AlfalfaGEDB | Msa1176440

M. sativa cultivar zhongmu-4 / Msa1176440

KEGG: -
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF14215.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176440	XP_013444608.1	93.740	623	16	1	1	600	1	623	0.0	1191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176440	sp\|A0A3Q7ELQ2\|MTB1_SOLLC	59.451	619	199	11	9	600	4	597	0.0	691

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1176440	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176440	MtrunA17_Chr7g0275821	71.250	240	51	7	368	600	189	417	1.72e-95	299
Msa1176440	MtrunA17_Chr7g0275821	59.091	176	57	4	12	173	8	182	2.35e-59	204
Msa1176440	MtrunA17_Chr7g0260841	35.235	596	270	21	14	595	9	502	1.16e-83	270
Msa1176440	MtrunA17_Chr8g0366751	44.700	217	97	5	400	594	424	639	2.35e-44	167
Msa1176440	MtrunA17_Chr8g0366751	35.714	196	108	9	51	241	52	234	2.50e-21	98.2
Msa1176440	MtrunA17_Chr5g0411341	43.243	222	101	4	396	594	451	670	9.41e-43	163
Msa1176440	MtrunA17_Chr5g0411341	31.343	268	154	8	51	296	43	302	3.49e-22	101
Msa1176440	MtrunA17_Chr8g0346161	39.535	172	95	1	415	577	271	442	5.56e-34	135
Msa1176440	MtrunA17_Chr8g0346151	41.799	189	96	4	415	590	259	446	8.33e-34	134
Msa1176440	MtrunA17_Chr5g0411331	31.472	197	127	4	51	247	26	214	1.33e-21	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176440	AT1G01260.1	48.357	639	223	17	9	600	4	582	0.0	528
Msa1176440	AT1G01260.2	48.357	639	223	17	9	600	4	582	0.0	528
Msa1176440	AT1G01260.3	48.357	639	223	17	9	600	4	582	0.0	528
Msa1176440	AT2G46510.1	45.928	614	234	15	13	599	8	550	3.33e-168	491
Msa1176440	AT4G17880.1	31.856	609	346	16	12	597	23	585	2.01e-75	251
Msa1176440	AT1G32640.1	33.505	582	319	16	51	593	66	618	3.09e-75	252
Msa1176440	AT4G16430.1	44.444	234	101	7	374	595	251	467	3.30e-51	183
Msa1176440	AT4G16430.1	38.610	259	136	9	9	260	2	244	5.18e-41	155
Msa1176440	AT5G46760.1	45.413	218	103	5	390	593	369	584	1.59e-46	173
Msa1176440	AT5G46830.1	27.395	522	285	14	71	577	49	491	4.51e-36	142

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Find 117 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAATTCCATTCCCATT+CGG	0.503424	8_1:+8538796	None:intergenic
AAATCCTGCCCGAAAATCTT+GGG	0.454281	8_1:+8538892	None:intergenic
AAATGGATGATAGGCAATCA+TGG	0.495557	8_1:-8538828	Msa1176440:CDS
AACACAATCATCGTTTGCTA+GGG	0.513978	8_1:-8539076	Msa1176440:CDS
AAGAAAGAACATCTCCGTAT+CGG	0.609322	8_1:+8539353	None:intergenic
AAGAACAATAGTAATAATAA+TGG	0.401905	8_1:-8538976	Msa1176440:CDS
AAGATTGAAGTGGGTTTAGG+AGG	0.500123	8_1:-8539798	Msa1176440:CDS
AAGCTCGTTGATGTAAGCAA+TGG	0.643072	8_1:+8538215	None:intergenic
AAGCTTCATGCGACATTTGG+TGG	0.467090	8_1:-8539417	Msa1176440:CDS
AAGTCGATTTCATCGTTGGA+TGG	0.552935	8_1:-8539051	Msa1176440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGAAGATGAAAAAGCTA+TGG	-	chr8_1:8537890-8537909	Msa1176440:CDS	30.0%
CCAACTTTCAAACAAGAAAA+AGG	+	chr8_1:8538647-8538666	None:intergenic	30.0%
ATAATCATAGTAGAGTTGAG+GGG	-	chr8_1:8538729-8538748	Msa1176440:intron	30.0%
CTATTAGGAAAATGGATGAT+AGG	-	chr8_1:8538816-8538835	Msa1176440:CDS	30.0%
AAACTAATTCCATTCCCATT+CGG	+	chr8_1:8538860-8538879	None:intergenic	30.0%
TTGTCCATCTTGGAAATATT+CGG	+	chr8_1:8539398-8539417	None:intergenic	30.0%
GTGACTTAATTATGAATGTG+TGG	+	chr8_1:8539736-8539755	None:intergenic	30.0%
GAATGAAGATGAAAAAGCTA+TGG	-	chr8_1:8537890-8537909	Msa1176440:CDS	30.0%
CCAACTTTCAAACAAGAAAA+AGG	+	chr8_1:8538647-8538666	None:intergenic	30.0%
ATAATCATAGTAGAGTTGAG+GGG	-	chr8_1:8538729-8538748	Msa1176440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	8537852	8539823	8537852	ID=Msa1176440;Name=Msa1176440
chr8_1	mRNA	8537852	8539823	8537852	ID=Msa1176440-mRNA-1;Parent=Msa1176440;Name=Msa1176440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|600
chr8_1	exon	8538764	8539823	8538764	ID=Msa1176440-mRNA-1:exon:2904;Parent=Msa1176440-mRNA-1
chr8_1	exon	8537852	8538594	8537852	ID=Msa1176440-mRNA-1:exon:2903;Parent=Msa1176440-mRNA-1
chr8_1	CDS	8538764	8539823	8538764	ID=Msa1176440-mRNA-1:cds;Parent=Msa1176440-mRNA-1
chr8_1	CDS	8537852	8538594	8537852	ID=Msa1176440-mRNA-1:cds;Parent=Msa1176440-mRNA-1

Gene Sequence

>Msa1176440

ATGAAGATTGAAGTGGGTTTAGGAGGAAATAGGTTATGGAATGAAGATGAAAAAGCTATGGTGGTTGAAGTTTTAGGTGTTAATGCTTTTGATTATTTGGTTACAAATTCAGTTTCAAATGAGAATCTTTTGACAGCAATTGGGAGTGGTGAGAATCTTGAAAACAAGCTTTCTGATCTAGTTGAAAGATCTAACGTTTCGAATTTCAGTTGGAATTATGCGATTTTTTGGCGAATTTCTCAGTCAAAGTTTGGTGATTGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGGGAACCTAAAGAGGAGGAAAAGGAACAGAATTTGGGGATGAAAAGTGTTGTTGAAGATGAAAAACAACAAAGAATGAGGAAAAGTGTGTTGCAGAAGCTTCATGCGACATTTGGTGGTTTAGATGATGACAATTATGCTTTTGGATTGGACCGTGTGACCGATACGGAGATGTTCTTTCTTGCATCAATGTATTTCTCTTTTCCTAATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGTTATGTGATGCATTGAAATCTAGTAGCTCTGATTATTGTGTTAGGGCTTTTTTGGCTAAATCTGTTGGATTTAAGACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAACGGTTGGCGAGAGCGTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCAACACAATCATCGTTTGCTAGGGTTAAGTCGATTTCATCGTTGGATGGAAAGAGAGACGAGAATGCTCCTTTTTCTTGTTTGAAAGTTGGGGAGAGTGTTAAGAACAATAGTAATAATAATGGCAATCTTCATCTTCATCATCAGAATAATAATAATCATAGTAGAGTTGAGGGGATTGGAGTTCCCAAGATTTTCGGGCAGGATTTGAACTCGGCCACACATTTTCGGGAGAAACTTGCTATTAGGAAAATGGATGATAGGCAATCATGGGGAGGCCGTCCGAATGGGAATGGAATTAGTTTTCCAAATGGTGTTCAGGGTTCAAGTTGGAGAGCCGAGCTAGCAAACGGTGTGAGGCAAGATTTCGTGCTCAACAACTATCAACAGCAACGGAAGCCACAAATGCAAATTGATTTTTCAGGAGCCACATCGAGACCTTCAGTGAGATCAATTGTTGGTGAATCGGAGCTTTCTGATGTTGAAGCTTCTTGCAGGGAGGAGAATCCTAGTCCCTCCGATGATAGGAGGCCAAGGAAACGTGGCAGAAAGCCAGCAAATGGAAGGGTAGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAGCGTTTTTACGCATTACGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCATCTTTGTTAGGAGATGCCATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGACGATGGAATCCGAGAGAGAGCAATTAGGAATCGCTTCTAGAGATGGATCATCATCGGTATTGCCAGCAAACTCTAGAGCAGAAAATCATCAAAGCAGTGCTCCTGATATCGATATTCAAGCTGCACAAGATGGAGTTATGGTAAAGGTGAGTTGTTCTATTGATGTTCATCCTATTTCAAAACTCGTCCAATCATTCAAAGACACCGAAATCGATATCGTTGAGTCGAAACTCAATGCTGCAAATGATACTGTCTTCCACACATTCATAATTAAGTCACAAGGTTCCGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCAAAGAAACCAACTCCTTATAG

Protein sequence

>Msa1176440

MKIEVGLGGNRLWNEDEKAMVVEVLGVNAFDYLVTNSVSNENLLTAIGSGENLENKLSDLVERSNVSNFSWNYAIFWRISQSKFGDWVLGWGDGCCREPKEEEKEQNLGMKSVVEDEKQQRMRKSVLQKLHATFGGLDDDNYAFGLDRVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSSSSDYCVRAFLAKSVGFKTIVLVPTDLGVVELGSVRTVGESVELLQTIKSVFSTQSSFARVKSISSLDGKRDENAPFSCLKVGESVKNNSNNNGNLHLHHQNNNNHSRVEGIGVPKIFGQDLNSATHFREKLAIRKMDDRQSWGGRPNGNGISFPNGVQGSSWRAELANGVRQDFVLNNYQQQRKPQMQIDFSGATSRPSVRSIVGESELSDVEASCREENPSPSDDRRPRKRGRKPANGRVEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREQLGIASRDGSSSVLPANSRAENHQSSAPDIDIQAAQDGVMVKVSCSIDVHPISKLVQSFKDTEIDIVESKLNAANDTVFHTFIIKSQGSEQLTKEKLIAAFSKETNSL*