AlfalfaGEDB | Msa1176670

M. sativa cultivar zhongmu-4 / Msa1176670

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176670	XP_003603053.1	93.040	273	16	3	1	272	1	271	3.45e-170	481

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176670	sp\|Q9SND4\|HEC2_ARATH	72.222	126	27	3	136	254	77	201	8.79e-45	154

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176670	G7J6E7	93.040	273	16	3	1	272	1	271	1.65e-170	481

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1176670	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176670	MtrunA17_Chr3g0134001	93.040	273	16	3	1	272	1	271	3.17e-174	481
Msa1176670	MtrunA17_Chr8g0375121	56.796	206	58	8	43	244	23	201	3.85e-50	165
Msa1176670	MtrunA17_Chr5g0402161	61.491	161	57	3	91	250	56	212	1.12e-47	159
Msa1176670	MtrunA17_Chr8g0384141	77.778	90	20	0	146	235	87	176	1.53e-46	156
Msa1176670	MtrunA17_Chr2g0330641	62.366	93	34	1	145	236	261	353	8.01e-27	107
Msa1176670	MtrunA17_Chr8g0341421	55.340	103	42	1	145	243	296	398	2.31e-26	106
Msa1176670	MtrunA17_Chr7g0243041	67.797	59	18	1	179	237	32	89	3.87e-22	89.7
Msa1176670	MtrunA17_Chr5g0435021	62.500	56	21	0	180	235	225	280	1.73e-18	83.6
Msa1176670	MtrunA17_Chr1g0152651	62.963	54	20	0	182	235	283	336	8.88e-18	82.0
Msa1176670	MtrunA17_Chr1g0207301	50.746	67	33	0	169	235	284	350	3.88e-17	80.5

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176670	AT3G50330.1	72.222	126	27	3	136	254	77	201	8.93e-46	154
Msa1176670	AT5G67060.2	72.951	122	22	2	127	239	57	176	2.75e-45	152
Msa1176670	AT5G67060.1	72.951	122	22	2	127	239	69	188	4.07e-45	152
Msa1176670	AT4G00120.1	69.318	88	27	0	148	235	87	174	1.21e-36	129
Msa1176670	AT3G21330.1	52.308	130	59	2	145	271	241	370	3.97e-36	132
Msa1176670	AT5G09750.1	76.667	90	21	0	146	235	92	181	6.43e-35	125
Msa1176670	AT5G01305.1	67.797	59	19	0	174	232	38	96	3.02e-21	88.2
Msa1176670	AT5G43175.1	50.725	69	34	0	167	235	126	194	1.31e-18	82.4
Msa1176670	AT4G33880.1	64.815	54	19	0	182	235	275	328	2.62e-18	84.0
Msa1176670	AT5G37800.1	53.333	75	28	1	168	235	189	263	3.49e-18	82.8

Showing 1 to 10 of 19 entries

Previous1 2Next

Find 53 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGATGGCGGCGATGA+GGG	0.510188	8_1:-8860388	Msa1176670:CDS
AACAATAACAGAACAGTTGC+TGG	0.438471	8_1:-8860090	Msa1176670:CDS
AACAGAACAGTTGCTGGTTC+AGG	0.322536	8_1:-8860084	Msa1176670:CDS
AATAAGAATACTGCAAAGAA+TGG	0.517132	8_1:-8860223	Msa1176670:CDS
AATGATCAACATTACAATCT+TGG	0.419777	8_1:+8860028	None:intergenic
AATGATGAAGATGAAGACCA+TGG	0.757666	8_1:+8860591	None:intergenic
ACAGTTGCTGGTTCAGGATT+AGG	0.245927	8_1:-8860078	Msa1176670:CDS
ACCATGGTATTGGATTAGGA+GGG	0.660517	8_1:+8860607	None:intergenic
ACCCTCCTAATCCAATACCA+TGG	0.687624	8_1:-8860608	Msa1176670:CDS
ACGGTGTTGTTTGTTGTTGT+TGG	0.421243	8_1:+8860487	None:intergenic

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAGTTAGATGAAGAAAATTC+AGG	+	chr8_1:8860101-8860120	None:intergenic	30.0%
TCAACATTACAATCTTGGTA+TGG	+	chr8_1:8860803-8860822	None:intergenic	30.0%
CAGTTAGATGAAGAAAATTC+AGG	+	chr8_1:8860101-8860120	None:intergenic	30.0%
TCAACATTACAATCTTGGTA+TGG	+	chr8_1:8860803-8860822	None:intergenic	30.0%
GTCATCTTCATTATCATCAG+AGG	-	chr8_1:8860037-8860056	Msa1176670:CDS	35.0%
AATGATGAAGATGAAGACCA+TGG	+	chr8_1:8860245-8860264	None:intergenic	35.0%
AGAGATTGTGTTTGTGTTTG+TGG	+	chr8_1:8860291-8860310	None:intergenic	35.0%
TGGTGTAGTAGAGTTGTTAT+TGG	+	chr8_1:8860318-8860337	None:intergenic	35.0%
GATTCTGGGTCTATGTAAAT+TGG	+	chr8_1:8860500-8860519	None:intergenic	35.0%
AGCAACTGTTCTGTTATTGT+TGG	+	chr8_1:8860744-8860763	None:intergenic	35.0%

Showing 1 to 10 of 112 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	8860017	8860838	8860017	ID=Msa1176670;Name=Msa1176670
chr8_1	mRNA	8860017	8860838	8860017	ID=Msa1176670-mRNA-1;Parent=Msa1176670;Name=Msa1176670-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|273
chr8_1	exon	8860017	8860838	8860017	ID=Msa1176670-mRNA-1:exon:2999;Parent=Msa1176670-mRNA-1
chr8_1	CDS	8860017	8860838	8860017	ID=Msa1176670-mRNA-1:cds;Parent=Msa1176670-mRNA-1

Gene Sequence

>Msa1176670

ATGGATTGTAACCAGTTAAAGTCATCTTCATTATCATCAGAGGATCAAATTGACATGATGTTAATGATGATGATGCAACTCCCTGAATTTTCTTCATCTAACTGTAATAATACCAACACCATCAATCAATTTCCACCGTCAAATCAACAATTCTATGCCACTTCAAATGTTTCTAACAATACATGTCCTCTTGCAGATTTAATAGATAACCCTCCTAATCCAATACCATGGTCTTCATCTTCATCATTCACTCATTTACCTTCACAATCCACCACAAACACAAACACAATCTCTTTAACCAATAACAACTCTACTACACCATTAATGTTCCAACAACAACAAACAACACCGTTAATGTTTTCTAATTCGAGCAACGAGATTGCTCCGAATACAAACCATTACGGTACTGCGTTGCCATCTGAGAAGAGAAACTCGATGGCGGCGATGAGGGAGATGATATTCAAAATAGCAGCTATGCAACCAATTTACATAGACCCAGAATCAGTAAAACCACCAAAGAGAAGAAACGTCAAAATTTCAAAAGATCCTCAGAGTATAGCAGCTAGACACAGAAGAGAAAGAATAAGCGAGAAAATAAGAATACTGCAAAGAATGGTACCAGGTGGAACTAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTTAAGTTTCTCAAGACACAGCTTAAGTCACTGCATGAACGTGCTTCAGGAGCCAACAATAACAGAACAGTTGCTGGTTCAGGATTAGGGTTCCCTGTTTCATTGCCTAAGCCATACCAAGATTGTAATGTTGATCATTATGGGAGATAA

Protein sequence

>Msa1176670

MDCNQLKSSSLSSEDQIDMMLMMMMQLPEFSSSNCNNTNTINQFPPSNQQFYATSNVSNNTCPLADLIDNPPNPIPWSSSSSFTHLPSQSTTNTNTISLTNNNSTTPLMFQQQQTTPLMFSNSSNEIAPNTNHYGTALPSEKRNSMAAMREMIFKIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLHERASGANNNRTVAGSGLGFPVSLPKPYQDCNVDHYGR*