AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175460 MtrunA17_Chr8g0345671 87.438 406 44 3 1 405 1 400 0.0 711
Msa1175460 MtrunA17_Chr8g0345691 63.470 438 106 8 1 403 1 419 0.0 512
Msa1175460 MtrunA17_Chr8g0345731 65.789 152 47 3 8 154 22 173 4.00e-66 208
Msa1175460 MtrunA17_Chr8g0345711 63.636 154 53 2 1 151 1 154 2.56e-65 206
Msa1175460 MtrunA17_Chr8g0345721 56.571 175 47 1 1 146 26 200 1.93e-61 197
Msa1175460 MtrunA17_Chr8g0345741 64.493 138 49 0 21 158 2 139 1.59e-60 193
Msa1175460 MtrunA17_Chr3g0128111 55.030 169 63 6 13 175 45 206 1.72e-52 175
Msa1175460 MtrunA17_Chr5g0428991 57.233 159 59 4 8 160 23 178 1.04e-51 183
Msa1175460 MtrunA17_Chr3g0128151 55.556 162 63 5 8 163 20 178 5.47e-51 180
Msa1175460 MtrunA17_Chr8g0345701 56.954 151 47 5 10 146 7 153 3.56e-48 162
Msa1175460 MtrunA17_Chr6g0481091 52.597 154 64 5 10 157 6 156 1.03e-44 155
Msa1175460 MtrunA17_Chr2g0309891 48.795 166 72 5 10 165 6 168 9.03e-44 155
Msa1175460 MtrunA17_Chr5g0400461 49.398 166 71 5 10 165 6 168 6.66e-43 153
Msa1175460 MtrunA17_Chr5g0433781 51.613 155 66 4 10 158 6 157 1.39e-42 158
Msa1175460 MtrunA17_Chr3g0109821 46.154 182 88 5 10 184 6 184 3.27e-42 157
Msa1175460 MtrunA17_Chr1g0197361 51.656 151 66 3 13 158 11 159 4.75e-41 153
Msa1175460 MtrunA17_Chr7g0252971 42.708 192 81 7 6 175 4 188 8.09e-41 147
Msa1175460 MtrunA17_Chr2g0318101 39.056 233 126 8 10 237 15 236 1.46e-40 147
Msa1175460 MtrunA17_Chr4g0054791 46.154 182 86 6 10 183 6 183 6.31e-40 144
Msa1175460 MtrunA17_Chr4g0047841 48.276 145 71 3 6 149 11 152 4.22e-39 143
Msa1175460 MtrunA17_Chr3g0130731 48.750 160 67 6 10 160 7 160 2.23e-38 140
Msa1175460 MtrunA17_Chr3g0139331 49.020 153 71 5 10 158 11 160 7.09e-38 140
Msa1175460 MtrunA17_Chr3g0130101 47.682 151 70 5 13 157 10 157 1.04e-37 139
Msa1175460 MtrunA17_Chr5g0398971 43.429 175 89 6 3 171 2 172 1.18e-37 139
Msa1175460 MtrunA17_Chr4g0018391 47.205 161 73 7 3 157 2 156 1.93e-37 139
Msa1175460 MtrunA17_Chr3g0092671 49.677 155 71 3 9 158 4 156 2.90e-37 142
Msa1175460 MtrunA17_Chr2g0321741 34.828 290 159 11 31 305 13 287 4.81e-37 138
Msa1175460 MtrunA17_Chr3g0124761 46.497 157 69 5 10 157 7 157 5.51e-37 136
Msa1175460 MtrunA17_Chr8g0384721 44.848 165 67 6 10 160 7 161 7.07e-37 135
Msa1175460 MtrunA17_Chr7g0214071 43.636 165 83 4 10 170 15 173 8.21e-37 134
Msa1175460 MtrunA17_Chr2g0318081 46.835 158 65 6 10 157 16 164 8.30e-37 137
Msa1175460 MtrunA17_Chr4g0042561 45.679 162 65 6 10 157 9 161 2.91e-36 133
Msa1175460 MtrunA17_Chr4g0017921 48.026 152 72 5 10 157 8 156 4.80e-36 135
Msa1175460 MtrunA17_Chr2g0316971 53.846 130 56 3 9 137 22 148 5.03e-36 135
Msa1175460 MtrunA17_Chr6g0484441 45.963 161 76 6 10 164 5 160 6.18e-36 134
Msa1175460 MtrunA17_Chr4g0056541 45.000 160 78 6 3 157 2 156 8.61e-36 134
Msa1175460 MtrunA17_Chr8g0385991 43.590 156 72 4 10 154 14 164 2.13e-35 130
Msa1175460 MtrunA17_Chr1g0197351 48.408 157 66 4 13 157 45 198 2.88e-35 135
Msa1175460 MtrunA17_Chr8g0359921 44.311 167 72 6 10 164 14 171 2.95e-35 132
Msa1175460 MtrunA17_Chr8g0364791 43.046 151 77 4 13 157 9 156 5.21e-35 134
Msa1175460 MtrunA17_Chr1g0147421 45.752 153 77 4 10 158 27 177 5.84e-35 132
Msa1175460 MtrunA17_Chr8g0372121 42.169 166 85 6 10 167 6 168 1.05e-34 130
Msa1175460 MtrunA17_Chr3g0091921 46.497 157 71 6 10 158 16 167 1.11e-34 130
Msa1175460 MtrunA17_Chr2g0326361 43.210 162 71 5 11 158 15 169 1.40e-34 130
Msa1175460 MtrunA17_Chr2g0309331 39.801 201 103 8 10 195 10 207 2.33e-34 130
Msa1175460 MtrunA17_Chr4g0060931 45.399 163 74 7 10 162 17 174 3.78e-34 130
Msa1175460 MtrunA17_Chr5g0405211 45.455 154 74 6 10 157 8 157 4.23e-34 130
Msa1175460 MtrunA17_Chr1g0183741 39.487 195 96 7 10 202 10 184 4.50e-34 127
Msa1175460 MtrunA17_Chr4g0076731 44.937 158 75 6 7 158 51 202 6.07e-34 131
Msa1175460 MtrunA17_Chr8g0361731 41.250 160 76 4 13 157 17 173 7.02e-34 130
Msa1175460 MtrunA17_Chr5g0417791 42.442 172 76 7 10 167 3 165 1.44e-33 126
Msa1175460 MtrunA17_Chr7g0263931 40.244 164 83 6 6 157 5 165 1.59e-33 127
Msa1175460 MtrunA17_Chr1g0200561 35.470 234 133 10 10 235 19 242 2.37e-33 127
Msa1175460 MtrunA17_Chr7g0261411 44.218 147 77 4 10 154 10 153 2.79e-33 126
Msa1175460 MtrunA17_Chr1g0201021 51.034 145 62 5 13 156 22 158 6.78e-33 130
Msa1175460 MtrunA17_Chr2g0312321 43.226 155 74 5 10 157 11 158 9.83e-33 125
Msa1175460 MtrunA17_Chr4g0026141 42.581 155 77 4 11 154 6 159 2.66e-32 122
Msa1175460 MtrunA17_Chr7g0217721 54.331 127 52 5 12 137 21 142 3.18e-32 124
Msa1175460 MtrunA17_Chr6g0453451 46.405 153 70 5 10 161 20 161 4.16e-32 124
Msa1175460 MtrunA17_Chr8g0384201 41.722 151 79 4 13 157 9 156 4.95e-32 126
Msa1175460 MtrunA17_Chr7g0217711 52.756 127 54 5 12 137 21 142 6.71e-32 119
Msa1175460 MtrunA17_Chr3g0144271 47.794 136 66 3 10 142 23 156 7.28e-32 125
Msa1175460 MtrunA17_Chr5g0417001 39.375 160 80 4 13 158 17 173 9.35e-32 124
Msa1175460 MtrunA17_Chr7g0253011 48.092 131 62 4 10 137 17 144 1.28e-31 124
Msa1175460 MtrunA17_Chr6g0453131 40.994 161 76 5 13 158 18 174 1.79e-31 123
Msa1175460 MtrunA17_Chr8g0346001 40.642 187 89 7 10 180 15 195 1.95e-31 124
Msa1175460 MtrunA17_Chr4g0038751 43.243 148 79 4 13 158 18 162 4.83e-31 120
Msa1175460 MtrunA17_Chr6g0461661 46.565 131 64 4 10 138 18 144 7.61e-31 121
Msa1175460 MtrunA17_Chr2g0311661 39.286 168 80 6 10 157 20 185 2.53e-30 118
Msa1175460 MtrunA17_Chr2g0311651 38.202 178 88 6 10 167 21 196 2.61e-30 118
Msa1175460 MtrunA17_Chr2g0321631 42.308 156 77 5 11 154 5 159 4.90e-30 116
Msa1175460 MtrunA17_Chr3g0131911 37.500 168 86 5 10 163 14 176 7.86e-29 112
Msa1175460 MtrunA17_Chr5g0442771 45.669 127 64 4 13 137 21 144 2.11e-27 110
Msa1175460 MtrunA17_Chr7g0266701 35.976 164 90 5 10 159 4 166 3.45e-24 100
Msa1175460 MtrunA17_Chr8g0384351 33.939 165 88 6 10 173 10 154 4.88e-19 84.3
Msa1175460 MtrunA17_Chr4g0050701 29.545 176 97 6 10 171 11 173 6.28e-18 81.3
Msa1175460 MtrunA17_Chr3g0113001 40.310 129 63 6 61 177 13 139 1.16e-16 80.1
Msa1175460 MtrunA17_Chr7g0243371 42.857 84 46 2 56 137 6 89 2.33e-16 74.7
Msa1175460 MtrunA17_Chr3g0130321 32.919 161 83 6 10 154 7 158 1.36e-15 75.1
Msa1175460 MtrunA17_Chr7g0251651 28.743 167 110 5 10 172 18 179 2.86e-14 71.2
Msa1175460 MtrunA17_Chr3g0113011 64.583 48 16 1 11 58 20 66 4.98e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175460 AT4G35580.3 58.491 159 57 4 10 162 9 164 2.12e-55 191
Msa1175460 AT4G35580.2 58.491 159 57 4 10 162 9 164 2.37e-55 191
Msa1175460 AT4G35580.1 58.491 159 57 4 10 162 9 164 2.48e-55 191
Msa1175460 AT1G33060.1 57.143 154 57 4 10 157 24 174 2.00e-51 182
Msa1175460 AT1G33060.2 57.143 154 57 4 10 157 24 174 2.15e-51 182
Msa1175460 AT3G49530.2 53.086 162 68 4 10 165 13 172 8.21e-51 176
Msa1175460 AT4G01550.1 50.000 174 82 3 12 183 6 176 2.32e-50 176
Msa1175460 AT3G49530.1 53.086 162 68 4 10 165 13 172 3.14e-50 176
Msa1175460 AT5G24590.2 53.205 156 65 4 10 159 13 166 7.76e-49 172
Msa1175460 AT3G17730.1 49.102 167 76 4 10 170 6 169 1.82e-45 157
Msa1175460 AT5G17260.1 52.532 158 59 5 10 157 6 157 2.97e-45 163
Msa1175460 AT4G17980.1 48.734 158 72 3 10 159 6 162 1.19e-44 155
Msa1175460 AT4G17980.2 48.734 158 72 3 10 159 6 162 3.06e-44 155
Msa1175460 AT3G03200.1 52.532 158 59 5 10 157 6 157 3.29e-44 160
Msa1175460 AT4G01520.1 38.532 218 120 6 11 216 5 220 2.64e-43 153
Msa1175460 AT4G01540.4 38.710 217 119 6 12 216 6 220 3.99e-42 152
Msa1175460 AT1G65910.1 51.220 164 69 5 10 165 6 166 5.58e-42 156
Msa1175460 AT4G01540.2 39.286 224 108 8 12 216 6 220 8.83e-42 152
Msa1175460 AT4G01540.3 38.710 217 119 6 12 216 6 220 9.62e-42 152
Msa1175460 AT4G01540.1 39.286 224 108 8 12 216 6 220 1.64e-41 152
Msa1175460 AT5G46590.1 47.305 167 79 4 10 169 6 170 2.06e-41 148
Msa1175460 AT3G10480.1 50.000 152 66 4 13 157 30 178 4.17e-41 151
Msa1175460 AT3G10490.1 49.342 152 67 4 13 157 30 178 9.64e-41 145
Msa1175460 AT3G10480.2 49.669 151 67 4 13 157 30 177 2.24e-40 149
Msa1175460 AT1G02230.1 47.059 153 76 4 11 160 4 154 3.46e-40 147
Msa1175460 AT3G10490.2 49.342 152 67 4 13 157 30 178 9.46e-40 147
Msa1175460 AT3G04070.2 38.326 227 108 8 1 209 1 213 1.28e-38 142
Msa1175460 AT3G15500.1 43.605 172 78 6 10 171 14 176 3.76e-38 140
Msa1175460 AT1G54330.1 50.331 151 69 4 10 157 6 153 6.21e-38 139
Msa1175460 AT1G52890.1 44.318 176 79 6 10 175 14 180 6.45e-38 139
Msa1175460 AT1G12260.2 45.963 161 75 7 3 157 2 156 7.16e-38 140
Msa1175460 AT5G09330.5 50.331 151 66 4 13 157 9 156 9.01e-38 143
Msa1175460 AT5G09330.2 50.331 151 66 4 13 157 9 156 9.01e-38 143
Msa1175460 AT5G09330.4 50.331 151 66 4 13 157 9 156 9.01e-38 143
Msa1175460 AT5G09330.3 50.331 151 66 4 13 157 9 156 9.01e-38 143
Msa1175460 AT5G09330.1 50.331 151 66 4 13 157 9 156 9.01e-38 143
Msa1175460 AT5G08790.1 46.541 159 68 6 10 157 7 159 9.98e-38 138
Msa1175460 AT5G46590.2 50.725 138 65 3 10 146 6 141 1.40e-37 137
Msa1175460 AT1G01720.1 45.570 158 70 5 10 157 7 158 1.51e-37 138
Msa1175460 AT1G12260.1 45.963 161 75 7 3 157 2 156 1.91e-37 140
Msa1175460 AT2G27300.1 40.513 195 106 6 13 203 17 205 2.11e-37 139
Msa1175460 AT4G27410.2 46.203 158 66 6 10 157 14 162 2.13e-37 137
Msa1175460 AT3G04070.1 48.936 141 65 4 1 137 1 138 5.86e-37 138
Msa1175460 AT3G10500.1 51.316 152 65 5 13 158 12 160 7.99e-37 141
Msa1175460 AT5G66300.1 46.753 154 73 5 10 157 12 162 8.10e-37 136
Msa1175460 AT3G15510.1 40.196 204 92 7 14 190 21 221 1.07e-36 137
Msa1175460 AT5G04410.1 50.000 152 67 4 13 158 12 160 1.13e-36 141
Msa1175460 AT5G53950.1 54.198 131 56 3 8 137 15 142 1.75e-36 137
Msa1175460 AT3G44290.2 46.250 160 73 7 1 159 11 158 1.78e-36 133
Msa1175460 AT1G32510.1 44.512 164 78 4 8 159 4 166 1.79e-36 135
Msa1175460 AT1G62700.1 41.935 186 95 7 3 183 2 179 1.99e-36 137
Msa1175460 AT1G62700.2 41.935 186 95 7 3 183 2 179 1.99e-36 137
Msa1175460 AT3G18400.1 40.201 199 106 6 10 200 5 198 2.09e-36 135
Msa1175460 AT2G24430.2 47.097 155 74 4 10 159 16 167 3.14e-36 135
Msa1175460 AT2G24430.1 47.097 155 74 4 10 159 16 167 3.14e-36 135
Msa1175460 AT5G39610.1 45.455 165 77 6 7 163 17 176 4.97e-36 134
Msa1175460 AT1G02250.1 44.805 154 80 4 11 161 4 155 9.22e-36 135
Msa1175460 AT3G04060.1 34.859 284 142 12 10 264 20 289 1.61e-35 134
Msa1175460 AT1G69490.1 45.570 158 71 7 10 157 9 161 1.65e-35 132
Msa1175460 AT5G63790.1 35.662 272 147 9 10 269 50 305 1.86e-35 133
Msa1175460 AT1G61110.1 44.379 169 72 6 7 157 13 177 1.94e-35 133
Msa1175460 AT5G63790.2 35.662 272 147 9 10 269 60 315 2.08e-35 133
Msa1175460 AT5G64060.1 46.753 154 67 5 13 157 9 156 2.98e-35 133
Msa1175460 AT5G62380.2 45.161 155 75 6 9 157 6 156 3.35e-35 133
Msa1175460 AT5G62380.1 45.161 155 75 6 9 157 6 156 3.35e-35 133
Msa1175460 AT3G44290.1 46.250 160 73 7 1 159 11 158 3.61e-35 132
Msa1175460 AT5G61430.1 46.497 157 71 7 10 158 16 167 5.06e-35 132
Msa1175460 AT5G22290.1 47.333 150 69 7 13 159 24 166 5.50e-35 132
Msa1175460 AT1G71930.2 44.444 153 77 5 10 157 9 158 6.52e-35 132
Msa1175460 AT1G71930.1 44.444 153 77 5 10 157 9 158 6.52e-35 132
Msa1175460 AT3G29035.1 52.713 129 55 5 10 137 24 147 6.91e-35 131
Msa1175460 AT4G27410.3 42.775 173 67 7 10 157 14 179 1.31e-34 130
Msa1175460 AT5G04395.1 42.405 158 77 4 1 145 19 175 1.57e-34 127
Msa1175460 AT3G10480.3 41.622 185 65 6 13 157 30 211 1.85e-34 134
Msa1175460 AT4G10350.1 46.452 155 73 5 10 157 9 160 1.86e-34 130
Msa1175460 AT2G17040.1 45.946 148 75 4 13 158 9 153 2.00e-34 129
Msa1175460 AT1G33280.1 46.711 152 74 5 10 157 8 156 2.20e-34 130
Msa1175460 AT3G15170.1 51.163 129 59 3 10 137 20 145 2.21e-34 130
Msa1175460 AT5G07680.2 46.154 156 71 6 10 157 3 153 3.32e-34 129
Msa1175460 AT5G07680.1 52.713 129 55 5 10 137 17 140 3.37e-34 130
Msa1175460 AT1G34190.1 47.742 155 66 5 13 158 19 167 3.82e-34 134
Msa1175460 AT2G33480.2 48.052 154 64 6 10 157 15 158 5.23e-34 127
Msa1175460 AT5G39820.1 46.715 137 69 3 13 148 23 156 5.91e-34 129
Msa1175460 AT1G76420.1 44.156 154 76 5 10 157 22 171 6.55e-34 129
Msa1175460 AT2G18060.3 42.135 178 89 7 10 177 9 182 6.66e-34 130
Msa1175460 AT2G18060.1 42.135 178 89 7 10 177 9 182 6.66e-34 130
Msa1175460 AT2G33480.1 46.753 154 68 5 10 157 15 160 7.25e-34 127
Msa1175460 AT2G02450.1 40.782 179 88 6 13 187 54 218 8.84e-34 130
Msa1175460 AT2G02450.2 40.331 181 90 6 13 189 54 220 1.56e-33 130
Msa1175460 AT1G26870.1 38.000 200 92 6 13 183 19 215 2.69e-33 129
Msa1175460 AT1G77450.1 35.417 240 118 10 11 235 11 228 2.72e-33 125
Msa1175460 AT1G34180.3 52.381 126 56 3 13 137 19 141 3.34e-33 129
Msa1175460 AT4G36160.1 44.156 154 76 6 10 157 10 159 3.86e-33 128
Msa1175460 AT4G36160.3 44.156 154 76 6 10 157 10 159 3.86e-33 128
Msa1175460 AT4G36160.2 44.156 154 76 6 10 157 14 163 4.35e-33 128
Msa1175460 AT1G56010.2 37.129 202 96 5 10 184 19 216 6.88e-33 126
Msa1175460 AT1G34180.1 42.268 194 90 8 13 195 19 201 7.04e-33 130
Msa1175460 AT5G13180.1 42.484 153 77 4 10 157 14 160 7.60e-33 124
Msa1175460 AT2G43000.1 37.949 195 102 8 13 193 21 210 7.96e-32 122
Msa1175460 AT5G18270.2 50.388 129 59 4 10 137 21 145 9.54e-32 123
Msa1175460 AT3G12910.1 40.361 166 76 5 13 158 24 186 9.73e-32 122
Msa1175460 AT1G01010.1 44.231 156 77 4 12 159 5 158 1.36e-31 125
Msa1175460 AT1G79580.3 44.516 155 74 6 10 157 17 166 1.60e-31 123
Msa1175460 AT1G79580.5 44.516 155 74 6 10 157 17 166 1.60e-31 123
Msa1175460 AT1G79580.4 44.516 155 74 6 10 157 17 166 1.60e-31 123
Msa1175460 AT1G79580.2 44.516 155 74 6 10 157 17 166 1.60e-31 123
Msa1175460 AT1G79580.1 44.516 155 74 6 10 157 17 166 1.60e-31 123
Msa1175460 AT5G18270.1 49.612 129 60 4 10 137 21 145 2.31e-31 122
Msa1175460 AT2G46770.1 34.052 232 118 9 10 213 16 240 1.23e-30 121
Msa1175460 AT3G61910.1 34.956 226 116 9 10 214 11 226 2.78e-30 119
Msa1175460 AT3G04420.2 41.722 151 84 3 11 159 4 152 3.53e-30 118
Msa1175460 AT3G04420.1 41.722 151 84 4 11 159 4 152 4.77e-30 119
Msa1175460 AT1G34180.4 47.826 138 56 4 13 137 19 153 6.09e-30 120
Msa1175460 AT1G52880.1 46.012 163 63 6 14 157 21 177 7.05e-30 118
Msa1175460 AT1G34180.2 39.806 206 90 9 13 195 19 213 1.02e-29 121
Msa1175460 AT4G28530.1 39.157 166 82 4 10 158 10 173 2.06e-29 117
Msa1175460 AT1G32770.1 41.566 166 75 7 10 157 16 177 2.14e-29 117
Msa1175460 AT3G12977.1 37.433 187 91 7 10 182 18 192 5.84e-29 114
Msa1175460 AT5G22380.1 41.026 156 80 5 10 154 5 159 1.20e-28 112
Msa1175460 AT1G02220.1 41.781 146 80 4 11 155 4 145 4.91e-28 114
Msa1175460 AT1G32870.2 45.455 154 71 6 13 158 13 161 7.00e-26 109
Msa1175460 AT1G32870.1 45.455 154 71 6 13 158 13 161 7.16e-26 109
Msa1175460 AT1G32870.3 45.455 154 71 6 13 158 49 197 1.04e-25 109
Msa1175460 AT3G44350.2 37.821 156 87 4 12 158 7 161 1.89e-25 103
Msa1175460 AT3G44350.1 40.909 132 74 3 12 140 7 137 9.23e-25 99.8
Msa1175460 AT3G04430.1 40.441 136 65 5 16 139 6 137 3.24e-20 88.6
Msa1175460 AT4G28530.2 43.119 109 45 2 10 103 10 116 6.07e-19 87.4
Msa1175460 AT4G10350.2 42.857 105 52 3 59 157 11 113 1.58e-18 85.9
Msa1175460 AT5G64530.2 36.923 130 64 5 10 137 3 116 2.04e-18 82.4
Msa1175460 AT5G61430.2 43.396 106 50 5 61 158 1 104 2.95e-18 84.7
Msa1175460 AT5G64530.1 36.923 130 64 5 10 137 3 116 6.15e-18 81.6
Msa1175460 AT1G56010.1 35.417 144 64 4 68 184 8 149 6.75e-18 83.2
Msa1175460 AT3G12977.2 33.939 165 82 7 68 210 20 179 7.72e-18 82.4
Msa1175460 AT2G33480.3 44.898 98 46 3 66 157 8 103 2.45e-17 80.5
Msa1175460 AT3G56530.1 35.333 150 87 7 11 154 53 198 4.15e-14 73.2
Msa1175460 AT2G43000.2 35.338 133 70 6 75 193 2 132 2.16e-13 68.9
Msa1175460 AT3G55210.1 32.298 161 88 9 10 154 11 166 3.12e-12 67.0

Find 66 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTTCGAGATGATTTC+GGG 0.227385 8_1:+6804761 Msa1175460:CDS
AGAGGTACTGAAAATGTTAT+TGG 0.269464 8_1:+6803752 Msa1175460:CDS
ACAAATACGCAAATAGTAAA+AGG 0.269504 8_1:+6803666 Msa1175460:CDS
GCATCATTTCGAGATGATTT+CGG 0.275502 8_1:+6804760 Msa1175460:CDS
TGGTCTTGACCGTAAGATTA+AGG 0.284539 8_1:+6803727 Msa1175460:CDS
GAATATGGAACCAATGTTTC+AGG 0.286511 8_1:+6804221 Msa1175460:CDS
TTTACAGTGTGGCAATGTTC+TGG 0.292487 8_1:+6804690 Msa1175460:intron
GCAGAGTTCGTTTGAAACTA+TGG 0.297255 8_1:+6804371 Msa1175460:CDS
CTCCTGGTGTTAATAGCAAC+TGG 0.300575 8_1:+6803810 Msa1175460:CDS
TACTATAATGGTTGTGCTCC+TGG 0.345726 8_1:+6803794 Msa1175460:CDS
AAAACACTTGTGTACTATAA+TGG 0.357000 8_1:+6803782 Msa1175460:CDS
GACATGGTGGTGGTTGGTCT+TGG 0.361614 8_1:-6804898 None:intergenic
CATATCAATGTGTCCACTTT+CGG 0.371587 8_1:-6804349 None:intergenic
TCGTTGAGAATGATTTACTA+TGG 0.400930 8_1:+6804510 Msa1175460:CDS
CTTGTTGAACATCCTAGTTC+AGG 0.403607 8_1:+6804727 Msa1175460:CDS
GAGGTACTGAAAATGTTATT+GGG 0.407217 8_1:+6803753 Msa1175460:CDS
TACCTTGCCAGAAAAGAATA+TGG 0.417346 8_1:+6804206 Msa1175460:CDS
GAAGGACACAGTGTGGATAC+TGG 0.428296 8_1:+6803696 Msa1175460:CDS
TGATGAGGTTCCTGAAACAT+TGG 0.441580 8_1:-6804231 None:intergenic
GACCGTAAGATTAAGGTTAG+AGG 0.442904 8_1:+6803734 Msa1175460:CDS
TGGTTGGTCTTGGATGATAC+TGG 0.447272 8_1:-6804888 None:intergenic
TGTTTGCAAGTTCGAACCTT+GGG 0.454947 8_1:+6803498 Msa1175460:CDS
AATGTTTCAGGAACCTCATC+AGG 0.459890 8_1:+6804233 Msa1175460:CDS
CTCGGACTGGACAGGAAAGC+TGG 0.467178 8_1:-6804487 None:intergenic
TTGTTTCTTCTTAGAGTGGA+AGG 0.468867 8_1:-6804862 None:intergenic
TCATTCTCAACGACTCGGAC+TGG 0.469733 8_1:-6804500 None:intergenic
CCTCATAACTATGTTCCTGT+TGG 0.475870 8_1:+6803373 Msa1175460:CDS
TTCGTTTGAAACTATGGAAG+AGG 0.492535 8_1:+6804377 Msa1175460:CDS
TTTACAAGCTCTTCATCTGT+TGG 0.494683 8_1:-6803409 None:intergenic
GGACGGAATCTGAATCCAAC+AGG 0.495067 8_1:-6803388 None:intergenic
TACCTCTAACCTTAATCTTA+CGG 0.495515 8_1:-6803736 None:intergenic
GAAAATCATGAAACAGTTGA+AGG 0.499163 8_1:+6804080 Msa1175460:CDS
TCGGAACTCATGTGTCTACT+TGG 0.499283 8_1:-6804053 None:intergenic
TTCAATCTCTGAAAATGAGA+TGG 0.499943 8_1:+6804293 Msa1175460:CDS
GACTGGTATGTCGACGAGAA+AGG 0.509371 8_1:-6804270 None:intergenic
CCAACAGGAACATAGTTATG+AGG 0.518146 8_1:-6803373 None:intergenic
TTCGAACCTTGGGACTTACC+AGG 0.522061 8_1:+6803508 Msa1175460:CDS
TAATTGTTTCAGGTAATAAG+TGG 0.529271 8_1:+6804183 Msa1175460:intron
ATCAATTCAATGTTAAATGA+CGG 0.532646 8_1:+6804411 Msa1175460:CDS
GATAGAATGATATGTGATGA+AGG 0.532647 8_1:+6804026 Msa1175460:CDS
GAAGTATCTTTATCGAACTC+AGG 0.533769 8_1:+6804315 Msa1175460:CDS
TGCTGAATTAGTCTCTATGC+CGG 0.535468 8_1:+6804548 Msa1175460:CDS
GTTATTGTTTCTTCTTAGAG+TGG 0.539752 8_1:-6804866 None:intergenic
CTCAACGACTCGGACTGGAC+AGG 0.555897 8_1:-6804495 None:intergenic
CAAGCTCTTCATCTGTTGGA+CGG 0.560584 8_1:-6803405 None:intergenic
CAATGTTCTGGATACTTCAA+CGG 0.563840 8_1:+6804702 Msa1175460:CDS
ACAAACCTGGTTATCATCAA+AGG 0.564326 8_1:-6803858 None:intergenic
TACCACCTTTGATGATAACC+AGG 0.567592 8_1:+6803853 Msa1175460:CDS
ATGTTTGCAAGTTCGAACCT+TGG 0.568862 8_1:+6803497 Msa1175460:CDS
ATAGTAAAAGGTTTAACAGA+AGG 0.579914 8_1:+6803678 Msa1175460:CDS
TCCTGGTGTTAATAGCAACT+GGG 0.584943 8_1:+6803811 Msa1175460:CDS
ATAGAATGATATGTGATGAA+GGG 0.590150 8_1:+6804027 Msa1175460:CDS
TGTGGATACTGGAAAGCCAC+TGG 0.602459 8_1:+6803707 Msa1175460:CDS
AGCTATAACATTGTTGACAG+TGG 0.605859 8_1:-6803467 None:intergenic
TTGCAATTGATCATCTCTAG+AGG 0.607895 8_1:-6804823 None:intergenic
ATGATTTACTATGGAAGCAG+TGG 0.614801 8_1:+6804519 Msa1175460:CDS
AATCTTACGGTCAAGACCAG+TGG 0.626820 8_1:-6803723 None:intergenic
ACCCAGTTGCTATTAACACC+AGG 0.638889 8_1:-6803812 None:intergenic
TAAAATCCGATGATCCCGAA+TGG 0.649145 8_1:+6803621 Msa1175460:CDS
ATCATTTCGAGATGATTTCG+GGG 0.650121 8_1:+6804762 Msa1175460:CDS
GTAAATCATTCTCAACGACT+CGG 0.660341 8_1:-6804505 None:intergenic
AACCTGGTTATCATCAAAGG+TGG 0.663139 8_1:-6803855 None:intergenic
TAGAATGATATGTGATGAAG+GGG 0.664187 8_1:+6804028 Msa1175460:CDS
TCATTTCGAGATGATTTCGG+GGG 0.671935 8_1:+6804763 Msa1175460:CDS
TTTGCGTATTTGTAATCACG+AGG 0.676971 8_1:-6803656 None:intergenic
TTTAACAGAAGGACACAGTG+TGG 0.694289 8_1:+6803689 Msa1175460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_1:6803552-6803571 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_1:6803553-6803572 None:intergenic 15.0%
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_1:6803552-6803571 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_1:6803553-6803572 None:intergenic 15.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_1:6803551-6803570 None:intergenic 20.0%
!! ATCAATTCAATGTTAAATGA+CGG + chr8_1:6804411-6804430 Msa1175460:CDS 20.0%
!! ATACACACTTTAATATCATT+TGG - chr8_1:6804595-6804614 None:intergenic 20.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_1:6803551-6803570 None:intergenic 20.0%
!! ATCAATTCAATGTTAAATGA+CGG + chr8_1:6804411-6804430 Msa1175460:CDS 20.0%
!! ATACACACTTTAATATCATT+TGG - chr8_1:6804595-6804614 None:intergenic 20.0%
! TATCTCAAAAACAAGTTACT+TGG + chr8_1:6803436-6803455 Msa1175460:CDS 25.0%
! TTATGAGAAAATAATGATGG+GGG - chr8_1:6803550-6803569 None:intergenic 25.0%
! ACAAATACGCAAATAGTAAA+AGG + chr8_1:6803666-6803685 Msa1175460:CDS 25.0%
! ATAGTAAAAGGTTTAACAGA+AGG + chr8_1:6803678-6803697 Msa1175460:CDS 25.0%
! AAAACACTTGTGTACTATAA+TGG + chr8_1:6803782-6803801 Msa1175460:CDS 25.0%
! GTTTACACTTTATGAGTATA+TGG + chr8_1:6803895-6803914 Msa1175460:intron 25.0%
!!! AAAAGTCCTCTAGAAAATTT+TGG - chr8_1:6803955-6803974 None:intergenic 25.0%
! ATAGAATGATATGTGATGAA+GGG + chr8_1:6804027-6804046 Msa1175460:CDS 25.0%
!! ACTTGTTTGTTAATTGTTTC+AGG + chr8_1:6804173-6804192 Msa1175460:intron 25.0%
!! TAATTGTTTCAGGTAATAAG+TGG + chr8_1:6804183-6804202 Msa1175460:intron 25.0%
!!! AAATGACGGATATTTTGTTA+AGG + chr8_1:6804425-6804444 Msa1175460:CDS 25.0%
!! TTTTGAGCAGAAATATTTAC+CGG - chr8_1:6804570-6804589 None:intergenic 25.0%
!!! CTTATTTTTGAACAAGTACT+TGG + chr8_1:6804617-6804636 Msa1175460:intron 25.0%
!! TTCTTCTAAATTTTACAGTG+TGG + chr8_1:6804679-6804698 Msa1175460:intron 25.0%
! TATCTCAAAAACAAGTTACT+TGG + chr8_1:6803436-6803455 Msa1175460:CDS 25.0%
! TTATGAGAAAATAATGATGG+GGG - chr8_1:6803550-6803569 None:intergenic 25.0%
! ACAAATACGCAAATAGTAAA+AGG + chr8_1:6803666-6803685 Msa1175460:CDS 25.0%
! ATAGTAAAAGGTTTAACAGA+AGG + chr8_1:6803678-6803697 Msa1175460:CDS 25.0%
! AAAACACTTGTGTACTATAA+TGG + chr8_1:6803782-6803801 Msa1175460:CDS 25.0%
! GTTTACACTTTATGAGTATA+TGG + chr8_1:6803895-6803914 Msa1175460:intron 25.0%
!!! AAAAGTCCTCTAGAAAATTT+TGG - chr8_1:6803955-6803974 None:intergenic 25.0%
! ATAGAATGATATGTGATGAA+GGG + chr8_1:6804027-6804046 Msa1175460:CDS 25.0%
!! ACTTGTTTGTTAATTGTTTC+AGG + chr8_1:6804173-6804192 Msa1175460:intron 25.0%
!! TAATTGTTTCAGGTAATAAG+TGG + chr8_1:6804183-6804202 Msa1175460:intron 25.0%
!!! AAATGACGGATATTTTGTTA+AGG + chr8_1:6804425-6804444 Msa1175460:CDS 25.0%
!! TTTTGAGCAGAAATATTTAC+CGG - chr8_1:6804570-6804589 None:intergenic 25.0%
!!! CTTATTTTTGAACAAGTACT+TGG + chr8_1:6804617-6804636 Msa1175460:intron 25.0%
!! TTCTTCTAAATTTTACAGTG+TGG + chr8_1:6804679-6804698 Msa1175460:intron 25.0%
!!! GTAACTTGTTTTTGAGATAG+TGG - chr8_1:6803435-6803454 None:intergenic 30.0%
AGGACTAAAGAAAAACCATT+CGG - chr8_1:6803639-6803658 None:intergenic 30.0%
TACCTCTAACCTTAATCTTA+CGG - chr8_1:6803739-6803758 None:intergenic 30.0%
!! AGAGGTACTGAAAATGTTAT+TGG + chr8_1:6803752-6803771 Msa1175460:CDS 30.0%
!! GAGGTACTGAAAATGTTATT+GGG + chr8_1:6803753-6803772 Msa1175460:CDS 30.0%
TTGTTGATACAAAACAAACC+TGG - chr8_1:6803874-6803893 None:intergenic 30.0%
! TATCCTCCAAAATTTTCTAG+AGG + chr8_1:6803946-6803965 Msa1175460:intron 30.0%
!!! TTCCTCTTCAGTTTTTTTCT+CGG - chr8_1:6804003-6804022 None:intergenic 30.0%
GATAGAATGATATGTGATGA+AGG + chr8_1:6804026-6804045 Msa1175460:CDS 30.0%
TAGAATGATATGTGATGAAG+GGG + chr8_1:6804028-6804047 Msa1175460:CDS 30.0%
! TGTTTCATGATTTTCGTGAT+CGG - chr8_1:6804075-6804094 None:intergenic 30.0%
GAAAATCATGAAACAGTTGA+AGG + chr8_1:6804080-6804099 Msa1175460:CDS 30.0%
AAGAATGAAATCCTTACATC+AGG - chr8_1:6804110-6804129 None:intergenic 30.0%
!! ATTGGTTCCATATTCTTTTC+TGG - chr8_1:6804216-6804235 None:intergenic 30.0%
! TTCAATCTCTGAAAATGAGA+TGG + chr8_1:6804293-6804312 Msa1175460:CDS 30.0%
TCGTTGAGAATGATTTACTA+TGG + chr8_1:6804510-6804529 Msa1175460:CDS 30.0%
! ATGAAATGTCTAAGTTGAGT+TGG + chr8_1:6804645-6804664 Msa1175460:intron 30.0%
! GTTATTGTTTCTTCTTAGAG+TGG - chr8_1:6804869-6804888 None:intergenic 30.0%
!!! GTAACTTGTTTTTGAGATAG+TGG - chr8_1:6803435-6803454 None:intergenic 30.0%
AGGACTAAAGAAAAACCATT+CGG - chr8_1:6803639-6803658 None:intergenic 30.0%
TACCTCTAACCTTAATCTTA+CGG - chr8_1:6803739-6803758 None:intergenic 30.0%
!! AGAGGTACTGAAAATGTTAT+TGG + chr8_1:6803752-6803771 Msa1175460:CDS 30.0%
!! GAGGTACTGAAAATGTTATT+GGG + chr8_1:6803753-6803772 Msa1175460:CDS 30.0%
TTGTTGATACAAAACAAACC+TGG - chr8_1:6803874-6803893 None:intergenic 30.0%
! TATCCTCCAAAATTTTCTAG+AGG + chr8_1:6803946-6803965 Msa1175460:intron 30.0%
!!! TTCCTCTTCAGTTTTTTTCT+CGG - chr8_1:6804003-6804022 None:intergenic 30.0%
GATAGAATGATATGTGATGA+AGG + chr8_1:6804026-6804045 Msa1175460:CDS 30.0%
TAGAATGATATGTGATGAAG+GGG + chr8_1:6804028-6804047 Msa1175460:CDS 30.0%
! TGTTTCATGATTTTCGTGAT+CGG - chr8_1:6804075-6804094 None:intergenic 30.0%
GAAAATCATGAAACAGTTGA+AGG + chr8_1:6804080-6804099 Msa1175460:CDS 30.0%
AAGAATGAAATCCTTACATC+AGG - chr8_1:6804110-6804129 None:intergenic 30.0%
!! ATTGGTTCCATATTCTTTTC+TGG - chr8_1:6804216-6804235 None:intergenic 30.0%
! TTCAATCTCTGAAAATGAGA+TGG + chr8_1:6804293-6804312 Msa1175460:CDS 30.0%
TCGTTGAGAATGATTTACTA+TGG + chr8_1:6804510-6804529 Msa1175460:CDS 30.0%
! ATGAAATGTCTAAGTTGAGT+TGG + chr8_1:6804645-6804664 Msa1175460:intron 30.0%
! GTTATTGTTTCTTCTTAGAG+TGG - chr8_1:6804869-6804888 None:intergenic 30.0%
TTTACAAGCTCTTCATCTGT+TGG - chr8_1:6803412-6803431 None:intergenic 35.0%
AGCTATAACATTGTTGACAG+TGG - chr8_1:6803470-6803489 None:intergenic 35.0%
!! GGTTTGTTTGTGTTTTTACC+TGG - chr8_1:6803529-6803548 None:intergenic 35.0%
GGACTAAAGAAAAACCATTC+GGG - chr8_1:6803638-6803657 None:intergenic 35.0%
TTTGCGTATTTGTAATCACG+AGG - chr8_1:6803659-6803678 None:intergenic 35.0%
ACAAACCTGGTTATCATCAA+AGG - chr8_1:6803861-6803880 None:intergenic 35.0%
!! AGTCCTCTAGAAAATTTTGG+AGG - chr8_1:6803952-6803971 None:intergenic 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_1:6804096-6804115 Msa1175460:intron 35.0%
TACCTTGCCAGAAAAGAATA+TGG + chr8_1:6804206-6804225 Msa1175460:CDS 35.0%
!! TTCCATATTCTTTTCTGGCA+AGG - chr8_1:6804211-6804230 None:intergenic 35.0%
GAATATGGAACCAATGTTTC+AGG + chr8_1:6804221-6804240 Msa1175460:CDS 35.0%
! CATTTTCAGAGATTGAAGAC+TGG - chr8_1:6804290-6804309 None:intergenic 35.0%
! GAAGTATCTTTATCGAACTC+AGG + chr8_1:6804315-6804334 Msa1175460:CDS 35.0%
! GGATTTTATGATTCCGAAAG+TGG + chr8_1:6804336-6804355 Msa1175460:CDS 35.0%
CATATCAATGTGTCCACTTT+CGG - chr8_1:6804352-6804371 None:intergenic 35.0%
! TTCGTTTGAAACTATGGAAG+AGG + chr8_1:6804377-6804396 Msa1175460:CDS 35.0%
GTAAATCATTCTCAACGACT+CGG - chr8_1:6804508-6804527 None:intergenic 35.0%
ATGATTTACTATGGAAGCAG+TGG + chr8_1:6804519-6804538 Msa1175460:CDS 35.0%
!!! TGTCTAAGTTGAGTTGGTTT+TGG + chr8_1:6804651-6804670 Msa1175460:intron 35.0%
! CAATGTTCTGGATACTTCAA+CGG + chr8_1:6804702-6804721 Msa1175460:CDS 35.0%
GCATCATTTCGAGATGATTT+CGG + chr8_1:6804760-6804779 Msa1175460:CDS 35.0%
CATCATTTCGAGATGATTTC+GGG + chr8_1:6804761-6804780 Msa1175460:CDS 35.0%
ATCATTTCGAGATGATTTCG+GGG + chr8_1:6804762-6804781 Msa1175460:CDS 35.0%
TTGCAATTGATCATCTCTAG+AGG - chr8_1:6804826-6804845 None:intergenic 35.0%
! TTGTTTCTTCTTAGAGTGGA+AGG - chr8_1:6804865-6804884 None:intergenic 35.0%
! TGAAGCAGATCTTTTTGACA+TGG - chr8_1:6804917-6804936 None:intergenic 35.0%
TTTACAAGCTCTTCATCTGT+TGG - chr8_1:6803412-6803431 None:intergenic 35.0%
AGCTATAACATTGTTGACAG+TGG - chr8_1:6803470-6803489 None:intergenic 35.0%
!! GGTTTGTTTGTGTTTTTACC+TGG - chr8_1:6803529-6803548 None:intergenic 35.0%
GGACTAAAGAAAAACCATTC+GGG - chr8_1:6803638-6803657 None:intergenic 35.0%
TTTGCGTATTTGTAATCACG+AGG - chr8_1:6803659-6803678 None:intergenic 35.0%
ACAAACCTGGTTATCATCAA+AGG - chr8_1:6803861-6803880 None:intergenic 35.0%
!! AGTCCTCTAGAAAATTTTGG+AGG - chr8_1:6803952-6803971 None:intergenic 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_1:6804096-6804115 Msa1175460:intron 35.0%
TACCTTGCCAGAAAAGAATA+TGG + chr8_1:6804206-6804225 Msa1175460:CDS 35.0%
!! TTCCATATTCTTTTCTGGCA+AGG - chr8_1:6804211-6804230 None:intergenic 35.0%
GAATATGGAACCAATGTTTC+AGG + chr8_1:6804221-6804240 Msa1175460:CDS 35.0%
! CATTTTCAGAGATTGAAGAC+TGG - chr8_1:6804290-6804309 None:intergenic 35.0%
! GAAGTATCTTTATCGAACTC+AGG + chr8_1:6804315-6804334 Msa1175460:CDS 35.0%
! GGATTTTATGATTCCGAAAG+TGG + chr8_1:6804336-6804355 Msa1175460:CDS 35.0%
CATATCAATGTGTCCACTTT+CGG - chr8_1:6804352-6804371 None:intergenic 35.0%
! TTCGTTTGAAACTATGGAAG+AGG + chr8_1:6804377-6804396 Msa1175460:CDS 35.0%
GTAAATCATTCTCAACGACT+CGG - chr8_1:6804508-6804527 None:intergenic 35.0%
ATGATTTACTATGGAAGCAG+TGG + chr8_1:6804519-6804538 Msa1175460:CDS 35.0%
!!! TGTCTAAGTTGAGTTGGTTT+TGG + chr8_1:6804651-6804670 Msa1175460:intron 35.0%
! CAATGTTCTGGATACTTCAA+CGG + chr8_1:6804702-6804721 Msa1175460:CDS 35.0%
GCATCATTTCGAGATGATTT+CGG + chr8_1:6804760-6804779 Msa1175460:CDS 35.0%
CATCATTTCGAGATGATTTC+GGG + chr8_1:6804761-6804780 Msa1175460:CDS 35.0%
ATCATTTCGAGATGATTTCG+GGG + chr8_1:6804762-6804781 Msa1175460:CDS 35.0%
TTGCAATTGATCATCTCTAG+AGG - chr8_1:6804826-6804845 None:intergenic 35.0%
! TTGTTTCTTCTTAGAGTGGA+AGG - chr8_1:6804865-6804884 None:intergenic 35.0%
! TGAAGCAGATCTTTTTGACA+TGG - chr8_1:6804917-6804936 None:intergenic 35.0%
CCAACAGGAACATAGTTATG+AGG - chr8_1:6803376-6803395 None:intergenic 40.0%
CCTCATAACTATGTTCCTGT+TGG + chr8_1:6803373-6803392 Msa1175460:CDS 40.0%
ATGTTTGCAAGTTCGAACCT+TGG + chr8_1:6803497-6803516 Msa1175460:CDS 40.0%
TGTTTGCAAGTTCGAACCTT+GGG + chr8_1:6803498-6803517 Msa1175460:CDS 40.0%
! TTTTTACCTGGTAAGTCCCA+AGG - chr8_1:6803517-6803536 None:intergenic 40.0%
TAAAATCCGATGATCCCGAA+TGG + chr8_1:6803621-6803640 Msa1175460:CDS 40.0%
GAAAAACCATTCGGGATCAT+CGG - chr8_1:6803630-6803649 None:intergenic 40.0%
TTTAACAGAAGGACACAGTG+TGG + chr8_1:6803689-6803708 Msa1175460:CDS 40.0%
! TGGTCTTGACCGTAAGATTA+AGG + chr8_1:6803727-6803746 Msa1175460:CDS 40.0%
GACCGTAAGATTAAGGTTAG+AGG + chr8_1:6803734-6803753 Msa1175460:CDS 40.0%
TACTATAATGGTTGTGCTCC+TGG + chr8_1:6803794-6803813 Msa1175460:CDS 40.0%
! TCCTGGTGTTAATAGCAACT+GGG + chr8_1:6803811-6803830 Msa1175460:CDS 40.0%
! TACCACCTTTGATGATAACC+AGG + chr8_1:6803853-6803872 Msa1175460:CDS 40.0%
AACCTGGTTATCATCAAAGG+TGG - chr8_1:6803858-6803877 None:intergenic 40.0%
AGCCGAGAAAAAAACTGAAG+AGG + chr8_1:6803998-6804017 Msa1175460:CDS 40.0%
TGATGAGGTTCCTGAAACAT+TGG - chr8_1:6804234-6804253 None:intergenic 40.0%
AATGTTTCAGGAACCTCATC+AGG + chr8_1:6804233-6804252 Msa1175460:CDS 40.0%
! AAGTACTTTTCAGCCTGATG+AGG - chr8_1:6804249-6804268 None:intergenic 40.0%
! GCAGAGTTCGTTTGAAACTA+TGG + chr8_1:6804371-6804390 Msa1175460:CDS 40.0%
! TGCTGAATTAGTCTCTATGC+CGG + chr8_1:6804548-6804567 Msa1175460:CDS 40.0%
TTTACAGTGTGGCAATGTTC+TGG + chr8_1:6804690-6804709 Msa1175460:intron 40.0%
CTTGTTGAACATCCTAGTTC+AGG + chr8_1:6804727-6804746 Msa1175460:CDS 40.0%
TCATTTCGAGATGATTTCGG+GGG + chr8_1:6804763-6804782 Msa1175460:CDS 40.0%
! AGATCTTTTTGACATGGTGG+TGG - chr8_1:6804911-6804930 None:intergenic 40.0%
! AGCAGATCTTTTTGACATGG+TGG - chr8_1:6804914-6804933 None:intergenic 40.0%
CCAACAGGAACATAGTTATG+AGG - chr8_1:6803376-6803395 None:intergenic 40.0%
CCTCATAACTATGTTCCTGT+TGG + chr8_1:6803373-6803392 Msa1175460:CDS 40.0%
ATGTTTGCAAGTTCGAACCT+TGG + chr8_1:6803497-6803516 Msa1175460:CDS 40.0%
TGTTTGCAAGTTCGAACCTT+GGG + chr8_1:6803498-6803517 Msa1175460:CDS 40.0%
! TTTTTACCTGGTAAGTCCCA+AGG - chr8_1:6803517-6803536 None:intergenic 40.0%
TAAAATCCGATGATCCCGAA+TGG + chr8_1:6803621-6803640 Msa1175460:CDS 40.0%
GAAAAACCATTCGGGATCAT+CGG - chr8_1:6803630-6803649 None:intergenic 40.0%
TTTAACAGAAGGACACAGTG+TGG + chr8_1:6803689-6803708 Msa1175460:CDS 40.0%
! TGGTCTTGACCGTAAGATTA+AGG + chr8_1:6803727-6803746 Msa1175460:CDS 40.0%
GACCGTAAGATTAAGGTTAG+AGG + chr8_1:6803734-6803753 Msa1175460:CDS 40.0%
TACTATAATGGTTGTGCTCC+TGG + chr8_1:6803794-6803813 Msa1175460:CDS 40.0%
! TCCTGGTGTTAATAGCAACT+GGG + chr8_1:6803811-6803830 Msa1175460:CDS 40.0%
! TACCACCTTTGATGATAACC+AGG + chr8_1:6803853-6803872 Msa1175460:CDS 40.0%
AACCTGGTTATCATCAAAGG+TGG - chr8_1:6803858-6803877 None:intergenic 40.0%
AGCCGAGAAAAAAACTGAAG+AGG + chr8_1:6803998-6804017 Msa1175460:CDS 40.0%
TGATGAGGTTCCTGAAACAT+TGG - chr8_1:6804234-6804253 None:intergenic 40.0%
AATGTTTCAGGAACCTCATC+AGG + chr8_1:6804233-6804252 Msa1175460:CDS 40.0%
! AAGTACTTTTCAGCCTGATG+AGG - chr8_1:6804249-6804268 None:intergenic 40.0%
! GCAGAGTTCGTTTGAAACTA+TGG + chr8_1:6804371-6804390 Msa1175460:CDS 40.0%
! TGCTGAATTAGTCTCTATGC+CGG + chr8_1:6804548-6804567 Msa1175460:CDS 40.0%
TTTACAGTGTGGCAATGTTC+TGG + chr8_1:6804690-6804709 Msa1175460:intron 40.0%
CTTGTTGAACATCCTAGTTC+AGG + chr8_1:6804727-6804746 Msa1175460:CDS 40.0%
TCATTTCGAGATGATTTCGG+GGG + chr8_1:6804763-6804782 Msa1175460:CDS 40.0%
! AGATCTTTTTGACATGGTGG+TGG - chr8_1:6804911-6804930 None:intergenic 40.0%
! AGCAGATCTTTTTGACATGG+TGG - chr8_1:6804914-6804933 None:intergenic 40.0%
CAAGCTCTTCATCTGTTGGA+CGG - chr8_1:6803408-6803427 None:intergenic 45.0%
AATCTTACGGTCAAGACCAG+TGG - chr8_1:6803726-6803745 None:intergenic 45.0%
! CTCCTGGTGTTAATAGCAAC+TGG + chr8_1:6803810-6803829 Msa1175460:CDS 45.0%
! ACCCAGTTGCTATTAACACC+AGG - chr8_1:6803815-6803834 None:intergenic 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_1:6804056-6804075 None:intergenic 45.0%
GCATAGTATTCGCCTGAACT+AGG - chr8_1:6804742-6804761 None:intergenic 45.0%
AGATGATTTCGGGGGATTTG+AGG + chr8_1:6804771-6804790 Msa1175460:CDS 45.0%
!! TGGTTGGTCTTGGATGATAC+TGG - chr8_1:6804891-6804910 None:intergenic 45.0%
!!! CTTTTTGACATGGTGGTGGT+TGG - chr8_1:6804907-6804926 None:intergenic 45.0%
CAAGCTCTTCATCTGTTGGA+CGG - chr8_1:6803408-6803427 None:intergenic 45.0%
AATCTTACGGTCAAGACCAG+TGG - chr8_1:6803726-6803745 None:intergenic 45.0%
! CTCCTGGTGTTAATAGCAAC+TGG + chr8_1:6803810-6803829 Msa1175460:CDS 45.0%
! ACCCAGTTGCTATTAACACC+AGG - chr8_1:6803815-6803834 None:intergenic 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_1:6804056-6804075 None:intergenic 45.0%
GCATAGTATTCGCCTGAACT+AGG - chr8_1:6804742-6804761 None:intergenic 45.0%
AGATGATTTCGGGGGATTTG+AGG + chr8_1:6804771-6804790 Msa1175460:CDS 45.0%
!! TGGTTGGTCTTGGATGATAC+TGG - chr8_1:6804891-6804910 None:intergenic 45.0%
!!! CTTTTTGACATGGTGGTGGT+TGG - chr8_1:6804907-6804926 None:intergenic 45.0%
GGACGGAATCTGAATCCAAC+AGG - chr8_1:6803391-6803410 None:intergenic 50.0%
TTCGAACCTTGGGACTTACC+AGG + chr8_1:6803508-6803527 Msa1175460:CDS 50.0%
GAAGGACACAGTGTGGATAC+TGG + chr8_1:6803696-6803715 Msa1175460:CDS 50.0%
TGTGGATACTGGAAAGCCAC+TGG + chr8_1:6803707-6803726 Msa1175460:CDS 50.0%
GACTGGTATGTCGACGAGAA+AGG - chr8_1:6804273-6804292 None:intergenic 50.0%
! TCATTCTCAACGACTCGGAC+TGG - chr8_1:6804503-6804522 None:intergenic 50.0%
GGACGGAATCTGAATCCAAC+AGG - chr8_1:6803391-6803410 None:intergenic 50.0%
TTCGAACCTTGGGACTTACC+AGG + chr8_1:6803508-6803527 Msa1175460:CDS 50.0%
GAAGGACACAGTGTGGATAC+TGG + chr8_1:6803696-6803715 Msa1175460:CDS 50.0%
TGTGGATACTGGAAAGCCAC+TGG + chr8_1:6803707-6803726 Msa1175460:CDS 50.0%
GACTGGTATGTCGACGAGAA+AGG - chr8_1:6804273-6804292 None:intergenic 50.0%
! TCATTCTCAACGACTCGGAC+TGG - chr8_1:6804503-6804522 None:intergenic 50.0%
!! GACATGGTGGTGGTTGGTCT+TGG - chr8_1:6804901-6804920 None:intergenic 55.0%
!! GACATGGTGGTGGTTGGTCT+TGG - chr8_1:6804901-6804920 None:intergenic 55.0%
! CTCGGACTGGACAGGAAAGC+TGG - chr8_1:6804490-6804509 None:intergenic 60.0%
! CTCAACGACTCGGACTGGAC+AGG - chr8_1:6804498-6804517 None:intergenic 60.0%
! CTCGGACTGGACAGGAAAGC+TGG - chr8_1:6804490-6804509 None:intergenic 60.0%
! CTCAACGACTCGGACTGGAC+AGG - chr8_1:6804498-6804517 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 6803358 6804954 6803358 ID=Msa1175460;Name=Msa1175460
chr8_1 mRNA 6803358 6804954 6803358 ID=Msa1175460-mRNA-1;Parent=Msa1175460;Name=Msa1175460-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0|1|1|1|5|0|405
chr8_1 exon 6803358 6803529 6803358 ID=Msa1175460-mRNA-1:exon:2506;Parent=Msa1175460-mRNA-1
chr8_1 exon 6803609 6803874 6803609 ID=Msa1175460-mRNA-1:exon:2507;Parent=Msa1175460-mRNA-1
chr8_1 exon 6803966 6804112 6803966 ID=Msa1175460-mRNA-1:exon:2508;Parent=Msa1175460-mRNA-1
chr8_1 exon 6804195 6804569 6804195 ID=Msa1175460-mRNA-1:exon:2509;Parent=Msa1175460-mRNA-1
chr8_1 exon 6804697 6804954 6804697 ID=Msa1175460-mRNA-1:exon:2510;Parent=Msa1175460-mRNA-1
chr8_1 CDS 6803358 6803529 6803358 ID=Msa1175460-mRNA-1:cds;Parent=Msa1175460-mRNA-1
chr8_1 CDS 6803609 6803874 6803609 ID=Msa1175460-mRNA-1:cds;Parent=Msa1175460-mRNA-1
chr8_1 CDS 6803966 6804112 6803966 ID=Msa1175460-mRNA-1:cds;Parent=Msa1175460-mRNA-1
chr8_1 CDS 6804195 6804569 6804195 ID=Msa1175460-mRNA-1:cds;Parent=Msa1175460-mRNA-1
chr8_1 CDS 6804697 6804954 6804697 ID=Msa1175460-mRNA-1:cds;Parent=Msa1175460-mRNA-1
Gene Sequence

>Msa1175460

ATGACAAACTCATTTCCTCATAACTATGTTCCTGTTGGATTCAGATTCCGTCCAACAGATGAAGAGCTTGTAAACCACTATCTCAAAAACAAGTTACTTGGTAATGATTCCACTGTCAACAATGTTATAGCTGAAGTTGATGTTTGCAAGTTCGAACCTTGGGACTTACCAGCTTGTTCAATCATAAAATCCGATGATCCCGAATGGTTTTTCTTTAGTCCTCGTGATTACAAATACGCAAATAGTAAAAGGTTTAACAGAAGGACACAGTGTGGATACTGGAAAGCCACTGGTCTTGACCGTAAGATTAAGGTTAGAGGTACTGAAAATGTTATTGGGACAAAGAAAACACTTGTGTACTATAATGGTTGTGCTCCTGGTGTTAATAGCAACTGGGTGATTCATGAATATCATTCTACCACCTTTGATGATAACCAGAGGACTTTTGTTTTGTGTCGCTTGATGAAGAAAGCCGAGAAAAAAACTGAAGAGGAAACTGATAGAATGATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGATCACGAAAATCATGAAACAGTTGAAGGAATTCCTGATGTAATAAGTGGTACCTTGCCAGAAAAGAATATGGAACCAATGTTTCAGGAACCTCATCAGGCTGAAAAGTACTTTCCTTTCTCGTCGACATACCAGTCTTCAATCTCTGAAAATGAGATGGAAGTATCTTTATCGAACTCAGGATTTTATGATTCCGAAAGTGGACACATTGATATGCAGAGTTCGTTTGAAACTATGGAAGAGGAAAATCAGTTCATCAATTCAATGTTAAATGACGGATATTTTGTTAAGGATAATGATATGTATAGCGAACAAAGAAGACACACTTTTGCCAGCTTTCCTGTCCAGTCCGAGTCGTTGAGAATGATTTACTATGGAAGCAGTGGCACAAATGCTGAATTAGTCTCTATGCCGTGTGGCAATGTTCTGGATACTTCAACGGCGCTTGTTGAACATCCTAGTTCAGGCGAATACTATGCATCATTTCGAGATGATTTCGGGGGATTTGAGGCATCATCTTGTGATTCAACTGCAGATAAACCTCTAGAGATGATCAATTGCAATGAAATTTCTAGTGCACCTTCCACTCTAAGAAGAAACAATAACCAGTATCATCCAAGACCAACCACCACCATGTCAAAAAGATCTGCTTCAAGACGATCTCAAACATAG
Protein sequence

>Msa1175460

MTNSFPHNYVPVGFRFRPTDEELVNHYLKNKLLGNDSTVNNVIAEVDVCKFEPWDLPACSIIKSDDPEWFFFSPRDYKYANSKRFNRRTQCGYWKATGLDRKIKVRGTENVIGTKKTLVYYNGCAPGVNSNWVIHEYHSTTFDDNQRTFVLCRLMKKAEKKTEEETDRMICDEGEPSRHMSSDHENHETVEGIPDVISGTLPEKNMEPMFQEPHQAEKYFPFSSTYQSSISENEMEVSLSNSGFYDSESGHIDMQSSFETMEEENQFINSMLNDGYFVKDNDMYSEQRRHTFASFPVQSESLRMIYYGSSGTNAELVSMPCGNVLDTSTALVEHPSSGEYYASFRDDFGGFEASSCDSTADKPLEMINCNEISSAPSTLRRNNNQYHPRPTTTMSKRSASRRSQT*