Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176660 | XP_003603053.1 | 93.407 | 273 | 15 | 3 | 1 | 272 | 1 | 271 | 1.26e-169 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176660 | sp|Q9SND4|HEC2_ARATH | 80.000 | 110 | 21 | 1 | 146 | 254 | 92 | 201 | 2.25e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1176660 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176660 | MtrunA17_Chr3g0134001 | 93.407 | 273 | 15 | 3 | 1 | 272 | 1 | 271 | 1.16e-173 | 479 |
| Msa1176660 | MtrunA17_Chr8g0375121 | 57.921 | 202 | 56 | 7 | 46 | 245 | 28 | 202 | 6.77e-52 | 170 |
| Msa1176660 | MtrunA17_Chr5g0402161 | 63.354 | 161 | 54 | 3 | 91 | 250 | 56 | 212 | 2.31e-49 | 163 |
| Msa1176660 | MtrunA17_Chr8g0384141 | 78.022 | 91 | 20 | 0 | 146 | 236 | 87 | 177 | 7.96e-47 | 157 |
| Msa1176660 | MtrunA17_Chr2g0330641 | 54.464 | 112 | 50 | 1 | 145 | 255 | 261 | 372 | 7.47e-28 | 110 |
| Msa1176660 | MtrunA17_Chr8g0341421 | 56.731 | 104 | 41 | 1 | 145 | 244 | 296 | 399 | 1.92e-27 | 109 |
| Msa1176660 | MtrunA17_Chr7g0243041 | 70.370 | 54 | 16 | 0 | 179 | 232 | 32 | 85 | 1.12e-21 | 88.6 |
| Msa1176660 | MtrunA17_Chr5g0435021 | 64.286 | 56 | 20 | 0 | 180 | 235 | 225 | 280 | 1.30e-18 | 84.0 |
| Msa1176660 | MtrunA17_Chr1g0152651 | 62.963 | 54 | 20 | 0 | 182 | 235 | 283 | 336 | 1.11e-17 | 81.6 |
| Msa1176660 | MtrunA17_Chr1g0207301 | 52.239 | 67 | 32 | 0 | 169 | 235 | 284 | 350 | 2.38e-17 | 80.9 |
| Msa1176660 | MtrunA17_Chr1g0207311 | 45.679 | 81 | 44 | 0 | 182 | 262 | 205 | 285 | 2.46e-17 | 79.7 |
| Msa1176660 | MtrunA17_Chr5g0393721 | 46.154 | 78 | 42 | 0 | 182 | 259 | 233 | 310 | 5.21e-17 | 79.3 |
| Msa1176660 | MtrunA17_Chr3g0134741 | 53.968 | 63 | 29 | 0 | 173 | 235 | 229 | 291 | 5.92e-16 | 76.3 |
| Msa1176660 | MtrunA17_Chr4g0074161 | 53.030 | 66 | 30 | 1 | 180 | 244 | 213 | 278 | 1.37e-14 | 73.2 |
| Msa1176660 | MtrunA17_Chr1g0190731 | 45.000 | 80 | 43 | 1 | 166 | 244 | 186 | 265 | 1.82e-14 | 72.4 |
| Msa1176660 | MtrunA17_Chr1g0179061 | 57.407 | 54 | 23 | 0 | 183 | 236 | 180 | 233 | 2.47e-13 | 68.2 |
| Msa1176660 | MtrunA17_Chr2g0311101 | 48.000 | 75 | 32 | 1 | 169 | 236 | 158 | 232 | 4.01e-13 | 68.2 |
| Msa1176660 | MtrunA17_Chr4g0014771 | 54.386 | 57 | 25 | 1 | 183 | 238 | 128 | 184 | 1.05e-11 | 62.4 |
| Msa1176660 | MtrunA17_Chr2g0323091 | 51.852 | 54 | 26 | 0 | 183 | 236 | 146 | 199 | 1.11e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176660 | AT3G50330.1 | 80.000 | 110 | 21 | 1 | 146 | 254 | 92 | 201 | 2.28e-46 | 155 |
| Msa1176660 | AT5G67060.2 | 88.298 | 94 | 11 | 0 | 146 | 239 | 83 | 176 | 3.90e-46 | 154 |
| Msa1176660 | AT5G67060.1 | 88.298 | 94 | 11 | 0 | 146 | 239 | 95 | 188 | 5.83e-46 | 154 |
| Msa1176660 | AT4G00120.1 | 70.787 | 89 | 26 | 0 | 148 | 236 | 87 | 175 | 2.12e-37 | 131 |
| Msa1176660 | AT3G21330.1 | 66.304 | 92 | 31 | 0 | 145 | 236 | 241 | 332 | 8.77e-37 | 134 |
| Msa1176660 | AT5G09750.1 | 76.667 | 90 | 21 | 0 | 146 | 235 | 92 | 181 | 1.91e-34 | 124 |
| Msa1176660 | AT5G01305.1 | 69.492 | 59 | 18 | 0 | 174 | 232 | 38 | 96 | 2.78e-21 | 88.6 |
| Msa1176660 | AT5G43175.1 | 50.725 | 69 | 34 | 0 | 167 | 235 | 126 | 194 | 2.06e-18 | 82.0 |
| Msa1176660 | AT4G33880.1 | 64.815 | 54 | 19 | 0 | 182 | 235 | 275 | 328 | 3.58e-18 | 83.6 |
| Msa1176660 | AT1G27740.1 | 52.941 | 68 | 32 | 0 | 168 | 235 | 162 | 229 | 5.94e-18 | 81.6 |
| Msa1176660 | AT5G37800.1 | 53.333 | 75 | 28 | 1 | 168 | 235 | 189 | 263 | 6.27e-18 | 82.0 |
| Msa1176660 | AT1G66470.1 | 63.636 | 55 | 20 | 0 | 181 | 235 | 203 | 257 | 1.21e-17 | 81.3 |
| Msa1176660 | AT2G14760.1 | 62.963 | 54 | 20 | 0 | 182 | 235 | 246 | 299 | 4.29e-17 | 80.1 |
| Msa1176660 | AT4G30980.1 | 51.948 | 77 | 36 | 1 | 169 | 244 | 126 | 202 | 6.51e-16 | 76.6 |
| Msa1176660 | AT2G24260.2 | 51.852 | 81 | 31 | 3 | 171 | 244 | 28 | 107 | 9.27e-16 | 75.1 |
| Msa1176660 | AT4G30980.2 | 51.948 | 77 | 36 | 1 | 169 | 244 | 174 | 250 | 1.22e-15 | 76.3 |
| Msa1176660 | AT2G24260.1 | 48.810 | 84 | 36 | 2 | 168 | 244 | 127 | 210 | 1.89e-15 | 75.5 |
| Msa1176660 | AT5G58010.1 | 50.000 | 76 | 37 | 1 | 170 | 244 | 96 | 171 | 1.34e-14 | 72.8 |
| Msa1176660 | AT2G14760.3 | 50.746 | 67 | 20 | 1 | 182 | 235 | 246 | 312 | 7.79e-14 | 70.9 |
Find 55 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAAACCATGGTATTAT+TGG | 0.168613 | 8_1:+8857649 | None:intergenic |
| ATCTTCACGTTTCTTCTCTT+TGG | 0.198805 | 8_1:+8857352 | None:intergenic |
| ACAGTTGCTGGTTCAGGATT+AGG | 0.254855 | 8_1:-8857127 | Msa1176660:CDS |
| TGTTGTTGTTGGAACCTTAA+TGG | 0.283073 | 8_1:+8857547 | None:intergenic |
| GATTCTGGGTCTATGTAAAT+TGG | 0.284997 | 8_1:+8857385 | None:intergenic |
| CCGTTAGATGAAGAAAATTC+AGG | 0.301231 | 8_1:+8857784 | None:intergenic |
| GATCGTAATGTTGATCGTTA+TGG | 0.304956 | 8_1:-8857073 | Msa1176660:CDS |
| CTTCAGGAGCCAACAGTAAA+AGG | 0.313374 | 8_1:-8857150 | Msa1176660:CDS |
| CAGTTGCTGGTTCAGGATTA+GGG | 0.322129 | 8_1:-8857126 | Msa1176660:CDS |
| ACAACTCTACTGCACCATTA+AGG | 0.339069 | 8_1:-8857561 | Msa1176660:CDS |
| AAAAGGACAGTTGCTGGTTC+AGG | 0.344600 | 8_1:-8857133 | Msa1176660:CDS |
| TCACTGCAGGAACGTGCTTC+AGG | 0.355705 | 8_1:-8857166 | Msa1176660:CDS |
| AACCATGGTATTATTGGATT+AGG | 0.366504 | 8_1:+8857655 | None:intergenic |
| CCGTCAGATCAACAATTCTA+TGG | 0.368765 | 8_1:-8857733 | Msa1176660:CDS |
| GATTGTGTTTGTGTTTGTTA+TGG | 0.370441 | 8_1:+8857597 | None:intergenic |
| TAAGGCTTAGGCAATGAAAC+AGG | 0.373028 | 8_1:+8857100 | None:intergenic |
| CTCGAATTCGAAAACATTAA+CGG | 0.373336 | 8_1:+8857517 | None:intergenic |
| TGGTGCAGTAGAGTTGTTAT+TGG | 0.394604 | 8_1:+8857567 | None:intergenic |
| ATCGTAATGTTGATCGTTAT+GGG | 0.398296 | 8_1:-8857072 | Msa1176660:CDS |
| CCTCCGAATGCGAACCATTA+CGG | 0.398684 | 8_1:-8857484 | Msa1176660:CDS |
| ATGATGAAGATGACTTTAAC+TGG | 0.403724 | 8_1:+8857854 | None:intergenic |
| TTCACGTTTCTTCTCTTTGG+TGG | 0.406987 | 8_1:+8857355 | None:intergenic |
| ACGGTGTTGTTTGTTGTTGT+TGG | 0.421243 | 8_1:+8857536 | None:intergenic |
| AACGATCAACATTACGATCT+TGG | 0.428866 | 8_1:+8857077 | None:intergenic |
| AACAGTAAAAGGACAGTTGC+TGG | 0.446300 | 8_1:-8857139 | Msa1176660:CDS |
| GTACCGTAATGGTTCGCATT+CGG | 0.449002 | 8_1:+8857481 | None:intergenic |
| CATGGTATTATTGGATTAGG+AGG | 0.465821 | 8_1:+8857658 | None:intergenic |
| AAACTCGATGGCGGCGATGA+GGG | 0.479160 | 8_1:-8857437 | Msa1176660:CDS |
| TGACGGTTGAAATTGATTGA+TGG | 0.483851 | 8_1:+8857750 | None:intergenic |
| CGTTAGATGAAGAAAATTCA+GGG | 0.499125 | 8_1:+8857785 | None:intergenic |
| AATAAGAATACTGCAAAGAA+TGG | 0.517132 | 8_1:-8857272 | Msa1176660:CDS |
| GGTACCAGGTGGAACTAAGA+TGG | 0.521420 | 8_1:-8857251 | Msa1176660:CDS |
| ATCGAGTTTATCTTCTCTGA+TGG | 0.521681 | 8_1:+8857451 | None:intergenic |
| TTACGATCTTGGTAAGGCTT+AGG | 0.545623 | 8_1:+8857088 | None:intergenic |
| TGTGTTTGTTATGGATTGTG+AGG | 0.557974 | 8_1:+8857606 | None:intergenic |
| TAAACTCGATGGCGGCGATG+AGG | 0.558838 | 8_1:-8857438 | Msa1176660:CDS |
| GATGGATACTGCATCAATGT+TGG | 0.564818 | 8_1:-8857233 | Msa1176660:CDS |
| GTGTTTGTTATGGATTGTGA+GGG | 0.568107 | 8_1:+8857607 | None:intergenic |
| CCGTAATGGTTCGCATTCGG+AGG | 0.570332 | 8_1:+8857484 | None:intergenic |
| TCAACATTACGATCTTGGTA+AGG | 0.575828 | 8_1:+8857082 | None:intergenic |
| GACACAGCTTAAGTCACTGC+AGG | 0.580951 | 8_1:-8857179 | Msa1176660:CDS |
| ATGGAGATGAAGTACCGTAA+TGG | 0.588679 | 8_1:+8857470 | None:intergenic |
| ATGGTATTATTGGATTAGGA+GGG | 0.590824 | 8_1:+8857659 | None:intergenic |
| CTCCTAATCCAATAATACCA+TGG | 0.622724 | 8_1:-8857657 | Msa1176660:CDS |
| CCATAGAATTGTTGATCTGA+CGG | 0.627985 | 8_1:+8857733 | None:intergenic |
| GTCATCTTCATCATCATCAG+AGG | 0.630073 | 8_1:-8857845 | Msa1176660:CDS |
| TTATCTATTAAATCTGCAAG+AGG | 0.636966 | 8_1:+8857682 | None:intergenic |
| ATCAGAGAAGATAAACTCGA+TGG | 0.640111 | 8_1:-8857449 | Msa1176660:CDS |
| GTATCCATCTTAGTTCCACC+TGG | 0.642640 | 8_1:+8857247 | None:intergenic |
| AAGGCTTAGGCAATGAAACA+GGG | 0.655130 | 8_1:+8857101 | None:intergenic |
| TGTCTAGCTGCAACACTCTG+AGG | 0.655671 | 8_1:+8857319 | None:intergenic |
| ATACTGCAAAGAATGGTACC+AGG | 0.680757 | 8_1:-8857265 | Msa1176660:CDS |
| AATGATGAAGATGAAAACCA+TGG | 0.699647 | 8_1:+8857640 | None:intergenic |
| CTGCAAAGAATGGTACCAGG+TGG | 0.704915 | 8_1:-8857262 | Msa1176660:CDS |
| AGAGAAGATAAACTCGATGG+CGG | 0.710472 | 8_1:-8857446 | Msa1176660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTATCTATTAAATCTGCAAG+AGG | + | chr8_1:8857255-8857274 | None:intergenic | 25.0% |
| ! | AATAAGAATACTGCAAAGAA+TGG | - | chr8_1:8857662-8857681 | Msa1176660:CDS | 25.0% |
| ! | TTATCTATTAAATCTGCAAG+AGG | + | chr8_1:8857255-8857274 | None:intergenic | 25.0% |
| ! | AATAAGAATACTGCAAAGAA+TGG | - | chr8_1:8857662-8857681 | Msa1176660:CDS | 25.0% |
| ATGATGAAGATGACTTTAAC+TGG | + | chr8_1:8857083-8857102 | None:intergenic | 30.0% | |
| CGTTAGATGAAGAAAATTCA+GGG | + | chr8_1:8857152-8857171 | None:intergenic | 30.0% | |
| ! | CCTGAATTTTCTTCATCTAA+CGG | - | chr8_1:8857150-8857169 | Msa1176660:CDS | 30.0% |
| ! | ATGGTATTATTGGATTAGGA+GGG | + | chr8_1:8857278-8857297 | None:intergenic | 30.0% |
| AACCATGGTATTATTGGATT+AGG | + | chr8_1:8857282-8857301 | None:intergenic | 30.0% | |
| GATGAAAACCATGGTATTAT+TGG | + | chr8_1:8857288-8857307 | None:intergenic | 30.0% | |
| AATGATGAAGATGAAAACCA+TGG | + | chr8_1:8857297-8857316 | None:intergenic | 30.0% | |
| ! | GATTGTGTTTGTGTTTGTTA+TGG | + | chr8_1:8857340-8857359 | None:intergenic | 30.0% |
| CTCGAATTCGAAAACATTAA+CGG | + | chr8_1:8857420-8857439 | None:intergenic | 30.0% | |
| ATCGTAATGTTGATCGTTAT+GGG | - | chr8_1:8857862-8857881 | Msa1176660:CDS | 30.0% | |
| ATGATGAAGATGACTTTAAC+TGG | + | chr8_1:8857083-8857102 | None:intergenic | 30.0% | |
| CGTTAGATGAAGAAAATTCA+GGG | + | chr8_1:8857152-8857171 | None:intergenic | 30.0% | |
| ! | CCTGAATTTTCTTCATCTAA+CGG | - | chr8_1:8857150-8857169 | Msa1176660:CDS | 30.0% |
| ! | ATGGTATTATTGGATTAGGA+GGG | + | chr8_1:8857278-8857297 | None:intergenic | 30.0% |
| AACCATGGTATTATTGGATT+AGG | + | chr8_1:8857282-8857301 | None:intergenic | 30.0% | |
| GATGAAAACCATGGTATTAT+TGG | + | chr8_1:8857288-8857307 | None:intergenic | 30.0% | |
| AATGATGAAGATGAAAACCA+TGG | + | chr8_1:8857297-8857316 | None:intergenic | 30.0% | |
| ! | GATTGTGTTTGTGTTTGTTA+TGG | + | chr8_1:8857340-8857359 | None:intergenic | 30.0% |
| CTCGAATTCGAAAACATTAA+CGG | + | chr8_1:8857420-8857439 | None:intergenic | 30.0% | |
| ATCGTAATGTTGATCGTTAT+GGG | - | chr8_1:8857862-8857881 | Msa1176660:CDS | 30.0% | |
| CCGTTAGATGAAGAAAATTC+AGG | + | chr8_1:8857153-8857172 | None:intergenic | 35.0% | |
| TGACGGTTGAAATTGATTGA+TGG | + | chr8_1:8857187-8857206 | None:intergenic | 35.0% | |
| CCATAGAATTGTTGATCTGA+CGG | + | chr8_1:8857204-8857223 | None:intergenic | 35.0% | |
| ! | CATGGTATTATTGGATTAGG+AGG | + | chr8_1:8857279-8857298 | None:intergenic | 35.0% |
| CTCCTAATCCAATAATACCA+TGG | - | chr8_1:8857277-8857296 | Msa1176660:CDS | 35.0% | |
| !! | GTGTTTGTTATGGATTGTGA+GGG | + | chr8_1:8857330-8857349 | None:intergenic | 35.0% |
| !! | TGTGTTTGTTATGGATTGTG+AGG | + | chr8_1:8857331-8857350 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGGAACCTTAA+TGG | + | chr8_1:8857390-8857409 | None:intergenic | 35.0% |
| ATCGAGTTTATCTTCTCTGA+TGG | + | chr8_1:8857486-8857505 | None:intergenic | 35.0% | |
| ATCAGAGAAGATAAACTCGA+TGG | - | chr8_1:8857485-8857504 | Msa1176660:CDS | 35.0% | |
| GATTCTGGGTCTATGTAAAT+TGG | + | chr8_1:8857552-8857571 | None:intergenic | 35.0% | |
| !!! | TTGGTGGTTTTACTGATTCT+GGG | + | chr8_1:8857566-8857585 | None:intergenic | 35.0% |
| !!! | TTTGGTGGTTTTACTGATTC+TGG | + | chr8_1:8857567-8857586 | None:intergenic | 35.0% |
| ATCTTCACGTTTCTTCTCTT+TGG | + | chr8_1:8857585-8857604 | None:intergenic | 35.0% | |
| TCAACATTACGATCTTGGTA+AGG | + | chr8_1:8857855-8857874 | None:intergenic | 35.0% | |
| AACGATCAACATTACGATCT+TGG | + | chr8_1:8857860-8857879 | None:intergenic | 35.0% | |
| GATCGTAATGTTGATCGTTA+TGG | - | chr8_1:8857861-8857880 | Msa1176660:CDS | 35.0% | |
| CCGTTAGATGAAGAAAATTC+AGG | + | chr8_1:8857153-8857172 | None:intergenic | 35.0% | |
| TGACGGTTGAAATTGATTGA+TGG | + | chr8_1:8857187-8857206 | None:intergenic | 35.0% | |
| CCATAGAATTGTTGATCTGA+CGG | + | chr8_1:8857204-8857223 | None:intergenic | 35.0% | |
| ! | CATGGTATTATTGGATTAGG+AGG | + | chr8_1:8857279-8857298 | None:intergenic | 35.0% |
| CTCCTAATCCAATAATACCA+TGG | - | chr8_1:8857277-8857296 | Msa1176660:CDS | 35.0% | |
| !! | GTGTTTGTTATGGATTGTGA+GGG | + | chr8_1:8857330-8857349 | None:intergenic | 35.0% |
| !! | TGTGTTTGTTATGGATTGTG+AGG | + | chr8_1:8857331-8857350 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGGAACCTTAA+TGG | + | chr8_1:8857390-8857409 | None:intergenic | 35.0% |
| ATCGAGTTTATCTTCTCTGA+TGG | + | chr8_1:8857486-8857505 | None:intergenic | 35.0% | |
| ATCAGAGAAGATAAACTCGA+TGG | - | chr8_1:8857485-8857504 | Msa1176660:CDS | 35.0% | |
| GATTCTGGGTCTATGTAAAT+TGG | + | chr8_1:8857552-8857571 | None:intergenic | 35.0% | |
| !!! | TTGGTGGTTTTACTGATTCT+GGG | + | chr8_1:8857566-8857585 | None:intergenic | 35.0% |
| !!! | TTTGGTGGTTTTACTGATTC+TGG | + | chr8_1:8857567-8857586 | None:intergenic | 35.0% |
| ATCTTCACGTTTCTTCTCTT+TGG | + | chr8_1:8857585-8857604 | None:intergenic | 35.0% | |
| TCAACATTACGATCTTGGTA+AGG | + | chr8_1:8857855-8857874 | None:intergenic | 35.0% | |
| AACGATCAACATTACGATCT+TGG | + | chr8_1:8857860-8857879 | None:intergenic | 35.0% | |
| GATCGTAATGTTGATCGTTA+TGG | - | chr8_1:8857861-8857880 | Msa1176660:CDS | 35.0% | |
| GTCATCTTCATCATCATCAG+AGG | - | chr8_1:8857089-8857108 | Msa1176660:CDS | 40.0% | |
| CCGTCAGATCAACAATTCTA+TGG | - | chr8_1:8857201-8857220 | Msa1176660:CDS | 40.0% | |
| TGGTGCAGTAGAGTTGTTAT+TGG | + | chr8_1:8857370-8857389 | None:intergenic | 40.0% | |
| ACAACTCTACTGCACCATTA+AGG | - | chr8_1:8857373-8857392 | Msa1176660:CDS | 40.0% | |
| !! | ACGGTGTTGTTTGTTGTTGT+TGG | + | chr8_1:8857401-8857420 | None:intergenic | 40.0% |
| !! | ATGGAGATGAAGTACCGTAA+TGG | + | chr8_1:8857467-8857486 | None:intergenic | 40.0% |
| AGAGAAGATAAACTCGATGG+CGG | - | chr8_1:8857488-8857507 | Msa1176660:CDS | 40.0% | |
| TTCACGTTTCTTCTCTTTGG+TGG | + | chr8_1:8857582-8857601 | None:intergenic | 40.0% | |
| ATACTGCAAAGAATGGTACC+AGG | - | chr8_1:8857669-8857688 | Msa1176660:CDS | 40.0% | |
| GATGGATACTGCATCAATGT+TGG | - | chr8_1:8857701-8857720 | Msa1176660:CDS | 40.0% | |
| ! | AGCAACTGTCCTTTTACTGT+TGG | + | chr8_1:8857796-8857815 | None:intergenic | 40.0% |
| AACAGTAAAAGGACAGTTGC+TGG | - | chr8_1:8857795-8857814 | Msa1176660:CDS | 40.0% | |
| AAGGCTTAGGCAATGAAACA+GGG | + | chr8_1:8857836-8857855 | None:intergenic | 40.0% | |
| TAAGGCTTAGGCAATGAAAC+AGG | + | chr8_1:8857837-8857856 | None:intergenic | 40.0% | |
| TTACGATCTTGGTAAGGCTT+AGG | + | chr8_1:8857849-8857868 | None:intergenic | 40.0% | |
| GTCATCTTCATCATCATCAG+AGG | - | chr8_1:8857089-8857108 | Msa1176660:CDS | 40.0% | |
| CCGTCAGATCAACAATTCTA+TGG | - | chr8_1:8857201-8857220 | Msa1176660:CDS | 40.0% | |
| TGGTGCAGTAGAGTTGTTAT+TGG | + | chr8_1:8857370-8857389 | None:intergenic | 40.0% | |
| ACAACTCTACTGCACCATTA+AGG | - | chr8_1:8857373-8857392 | Msa1176660:CDS | 40.0% | |
| !! | ACGGTGTTGTTTGTTGTTGT+TGG | + | chr8_1:8857401-8857420 | None:intergenic | 40.0% |
| !! | ATGGAGATGAAGTACCGTAA+TGG | + | chr8_1:8857467-8857486 | None:intergenic | 40.0% |
| AGAGAAGATAAACTCGATGG+CGG | - | chr8_1:8857488-8857507 | Msa1176660:CDS | 40.0% | |
| TTCACGTTTCTTCTCTTTGG+TGG | + | chr8_1:8857582-8857601 | None:intergenic | 40.0% | |
| ATACTGCAAAGAATGGTACC+AGG | - | chr8_1:8857669-8857688 | Msa1176660:CDS | 40.0% | |
| GATGGATACTGCATCAATGT+TGG | - | chr8_1:8857701-8857720 | Msa1176660:CDS | 40.0% | |
| ! | AGCAACTGTCCTTTTACTGT+TGG | + | chr8_1:8857796-8857815 | None:intergenic | 40.0% |
| AACAGTAAAAGGACAGTTGC+TGG | - | chr8_1:8857795-8857814 | Msa1176660:CDS | 40.0% | |
| AAGGCTTAGGCAATGAAACA+GGG | + | chr8_1:8857836-8857855 | None:intergenic | 40.0% | |
| TAAGGCTTAGGCAATGAAAC+AGG | + | chr8_1:8857837-8857856 | None:intergenic | 40.0% | |
| TTACGATCTTGGTAAGGCTT+AGG | + | chr8_1:8857849-8857868 | None:intergenic | 40.0% | |
| GTACCGTAATGGTTCGCATT+CGG | + | chr8_1:8857456-8857475 | None:intergenic | 45.0% | |
| GTATCCATCTTAGTTCCACC+TGG | + | chr8_1:8857690-8857709 | None:intergenic | 45.0% | |
| CTTCAGGAGCCAACAGTAAA+AGG | - | chr8_1:8857784-8857803 | Msa1176660:CDS | 45.0% | |
| !! | AAAAGGACAGTTGCTGGTTC+AGG | - | chr8_1:8857801-8857820 | Msa1176660:CDS | 45.0% |
| !! | ACAGTTGCTGGTTCAGGATT+AGG | - | chr8_1:8857807-8857826 | Msa1176660:CDS | 45.0% |
| !! | CAGTTGCTGGTTCAGGATTA+GGG | - | chr8_1:8857808-8857827 | Msa1176660:CDS | 45.0% |
| GTACCGTAATGGTTCGCATT+CGG | + | chr8_1:8857456-8857475 | None:intergenic | 45.0% | |
| GTATCCATCTTAGTTCCACC+TGG | + | chr8_1:8857690-8857709 | None:intergenic | 45.0% | |
| CTTCAGGAGCCAACAGTAAA+AGG | - | chr8_1:8857784-8857803 | Msa1176660:CDS | 45.0% | |
| !! | AAAAGGACAGTTGCTGGTTC+AGG | - | chr8_1:8857801-8857820 | Msa1176660:CDS | 45.0% |
| !! | ACAGTTGCTGGTTCAGGATT+AGG | - | chr8_1:8857807-8857826 | Msa1176660:CDS | 45.0% |
| !! | CAGTTGCTGGTTCAGGATTA+GGG | - | chr8_1:8857808-8857827 | Msa1176660:CDS | 45.0% |
| CCTCCGAATGCGAACCATTA+CGG | - | chr8_1:8857450-8857469 | Msa1176660:CDS | 50.0% | |
| TGTCTAGCTGCAACACTCTG+AGG | + | chr8_1:8857618-8857637 | None:intergenic | 50.0% | |
| CTGCAAAGAATGGTACCAGG+TGG | - | chr8_1:8857672-8857691 | Msa1176660:CDS | 50.0% | |
| GGTACCAGGTGGAACTAAGA+TGG | - | chr8_1:8857683-8857702 | Msa1176660:CDS | 50.0% | |
| GACACAGCTTAAGTCACTGC+AGG | - | chr8_1:8857755-8857774 | Msa1176660:CDS | 50.0% | |
| CCTCCGAATGCGAACCATTA+CGG | - | chr8_1:8857450-8857469 | Msa1176660:CDS | 50.0% | |
| TGTCTAGCTGCAACACTCTG+AGG | + | chr8_1:8857618-8857637 | None:intergenic | 50.0% | |
| CTGCAAAGAATGGTACCAGG+TGG | - | chr8_1:8857672-8857691 | Msa1176660:CDS | 50.0% | |
| GGTACCAGGTGGAACTAAGA+TGG | - | chr8_1:8857683-8857702 | Msa1176660:CDS | 50.0% | |
| GACACAGCTTAAGTCACTGC+AGG | - | chr8_1:8857755-8857774 | Msa1176660:CDS | 50.0% | |
| CCGTAATGGTTCGCATTCGG+AGG | + | chr8_1:8857453-8857472 | None:intergenic | 55.0% | |
| ! | TAAACTCGATGGCGGCGATG+AGG | - | chr8_1:8857496-8857515 | Msa1176660:CDS | 55.0% |
| ! | AAACTCGATGGCGGCGATGA+GGG | - | chr8_1:8857497-8857516 | Msa1176660:CDS | 55.0% |
| TCACTGCAGGAACGTGCTTC+AGG | - | chr8_1:8857768-8857787 | Msa1176660:CDS | 55.0% | |
| CCGTAATGGTTCGCATTCGG+AGG | + | chr8_1:8857453-8857472 | None:intergenic | 55.0% | |
| ! | TAAACTCGATGGCGGCGATG+AGG | - | chr8_1:8857496-8857515 | Msa1176660:CDS | 55.0% |
| ! | AAACTCGATGGCGGCGATGA+GGG | - | chr8_1:8857497-8857516 | Msa1176660:CDS | 55.0% |
| TCACTGCAGGAACGTGCTTC+AGG | - | chr8_1:8857768-8857787 | Msa1176660:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 8857069 | 8857887 | 8857069 | ID=Msa1176660;Name=Msa1176660 |
| chr8_1 | mRNA | 8857069 | 8857887 | 8857069 | ID=Msa1176660-mRNA-1;Parent=Msa1176660;Name=Msa1176660-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|272 |
| chr8_1 | exon | 8857069 | 8857887 | 8857069 | ID=Msa1176660-mRNA-1:exon:2998;Parent=Msa1176660-mRNA-1 |
| chr8_1 | CDS | 8857069 | 8857887 | 8857069 | ID=Msa1176660-mRNA-1:cds;Parent=Msa1176660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
