175160:intron | 45.0% | |
| GAAAGCAAGGAGGATGAGAT+TGG | - | chr8_1:6442527-6442546 | Msa1175160:intron | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | chr8_1:6442639-6442658 | None:intergenic | 45.0% | |
| ACAGAAGTAGTGCTTGCACT+TGG | + | chr8_1:6442661-6442680 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | chr8_1:6442677-6442696 | Msa1175160:intron | 45.0% |
| TAAAAATGCCAAGCGTAGGC+TGG | + | chr8_1:6442832-6442851 | None:intergenic | 45.0% | |
| GATTCGAAAGAAGATGGCTG+AGG | - | chr8_1:6442865-6442884 | Msa1175160:intron | 45.0% | |
| ! | ATAGGCGTGGTGGAAACAAA+AGG | + | chr8_1:6440816-6440835 | None:intergenic | 45.0% |
| CTGCATTTATTGCTGTCGTG+TGG | - | chr8_1:6441001-6441020 | Msa1175160:CDS | 45.0% | |
| ! | TGGTGTGTGTTGCAAGCTTT+TGG | + | chr8_1:6441114-6441133 | None:intergenic | 45.0% |
| GAGTGCTTTGCAAGCTAATG+GGG | + | chr8_1:6441150-6441169 | None:intergenic | 45.0% | |
| CAATTGCCAGCTTCATCGAT+CGG | - | chr8_1:6441277-6441296 | Msa1175160:CDS | 45.0% | |
| ! | GAAGTGGCTGAAGCTTTATG+CGG | + | chr8_1:6441307-6441326 | None:intergenic | 45.0% |
| CATAAAGCTTCAGCCACTTC+TGG | - | chr8_1:6441307-6441326 | Msa1175160:CDS | 45.0% | |
| !!! | TGGTTTTGATGCTCCAGAAG+TGG | + | chr8_1:6441323-6441342 | None:intergenic | 45.0% |
| CTGAATCGGAGAAGATGTGT+TGG | + | chr8_1:6441357-6441376 | None:intergenic | 45.0% | |
| CAACACATCTTCTCCGATTC+AGG | - | chr8_1:6441355-6441374 | Msa1175160:CDS | 45.0% | |
| GTCGTGGCAGCTTATTAGTA+TGG | - | chr8_1:6441691-6441710 | Msa1175160:CDS | 45.0% | |
| ! | GCGAAGCACTATTGAGAATG+AGG | - | chr8_1:6441927-6441946 | Msa1175160:CDS | 45.0% |
| ! | ATAGGCAGAGCTCTTTGAAG+AGG | + | chr8_1:6442034-6442053 | None:intergenic | 45.0% |
| TAGCAAAGCAACCGCAACTT+TGG | - | chr8_1:6442128-6442147 | Msa1175160:intron | 45.0% | |
| AGTCTCAGTCTCCAAAGTTG+CGG | + | chr8_1:6442142-6442161 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | chr8_1:6442187-6442206 | None:intergenic | 45.0% | |
| AGGAAAGAGTAATCGTTCCG+AGG | - | chr8_1:6442227-6442246 | Msa1175160:intron | 45.0% | |
| ACAATTGCCAGTGAAAAGGC+TGG | - | chr8_1:6442315-6442334 | Msa1175160:CDS | 45.0% | |
| GAAACTGGTTACTGTGGGTA+TGG | - | chr8_1:6442426-6442445 | Msa1175160:intron | 45.0% | |
| AACTGGTTACTGTGGGTATG+GGG | - | chr8_1:6442428-6442447 | Msa1175160:intron | 45.0% | |
| GAGGTGATTACAAATCTGGG+TGG | - | chr8_1:6442475-6442494 | Msa1175160:intron | 45.0% | |
| TTACAAATCTGGGTGGCAGA+TGG | - | chr8_1:6442482-6442501 | Msa1175160:intron | 45.0% | |
| ATGAAGCTGAGAAAGCAAGG+AGG | - | chr8_1:6442517-6442536 | Msa1175160:intron | 45.0% | |
| GAAAGCAAGGAGGATGAGAT+TGG | - | chr8_1:6442527-6442546 | Msa1175160:intron | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | chr8_1:6442639-6442658 | None:intergenic | 45.0% | |
| ACAGAAGTAGTGCTTGCACT+TGG | + | chr8_1:6442661-6442680 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | chr8_1:6442677-6442696 | Msa1175160:intron | 45.0% |
| TAAAAATGCCAAGCGTAGGC+TGG | + | chr8_1:6442832-6442851 | None:intergenic | 45.0% | |
| GATTCGAAAGAAGATGGCTG+AGG | - | chr8_1:6442865-6442884 | Msa1175160:intron | 45.0% | |
| ! | TGTGGCTTGTGTGGTAAGCT+TGG | - | chr8_1:6441019-6441038 | Msa1175160:CDS | 50.0% |
| GGTATACCGATCGATGAAGC+TGG | + | chr8_1:6441286-6441305 | None:intergenic | 50.0% | |
| GCATCAAAACCAAGTTGCCG+CGG | - | chr8_1:6441331-6441350 | Msa1175160:CDS | 50.0% | |
| TGAGGATGGCTCGAACAATG+AGG | - | chr8_1:6441945-6441964 | Msa1175160:CDS | 50.0% | |
| CAAGCGACAGAGAGTCTCAA+AGG | - | chr8_1:6442207-6442226 | Msa1175160:intron | 50.0% | |
| ATTGCCAGTGAAAAGGCTGG+TGG | - | chr8_1:6442318-6442337 | Msa1175160:CDS | 50.0% | |
| TTGCCAGTGAAAAGGCTGGT+GGG | - | chr8_1:6442319-6442338 | Msa1175160:CDS | 50.0% | |
| GTGGCAGATGGAGAAGGAAT+GGG | - | chr8_1:6442494-6442513 | Msa1175160:intron | 50.0% | |
| GGGATGAAGCTGAGAAAGCA+AGG | - | chr8_1:6442514-6442533 | Msa1175160:intron | 50.0% | |
| TGCTTGCACTTGGTTGAGAC+AGG | + | chr8_1:6442651-6442670 | None:intergenic | 50.0% | |
| ! | TGTGGCTTGTGTGGTAAGCT+TGG | - | chr8_1:6441019-6441038 | Msa1175160:CDS | 50.0% |
| GGTATACCGATCGATGAAGC+TGG | + | chr8_1:6441286-6441305 | None:intergenic | 50.0% | |
| GCATCAAAACCAAGTTGCCG+CGG | - | chr8_1:6441331-6441350 | Msa1175160:CDS | 50.0% | |
| TGAGGATGGCTCGAACAATG+AGG | - | chr8_1:6441945-6441964 | Msa1175160:CDS | 50.0% | |
| CAAGCGACAGAGAGTCTCAA+AGG | - | chr8_1:6442207-6442226 | Msa1175160:intron | 50.0% | |
| ATTGCCAGTGAAAAGGCTGG+TGG | - | chr8_1:6442318-6442337 | Msa1175160:CDS | 50.0% | |
| TTGCCAGTGAAAAGGCTGGT+GGG | - | chr8_1:6442319-6442338 | Msa1175160:CDS | 50.0% | |
| GTGGCAGATGGAGAAGGAAT+GGG | - | chr8_1:6442494-6442513 | Msa1175160:intron | 50.0% | |
| GGGATGAAGCTGAGAAAGCA+AGG | - | chr8_1:6442514-6442533 | Msa1175160:intron | 50.0% | |
| TGCTTGCACTTGGTTGAGAC+AGG | + | chr8_1:6442651-6442670 | None:intergenic | 50.0% | |
| ! | TTGCTGTCGTGTGGCTTGTG+TGG | - | chr8_1:6441010-6441029 | Msa1175160:CDS | 55.0% |
| ! | AGAGCTCTTTGAAGAGGCGG+TGG | + | chr8_1:6442028-6442047 | None:intergenic | 55.0% |
| ! | GGCAGAGCTCTTTGAAGAGG+CGG | + | chr8_1:6442031-6442050 | None:intergenic | 55.0% |
| ! | TGACCCACCAGCCTTTTCAC+TGG | + | chr8_1:6442325-6442344 | None:intergenic | 55.0% |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | chr8_1:6442327-6442346 | Msa1175160:intron | 55.0% |
| ATGTGAGCTGAAGCCCGAAG+AGG | + | chr8_1:6442354-6442373 | None:intergenic | 55.0% | |
| ATCTGGGTGGCAGATGGAGA+AGG | - | chr8_1:6442488-6442507 | Msa1175160:intron | 55.0% | |
| GGTGGCAGATGGAGAAGGAA+TGG | - | chr8_1:6442493-6442512 | Msa1175160:intron | 55.0% | |
| ! | AGGAGGATGAGATTGGCTGC+AGG | - | chr8_1:6442534-6442553 | Msa1175160:intron | 55.0% |
| ! | GATGAGATTGGCTGCAGGTG+AGG | - | chr8_1:6442539-6442558 | Msa1175160:intron | 55.0% |
| TGCAGGTGAGGATGCAGAAG+AGG | - | chr8_1:6442551-6442570 | Msa1175160:intron | 55.0% | |
| AGGTGAGGATGCAGAAGAGG+AGG | - | chr8_1:6442554-6442573 | Msa1175160:intron | 55.0% | |
| GGTGAGGATGCAGAAGAGGA+GGG | - | chr8_1:6442555-6442574 | Msa1175160:intron | 55.0% | |
| ! | TTGCTGTCGTGTGGCTTGTG+TGG | - | chr8_1:6441010-6441029 | Msa1175160:CDS | 55.0% |
| ! | AGAGCTCTTTGAAGAGGCGG+TGG | + | chr8_1:6442028-6442047 | None:intergenic | 55.0% |
| ! | GGCAGAGCTCTTTGAAGAGG+CGG | + | chr8_1:6442031-6442050 | None:intergenic | 55.0% |
| ! | TGACCCACCAGCCTTTTCAC+TGG | + | chr8_1:6442325-6442344 | None:intergenic | 55.0% |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | chr8_1:6442327-6442346 | Msa1175160:intron | 55.0% |
| ATGTGAGCTGAAGCCCGAAG+AGG | + | chr8_1:6442354-6442373 | None:intergenic | 55.0% | |
| ATCTGGGTGGCAGATGGAGA+AGG | - | chr8_1:6442488-6442507 | Msa1175160:intron | 55.0% | |
| GGTGGCAGATGGAGAAGGAA+TGG | - | chr8_1:6442493-6442512 | Msa1175160:intron | 55.0% | |
| ! | AGGAGGATGAGATTGGCTGC+AGG | - | chr8_1:6442534-6442553 | Msa1175160:intron | 55.0% |
| ! | GATGAGATTGGCTGCAGGTG+AGG | - | chr8_1:6442539-6442558 | Msa1175160:intron | 55.0% |
| TGCAGGTGAGGATGCAGAAG+AGG | - | chr8_1:6442551-6442570 | Msa1175160:intron | 55.0% | |
| AGGTGAGGATGCAGAAGAGG+AGG | - | chr8_1:6442554-6442573 | Msa1175160:intron | 55.0% | |
| GGTGAGGATGCAGAAGAGGA+GGG | - | chr8_1:6442555-6442574 | Msa1175160:intron | 55.0% | |
| ! | ATGTGTTGGCCGCGGCAACT+TGG | + | chr8_1:6441343-6441362 | None:intergenic | 60.0% |
| ! | CGGAGAAGATGTGTTGGCCG+CGG | + | chr8_1:6441351-6441370 | None:intergenic | 60.0% |
| GTGGGTCACACGGTCCTCTT+CGG | - | chr8_1:6442337-6442356 | Msa1175160:intron | 60.0% | |
| TGGGTCACACGGTCCTCTTC+GGG | - | chr8_1:6442338-6442357 | Msa1175160:intron | 60.0% | |
| GTCTGCAACCAGCCTACGCT+TGG | - | chr8_1:6442821-6442840 | Msa1175160:intron | 60.0% | |
| ! | ATGTGTTGGCCGCGGCAACT+TGG | + | chr8_1:6441343-6441362 | None:intergenic | 60.0% |
| ! | CGGAGAAGATGTGTTGGCCG+CGG | + | chr8_1:6441351-6441370 | None:intergenic | 60.0% |
| GTGGGTCACACGGTCCTCTT+CGG | - | chr8_1:6442337-6442356 | Msa1175160:intron | 60.0% | |
| TGGGTCACACGGTCCTCTTC+GGG | - | chr8_1:6442338-6442357 | Msa1175160:intron | 60.0% | |
| GTCTGCAACCAGCCTACGCT+TGG | - | chr8_1:6442821-6442840 | Msa1175160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 6440672 | 6442986 | 6440672 | ID=Msa1175160;Name=Msa1175160 |
| chr8_1 | mRNA | 6440672 | 6442986 | 6440672 | ID=Msa1175160-mRNA-1;Parent=Msa1175160;Name=Msa1175160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|0.6|1|1|5|91|369 |
| chr8_1 | exon | 6440672 | 6440864 | 6440672 | ID=Msa1175160-mRNA-1:exon:2288;Parent=Msa1175160-mRNA-1 |
| chr8_1 | exon | 6440960 | 6441777 | 6440960 | ID=Msa1175160-mRNA-1:exon:2287;Parent=Msa1175160-mRNA-1 |
| chr8_1 | exon | 6441900 | 6441975 | 6441900 | ID=Msa1175160-mRNA-1:exon:2286;Parent=Msa1175160-mRNA-1 |
| chr8_1 | exon | 6442282 | 6442338 | 6442282 | ID=Msa1175160-mRNA-1:exon:2285;Parent=Msa1175160-mRNA-1 |
| chr8_1 | exon | 6442930 | 6442986 | 6442930 | ID=Msa1175160-mRNA-1:exon:2284;Parent=Msa1175160-mRNA-1 |
| chr8_1 | CDS | 6442930 | 6442986 | 6442930 | ID=Msa1175160-mRNA-1:cds;Parent=Msa1175160-mRNA-1 |
| chr8_1 | CDS | 6442282 | 6442338 | 6442282 | ID=Msa1175160-mRNA-1:cds;Parent=Msa1175160-mRNA-1 |
| chr8_1 | CDS | 6441900 | 6441975 | 6441900 | ID=Msa1175160-mRNA-1:cds;Parent=Msa1175160-mRNA-1 |
| chr8_1 | CDS | 6440960 | 6441777 | 6440960 | ID=Msa1175160-mRNA-1:cds;Parent=Msa1175160-mRNA-1 |
| chr8_1 | CDS | 6440763 | 6440864 | 6440763 | ID=Msa1175160-mRNA-1:cds;Parent=Msa1175160-mRNA-1 |
| chr8_1 | three_prime_UTR | 6440672 | 6440762 | 6440672 | ID=Msa1175160-mRNA-1:three_prime_utr;Parent=Msa1175160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
