AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175470 MtrunA17_Chr8g0345691 88.095 420 42 3 1 413 1 419 0.0 722
Msa1175470 MtrunA17_Chr8g0345671 64.352 432 101 6 1 413 1 398 0.0 518
Msa1175470 MtrunA17_Chr8g0345721 61.582 177 37 2 1 148 26 200 2.98e-70 220
Msa1175470 MtrunA17_Chr8g0345741 70.290 138 41 0 23 160 2 139 4.07e-67 210
Msa1175470 MtrunA17_Chr8g0345711 60.390 154 60 1 1 153 1 154 8.34e-63 200
Msa1175470 MtrunA17_Chr8g0345731 61.039 154 55 2 10 160 22 173 4.14e-62 198
Msa1175470 MtrunA17_Chr5g0428991 42.182 275 128 10 8 268 21 278 2.92e-53 187
Msa1175470 MtrunA17_Chr3g0128151 53.659 164 67 4 8 165 18 178 1.89e-51 182
Msa1175470 MtrunA17_Chr3g0128111 52.071 169 68 5 15 177 45 206 3.05e-51 172
Msa1175470 MtrunA17_Chr8g0345701 56.291 151 48 5 12 148 7 153 1.72e-47 160
Msa1175470 MtrunA17_Chr6g0481091 48.214 168 78 5 12 173 6 170 2.46e-43 151
Msa1175470 MtrunA17_Chr3g0109821 45.055 182 90 4 12 186 6 184 1.20e-41 155
Msa1175470 MtrunA17_Chr5g0400461 45.783 166 81 4 12 169 6 170 1.42e-41 149
Msa1175470 MtrunA17_Chr4g0054791 45.455 187 92 6 12 191 6 189 2.66e-40 145
Msa1175470 MtrunA17_Chr2g0309891 46.154 156 74 4 12 160 6 158 5.30e-39 143
Msa1175470 MtrunA17_Chr3g0139331 47.059 153 74 4 12 160 11 160 7.50e-38 140
Msa1175470 MtrunA17_Chr5g0433781 45.806 155 75 4 12 160 6 157 2.09e-37 143
Msa1175470 MtrunA17_Chr5g0398971 30.343 379 218 13 9 376 4 347 3.34e-37 138
Msa1175470 MtrunA17_Chr1g0197361 47.020 151 73 4 15 160 11 159 5.79e-37 142
Msa1175470 MtrunA17_Chr8g0364791 40.373 161 87 5 15 169 9 166 2.91e-36 137
Msa1175470 MtrunA17_Chr4g0018391 45.860 157 77 5 8 159 3 156 3.03e-36 135
Msa1175470 MtrunA17_Chr3g0130101 43.046 151 77 5 15 159 10 157 1.94e-35 134
Msa1175470 MtrunA17_Chr2g0318101 40.120 167 80 4 11 160 14 177 3.55e-35 133
Msa1175470 MtrunA17_Chr1g0147421 43.137 153 81 3 12 160 27 177 3.71e-35 133
Msa1175470 MtrunA17_Chr4g0056541 42.604 169 89 5 8 171 3 168 4.31e-35 133
Msa1175470 MtrunA17_Chr8g0384201 40.994 161 86 5 15 169 9 166 4.31e-35 135
Msa1175470 MtrunA17_Chr3g0091921 47.134 157 70 7 12 160 16 167 4.49e-35 131
Msa1175470 MtrunA17_Chr8g0385991 42.767 159 75 4 9 156 11 164 1.00e-34 128
Msa1175470 MtrunA17_Chr2g0316971 50.382 131 61 3 11 140 22 149 1.20e-34 132
Msa1175470 MtrunA17_Chr4g0060931 45.223 157 73 7 12 160 17 168 1.52e-34 131
Msa1175470 MtrunA17_Chr1g0183741 41.875 160 86 5 12 169 10 164 1.97e-34 129
Msa1175470 MtrunA17_Chr6g0484441 43.030 165 83 7 10 168 3 162 3.99e-34 129
Msa1175470 MtrunA17_Chr2g0309331 33.058 242 139 7 12 239 10 242 4.59e-34 129
Msa1175470 MtrunA17_Chr2g0326361 44.304 158 75 5 13 160 15 169 4.90e-34 129
Msa1175470 MtrunA17_Chr4g0047841 44.366 142 75 3 11 151 14 152 7.25e-34 129
Msa1175470 MtrunA17_Chr7g0263931 40.881 159 81 5 11 159 10 165 1.17e-33 128
Msa1175470 MtrunA17_Chr4g0017921 46.452 155 70 6 12 159 8 156 1.24e-33 129
Msa1175470 MtrunA17_Chr4g0042561 45.000 160 69 7 12 159 9 161 1.28e-33 126
Msa1175470 MtrunA17_Chr3g0092671 45.033 151 76 3 15 160 8 156 1.29e-33 132
Msa1175470 MtrunA17_Chr7g0217721 52.344 128 55 5 14 140 21 143 2.39e-33 128
Msa1175470 MtrunA17_Chr1g0201021 47.097 155 72 6 5 158 13 158 2.61e-33 131
Msa1175470 MtrunA17_Chr7g0252971 37.500 216 106 9 11 207 7 212 2.82e-33 127
Msa1175470 MtrunA17_Chr1g0200561 43.478 161 80 6 7 159 11 168 3.08e-33 127
Msa1175470 MtrunA17_Chr8g0361731 40.120 167 82 5 15 166 17 180 3.14e-33 128
Msa1175470 MtrunA17_Chr7g0217711 50.394 127 57 4 14 139 21 142 3.66e-33 122
Msa1175470 MtrunA17_Chr7g0214071 38.728 173 95 5 11 179 14 179 3.78e-33 125
Msa1175470 MtrunA17_Chr2g0312321 40.828 169 86 5 12 173 11 172 5.99e-33 125
Msa1175470 MtrunA17_Chr7g0261411 42.857 147 79 4 12 156 10 153 9.04e-33 125
Msa1175470 MtrunA17_Chr6g0453451 46.405 153 70 6 12 163 20 161 1.26e-32 125
Msa1175470 MtrunA17_Chr5g0417001 36.041 197 108 5 9 190 10 203 1.53e-32 126
Msa1175470 MtrunA17_Chr8g0372121 42.484 153 80 5 12 159 6 155 2.04e-32 124
Msa1175470 MtrunA17_Chr5g0405211 43.791 153 78 5 12 159 8 157 4.55e-32 124
Msa1175470 MtrunA17_Chr4g0076731 42.581 155 81 5 10 160 52 202 4.61e-32 126
Msa1175470 MtrunA17_Chr2g0311661 39.412 170 81 6 10 159 18 185 5.58e-32 122
Msa1175470 MtrunA17_Chr4g0026141 40.120 167 81 5 1 156 1 159 7.72e-32 121
Msa1175470 MtrunA17_Chr6g0453131 41.317 167 79 6 9 160 12 174 9.60e-32 124
Msa1175470 MtrunA17_Chr3g0124761 41.139 158 78 5 11 159 6 157 1.01e-31 122
Msa1175470 MtrunA17_Chr6g0461661 44.615 130 68 3 12 140 18 144 1.04e-31 124
Msa1175470 MtrunA17_Chr5g0417791 41.765 170 82 8 12 171 3 165 1.05e-31 121
Msa1175470 MtrunA17_Chr3g0144271 46.512 129 66 2 12 139 23 149 1.26e-31 124
Msa1175470 MtrunA17_Chr2g0311651 37.441 211 102 8 10 192 19 227 1.52e-31 122
Msa1175470 MtrunA17_Chr3g0130731 41.875 160 78 5 12 162 7 160 1.71e-31 121
Msa1175470 MtrunA17_Chr7g0253011 47.407 135 64 5 8 139 14 144 2.15e-31 123
Msa1175470 MtrunA17_Chr1g0197351 42.675 157 75 4 15 159 45 198 2.62e-31 124
Msa1175470 MtrunA17_Chr8g0384721 39.306 173 80 7 12 170 7 168 2.98e-31 120
Msa1175470 MtrunA17_Chr2g0321741 44.286 140 72 4 23 161 2 136 2.25e-30 120
Msa1175470 MtrunA17_Chr8g0346001 37.500 192 91 7 11 176 14 202 5.56e-30 120
Msa1175470 MtrunA17_Chr4g0038751 41.104 163 85 5 15 169 18 177 1.53e-29 116
Msa1175470 MtrunA17_Chr2g0318081 40.764 157 76 6 12 159 16 164 1.73e-29 117
Msa1175470 MtrunA17_Chr3g0131911 36.842 171 89 5 9 165 11 176 6.70e-29 113
Msa1175470 MtrunA17_Chr7g0266701 37.500 168 88 6 9 161 1 166 1.09e-28 113
Msa1175470 MtrunA17_Chr8g0359921 34.101 217 127 8 12 218 14 224 1.53e-28 114
Msa1175470 MtrunA17_Chr2g0321631 39.744 156 81 5 13 156 5 159 3.78e-28 111
Msa1175470 MtrunA17_Chr5g0442771 31.227 269 148 10 15 252 21 283 1.07e-26 108
Msa1175470 MtrunA17_Chr8g0384351 33.333 165 89 6 12 175 10 154 1.35e-19 85.9
Msa1175470 MtrunA17_Chr4g0050701 27.684 177 99 7 12 173 11 173 3.12e-19 85.1
Msa1175470 MtrunA17_Chr3g0113001 43.363 113 50 6 63 163 13 123 1.61e-18 85.5
Msa1175470 MtrunA17_Chr3g0130321 32.919 161 83 4 12 156 7 158 1.35e-16 78.2
Msa1175470 MtrunA17_Chr7g0251651 30.636 173 99 7 12 174 18 179 6.05e-16 75.9
Msa1175470 MtrunA17_Chr3g0113031 27.935 247 145 11 80 302 5 242 5.14e-15 74.7
Msa1175470 MtrunA17_Chr7g0243371 38.095 84 50 2 58 139 6 89 1.46e-14 69.7
Msa1175470 MtrunA17_Chr7g0251661 30.827 133 78 5 12 139 10 133 2.36e-12 64.7
Msa1175470 MtrunA17_Chr7g0274971 26.027 219 130 11 18 219 11 214 1.89e-11 63.5
Msa1175470 MtrunA17_Chr3g0113011 60.417 48 18 1 13 60 20 66 5.93e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175470 AT4G01550.1 51.724 174 79 3 14 185 6 176 8.19e-54 186
Msa1175470 AT4G35580.3 52.469 162 68 4 8 163 5 163 3.98e-52 182
Msa1175470 AT4G35580.2 52.469 162 68 4 8 163 5 163 4.40e-52 182
Msa1175470 AT4G35580.1 52.469 162 68 4 8 163 5 163 4.75e-52 182
Msa1175470 AT3G49530.2 51.235 162 67 5 8 161 9 166 3.45e-50 175
Msa1175470 AT1G33060.2 53.797 158 64 4 8 159 20 174 9.46e-50 178
Msa1175470 AT1G33060.1 53.797 158 64 4 8 159 20 174 9.48e-50 178
Msa1175470 AT3G49530.1 51.235 162 67 5 8 161 9 166 1.02e-49 175
Msa1175470 AT5G24590.2 51.875 160 69 4 8 161 9 166 7.59e-49 172
Msa1175470 AT4G01520.1 37.281 228 124 6 13 228 5 225 6.60e-44 155
Msa1175470 AT4G17980.1 39.241 237 126 7 12 233 6 239 4.84e-43 152
Msa1175470 AT4G17980.2 39.241 237 126 7 12 233 6 239 8.58e-43 152
Msa1175470 AT4G01540.4 37.445 227 123 6 14 228 6 225 1.43e-42 154
Msa1175470 AT4G01540.2 38.158 228 120 7 14 228 6 225 2.85e-42 154
Msa1175470 AT4G01540.3 37.445 227 123 6 14 228 6 225 3.66e-42 154
Msa1175470 AT3G17730.1 46.512 172 79 6 12 173 6 174 4.82e-42 149
Msa1175470 AT4G01540.1 37.445 227 123 6 14 228 6 225 5.94e-42 154
Msa1175470 AT5G17260.1 49.032 155 69 4 12 159 6 157 3.03e-41 152
Msa1175470 AT3G10490.1 48.026 152 69 4 15 159 30 178 3.23e-41 146
Msa1175470 AT3G10480.1 47.368 152 70 4 15 159 30 178 1.71e-40 149
Msa1175470 AT3G10480.2 47.682 151 70 4 15 159 30 177 1.90e-40 149
Msa1175470 AT3G10490.2 48.026 152 69 4 15 159 30 178 3.07e-40 149
Msa1175470 AT5G46590.1 48.750 160 73 5 12 164 6 163 1.06e-39 144
Msa1175470 AT1G65910.1 49.032 155 70 4 12 160 6 157 2.88e-39 149
Msa1175470 AT3G03200.1 47.742 155 71 4 12 159 6 157 1.42e-38 145
Msa1175470 AT1G02230.1 45.752 153 78 4 13 162 4 154 1.60e-37 140
Msa1175470 AT1G32510.1 39.910 223 108 9 12 214 6 222 2.94e-37 137
Msa1175470 AT5G46590.2 51.538 130 60 3 12 140 6 133 9.62e-37 135
Msa1175470 AT5G61430.1 47.134 157 70 7 12 160 16 167 1.00e-36 137
Msa1175470 AT2G24430.2 45.161 155 77 5 12 161 16 167 1.76e-36 135
Msa1175470 AT2G24430.1 45.161 155 77 5 12 161 16 167 1.76e-36 135
Msa1175470 AT1G12260.2 43.949 157 80 5 8 159 3 156 1.18e-35 134
Msa1175470 AT5G39820.1 49.275 138 66 3 10 146 18 152 1.40e-35 134
Msa1175470 AT1G12260.1 43.949 157 80 5 8 159 3 156 1.96e-35 135
Msa1175470 AT1G54330.1 47.682 151 73 4 12 159 6 153 2.88e-35 132
Msa1175470 AT5G39610.1 45.513 156 72 6 12 159 20 170 3.74e-35 131
Msa1175470 AT2G27300.1 33.977 259 130 10 1 237 11 250 5.25e-35 132
Msa1175470 AT3G44290.2 43.210 162 77 6 1 161 11 158 5.29e-35 129
Msa1175470 AT5G62380.2 43.949 157 80 5 8 159 3 156 6.83e-35 132
Msa1175470 AT5G62380.1 43.949 157 80 5 8 159 3 156 6.83e-35 132
Msa1175470 AT5G07680.2 46.497 157 69 7 12 159 3 153 8.40e-35 131
Msa1175470 AT1G69490.1 43.038 158 75 6 12 159 9 161 8.72e-35 130
Msa1175470 AT5G07680.1 46.497 157 69 7 12 159 17 167 8.84e-35 131
Msa1175470 AT3G15170.1 45.860 157 74 5 12 160 20 173 1.15e-34 130
Msa1175470 AT3G10500.1 40.654 214 108 9 15 219 12 215 1.29e-34 135
Msa1175470 AT1G26870.1 35.983 239 105 8 15 212 19 250 1.31e-34 133
Msa1175470 AT5G04410.1 45.752 153 72 5 15 160 12 160 2.18e-34 134
Msa1175470 AT3G10480.3 40.000 185 68 6 15 159 30 211 2.31e-34 134
Msa1175470 AT1G62700.1 43.949 157 80 5 8 159 3 156 3.98e-34 131
Msa1175470 AT1G62700.2 43.949 157 80 5 8 159 3 156 3.98e-34 131
Msa1175470 AT1G33280.1 46.711 152 74 5 12 159 8 156 4.51e-34 129
Msa1175470 AT5G53950.1 49.618 131 62 3 10 139 15 142 7.32e-34 130
Msa1175470 AT3G44290.1 43.210 162 77 6 1 161 11 158 7.72e-34 129
Msa1175470 AT3G18400.1 38.119 202 112 7 10 203 3 199 8.08e-34 129
Msa1175470 AT1G76420.1 42.949 156 75 5 12 159 22 171 9.00e-34 129
Msa1175470 AT3G04060.1 42.949 156 77 6 12 159 20 171 9.46e-34 129
Msa1175470 AT1G01720.1 42.857 161 76 6 9 159 4 158 9.98e-34 127
Msa1175470 AT3G29035.1 50.000 130 59 5 12 140 24 148 1.69e-33 128
Msa1175470 AT3G15510.1 40.449 178 84 6 16 174 21 195 2.17e-33 129
Msa1175470 AT5G66300.1 43.506 154 78 5 12 159 12 162 2.45e-33 127
Msa1175470 AT1G71930.2 43.791 153 78 5 12 159 9 158 3.84e-33 127
Msa1175470 AT1G71930.1 43.791 153 78 5 12 159 9 158 3.84e-33 127
Msa1175470 AT5G22290.1 32.932 249 143 9 2 247 19 246 4.31e-33 127
Msa1175470 AT1G79580.3 46.053 152 76 5 12 159 17 166 5.27e-33 127
Msa1175470 AT1G79580.5 46.053 152 76 5 12 159 17 166 5.27e-33 127
Msa1175470 AT1G79580.4 46.053 152 76 5 12 159 17 166 5.27e-33 127
Msa1175470 AT1G79580.2 46.053 152 76 5 12 159 17 166 5.27e-33 127
Msa1175470 AT1G79580.1 46.053 152 76 5 12 159 17 166 5.27e-33 127
Msa1175470 AT5G08790.1 41.875 160 76 6 11 159 6 159 6.92e-33 125
Msa1175470 AT1G34190.1 46.753 154 69 5 15 160 19 167 9.21e-33 130
Msa1175470 AT3G04070.2 41.212 165 78 5 12 160 10 171 1.15e-32 126
Msa1175470 AT2G18060.3 42.073 164 87 5 12 170 9 169 1.15e-32 127
Msa1175470 AT2G18060.1 42.073 164 87 5 12 170 9 169 1.15e-32 127
Msa1175470 AT5G18270.2 34.728 239 133 7 9 237 18 243 1.27e-32 126
Msa1175470 AT3G15500.1 39.080 174 90 7 12 177 14 179 1.29e-32 125
Msa1175470 AT1G61110.1 41.520 171 78 6 7 159 11 177 1.50e-32 125
Msa1175470 AT4G10350.1 43.195 169 85 6 12 172 9 174 3.35e-32 125
Msa1175470 AT1G34180.3 46.053 152 73 4 15 160 19 167 5.56e-32 126
Msa1175470 AT5G18270.1 34.310 239 134 7 9 237 18 243 6.19e-32 124
Msa1175470 AT1G56010.2 41.401 157 79 4 12 159 19 171 1.07e-31 123
Msa1175470 AT2G02450.2 42.953 149 77 5 15 159 54 198 1.12e-31 125
Msa1175470 AT2G02450.1 42.953 149 77 5 15 159 54 198 1.18e-31 124
Msa1175470 AT4G27410.2 35.211 213 116 9 12 211 14 217 1.58e-31 122
Msa1175470 AT5G09330.5 30.466 279 157 7 15 262 9 281 1.59e-31 125
Msa1175470 AT5G09330.2 30.466 279 157 7 15 262 9 281 1.59e-31 125
Msa1175470 AT5G09330.4 30.466 279 157 7 15 262 9 281 1.59e-31 125
Msa1175470 AT5G09330.3 30.466 279 157 7 15 262 9 281 1.59e-31 125
Msa1175470 AT5G09330.1 30.466 279 157 7 15 262 9 281 1.59e-31 125
Msa1175470 AT1G34180.1 46.053 152 73 4 15 160 19 167 1.75e-31 126
Msa1175470 AT2G17040.1 40.606 165 87 5 15 171 9 170 2.06e-31 121
Msa1175470 AT4G36160.1 42.484 153 80 5 12 159 10 159 2.26e-31 123
Msa1175470 AT4G36160.3 42.484 153 80 5 12 159 10 159 2.26e-31 123
Msa1175470 AT4G36160.2 42.484 153 80 5 12 159 14 163 2.52e-31 123
Msa1175470 AT1G52890.1 38.547 179 90 7 6 176 8 174 4.81e-31 121
Msa1175470 AT5G13180.1 39.610 154 82 4 11 159 13 160 5.80e-31 119
Msa1175470 AT5G22380.1 41.772 158 80 5 10 156 3 159 6.70e-31 119
Msa1175470 AT3G61910.1 35.545 211 100 8 11 198 10 207 7.78e-31 121
Msa1175470 AT3G04070.1 45.455 132 65 4 12 139 10 138 9.21e-31 121
Msa1175470 AT1G02250.1 42.857 154 83 4 13 163 4 155 3.05e-30 120
Msa1175470 AT5G04395.1 42.254 142 68 4 12 140 28 168 3.76e-30 115
Msa1175470 AT5G64060.1 41.558 154 75 5 15 159 9 156 4.32e-30 119
Msa1175470 AT5G63790.1 38.251 183 85 7 11 171 49 225 4.35e-30 118
Msa1175470 AT3G12910.1 31.769 277 152 11 15 262 24 292 4.58e-30 118
Msa1175470 AT5G63790.2 38.251 183 85 7 11 171 59 235 5.17e-30 118
Msa1175470 AT2G43000.1 35.385 195 107 7 15 195 21 210 5.61e-30 117
Msa1175470 AT3G12977.1 38.043 184 94 7 12 184 18 192 1.11e-29 116
Msa1175470 AT1G77450.1 38.983 177 91 6 11 178 9 177 1.22e-29 115
Msa1175470 AT2G33480.2 41.176 153 78 5 11 159 14 158 1.56e-29 115
Msa1175470 AT2G33480.1 40.645 155 78 5 11 159 14 160 2.42e-29 115
Msa1175470 AT4G27410.3 33.333 228 117 10 12 211 14 234 2.62e-29 116
Msa1175470 AT3G04420.2 40.000 170 98 4 13 180 4 171 3.54e-29 115
Msa1175470 AT1G01010.1 43.590 156 78 4 14 161 5 158 4.24e-29 118
Msa1175470 AT4G28530.1 38.323 167 84 5 12 161 10 174 4.89e-29 116
Msa1175470 AT3G04420.1 40.000 170 98 4 13 180 4 171 6.09e-29 116
Msa1175470 AT2G46770.1 39.053 169 80 6 11 159 15 180 1.07e-28 115
Msa1175470 AT1G34180.4 42.683 164 73 5 15 160 19 179 1.17e-28 117
Msa1175470 AT1G34180.2 42.683 164 73 5 15 160 19 179 2.41e-28 117
Msa1175470 AT1G02220.1 43.537 147 78 4 12 157 3 145 6.61e-28 114
Msa1175470 AT1G32770.1 40.719 167 75 7 12 159 16 177 9.31e-28 113
Msa1175470 AT1G52880.1 35.681 213 111 7 16 212 21 223 1.97e-27 111
Msa1175470 AT3G44350.2 35.000 160 94 4 10 160 3 161 7.96e-27 107
Msa1175470 AT3G44350.1 38.346 133 78 3 10 139 3 134 3.42e-26 103
Msa1175470 AT1G32870.2 44.156 154 73 6 15 160 13 161 2.20e-24 105
Msa1175470 AT1G32870.1 44.156 154 73 6 15 160 13 161 2.21e-24 105
Msa1175470 AT1G32870.3 44.156 154 73 6 15 160 49 197 3.60e-24 105
Msa1175470 AT3G04430.1 37.778 135 68 5 18 140 6 136 7.38e-21 90.1
Msa1175470 AT3G12977.2 38.400 125 62 4 70 184 20 139 5.64e-19 85.9
Msa1175470 AT5G64530.2 36.154 130 65 6 12 139 3 116 6.06e-19 84.0
Msa1175470 AT5G61430.2 42.453 106 51 5 63 160 1 104 8.87e-19 86.3
Msa1175470 AT5G64530.1 35.115 131 65 6 12 139 3 116 1.14e-18 84.0
Msa1175470 AT4G10350.2 39.496 119 63 4 61 172 11 127 1.03e-17 83.6
Msa1175470 AT1G56010.1 41.414 99 47 3 70 159 8 104 1.50e-17 82.4
Msa1175470 AT4G28530.2 41.284 109 47 3 12 105 10 116 1.02e-16 80.9
Msa1175470 AT3G10490.4 46.250 80 34 3 87 159 1 78 9.95e-16 78.6
Msa1175470 AT3G10490.3 46.250 80 34 3 87 159 1 78 9.95e-16 78.6
Msa1175470 AT3G56530.1 32.667 150 93 5 12 156 52 198 4.08e-14 73.2
Msa1175470 AT2G33480.3 36.735 98 54 3 68 159 8 103 3.19e-13 68.9
Msa1175470 AT3G55210.1 31.325 166 96 9 6 156 4 166 1.22e-12 68.6
Msa1175470 AT5G14000.2 28.571 140 90 4 12 148 15 147 4.69e-12 64.3
Msa1175470 AT1G25580.1 29.670 182 100 8 12 172 58 232 4.65e-11 64.7
Msa1175470 AT5G14490.1 28.902 173 99 6 12 166 58 224 5.62e-11 63.9
Msa1175470 AT5G14490.4 28.902 173 99 6 12 166 55 221 5.94e-11 63.9
Msa1175470 AT5G14490.3 28.902 173 99 6 12 166 58 224 9.65e-11 63.5

Find 84 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTCCATATTTATTTC+TGG 0.145339 8_1:-6810671 None:intergenic
AGTACCTTTCGAGATGATTT+TGG 0.182200 8_1:+6811417 Msa1175470:CDS
AGGGGTAGCAATAATATTAT+TGG 0.231520 8_1:+6809824 Msa1175470:CDS
CTTAATCTTTCGATCCTTTC+CGG 0.233046 8_1:-6809798 None:intergenic
AAGTTTAGTTCTAACATATT+AGG 0.259365 8_1:+6811674 Msa1175470:three_prime_UTR
AAATATGGAATCAATATTTC+AGG 0.281347 8_1:+6810679 Msa1175470:CDS
ATAATATCATAGGCTACTTT+TGG 0.286296 8_1:-6809248 None:intergenic
GCATCGTGAAGTGGCGAGTT+TGG 0.289715 8_1:-6810755 None:intergenic
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_1:-6810777 None:intergenic
GATGATTATTGACGGGGATT+TGG 0.300093 8_1:+6810853 Msa1175470:CDS
TACTATAGTGGTCGTGTTCC+TGG 0.304206 8_1:+6809866 Msa1175470:CDS
CCTTACGAACAGTTGTAAAA+TGG 0.311147 8_1:+6811761 Msa1175470:three_prime_UTR
AAAACTAAAATTGAGGAATA+AGG 0.314591 8_1:-6811815 None:intergenic
CGGAAAGGATCGAAAGATTA+AGG 0.317340 8_1:+6809799 Msa1175470:CDS
TTTAAAAGGACAACTAATAA+TGG 0.327657 8_1:+6809761 Msa1175470:CDS
GGGGTAGCAATAATATTATT+GGG 0.331309 8_1:+6809825 Msa1175470:CDS
CAAAGAGTAAGAGGTTTAAA+AGG 0.342416 8_1:+6809747 Msa1175470:CDS
ACCACTAAGCTAACACTTCA+TGG 0.352118 8_1:-6811697 None:intergenic
GTCAAGAGTCGGAGGAAATA+AGG 0.354940 8_1:-6809428 None:intergenic
TACTTCGCCAGAAATAAATA+TGG 0.358384 8_1:+6810664 Msa1175470:CDS
CATCGTGAAGTGGCGAGTTT+GGG 0.375477 8_1:-6810754 None:intergenic
GGATCGAAAGATTAAGGTTA+GGG 0.381317 8_1:+6809805 Msa1175470:CDS
TTTCTTGAACATCCTAGTTC+AGG 0.382346 8_1:+6811291 Msa1175470:CDS
TCCTCTTCAATAGTTTCAAA+TGG 0.383569 8_1:-6810812 None:intergenic
ATAAGTATGCAAAGAGTAAG+AGG 0.388091 8_1:+6809738 Msa1175470:CDS
TTTGCATACTTATAATCAAT+AGG 0.393689 8_1:-6809728 None:intergenic
ATGAATCATTTGATCAAGAT+AGG 0.394555 8_1:-6811644 None:intergenic
CCAGACCGAGTCGTTGAAAA+TGG 0.402535 8_1:+6810889 Msa1175470:CDS
GAGGTTGATCATAATATCAT+AGG 0.407299 8_1:-6809258 None:intergenic
AGAGAGATATGAAGAGAAAG+TGG 0.412084 8_1:-6809349 None:intergenic
TACTTGCATACATCAACTTC+AGG 0.414938 8_1:-6809556 None:intergenic
AAGACTCTTGTTTACTATAG+TGG 0.415807 8_1:+6809854 Msa1175470:CDS
GCCATGAAGTGTTAGCTTAG+TGG 0.422146 8_1:+6811696 Msa1175470:three_prime_UTR
TGGCTGGTCTTGGATGATAC+TGG 0.422975 8_1:-6811545 None:intergenic
CGATAGTTACATTCTTAATA+CGG 0.429588 8_1:+6811850 Msa1175470:three_prime_UTR
TTCCTGGTGTTAAAAGCAGC+TGG 0.431255 8_1:+6809882 Msa1175470:CDS
TCATTATTAGTTCAGTTGCT+TGG 0.431816 8_1:-6811616 None:intergenic
AAAGCATGAATTTGTAATGC+TGG 0.434835 8_1:-6809303 None:intergenic
GACATGAAGATGGCTGGTCT+TGG 0.436307 8_1:-6811555 None:intergenic
AGGATCGAAAGATTAAGGTT+AGG 0.440394 8_1:+6809804 Msa1175470:CDS
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_1:+6810899 Msa1175470:CDS
TCGGAACTCATGTGTCTACT+TGG 0.451021 8_1:-6810486 None:intergenic
TTCAACTGCAGATATACCTT+TGG 0.460879 8_1:+6811464 Msa1175470:CDS
ACTCTTGACCATGTTCCTGT+TGG 0.471228 8_1:+6809442 Msa1175470:CDS
CATATTGTGAACTTCTGATA+AGG 0.477364 8_1:+6811873 Msa1175470:three_prime_UTR
TCGAAAAGAGCTGCTTTAAG+AGG 0.483514 8_1:+6811576 Msa1175470:CDS
GAAACAGATATTTGTGATGA+AGG 0.487684 8_1:+6810459 Msa1175470:CDS
ATTGTTAAAAGATAGAAAAC+AGG 0.487790 8_1:-6811370 None:intergenic
CTTACAAGCTCTTCATCTGT+TGG 0.488308 8_1:-6809478 None:intergenic
TCAATTCGATGATTATTGAC+GGG 0.491118 8_1:+6810846 Msa1175470:CDS
GAAATTATCATTAATTAAAG+TGG 0.491758 8_1:-6811793 None:intergenic
TTCAATCTCTGAAAATGAGC+AGG 0.497588 8_1:+6810721 Msa1175470:CDS
GGTCTGAATCTGAATCCAAC+AGG 0.502719 8_1:-6809457 None:intergenic
AAACAGATATTTGTGATGAA+GGG 0.503954 8_1:+6810460 Msa1175470:CDS
TCCATTTGAAACTATTGAAG+AGG 0.512914 8_1:+6810811 Msa1175470:CDS
GTCAATTCGATGATTATTGA+CGG 0.514303 8_1:+6810845 Msa1175470:CDS
GCATGGTATTCGCCTGAACT+AGG 0.529730 8_1:-6811303 None:intergenic
ACAAACCTTGTCATCTTCAA+AGG 0.536374 8_1:-6809930 None:intergenic
TATGAACCTTGGGAGTTACC+AGG 0.553928 8_1:+6809577 Msa1175470:CDS
CTAAAATAGGCATCGTGAAG+TGG 0.556105 8_1:-6810764 None:intergenic
TGTATGCAAGTATGAACCTT+GGG 0.557609 8_1:+6809567 Msa1175470:CDS
AGGTATAACATTGTTGACAA+TGG 0.563065 8_1:-6809536 None:intergenic
TAAAATCAGATGACCCAGAA+TGG 0.564520 8_1:+6809693 Msa1175470:CDS
ATTAAGAATGTAACTATCGT+TGG 0.564747 8_1:-6811846 None:intergenic
AATTAGAACTATGTCTCTTG+AGG 0.567105 8_1:-6811738 None:intergenic
CGATATTCTTCATACTTCAA+CGG 0.570808 8_1:+6811266 Msa1175470:CDS
AACAGATATTTGTGATGAAG+GGG 0.592526 8_1:+6810461 Msa1175470:CDS
TCCTGGTGTTAAAAGCAGCT+GGG 0.595945 8_1:+6809883 Msa1175470:CDS
ATTGACGGGGATTTGGACAA+CGG 0.596214 8_1:+6810860 Msa1175470:CDS
CAATTCGATGATTATTGACG+GGG 0.596678 8_1:+6810847 Msa1175470:CDS
ATCTGCAGTTGAATCACAAG+AGG 0.597794 8_1:-6811454 None:intergenic
GTGAAGTGGCGAGTTTGGGA+TGG 0.598328 8_1:-6810750 None:intergenic
TACCACCTTTGAAGATGACA+AGG 0.610149 8_1:+6809925 Msa1175470:CDS
ATCTGAATCCAACAGGAACA+TGG 0.616076 8_1:-6809450 None:intergenic
AACCTTGTCATCTTCAAAGG+TGG 0.630537 8_1:-6809927 None:intergenic
ATACAATTGATCGTCTCCAA+AGG 0.631084 8_1:-6811480 None:intergenic
ACAGGAACATGGTCAAGAGT+CGG 0.636129 8_1:-6809439 None:intergenic
TGCTGAAGTAGTCTCTACGC+CGG 0.650251 8_1:+6810937 Msa1175470:CDS
TATGGAATCAATATTTCAGG+CGG 0.651020 8_1:+6810682 Msa1175470:CDS
ATGTATGCAAGTATGAACCT+TGG 0.657459 8_1:+6809566 Msa1175470:CDS
AAATTGTCGAAATCAACGCA+TGG 0.663029 8_1:+6811330 Msa1175470:CDS
GGAACATGGTCAAGAGTCGG+AGG 0.664688 8_1:-6809436 None:intergenic
GCTGCTTTAAGAGGATCTTG+AGG 0.665071 8_1:+6811585 Msa1175470:CDS
GATCGAAAGATTAAGGTTAG+GGG 0.678144 8_1:+6809806 Msa1175470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_1:6809627-6809646 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_1:6809628-6809647 None:intergenic 15.0%
!! AAAGATGAAAAACATTAAAA+AGG - chr8_1:6809656-6809675 None:intergenic 15.0%
!! ATTTCTATTATCATTTATCA+AGG - chr8_1:6810562-6810581 None:intergenic 15.0%
!! TTTGAACAATATATATTTAC+CGG - chr8_1:6810959-6810978 None:intergenic 15.0%
!! GAAATTATCATTAATTAAAG+TGG - chr8_1:6811796-6811815 None:intergenic 15.0%
!! AACAAAAACAAAATATAGGA+AGG - chr8_1:6809219-6809238 None:intergenic 20.0%
!!! TTGTTTGTTTTTTTTTTACC+TGG - chr8_1:6809598-6809617 None:intergenic 20.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_1:6809626-6809645 None:intergenic 20.0%
!! TTTGCATACTTATAATCAAT+AGG - chr8_1:6809731-6809750 None:intergenic 20.0%
!! TTTAAAAGGACAACTAATAA+TGG + chr8_1:6809761-6809780 Msa1175470:CDS 20.0%
!!! TTCTGAAATTTGATGTTTAT+TGG + chr8_1:6810143-6810162 Msa1175470:intron 20.0%
!!! GAACTTGTATTTGTTTTTAT+AGG + chr8_1:6810631-6810650 Msa1175470:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_1:6810674-6810693 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_1:6810679-6810698 Msa1175470:CDS 20.0%
!! ATACACACTTTAATATCATT+TGG - chr8_1:6810984-6811003 None:intergenic 20.0%
!!! ATGTTTTTCTTTAATAGAGT+CGG + chr8_1:6811134-6811153 Msa1175470:intron 20.0%
!! ATTGTTAAAAGATAGAAAAC+AGG - chr8_1:6811373-6811392 None:intergenic 20.0%
!!! TGTTTTCTATCTTTTAACAA+TGG + chr8_1:6811372-6811391 Msa1175470:CDS 20.0%
!!! AAGTTTAGTTCTAACATATT+AGG + chr8_1:6811674-6811693 Msa1175470:three_prime_UTR 20.0%
!! AAAACTAAAATTGAGGAATA+AGG - chr8_1:6811818-6811837 None:intergenic 20.0%
!! ATGTTCAAAAACTAAAATTG+AGG - chr8_1:6811825-6811844 None:intergenic 20.0%
! GCTGAACAAAAACAAAATAT+AGG - chr8_1:6809223-6809242 None:intergenic 25.0%
!!! ATAATATCATAGGCTACTTT+TGG - chr8_1:6809251-6809270 None:intergenic 25.0%
!!! GCTGTTTTTGAAATTTGTTT+TGG - chr8_1:6809393-6809412 None:intergenic 25.0%
!! TTCATATTTTCCTATCTGAT+TGG + chr8_1:6810117-6810136 Msa1175470:intron 25.0%
! AAAACACAAATCACAAACAA+TGG + chr8_1:6810178-6810197 Msa1175470:intron 25.0%
!!! AGTTTATGATTTTGAAGCAT+TGG + chr8_1:6810318-6810337 Msa1175470:intron 25.0%
! AAACAGATATTTGTGATGAA+GGG + chr8_1:6810460-6810479 Msa1175470:CDS 25.0%
!! GAAAATCAAGAAACTTTTGA+AGG + chr8_1:6810513-6810532 Msa1175470:CDS 25.0%
!! AAATTTCGAGAACAAAGTTT+TGG + chr8_1:6810578-6810597 Msa1175470:intron 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_1:6810780-6810799 None:intergenic 25.0%
!!! ATAGATTGTGAAAAAGTACT+TGG + chr8_1:6811078-6811097 Msa1175470:intron 25.0%
! CATTCTATTAGCATTTCAAA+AGG - chr8_1:6811203-6811222 None:intergenic 25.0%
!! TCTTTTACAATTTTACAGTG+TGG + chr8_1:6811243-6811262 Msa1175470:intron 25.0%
! ATGAATCATTTGATCAAGAT+AGG - chr8_1:6811647-6811666 None:intergenic 25.0%
! ATTAAGAATGTAACTATCGT+TGG - chr8_1:6811849-6811868 None:intergenic 25.0%
! CGATAGTTACATTCTTAATA+CGG + chr8_1:6811850-6811869 Msa1175470:three_prime_UTR 25.0%
! GAGGTTGATCATAATATCAT+AGG - chr8_1:6809261-6809280 None:intergenic 30.0%
AAAGCATGAATTTGTAATGC+TGG - chr8_1:6809306-6809325 None:intergenic 30.0%
!!! GTAACTTGTTTTTGAGATAG+TGG - chr8_1:6809504-6809523 None:intergenic 30.0%
AGGTATAACATTGTTGACAA+TGG - chr8_1:6809539-6809558 None:intergenic 30.0%
ATAAGTATGCAAAGAGTAAG+AGG + chr8_1:6809738-6809757 Msa1175470:CDS 30.0%
CAAAGAGTAAGAGGTTTAAA+AGG + chr8_1:6809747-6809766 Msa1175470:CDS 30.0%
! GGACAACTAATAATGGTTTT+TGG + chr8_1:6809768-6809787 Msa1175470:CDS 30.0%
AGGGGTAGCAATAATATTAT+TGG + chr8_1:6809824-6809843 Msa1175470:CDS 30.0%
GGGGTAGCAATAATATTATT+GGG + chr8_1:6809825-6809844 Msa1175470:CDS 30.0%
! AAGACTCTTGTTTACTATAG+TGG + chr8_1:6809854-6809873 Msa1175470:CDS 30.0%
!!! GGTTTGTTTTGTTACAACAA+AGG + chr8_1:6809946-6809965 Msa1175470:intron 30.0%
! TTCAGTTTTTGAATGTTAGC+AGG + chr8_1:6810280-6810299 Msa1175470:intron 30.0%
! TATCATCCGAAATTTTGTAG+CGG + chr8_1:6810379-6810398 Msa1175470:intron 30.0%
AAAAGTCCGCTACAAAATTT+CGG - chr8_1:6810388-6810407 None:intergenic 30.0%
GAAACAGATATTTGTGATGA+AGG + chr8_1:6810459-6810478 Msa1175470:CDS 30.0%
AACAGATATTTGTGATGAAG+GGG + chr8_1:6810461-6810480 Msa1175470:CDS 30.0%
! CAAAAGTTTCTTGATTTTCG+TGG - chr8_1:6810512-6810531 None:intergenic 30.0%
TACTTCGCCAGAAATAAATA+TGG + chr8_1:6810664-6810683 Msa1175470:CDS 30.0%
TATGGAATCAATATTTCAGG+CGG + chr8_1:6810682-6810701 Msa1175470:CDS 30.0%
! TCCATTTGAAACTATTGAAG+AGG + chr8_1:6810811-6810830 Msa1175470:CDS 30.0%
TCCTCTTCAATAGTTTCAAA+TGG - chr8_1:6810815-6810834 None:intergenic 30.0%
GTCAATTCGATGATTATTGA+CGG + chr8_1:6810845-6810864 Msa1175470:CDS 30.0%
TCAATTCGATGATTATTGAC+GGG + chr8_1:6810846-6810865 Msa1175470:CDS 30.0%
TTGGATGAAATGAAATGTCT+AGG + chr8_1:6811097-6811116 Msa1175470:intron 30.0%
! CTTTTCTTTATACTGTGATG+TGG + chr8_1:6811164-6811183 Msa1175470:intron 30.0%
CGATATTCTTCATACTTCAA+CGG + chr8_1:6811266-6811285 Msa1175470:CDS 30.0%
!! ATTTCGACAATTTTGATGCA+TGG - chr8_1:6811323-6811342 None:intergenic 30.0%
! GTTTTTGCGTTTTCTTATAG+TGG - chr8_1:6811526-6811545 None:intergenic 30.0%
TCATTATTAGTTCAGTTGCT+TGG - chr8_1:6811619-6811638 None:intergenic 30.0%
AATTAGAACTATGTCTCTTG+AGG - chr8_1:6811741-6811760 None:intergenic 30.0%
CATATTGTGAACTTCTGATA+AGG + chr8_1:6811873-6811892 Msa1175470:three_prime_UTR 30.0%
AGAGAGATATGAAGAGAAAG+TGG - chr8_1:6809352-6809371 None:intergenic 35.0%
TACTTGCATACATCAACTTC+AGG - chr8_1:6809559-6809578 None:intergenic 35.0%
ATGTATGCAAGTATGAACCT+TGG + chr8_1:6809566-6809585 Msa1175470:CDS 35.0%
TGTATGCAAGTATGAACCTT+GGG + chr8_1:6809567-6809586 Msa1175470:CDS 35.0%
TAAAATCAGATGACCCAGAA+TGG + chr8_1:6809693-6809712 Msa1175470:CDS 35.0%
GACACAAGAAAAACCATTCT+GGG - chr8_1:6809709-6809728 None:intergenic 35.0%
!! AATGGTTTTTGGAAAGCTAC+CGG + chr8_1:6809779-6809798 Msa1175470:CDS 35.0%
CTTAATCTTTCGATCCTTTC+CGG - chr8_1:6809801-6809820 None:intergenic 35.0%
AGGATCGAAAGATTAAGGTT+AGG + chr8_1:6809804-6809823 Msa1175470:CDS 35.0%
GGATCGAAAGATTAAGGTTA+GGG + chr8_1:6809805-6809824 Msa1175470:CDS 35.0%
GATCGAAAGATTAAGGTTAG+GGG + chr8_1:6809806-6809825 Msa1175470:CDS 35.0%
ACAAACCTTGTCATCTTCAA+AGG - chr8_1:6809933-6809952 None:intergenic 35.0%
!!! AGCATTGGTTTGTTTTGTCT+TGG + chr8_1:6810333-6810352 Msa1175470:intron 35.0%
AGCTGAGAAAAAAGCTGAAA+AGG + chr8_1:6810431-6810450 Msa1175470:CDS 35.0%
! AGTTTCTTGATTTTCGTGGT+CGG - chr8_1:6810508-6810527 None:intergenic 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_1:6810529-6810548 Msa1175470:intron 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_1:6810611-6810630 None:intergenic 35.0%
! GCTCATTTTCAGAGATTGAA+GGG - chr8_1:6810721-6810740 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_1:6810722-6810741 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_1:6810721-6810740 Msa1175470:CDS 35.0%
CAATTCGATGATTATTGACG+GGG + chr8_1:6810847-6810866 Msa1175470:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_1:6810899-6810918 Msa1175470:CDS 35.0%
TATTAGTGAACCATCCAATG+CGG + chr8_1:6811008-6811027 Msa1175470:intron 35.0%
TTTCTTGAACATCCTAGTTC+AGG + chr8_1:6811291-6811310 Msa1175470:CDS 35.0%
AAATTGTCGAAATCAACGCA+TGG + chr8_1:6811330-6811349 Msa1175470:CDS 35.0%
! AGTACCTTTCGAGATGATTT+TGG + chr8_1:6811417-6811436 Msa1175470:CDS 35.0%
! GTACCTTTCGAGATGATTTT+GGG + chr8_1:6811418-6811437 Msa1175470:CDS 35.0%
! TACCTTTCGAGATGATTTTG+GGG + chr8_1:6811419-6811438 Msa1175470:CDS 35.0%
TTCAACTGCAGATATACCTT+TGG + chr8_1:6811464-6811483 Msa1175470:CDS 35.0%
ATACAATTGATCGTCTCCAA+AGG - chr8_1:6811483-6811502 None:intergenic 35.0%
!! TTGCGTTTTCTTATAGTGGA+AGG - chr8_1:6811522-6811541 None:intergenic 35.0%
! CCATTTTACAACTGTTCGTA+AGG - chr8_1:6811764-6811783 None:intergenic 35.0%
CCTTACGAACAGTTGTAAAA+TGG + chr8_1:6811761-6811780 Msa1175470:three_prime_UTR 35.0%
! TAGTGTGTGTGAGAGTTTTG+AGG - chr8_1:6809280-6809299 None:intergenic 40.0%
ATCTGAATCCAACAGGAACA+TGG - chr8_1:6809453-6809472 None:intergenic 40.0%
CTTACAAGCTCTTCATCTGT+TGG - chr8_1:6809481-6809500 None:intergenic 40.0%
! TTTTTACCTGGTAACTCCCA+AGG - chr8_1:6809586-6809605 None:intergenic 40.0%
!!! ATCTTTTTCAGCTTGTTCCG+TGG + chr8_1:6809670-6809689 Msa1175470:intron 40.0%
! TGGGTCATCTGATTTTACCA+CGG - chr8_1:6809690-6809709 None:intergenic 40.0%
GGACACAAGAAAAACCATTC+TGG - chr8_1:6809710-6809729 None:intergenic 40.0%
!! TTTTTGGAAAGCTACCGGAA+AGG + chr8_1:6809784-6809803 Msa1175470:CDS 40.0%
CGGAAAGGATCGAAAGATTA+AGG + chr8_1:6809799-6809818 Msa1175470:CDS 40.0%
! TACCACCTTTGAAGATGACA+AGG + chr8_1:6809925-6809944 Msa1175470:CDS 40.0%
AACCTTGTCATCTTCAAAGG+TGG - chr8_1:6809930-6809949 None:intergenic 40.0%
TTCAGAACAGCCAATCAGAT+AGG - chr8_1:6810130-6810149 None:intergenic 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_1:6810543-6810562 None:intergenic 40.0%
! CATTTTCAGAGATTGAAGGG+AGG - chr8_1:6810718-6810737 None:intergenic 40.0%
! CTAAAATAGGCATCGTGAAG+TGG - chr8_1:6810767-6810786 None:intergenic 40.0%
GATGATTATTGACGGGGATT+TGG + chr8_1:6810853-6810872 Msa1175470:CDS 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_1:6810897-6810916 None:intergenic 40.0%
TAAAACTCATGTCACCGCAT+TGG - chr8_1:6811025-6811044 None:intergenic 40.0%
!! TACCACATTTTAGCAATGCG+TGG + chr8_1:6811043-6811062 Msa1175470:intron 40.0%
! ACCTTTCGAGATGATTTTGG+GGG + chr8_1:6811420-6811439 Msa1175470:CDS 40.0%
!! AGATGATTTTGGGGGATTAG+AGG + chr8_1:6811428-6811447 Msa1175470:CDS 40.0%
ATCTGCAGTTGAATCACAAG+AGG - chr8_1:6811457-6811476 None:intergenic 40.0%
! AGCTCTTTTCGACATGAAGA+TGG - chr8_1:6811568-6811587 None:intergenic 40.0%
! TCGAAAAGAGCTGCTTTAAG+AGG + chr8_1:6811576-6811595 Msa1175470:CDS 40.0%
ACCACTAAGCTAACACTTCA+TGG - chr8_1:6811700-6811719 None:intergenic 40.0%
GTCAAGAGTCGGAGGAAATA+AGG - chr8_1:6809431-6809450 None:intergenic 45.0%
ACAGGAACATGGTCAAGAGT+CGG - chr8_1:6809442-6809461 None:intergenic 45.0%
ACTCTTGACCATGTTCCTGT+TGG + chr8_1:6809442-6809461 Msa1175470:CDS 45.0%
GGTCTGAATCTGAATCCAAC+AGG - chr8_1:6809460-6809479 None:intergenic 45.0%
TATGAACCTTGGGAGTTACC+AGG + chr8_1:6809577-6809596 Msa1175470:CDS 45.0%
TACTATAGTGGTCGTGTTCC+TGG + chr8_1:6809866-6809885 Msa1175470:CDS 45.0%
! TTCCTGGTGTTAAAAGCAGC+TGG + chr8_1:6809882-6809901 Msa1175470:CDS 45.0%
! TCCTGGTGTTAAAAGCAGCT+GGG + chr8_1:6809883-6809902 Msa1175470:CDS 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_1:6810489-6810508 None:intergenic 45.0%
ATTGACGGGGATTTGGACAA+CGG + chr8_1:6810860-6810879 Msa1175470:CDS 45.0%
CACCACGCATTGCTAAAATG+TGG - chr8_1:6811048-6811067 None:intergenic 45.0%
TCCCCCAAAATCATCTCGAA+AGG - chr8_1:6811424-6811443 None:intergenic 45.0%
! CTTTTCGACATGAAGATGGC+TGG - chr8_1:6811564-6811583 None:intergenic 45.0%
!! GCTGCTTTAAGAGGATCTTG+AGG + chr8_1:6811585-6811604 Msa1175470:CDS 45.0%
! GCCATGAAGTGTTAGCTTAG+TGG + chr8_1:6811696-6811715 Msa1175470:three_prime_UTR 45.0%
!!! ACCCAGCTGCTTTTAACACC+AGG - chr8_1:6809887-6809906 None:intergenic 50.0%
CATCGTGAAGTGGCGAGTTT+GGG - chr8_1:6810757-6810776 None:intergenic 50.0%
!!! CCATTTTCAACGACTCGGTC+TGG - chr8_1:6810892-6810911 None:intergenic 50.0%
CCAGACCGAGTCGTTGAAAA+TGG + chr8_1:6810889-6810908 Msa1175470:CDS 50.0%
TGCTGAAGTAGTCTCTACGC+CGG + chr8_1:6810937-6810956 Msa1175470:CDS 50.0%
ACTCATGTCACCGCATTGGA+TGG - chr8_1:6811021-6811040 None:intergenic 50.0%
GCATGGTATTCGCCTGAACT+AGG - chr8_1:6811306-6811325 None:intergenic 50.0%
!! TGGCTGGTCTTGGATGATAC+TGG - chr8_1:6811548-6811567 None:intergenic 50.0%
!! GACATGAAGATGGCTGGTCT+TGG - chr8_1:6811558-6811577 None:intergenic 50.0%
GGAACATGGTCAAGAGTCGG+AGG - chr8_1:6809439-6809458 None:intergenic 55.0%
GTGAAGTGGCGAGTTTGGGA+TGG - chr8_1:6810753-6810772 None:intergenic 55.0%
GCATCGTGAAGTGGCGAGTT+TGG - chr8_1:6810758-6810777 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 6809208 6811980 6809208 ID=Msa1175470;Name=Msa1175470
chr8_1 mRNA 6809208 6811980 6809208 ID=Msa1175470-mRNA-1;Parent=Msa1175470;Name=Msa1175470-mRNA-1;_AED=0.24;_eAED=0.24;_QI=213|1|1|1|1|1|5|375|413
chr8_1 exon 6809208 6809598 6809208 ID=Msa1175470-mRNA-1:exon:2501;Parent=Msa1175470-mRNA-1
chr8_1 exon 6809681 6809946 6809681 ID=Msa1175470-mRNA-1:exon:2502;Parent=Msa1175470-mRNA-1
chr8_1 exon 6810399 6810545 6810399 ID=Msa1175470-mRNA-1:exon:2503;Parent=Msa1175470-mRNA-1
chr8_1 exon 6810653 6810958 6810653 ID=Msa1175470-mRNA-1:exon:2504;Parent=Msa1175470-mRNA-1
chr8_1 exon 6811261 6811980 6811261 ID=Msa1175470-mRNA-1:exon:2505;Parent=Msa1175470-mRNA-1
chr8_1 five_prime_UTR 6809208 6809420 6809208 ID=Msa1175470-mRNA-1:five_prime_utr;Parent=Msa1175470-mRNA-1
chr8_1 CDS 6809421 6809598 6809421 ID=Msa1175470-mRNA-1:cds;Parent=Msa1175470-mRNA-1
chr8_1 CDS 6809681 6809946 6809681 ID=Msa1175470-mRNA-1:cds;Parent=Msa1175470-mRNA-1
chr8_1 CDS 6810399 6810545 6810399 ID=Msa1175470-mRNA-1:cds;Parent=Msa1175470-mRNA-1
chr8_1 CDS 6810653 6810958 6810653 ID=Msa1175470-mRNA-1:cds;Parent=Msa1175470-mRNA-1
chr8_1 CDS 6811261 6811605 6811261 ID=Msa1175470-mRNA-1:cds;Parent=Msa1175470-mRNA-1
chr8_1 three_prime_UTR 6811606 6811980 6811606 ID=Msa1175470-mRNA-1:three_prime_utr;Parent=Msa1175470-mRNA-1
Gene Sequence

>Msa1175470

ATGACAACCTTATTTCCTCCGACTCTTGACCATGTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTTGTAAGCCACTATCTCAAAAACAAGTTACTTGATAACGATTCCATTGTCAACAATGTTATACCTGAAGTTGATGTATGCAAGTATGAACCTTGGGAGTTACCAGCTTGTTCCGTGGTAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTATTGATTATAAGTATGCAAAGAGTAAGAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACCGGAAAGGATCGAAAGATTAAGGTTAGGGGTAGCAATAATATTATTGGGATTAAGAAGACTCTTGTTTACTATAGTGGTCGTGTTCCTGGTGTTAAAAGCAGCTGGGTGATTCATGAATATCATGATACCACCTTTGAAGATGACAAGCGGACTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAAAGGAAGCTGAAACAGATATTTGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACCACGAAAATCAAGAAACTTTTGAAGGAATTCCTGATGTGAGTGATGATACTTCGCCAGAAATAAATATGGAATCAATATTTCAGGCGGCAGAAAAATACCTCCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCGCCACTTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCATAGTCCATTTGAAACTATTGAAGAGGAAGATAAGTTCGTCAATTCGATGATTATTGACGGGGATTTGGACAACGGTCATGTCCAGACCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTACGCCGTGTGGCGATATTCTTCATACTTCAACGGCATTTCTTGAACATCCTAGTTCAGGCGAATACCATGCATCAAAATTGTCGAAATCAACGCATGGTAATGTTCATGAAAGCACCTGTTTTCTATCTTTTAACAATGGTGAAATTGAAGACAACAACGAGAGTACCTTTCGAGATGATTTTGGGGGATTAGAGGCATCCTCTTGTGATTCAACTGCAGATATACCTTTGGAGACGATCAATTGTATTGAAATTTCTAGTTCACCTTCCACTATAAGAAAACGCAAAAACCAGTATCATCCAAGACCAGCCATCTTCATGTCGAAAAGAGCTGCTTTAAGAGGATCTTGA
Protein sequence

>Msa1175470

MTTLFPPTLDHVPVGFRFRPTDEELVSHYLKNKLLDNDSIVNNVIPEVDVCKYEPWELPACSVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNNGFWKATGKDRKIKVRGSNNIIGIKKTLVYYSGRVPGVKSSWVIHEYHDTTFEDDKRTFVLCRLMKKAEKKAEKEAETDICDEGEPSRHMSSDHENQETFEGIPDVSDDTSPEINMESIFQAAEKYLPSISENEQEVSIPNSPLHDAYFRNDNIIVHSPFETIEEEDKFVNSMIIDGDLDNGHVQTESLKMVYYGSSDTDAEVVSTPCGDILHTSTAFLEHPSSGEYHASKLSKSTHGNVHESTCFLSFNNGEIEDNNESTFRDDFGGLEASSCDSTADIPLETINCIEISSSPSTIRKRKNQYHPRPAIFMSKRAALRGS*