Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177030 | XP_013444711.1 | 95.498 | 422 | 19 | 0 | 1 | 422 | 1 | 422 | 0.0 | 830 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177030 | sp|Q99089|CPRF1_PETCR | 52.900 | 431 | 172 | 11 | 1 | 421 | 1 | 410 | 8.58e-134 | 393 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa1177030 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177030 | MtrunA17_Chr8g0347741 | 95.498 | 422 | 19 | 0 | 1 | 422 | 1 | 422 | 0.0 | 830 |
Msa1177030 | MtrunA17_Chr7g0275321 | 71.329 | 429 | 110 | 7 | 1 | 421 | 1 | 424 | 0.0 | 595 |
Msa1177030 | MtrunA17_Chr5g0410531 | 35.751 | 386 | 198 | 15 | 1 | 347 | 1 | 375 | 7.59e-47 | 166 |
Msa1177030 | MtrunA17_Chr8g0373571 | 35.150 | 367 | 180 | 13 | 1 | 348 | 1 | 328 | 2.22e-40 | 147 |
Msa1177030 | MtrunA17_Chr8g0369161 | 32.759 | 406 | 200 | 16 | 1 | 354 | 1 | 385 | 4.83e-40 | 147 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177030 | AT2G46270.1 | 52.804 | 428 | 148 | 16 | 1 | 421 | 1 | 381 | 5.32e-120 | 354 |
Msa1177030 | AT2G46270.3 | 52.804 | 428 | 148 | 16 | 1 | 421 | 1 | 381 | 5.32e-120 | 354 |
Msa1177030 | AT2G46270.2 | 50.701 | 428 | 134 | 15 | 1 | 421 | 1 | 358 | 3.19e-109 | 326 |
Msa1177030 | AT2G46270.4 | 50.701 | 428 | 134 | 15 | 1 | 421 | 1 | 358 | 3.19e-109 | 326 |
Msa1177030 | AT4G01120.1 | 44.028 | 427 | 167 | 15 | 1 | 422 | 1 | 360 | 3.32e-85 | 265 |
Msa1177030 | AT2G35530.1 | 35.530 | 349 | 170 | 13 | 36 | 347 | 42 | 372 | 2.02e-39 | 146 |
Msa1177030 | AT4G36730.2 | 34.000 | 350 | 167 | 13 | 1 | 348 | 1 | 288 | 1.11e-35 | 134 |
Msa1177030 | AT4G36730.1 | 34.000 | 350 | 169 | 13 | 1 | 348 | 1 | 290 | 1.46e-34 | 130 |
Msa1177030 | AT1G32150.1 | 35.325 | 385 | 188 | 17 | 1 | 347 | 1 | 362 | 1.91e-34 | 132 |
Msa1177030 | AT5G15830.1 | 40.000 | 105 | 57 | 3 | 251 | 355 | 47 | 145 | 6.81e-11 | 61.6 |
Find 133 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACTGTTAGCAGTAATTT+TGG | 0.154999 | 8_1:-9367941 | None:intergenic |
GTTGTTGTTGTGTATCTTTC+AGG | 0.162059 | 8_1:+9362858 | Msa1177030:five_prime_UTR |
CGCAGCTTTGCACCAGAATT+TGG | 0.174496 | 8_1:-9367813 | None:intergenic |
TTATATCTTCAGGCATATTA+TGG | 0.179056 | 8_1:+9364869 | Msa1177030:intron |
TGCATTGACTGCTGAGAATT+TGG | 0.206598 | 8_1:+9367301 | Msa1177030:CDS |
TTTGTACATTGAAGAGAATT+AGG | 0.276493 | 8_1:+9368095 | Msa1177030:three_prime_UTR |
GTTGGTGTCTCTATGCTTGT+AGG | 0.280489 | 8_1:-9365603 | None:intergenic |
GATTGAAAATGCTACATTAA+AGG | 0.302646 | 8_1:+9367373 | Msa1177030:CDS |
AGTACCTGCATCCAGGTTTC+AGG | 0.304101 | 8_1:-9366598 | None:intergenic |
GTTTGTTGATTATGTAGTTT+TGG | 0.309343 | 8_1:+9367903 | Msa1177030:three_prime_UTR |
ACCCCTCCATGTGAATAAAA+TGG | 0.310681 | 8_1:-9365141 | None:intergenic |
CTTCCTTAAATGAACGAAAA+TGG | 0.313058 | 8_1:-9362747 | None:intergenic |
TTTGGAAGCAGCAGTCTCTT+TGG | 0.315745 | 8_1:-9366434 | None:intergenic |
GTGCAGTTGAATAATTTCTA+AGG | 0.328604 | 8_1:+9363937 | Msa1177030:intron |
TGAAAAGTAATAATTAGTTT+TGG | 0.331761 | 8_1:-9368009 | None:intergenic |
ATTCGACGGGTTGGCTTGAT+TGG | 0.332587 | 8_1:-9364142 | None:intergenic |
TGTGAGAACAAACCAAATTC+TGG | 0.333683 | 8_1:+9367801 | Msa1177030:CDS |
AACCCACTTCGAAGAAAATA+AGG | 0.344516 | 8_1:-9362814 | None:intergenic |
ATCAGTGTTTCCAGATGATT+TGG | 0.348179 | 8_1:-9365625 | None:intergenic |
ACTATGCTTACAGTTGTTAC+AGG | 0.353749 | 8_1:-9364042 | None:intergenic |
TGTGGAGCACTGGTGGAAAT+AGG | 0.361837 | 8_1:-9366556 | None:intergenic |
AAAGCTGGAAAACACTCAAC+TGG | 0.369633 | 8_1:+9367650 | Msa1177030:CDS |
TCCTGATTGGGCTGCCATGC+AGG | 0.378974 | 8_1:+9364176 | Msa1177030:CDS |
GATGGGCTTGCAATGTCAAT+AGG | 0.380086 | 8_1:+9365678 | Msa1177030:CDS |
TATATCTTCAGGCATATTAT+GGG | 0.390466 | 8_1:+9364870 | Msa1177030:intron |
TGTGGTGGTCCCCACATGTA+TGG | 0.390846 | 8_1:-9364953 | None:intergenic |
TGCAGCTCTATCATCAGAAT+TGG | 0.394477 | 8_1:-9367760 | None:intergenic |
GGAAGTATTTGACTCAATCT+TGG | 0.394614 | 8_1:+9363958 | Msa1177030:five_prime_UTR |
ACAGGCCGAGGCTGAAGAAT+TGG | 0.394679 | 8_1:+9367265 | Msa1177030:intron |
AGAGCTGCAGAGGAAGAAAA+TGG | 0.398971 | 8_1:+9367774 | Msa1177030:CDS |
GCAGCAGCTGAGTTGAAATA+TGG | 0.399898 | 8_1:-9364911 | None:intergenic |
CAGCCTATGATGCATCCATA+TGG | 0.403301 | 8_1:+9365102 | Msa1177030:intron |
TGAGAATTTGGCGCTGAAAT+CGG | 0.404953 | 8_1:+9367313 | Msa1177030:CDS |
ACTTTAGAAAGGGTTGTGAT+TGG | 0.406895 | 8_1:+9368133 | Msa1177030:three_prime_UTR |
CTGAGCGTGGGGCGGAAAAC+CGG | 0.409125 | 8_1:+9365721 | Msa1177030:CDS |
ATTGGAATCGATATATGATT+TGG | 0.411970 | 8_1:+9368151 | Msa1177030:three_prime_UTR |
ACCTGCATGGCAGCCCAATC+AGG | 0.417831 | 8_1:-9364177 | None:intergenic |
GGTGCATATGGCGGCCCATA+TGG | 0.422943 | 8_1:-9365117 | None:intergenic |
CAACAAACCAGTGCAAATAC+TGG | 0.433037 | 8_1:-9367888 | None:intergenic |
ATCATCTGGAAACACTGATC+AGG | 0.436322 | 8_1:+9365629 | Msa1177030:CDS |
GTTGCCATCGCTTCCATCGC+TGG | 0.439957 | 8_1:-9365897 | None:intergenic |
AGAAGGCCTTTCAATCTTAA+CGG | 0.439968 | 8_1:-9364016 | None:intergenic |
AAGATCCAGGCTTAGGAAGC+AGG | 0.442737 | 8_1:+9366816 | Msa1177030:CDS |
GAGACACCAACCAAATCATC+TGG | 0.448010 | 8_1:+9365615 | Msa1177030:CDS |
ATGTTCACGTCTATCCTGAT+TGG | 0.449162 | 8_1:+9364163 | Msa1177030:CDS |
TTCAACTCAGCTGCTGCTCC+TGG | 0.457412 | 8_1:+9364917 | Msa1177030:CDS |
AAACTTACAGCTGGTGAAGA+TGG | 0.461400 | 8_1:-9365478 | None:intergenic |
TGTTCACGTCTATCCTGATT+GGG | 0.463031 | 8_1:+9364164 | Msa1177030:CDS |
GCCTCCTGAAACCTGGATGC+AGG | 0.464627 | 8_1:+9366594 | Msa1177030:CDS |
GGCCCATATGGATGCATCAT+AGG | 0.470629 | 8_1:-9365105 | None:intergenic |
TTCAGCTATGACCACATCAC+TGG | 0.470650 | 8_1:+9366516 | Msa1177030:CDS |
GAAATCGGAAATGAATGAAT+TGG | 0.472002 | 8_1:+9367328 | Msa1177030:CDS |
CAATCTTGGTGCTTATCTCA+TGG | 0.479255 | 8_1:+9363972 | Msa1177030:exon |
GGCAAAACTCCACAAGGTTG+TGG | 0.479999 | 8_1:-9366574 | None:intergenic |
GGAAGCGATGGCAACACTAC+AGG | 0.486034 | 8_1:+9365905 | Msa1177030:CDS |
TCATACCTGCTTCCTAAGCC+TGG | 0.486648 | 8_1:-9366821 | None:intergenic |
CTGCTAGAAGATCCAGGCTT+AGG | 0.486710 | 8_1:+9366809 | Msa1177030:CDS |
GGGCGGAAAACCGGCTATCA+CGG | 0.489814 | 8_1:+9365730 | Msa1177030:CDS |
GAATAAAATGGTGGTGCATA+TGG | 0.490133 | 8_1:-9365129 | None:intergenic |
TGGTTGTTGGTGTCCCATCC+CGG | 0.497265 | 8_1:-9366067 | None:intergenic |
TTTATCATACCAGTGGTTGT+TGG | 0.502643 | 8_1:-9366080 | None:intergenic |
TCCACAAGGTTGTGGAGCAC+TGG | 0.503689 | 8_1:-9366566 | None:intergenic |
ATATAGGGGTCAAATTCAAA+TGG | 0.506947 | 8_1:+9365445 | Msa1177030:intron |
ATCTTACAGTACCTGCATCC+AGG | 0.507964 | 8_1:-9366605 | None:intergenic |
ACCTTATAGTATCTGAGAAA+AGG | 0.515621 | 8_1:+9368204 | Msa1177030:three_prime_UTR |
GACGTGAACATTCGACGGGT+TGG | 0.516747 | 8_1:-9364151 | None:intergenic |
TGGAACAAGGAAAAGAAGCC+GGG | 0.517217 | 8_1:+9366049 | Msa1177030:CDS |
TCGTGCCAATTCTTCAGCCT+CGG | 0.521120 | 8_1:-9367270 | None:intergenic |
ATTACTTGAATAGATGGAGA+AGG | 0.522234 | 8_1:+9366382 | Msa1177030:intron |
ACAGTTGTTACAGGTGAAGA+AGG | 0.523511 | 8_1:-9364033 | None:intergenic |
AGCCTATGATGCATCCATAT+GGG | 0.523891 | 8_1:+9365103 | Msa1177030:intron |
ATACATGTGGGGACCACCAC+AGG | 0.528881 | 8_1:+9364955 | Msa1177030:CDS |
TTTGAACAGCATTGACGAGA+GGG | 0.529641 | 8_1:+9367692 | Msa1177030:CDS |
TTACTTGAATAGATGGAGAA+GGG | 0.530286 | 8_1:+9366383 | Msa1177030:intron |
CTCATGGGAAACAGCGAGGA+TGG | 0.530777 | 8_1:+9363988 | Msa1177030:exon |
AATCTTGGTGCTTATCTCAT+GGG | 0.533227 | 8_1:+9363973 | Msa1177030:exon |
ATGGAACAAGGAAAAGAAGC+CGG | 0.533912 | 8_1:+9366048 | Msa1177030:CDS |
GAAAATCCGTTAAGATTGAA+AGG | 0.538090 | 8_1:+9364010 | Msa1177030:CDS |
ATGCTGACAGTGCTGAGCGT+GGG | 0.539422 | 8_1:+9365709 | Msa1177030:CDS |
TTGAAAACCAGTATTTGCAC+TGG | 0.541531 | 8_1:+9367881 | Msa1177030:exon |
GCTGCCACAGCATTAGCTCT+AGG | 0.543381 | 8_1:-9367855 | None:intergenic |
TGCTCCTCACCCATACATGT+GGG | 0.547429 | 8_1:+9364943 | Msa1177030:CDS |
GATACTGAGGGTTCCAGCGA+TGG | 0.548274 | 8_1:+9365884 | Msa1177030:CDS |
CAAGGAAAAGAAGCCGGGAT+GGG | 0.549908 | 8_1:+9366054 | Msa1177030:CDS |
GTGAATCTGCTAGAAGATCC+AGG | 0.554001 | 8_1:+9366803 | Msa1177030:CDS |
ACAAGGTTGTGGAGCACTGG+TGG | 0.565799 | 8_1:-9366563 | None:intergenic |
ACCAGTGCTCCACAACCTTG+TGG | 0.566848 | 8_1:+9366565 | Msa1177030:CDS |
TCATCTGGAAACACTGATCA+GGG | 0.569446 | 8_1:+9365630 | Msa1177030:CDS |
GAAGCGATGGCAACACTACA+GGG | 0.570248 | 8_1:+9365906 | Msa1177030:CDS |
GAACAAACCTCCGTGATAGC+CGG | 0.572299 | 8_1:-9365740 | None:intergenic |
TGCTGACAGTGCTGAGCGTG+GGG | 0.575682 | 8_1:+9365710 | Msa1177030:CDS |
ACAAGGAAAAGAAGCCGGGA+TGG | 0.577909 | 8_1:+9366053 | Msa1177030:CDS |
TATGGGTGAGGAGCATGACC+AGG | 0.581544 | 8_1:-9364935 | None:intergenic |
GGTTCCAGCGATGGAAGCGA+TGG | 0.582155 | 8_1:+9365893 | Msa1177030:CDS |
TTTCTGTTTAGATTTGATTG+GGG | 0.584346 | 8_1:+9368056 | Msa1177030:three_prime_UTR |
TTCTGATGATAGAGCTGCAG+AGG | 0.584828 | 8_1:+9367764 | Msa1177030:CDS |
GATGGGACACCAACAACCAC+TGG | 0.585041 | 8_1:+9366071 | Msa1177030:CDS |
GGTCCCCACATGTATGGGTG+AGG | 0.585719 | 8_1:-9364947 | None:intergenic |
AAACTTACGATGGCAACGGC+AGG | 0.589342 | 8_1:-9365174 | None:intergenic |
TGACCACATCACTGGAACTG+AGG | 0.590038 | 8_1:+9366524 | Msa1177030:CDS |
AATGCTGACAGTGCTGAGCG+TGG | 0.592809 | 8_1:+9365708 | Msa1177030:CDS |
ATGCTCCTCACCCATACATG+TGG | 0.594125 | 8_1:+9364942 | Msa1177030:CDS |
CAAAAGGTTGGTAACCTGCA+TGG | 0.594851 | 8_1:-9364190 | None:intergenic |
GTGTTTCCAGATGATTTGGT+TGG | 0.595146 | 8_1:-9365621 | None:intergenic |
GGGTCAAATTCAAATGGTCA+AGG | 0.595761 | 8_1:+9365451 | Msa1177030:CDS |
GTTCCTCAGTTCCAGTGATG+TGG | 0.596954 | 8_1:-9366527 | None:intergenic |
GCACTGGTGGAAATAGGCGA+AGG | 0.600927 | 8_1:-9366550 | None:intergenic |
CTTGCAATGTCAATAGGCAA+TGG | 0.603823 | 8_1:+9365684 | Msa1177030:CDS |
GTGGTGGTCCCCACATGTAT+GGG | 0.604143 | 8_1:-9364952 | None:intergenic |
GTCATAGCTGAAGAAAGTAC+AGG | 0.613916 | 8_1:-9366505 | None:intergenic |
GCAGCTGAGTTGAAATATGG+TGG | 0.615300 | 8_1:-9364908 | None:intergenic |
CAATGTTATGCACAGACCAA+TGG | 0.615759 | 8_1:+9366029 | Msa1177030:intron |
TATCAACAGTGTGGATACTG+AGG | 0.618321 | 8_1:+9365871 | Msa1177030:intron |
GATAGACGTGAACATTCGAC+GGG | 0.622023 | 8_1:-9364155 | None:intergenic |
ACCTGCATCCAGGTTTCAGG+AGG | 0.622736 | 8_1:-9366595 | None:intergenic |
AAGCTGGAAAACACTCAACT+GGG | 0.626485 | 8_1:+9367651 | Msa1177030:CDS |
GGATAGACGTGAACATTCGA+CGG | 0.628969 | 8_1:-9364156 | None:intergenic |
GTGAGCTGAAACGTGAGAGG+AGG | 0.634017 | 8_1:+9366767 | Msa1177030:CDS |
AGCGTGAGCTGAAACGTGAG+AGG | 0.634386 | 8_1:+9366764 | Msa1177030:CDS |
ATGCACAGACCAATGGAACA+AGG | 0.635504 | 8_1:+9366036 | Msa1177030:intron |
CTATGGAGCACTACCTGTGG+TGG | 0.638683 | 8_1:-9364968 | None:intergenic |
ATCAACAGTGTGGATACTGA+GGG | 0.652441 | 8_1:+9365872 | Msa1177030:intron |
ATGTAAACTTACGATGGCAA+CGG | 0.653032 | 8_1:-9365178 | None:intergenic |
CACTGGTGGAAATAGGCGAA+GGG | 0.655757 | 8_1:-9366549 | None:intergenic |
TCAGGAGGCAAAACTCCACA+AGG | 0.663588 | 8_1:-9366580 | None:intergenic |
TGACAGTGCTGAGCGTGGGG+CGG | 0.664059 | 8_1:+9365713 | Msa1177030:CDS |
GCTCCTCACCCATACATGTG+GGG | 0.694056 | 8_1:+9364944 | Msa1177030:CDS |
CGGAAAACCGGCTATCACGG+AGG | 0.698828 | 8_1:+9365733 | Msa1177030:CDS |
AAATCCTAGAGCTAATGCTG+TGG | 0.699726 | 8_1:+9367851 | Msa1177030:CDS |
TAAAATGGTGGTGCATATGG+CGG | 0.709796 | 8_1:-9365126 | None:intergenic |
TTATCTCATGGGAAACAGCG+AGG | 0.711063 | 8_1:+9363984 | Msa1177030:exon |
CCTCCATGTGAATAAAATGG+TGG | 0.718697 | 8_1:-9365138 | None:intergenic |
AAGCGATGGCAACACTACAG+GGG | 0.742066 | 8_1:+9365907 | Msa1177030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATTTGATTTTTGTTTT+AGG | + | chr8_1:9362952-9362971 | Msa1177030:intron | 10.0% |
!! | AAATAGATGAATATTAATAA+AGG | + | chr8_1:9363263-9363282 | Msa1177030:intron | 10.0% |
!! | AATAGATGAATATTAATAAA+GGG | + | chr8_1:9363264-9363283 | Msa1177030:intron | 10.0% |
!!! | ATTATAAAATGTTTTAACAT+GGG | - | chr8_1:9364073-9364092 | None:intergenic | 10.0% |
!! | AATTATATTGGTAAAATATA+GGG | + | chr8_1:9365430-9365449 | Msa1177030:intron | 10.0% |
!! | ACATAAAATTATTTATATCT+TGG | + | chr8_1:9367404-9367423 | Msa1177030:intron | 10.0% |
!! | AAAAAAATATCAAACTAAAC+CGG | - | chr8_1:9363080-9363099 | None:intergenic | 15.0% |
!!! | AATATTAATAAAGGGTATTT+TGG | + | chr8_1:9363272-9363291 | Msa1177030:intron | 15.0% |
!!! | CATTATAAAATGTTTTAACA+TGG | - | chr8_1:9364074-9364093 | None:intergenic | 15.0% |
!! | ATAATATTTCCATAAAAAGT+AGG | + | chr8_1:9364319-9364338 | Msa1177030:intron | 15.0% |
!!! | ATGTAAATTTATTTTTACAC+TGG | + | chr8_1:9364363-9364382 | Msa1177030:intron | 15.0% |
!! | AAAAAAACTTAATGATCTAA+CGG | - | chr8_1:9364402-9364421 | None:intergenic | 15.0% |
!!! | TACACTTTAATTTATGAATA+TGG | + | chr8_1:9365287-9365306 | Msa1177030:intron | 15.0% |
!! | TATGTACTTATGAATTATAT+TGG | + | chr8_1:9365418-9365437 | Msa1177030:intron | 15.0% |
!! | GAATTATATTGGTAAAATAT+AGG | + | chr8_1:9365429-9365448 | Msa1177030:intron | 15.0% |
!! | ATTATATTGGTAAAATATAG+GGG | + | chr8_1:9365431-9365450 | Msa1177030:intron | 15.0% |
!!! | TTAATTGCATTCAATTTTTT+TGG | + | chr8_1:9366304-9366323 | Msa1177030:intron | 15.0% |
!! | CTATTTAGTCAAATTATTAA+CGG | - | chr8_1:9367489-9367508 | None:intergenic | 15.0% |
!!! | TGAAAAGTAATAATTAGTTT+TGG | - | chr8_1:9368012-9368031 | None:intergenic | 15.0% |
!!! | TTTTTTTGCAAAAAAGTTGA+AGG | + | chr8_1:9363331-9363350 | Msa1177030:intron | 20.0% |
!!! | TTTTTTGCAAAAAAGTTGAA+GGG | + | chr8_1:9363332-9363351 | Msa1177030:intron | 20.0% |
!! | TTGTCATGTTAATTATGATA+AGG | + | chr8_1:9363360-9363379 | Msa1177030:intron | 20.0% |
!!! | AGTTATTGATTGACTAATTA+AGG | + | chr8_1:9363465-9363484 | Msa1177030:intron | 20.0% |
!! | AAACCAACTCTTTAAATTAA+AGG | + | chr8_1:9363666-9363685 | Msa1177030:intron | 20.0% |
!! | CTATCTTATCAAATGATTAT+CGG | + | chr8_1:9363758-9363777 | Msa1177030:intron | 20.0% |
!! | ATTACTTTCTTGTTAATAAC+AGG | + | chr8_1:9364113-9364132 | Msa1177030:intron | 20.0% |
!!! | TCTATTAATCCTACTTTTTA+TGG | - | chr8_1:9364331-9364350 | None:intergenic | 20.0% |
!! | ATTGATATTATAAACCAATG+TGG | + | chr8_1:9364574-9364593 | Msa1177030:intron | 20.0% |
!!! | AAGTTTTCATGAAAATATGT+AGG | - | chr8_1:9364652-9364671 | None:intergenic | 20.0% |
!!! | TTATGAATATGGATTATCAA+AGG | + | chr8_1:9365298-9365317 | Msa1177030:intron | 20.0% |
!! | AAAAAATTAAAACTTACAGC+TGG | - | chr8_1:9365490-9365509 | None:intergenic | 20.0% |
!! | CTGAATATTGTAAATTATGA+TGG | + | chr8_1:9365546-9365565 | Msa1177030:intron | 20.0% |
!! | GGTTTAATGAAAAAATTGAA+AGG | + | chr8_1:9365651-9365670 | Msa1177030:CDS | 20.0% |
!! | AAAAAATTGAAAGGATTTGA+TGG | + | chr8_1:9365660-9365679 | Msa1177030:CDS | 20.0% |
!! | AAAAATTGAAAGGATTTGAT+GGG | + | chr8_1:9365661-9365680 | Msa1177030:CDS | 20.0% |
!!! | TGGCTATTATAATTTTTTCT+CGG | + | chr8_1:9365941-9365960 | Msa1177030:intron | 20.0% |
!! | GTATTAATTACTTGAATAGA+TGG | + | chr8_1:9366376-9366395 | Msa1177030:intron | 20.0% |
!!! | TAAGATTTTAGTTCTACTAA+TGG | + | chr8_1:9366622-9366641 | Msa1177030:intron | 20.0% |
!!! | TTATTACTTTTCAGTTTCTT+AGG | + | chr8_1:9368019-9368038 | Msa1177030:three_prime_UTR | 20.0% |
!!! | TTTTCTGTTTAGATTTGATT+GGG | + | chr8_1:9368055-9368074 | Msa1177030:three_prime_UTR | 20.0% |
!!! | TTAGTTTTTAGACTTTAGAA+AGG | + | chr8_1:9368122-9368141 | Msa1177030:three_prime_UTR | 20.0% |
!!! | TAGTTTTTAGACTTTAGAAA+GGG | + | chr8_1:9368123-9368142 | Msa1177030:three_prime_UTR | 20.0% |
!!! | TTTGGTTTTGTATTAACTAT+TGG | + | chr8_1:9368169-9368188 | Msa1177030:three_prime_UTR | 20.0% |
!! | TTACCATTTTCGTTCATTTA+AGG | + | chr8_1:9362744-9362763 | Msa1177030:five_prime_UTR | 25.0% |
!! | ATTTTCGTTCATTTAAGGAA+GGG | + | chr8_1:9362749-9362768 | Msa1177030:five_prime_UTR | 25.0% |
! | ATAAAAAAAACAGCAATCCT+CGG | - | chr8_1:9362791-9362810 | None:intergenic | 25.0% |
!!! | CTAAACCGGATAAATTTTTT+CGG | - | chr8_1:9363066-9363085 | None:intergenic | 25.0% |
! | TTGAAACACTGAAAATTGAA+GGG | + | chr8_1:9363104-9363123 | Msa1177030:intron | 25.0% |
! | GTGTTAAAATCTTTGAACTT+AGG | + | chr8_1:9363165-9363184 | Msa1177030:intron | 25.0% |
!!! | TAATAAAGGGTATTTTGGAT+CGG | + | chr8_1:9363277-9363296 | Msa1177030:intron | 25.0% |
!! | AACATTAGATTTTCTTGCTA+AGG | - | chr8_1:9363521-9363540 | None:intergenic | 25.0% |
!! | ACACCTTTAATTTAAAGAGT+TGG | - | chr8_1:9363672-9363691 | None:intergenic | 25.0% |
! | ATCATTTGATAAGATAGAAG+TGG | - | chr8_1:9363755-9363774 | None:intergenic | 25.0% |
! | ACAATAAAAAAGCAACAGAA+AGG | - | chr8_1:9363857-9363876 | None:intergenic | 25.0% |
! | ATAAAGGAAATGAAAGCAAA+AGG | - | chr8_1:9364209-9364228 | None:intergenic | 25.0% |
! | GTAGGATTAATAGATATACA+CGG | + | chr8_1:9364337-9364356 | Msa1177030:intron | 25.0% |
! | TGTAAAAAGTCTTACATTGT+CGG | + | chr8_1:9364480-9364499 | Msa1177030:intron | 25.0% |
! | AGATCATAAAAGTCTTCAAA+AGG | - | chr8_1:9364550-9364569 | None:intergenic | 25.0% |
!! | CACCAAAAGTAGTTTTTAAT+GGG | - | chr8_1:9364835-9364854 | None:intergenic | 25.0% |
!! | TCACCAAAAGTAGTTTTTAA+TGG | - | chr8_1:9364836-9364855 | None:intergenic | 25.0% |
! | AAAGTTTCTGTTATATCTTC+AGG | + | chr8_1:9364859-9364878 | Msa1177030:intron | 25.0% |
! | TTATATCTTCAGGCATATTA+TGG | + | chr8_1:9364869-9364888 | Msa1177030:intron | 25.0% |
! | TATATCTTCAGGCATATTAT+GGG | + | chr8_1:9364870-9364889 | Msa1177030:intron | 25.0% |
! | AGTTTACATTCTCACATTAT+TGG | + | chr8_1:9365192-9365211 | Msa1177030:intron | 25.0% |
!! | ATCAAAGGTGATTTTTATAC+TGG | + | chr8_1:9365313-9365332 | Msa1177030:intron | 25.0% |
!! | ATTTTCATTCTTCAACTTTC+CGG | - | chr8_1:9366003-9366022 | None:intergenic | 25.0% |
! | ATTATTGTTTATCATACCAG+TGG | - | chr8_1:9366090-9366109 | None:intergenic | 25.0% |
! | CTAGATTACAAATATACTTC+TGG | + | chr8_1:9366117-9366136 | Msa1177030:intron | 25.0% |
! | TTTATCAAGATCATACTCAA+TGG | - | chr8_1:9366178-9366197 | None:intergenic | 25.0% |
! | CATTATCATGCATTAACAAT+TGG | - | chr8_1:9366211-9366230 | None:intergenic | 25.0% |
! | TAATCAGAAATTTAAGAGCA+TGG | - | chr8_1:9366242-9366261 | None:intergenic | 25.0% |
!!! | TCAATTTTTTTGGTGTCATA+TGG | + | chr8_1:9366314-9366333 | Msa1177030:intron | 25.0% |
! | ATTAATACCTTAGTTACTAG+TGG | - | chr8_1:9366364-9366383 | None:intergenic | 25.0% |
! | CGTGACAATTAAAAAAAACA+CGG | - | chr8_1:9366881-9366900 | None:intergenic | 25.0% |
!!! | TTAATTGTCACGTGTTTTTA+TGG | + | chr8_1:9366889-9366908 | Msa1177030:intron | 25.0% |
!!! | TAATTGTCACGTGTTTTTAT+GGG | + | chr8_1:9366890-9366909 | Msa1177030:intron | 25.0% |
!!! | TTTTATGGGTTTTTTTGGAT+TGG | + | chr8_1:9366904-9366923 | Msa1177030:intron | 25.0% |
! | AAAGAAAATGTTCTCACAAA+AGG | + | chr8_1:9367209-9367228 | Msa1177030:intron | 25.0% |
! | GATTGAAAATGCTACATTAA+AGG | + | chr8_1:9367373-9367392 | Msa1177030:CDS | 25.0% |
! | TTTATATCTTGGCATTTCAT+AGG | + | chr8_1:9367415-9367434 | Msa1177030:intron | 25.0% |
!!! | GTATAGATAATTTTGACTTC+AGG | + | chr8_1:9367626-9367645 | Msa1177030:intron | 25.0% |
!!! | GTTTGTTGATTATGTAGTTT+TGG | + | chr8_1:9367903-9367922 | Msa1177030:three_prime_UTR | 25.0% |
!! | AAAACTGTTAGCAGTAATTT+TGG | - | chr8_1:9367944-9367963 | None:intergenic | 25.0% |
!! | GTTTTCTGTTTAGATTTGAT+TGG | + | chr8_1:9368054-9368073 | Msa1177030:three_prime_UTR | 25.0% |
! | TTTCTGTTTAGATTTGATTG+GGG | + | chr8_1:9368056-9368075 | Msa1177030:three_prime_UTR | 25.0% |
! | TTTGTACATTGAAGAGAATT+AGG | + | chr8_1:9368095-9368114 | Msa1177030:three_prime_UTR | 25.0% |
! | ATTGGAATCGATATATGATT+TGG | + | chr8_1:9368151-9368170 | Msa1177030:three_prime_UTR | 25.0% |
CTTCCTTAAATGAACGAAAA+TGG | - | chr8_1:9362750-9362769 | None:intergenic | 30.0% | |
! | CATTTTCGTTCATTTAAGGA+AGG | + | chr8_1:9362748-9362767 | Msa1177030:five_prime_UTR | 30.0% |
!!! | TTCCTTATTTTCTTCGAAGT+GGG | + | chr8_1:9362812-9362831 | Msa1177030:five_prime_UTR | 30.0% |
TTGAAAGAACAAAACAACGT+TGG | - | chr8_1:9362915-9362934 | None:intergenic | 30.0% | |
ATGCACCGAAAAAATTTATC+CGG | + | chr8_1:9363058-9363077 | Msa1177030:intron | 30.0% | |
GTTGAAACACTGAAAATTGA+AGG | + | chr8_1:9363103-9363122 | Msa1177030:intron | 30.0% | |
!!! | AATAAAGGGTATTTTGGATC+GGG | + | chr8_1:9363278-9363297 | Msa1177030:intron | 30.0% |
AAGACATCTTTGACTCTATA+AGG | + | chr8_1:9363439-9363458 | Msa1177030:intron | 30.0% | |
GATTGACTAATTAAGGTCTT+TGG | + | chr8_1:9363472-9363491 | Msa1177030:intron | 30.0% | |
TTTCTCTATAGTAGCTTACT+AGG | + | chr8_1:9363553-9363572 | Msa1177030:intron | 30.0% | |
ATTCAACTGCACTAAACAAA+AGG | - | chr8_1:9363929-9363948 | None:intergenic | 30.0% | |
GTGCAGTTGAATAATTTCTA+AGG | + | chr8_1:9363937-9363956 | Msa1177030:intron | 30.0% | |
GAAAATCCGTTAAGATTGAA+AGG | + | chr8_1:9364010-9364029 | Msa1177030:CDS | 30.0% | |
GCTTTCATTTCCTTTATACA+TGG | + | chr8_1:9364212-9364231 | Msa1177030:intron | 30.0% | |
AACGAAAACTCCATGTATAA+AGG | - | chr8_1:9364225-9364244 | None:intergenic | 30.0% | |
!! | GAGTTTTCGTTTTTGTTATC+CGG | + | chr8_1:9364234-9364253 | Msa1177030:intron | 30.0% |
AATGGGGGAAATTTCAAATA+AGG | - | chr8_1:9364681-9364700 | None:intergenic | 30.0% | |
ATTTGAGAGCCAATCAAAAT+GGG | - | chr8_1:9364698-9364717 | None:intergenic | 30.0% | |
AATTTGAGAGCCAATCAAAA+TGG | - | chr8_1:9364699-9364718 | None:intergenic | 30.0% | |
!! | TTTTGATTGGCTCTCAAATT+CGG | + | chr8_1:9364699-9364718 | Msa1177030:intron | 30.0% |
! | ATCTATGATGGGATTTACAT+CGG | + | chr8_1:9364777-9364796 | Msa1177030:intron | 30.0% |
TTCAAAAGTGAAAGCAATCT+GGG | - | chr8_1:9364804-9364823 | None:intergenic | 30.0% | |
TTTCAAAAGTGAAAGCAATC+TGG | - | chr8_1:9364805-9364824 | None:intergenic | 30.0% | |
! | TGCCCATTAAAAACTACTTT+TGG | + | chr8_1:9364830-9364849 | Msa1177030:intron | 30.0% |
TAACAAAGCAAATGAACCTA+TGG | - | chr8_1:9364988-9365007 | None:intergenic | 30.0% | |
AGATAAACATTCAACCACAA+AGG | - | chr8_1:9365399-9365418 | None:intergenic | 30.0% | |
ATATAGGGGTCAAATTCAAA+TGG | + | chr8_1:9365445-9365464 | Msa1177030:intron | 30.0% | |
ATTCAGTGCATCTAAAGATT+CGG | - | chr8_1:9365532-9365551 | None:intergenic | 30.0% | |
!! | AAATTATGATGGATTTGACC+TGG | + | chr8_1:9365557-9365576 | Msa1177030:intron | 30.0% |
!! | AATTATGATGGATTTGACCT+GGG | + | chr8_1:9365558-9365577 | Msa1177030:intron | 30.0% |
!! | TACTAGTTTGTTGCTCTATT+AGG | + | chr8_1:9365811-9365830 | Msa1177030:intron | 30.0% |
ATGATGATATATCAACAGTG+TGG | + | chr8_1:9365862-9365881 | Msa1177030:intron | 30.0% | |
!! | CTGTCTTATTTATAATGACC+CGG | + | chr8_1:9365981-9366000 | Msa1177030:intron | 30.0% |
! | TTTTCATTCTTCAACTTTCC+GGG | - | chr8_1:9366002-9366021 | None:intergenic | 30.0% |
ATCATGCATTAACAATTGGA+TGG | - | chr8_1:9366207-9366226 | None:intergenic | 30.0% | |
GAATTATTTGATACCAAGAC+TGG | + | chr8_1:9366266-9366285 | Msa1177030:intron | 30.0% | |
ATTACTTGAATAGATGGAGA+AGG | + | chr8_1:9366382-9366401 | Msa1177030:intron | 30.0% | |
TTACTTGAATAGATGGAGAA+GGG | + | chr8_1:9366383-9366402 | Msa1177030:intron | 30.0% | |
TGAATCACACAACAATAATG+CGG | + | chr8_1:9366680-9366699 | Msa1177030:intron | 30.0% | |
TTTAGTGTCAGTAAAAGATG+AGG | - | chr8_1:9366715-9366734 | None:intergenic | 30.0% | |
ACTGACACTAAAGTAATTCT+TGG | + | chr8_1:9366723-9366742 | Msa1177030:intron | 30.0% | |
!! | CGTGTTTTTATGGGTTTTTT+TGG | + | chr8_1:9366899-9366918 | Msa1177030:intron | 30.0% |
AATAAGCTGATAAGAGCTTA+TGG | - | chr8_1:9367005-9367024 | None:intergenic | 30.0% | |
!! | CTTGTTTTCATAAACTATCC+TGG | - | chr8_1:9367040-9367059 | None:intergenic | 30.0% |
TTACGTTGTTTATCCAAACA+CGG | + | chr8_1:9367159-9367178 | Msa1177030:intron | 30.0% | |
GAAATCGGAAATGAATGAAT+TGG | + | chr8_1:9367328-9367347 | Msa1177030:CDS | 30.0% | |
! | AGTAAGTTTTCTGTACTTAC+AGG | - | chr8_1:9367723-9367742 | None:intergenic | 30.0% |
! | TACTGCTAACAGTTTTCAAA+TGG | + | chr8_1:9367948-9367967 | Msa1177030:three_prime_UTR | 30.0% |
!!! | ATAATTAGTTTTGGCATCGA+TGG | - | chr8_1:9368003-9368022 | None:intergenic | 30.0% |
ACCTTATAGTATCTGAGAAA+AGG | + | chr8_1:9368204-9368223 | Msa1177030:three_prime_UTR | 30.0% | |
! | ACCTTTTCTCAGATACTATA+AGG | - | chr8_1:9368208-9368227 | None:intergenic | 30.0% |
! | GTAATAATTTTGTTCCTCCG+AGG | + | chr8_1:9362771-9362790 | Msa1177030:five_prime_UTR | 35.0% |
!!! | GTTCCTTATTTTCTTCGAAG+TGG | + | chr8_1:9362811-9362830 | Msa1177030:five_prime_UTR | 35.0% |
AACCCACTTCGAAGAAAATA+AGG | - | chr8_1:9362817-9362836 | None:intergenic | 35.0% | |
! | GTTGTTGTTGTGTATCTTTC+AGG | + | chr8_1:9362858-9362877 | Msa1177030:five_prime_UTR | 35.0% |
ACACACATAACACAAGATCT+AGG | - | chr8_1:9363149-9363168 | None:intergenic | 35.0% | |
!! | TATTGTACGTGACTTGTTTG+TGG | + | chr8_1:9363407-9363426 | Msa1177030:intron | 35.0% |
!! | ATTGTACGTGACTTGTTTGT+GGG | + | chr8_1:9363408-9363427 | Msa1177030:intron | 35.0% |
!! | GGAAGTATTTGACTCAATCT+TGG | + | chr8_1:9363958-9363977 | Msa1177030:five_prime_UTR | 35.0% |
!! | AATCTTGGTGCTTATCTCAT+GGG | + | chr8_1:9363973-9363992 | Msa1177030:exon | 35.0% |
AGAAGGCCTTTCAATCTTAA+CGG | - | chr8_1:9364019-9364038 | None:intergenic | 35.0% | |
ACTATGCTTACAGTTGTTAC+AGG | - | chr8_1:9364045-9364064 | None:intergenic | 35.0% | |
AGGAAATGAAAGCAAAAGGT+TGG | - | chr8_1:9364205-9364224 | None:intergenic | 35.0% | |
CGTAAAAGTTGCACAAATGA+TGG | + | chr8_1:9364439-9364458 | Msa1177030:intron | 35.0% | |
! | CACAAATGATGGTTTGTGAT+TGG | + | chr8_1:9364450-9364469 | Msa1177030:intron | 35.0% |
AGATTACTGACATTGAAGCA+CGG | - | chr8_1:9364626-9364645 | None:intergenic | 35.0% | |
!! | GAAATTTCCCCCATTTTGAT+TGG | + | chr8_1:9364686-9364705 | Msa1177030:intron | 35.0% |
TTTGAGAGCCAATCAAAATG+GGG | - | chr8_1:9364697-9364716 | None:intergenic | 35.0% | |
! | CAACTGGATTTGATAATCTG+CGG | + | chr8_1:9364739-9364758 | Msa1177030:intron | 35.0% |
! | AACTGGATTTGATAATCTGC+GGG | + | chr8_1:9364740-9364759 | Msa1177030:intron | 35.0% |
! | ACGGACTATGATATCTATGA+TGG | + | chr8_1:9364765-9364784 | Msa1177030:intron | 35.0% |
CGGACTATGATATCTATGAT+GGG | + | chr8_1:9364766-9364785 | Msa1177030:intron | 35.0% | |
GGCTGAAAGAAACAATAAGT+TGG | - | chr8_1:9365087-9365106 | None:intergenic | 35.0% | |
! | GAATAAAATGGTGGTGCATA+TGG | - | chr8_1:9365132-9365151 | None:intergenic | 35.0% |
! | CACCATTTTATTCACATGGA+GGG | + | chr8_1:9365139-9365158 | Msa1177030:CDS | 35.0% |
! | ACCATTTTATTCACATGGAG+GGG | + | chr8_1:9365140-9365159 | Msa1177030:CDS | 35.0% |
ATGTAAACTTACGATGGCAA+CGG | - | chr8_1:9365181-9365200 | None:intergenic | 35.0% | |
GTGAGAATGTAAACTTACGA+TGG | - | chr8_1:9365187-9365206 | None:intergenic | 35.0% | |
CTTAATGTACCAAACCTTTG+TGG | + | chr8_1:9365382-9365401 | Msa1177030:intron | 35.0% | |
AACATTCAACCACAAAGGTT+TGG | - | chr8_1:9365394-9365413 | None:intergenic | 35.0% | |
!! | ATTATGATGGATTTGACCTG+GGG | + | chr8_1:9365559-9365578 | Msa1177030:intron | 35.0% |
ATCAGTGTTTCCAGATGATT+TGG | - | chr8_1:9365628-9365647 | None:intergenic | 35.0% | |
! | ATAGGAAGTGCAGTTAATTC+TGG | - | chr8_1:9365779-9365798 | None:intergenic | 35.0% |
TTTATCATACCAGTGGTTGT+TGG | - | chr8_1:9366083-9366102 | None:intergenic | 35.0% | |
ATGCAATTAACTCTCAAACG+AGG | - | chr8_1:9366294-9366313 | None:intergenic | 35.0% | |
TCGTTATCCACTAGTAACTA+AGG | + | chr8_1:9366354-9366373 | Msa1177030:intron | 35.0% | |
GAGCATATAGAAACAGCTTA+TGG | + | chr8_1:9366974-9366993 | Msa1177030:intron | 35.0% | |
TATAGAAACAGCTTATGGCA+TGG | + | chr8_1:9366979-9366998 | Msa1177030:intron | 35.0% | |
! | GTGAGAACATTTTCTTTCGA+GGG | - | chr8_1:9367206-9367225 | None:intergenic | 35.0% |
! | TGTGAGAACATTTTCTTTCG+AGG | - | chr8_1:9367207-9367226 | None:intergenic | 35.0% |
ATTTCATAGGCTACAAAGCA+TGG | + | chr8_1:9367428-9367447 | Msa1177030:intron | 35.0% | |
TACAAATGTCAATGTCATGC+TGG | + | chr8_1:9367525-9367544 | Msa1177030:intron | 35.0% | |
!!! | ATTTTGACTTCAGGAAAAGC+TGG | + | chr8_1:9367635-9367654 | Msa1177030:intron | 35.0% |
TGTGAGAACAAACCAAATTC+TGG | + | chr8_1:9367801-9367820 | Msa1177030:CDS | 35.0% | |
TTGAAAACCAGTATTTGCAC+TGG | + | chr8_1:9367881-9367900 | Msa1177030:exon | 35.0% | |
! | GCTAACAGTTTTCAAATGGA+TGG | + | chr8_1:9367952-9367971 | Msa1177030:three_prime_UTR | 35.0% |
! | GGATGGATCAGTTGAATTTT+AGG | + | chr8_1:9367969-9367988 | Msa1177030:three_prime_UTR | 35.0% |
! | ACTTTAGAAAGGGTTGTGAT+TGG | + | chr8_1:9368133-9368152 | Msa1177030:three_prime_UTR | 35.0% |
AAAAAAACAGCAATCCTCGG+AGG | - | chr8_1:9362788-9362807 | None:intergenic | 40.0% | |
!! | TTGTACGTGACTTGTTTGTG+GGG | + | chr8_1:9363409-9363428 | Msa1177030:intron | 40.0% |
!! | CAATCTTGGTGCTTATCTCA+TGG | + | chr8_1:9363972-9363991 | Msa1177030:exon | 40.0% |
ACAGTTGTTACAGGTGAAGA+AGG | - | chr8_1:9364036-9364055 | None:intergenic | 40.0% | |
ATGTTCACGTCTATCCTGAT+TGG | + | chr8_1:9364163-9364182 | Msa1177030:CDS | 40.0% | |
TGTTCACGTCTATCCTGATT+GGG | + | chr8_1:9364164-9364183 | Msa1177030:CDS | 40.0% | |
CAAAGCAATTACACGTGAAC+CGG | - | chr8_1:9364256-9364275 | None:intergenic | 40.0% | |
TTGAGAGCCAATCAAAATGG+GGG | - | chr8_1:9364696-9364715 | None:intergenic | 40.0% | |
! | ACTGGATTTGATAATCTGCG+GGG | + | chr8_1:9364741-9364760 | Msa1177030:intron | 40.0% |
! | ATTTGATAATCTGCGGGGAA+CGG | + | chr8_1:9364746-9364765 | Msa1177030:intron | 40.0% |
ATTATTCATCCCTTCGAGCA+AGG | - | chr8_1:9365061-9365080 | None:intergenic | 40.0% | |
AGCCTATGATGCATCCATAT+GGG | + | chr8_1:9365103-9365122 | Msa1177030:intron | 40.0% | |
! | TAAAATGGTGGTGCATATGG+CGG | - | chr8_1:9365129-9365148 | None:intergenic | 40.0% |
! | GCACCACCATTTTATTCACA+TGG | + | chr8_1:9365135-9365154 | Msa1177030:CDS | 40.0% |
CCTCCATGTGAATAAAATGG+TGG | - | chr8_1:9365141-9365160 | None:intergenic | 40.0% | |
! | CCACCATTTTATTCACATGG+AGG | + | chr8_1:9365138-9365157 | Msa1177030:CDS | 40.0% |
ACCCCTCCATGTGAATAAAA+TGG | - | chr8_1:9365144-9365163 | None:intergenic | 40.0% | |
GGGTCAAATTCAAATGGTCA+AGG | + | chr8_1:9365451-9365470 | Msa1177030:CDS | 40.0% | |
AAACTTACAGCTGGTGAAGA+TGG | - | chr8_1:9365481-9365500 | None:intergenic | 40.0% | |
!! | TTATGATGGATTTGACCTGG+GGG | + | chr8_1:9365560-9365579 | Msa1177030:intron | 40.0% |
!! | GTGTTTCCAGATGATTTGGT+TGG | - | chr8_1:9365624-9365643 | None:intergenic | 40.0% |
ATCATCTGGAAACACTGATC+AGG | + | chr8_1:9365629-9365648 | Msa1177030:CDS | 40.0% | |
TCATCTGGAAACACTGATCA+GGG | + | chr8_1:9365630-9365649 | Msa1177030:CDS | 40.0% | |
CTTGCAATGTCAATAGGCAA+TGG | + | chr8_1:9365684-9365703 | Msa1177030:CDS | 40.0% | |
! | ATCACGGAGGTTTGTTCTAT+AGG | + | chr8_1:9365746-9365765 | Msa1177030:intron | 40.0% |
CTAGTAGAGCAAGGAAACAT+AGG | - | chr8_1:9365797-9365816 | None:intergenic | 40.0% | |
AGCAACAAACTAGTAGAGCA+AGG | - | chr8_1:9365806-9365825 | None:intergenic | 40.0% | |
TATCAACAGTGTGGATACTG+AGG | + | chr8_1:9365871-9365890 | Msa1177030:intron | 40.0% | |
ATCAACAGTGTGGATACTGA+GGG | + | chr8_1:9365872-9365891 | Msa1177030:intron | 40.0% | |
! | CATTGGTCTGTGCATAACAT+TGG | - | chr8_1:9366031-9366050 | None:intergenic | 40.0% |
CAATGTTATGCACAGACCAA+TGG | + | chr8_1:9366029-9366048 | Msa1177030:intron | 40.0% | |
! | GCTTCTTTTCCTTGTTCCAT+TGG | - | chr8_1:9366048-9366067 | None:intergenic | 40.0% |
ATGGAACAAGGAAAAGAAGC+CGG | + | chr8_1:9366048-9366067 | Msa1177030:CDS | 40.0% | |
TCATGTCATGACTGTAACCA+TGG | + | chr8_1:9366142-9366161 | Msa1177030:intron | 40.0% | |
!! | TCAATGGATTGTTGACACCA+TGG | - | chr8_1:9366162-9366181 | None:intergenic | 40.0% |
! | GATAACTGACACCGTCTTTT+TGG | - | chr8_1:9366455-9366474 | None:intergenic | 40.0% |
AACCAGTGCTGCAGAAAAAA+TGG | + | chr8_1:9366477-9366496 | Msa1177030:CDS | 40.0% | |
!!! | AACCATTTTTTCTGCAGCAC+TGG | - | chr8_1:9366482-9366501 | None:intergenic | 40.0% |
AGTGCTGCAGAAAAAATGGT+TGG | + | chr8_1:9366481-9366500 | Msa1177030:CDS | 40.0% | |
! | GTCATAGCTGAAGAAAGTAC+AGG | - | chr8_1:9366508-9366527 | None:intergenic | 40.0% |
GTCAGTAAAAGATGAGGATG+AGG | - | chr8_1:9366709-9366728 | None:intergenic | 40.0% | |
CTTATTTCCATAAGCTCACC+AGG | + | chr8_1:9367019-9367038 | Msa1177030:intron | 40.0% | |
AAACTATCCTGGTGAGCTTA+TGG | - | chr8_1:9367029-9367048 | None:intergenic | 40.0% | |
! | CATTTTCTTTCGAGGGCTAT+AGG | - | chr8_1:9367199-9367218 | None:intergenic | 40.0% |
CGTTCTTATCTCCTCTATAC+AGG | + | chr8_1:9367247-9367266 | Msa1177030:intron | 40.0% | |
!! | TGCATTGACTGCTGAGAATT+TGG | + | chr8_1:9367301-9367320 | Msa1177030:CDS | 40.0% |
! | TGAGAATTTGGCGCTGAAAT+CGG | + | chr8_1:9367313-9367332 | Msa1177030:CDS | 40.0% |
AAAGCTGGAAAACACTCAAC+TGG | + | chr8_1:9367650-9367669 | Msa1177030:CDS | 40.0% | |
AAGCTGGAAAACACTCAACT+GGG | + | chr8_1:9367651-9367670 | Msa1177030:CDS | 40.0% | |
TGCAGCTCTATCATCAGAAT+TGG | - | chr8_1:9367763-9367782 | None:intergenic | 40.0% | |
AAATCCTAGAGCTAATGCTG+TGG | + | chr8_1:9367851-9367870 | Msa1177030:CDS | 40.0% | |
CAACAAACCAGTGCAAATAC+TGG | - | chr8_1:9367891-9367910 | None:intergenic | 40.0% | |
CACATGTCAGGCGTACATTT+GGG | - | chr8_1:9363696-9363715 | None:intergenic | 45.0% | |
ACACATGTCAGGCGTACATT+TGG | - | chr8_1:9363697-9363716 | None:intergenic | 45.0% | |
ATCAGCCATCAACACATGTC+AGG | - | chr8_1:9363708-9363727 | None:intergenic | 45.0% | |
ATGAAGCAGCGACACAGATA+TGG | - | chr8_1:9363808-9363827 | None:intergenic | 45.0% | |
TTATCTCATGGGAAACAGCG+AGG | + | chr8_1:9363984-9364003 | Msa1177030:exon | 45.0% | |
GATAGACGTGAACATTCGAC+GGG | - | chr8_1:9364158-9364177 | None:intergenic | 45.0% | |
GGATAGACGTGAACATTCGA+CGG | - | chr8_1:9364159-9364178 | None:intergenic | 45.0% | |
!! | CAAAAGGTTGGTAACCTGCA+TGG | - | chr8_1:9364193-9364212 | None:intergenic | 45.0% |
CGATGAAGACAACTCCACAT+TGG | - | chr8_1:9364591-9364610 | None:intergenic | 45.0% | |
ATAGTGTCGCAACTTGCAAC+TGG | + | chr8_1:9364723-9364742 | Msa1177030:intron | 45.0% | |
! | GCAGCTGAGTTGAAATATGG+TGG | - | chr8_1:9364911-9364930 | None:intergenic | 45.0% |
! | GCAGCAGCTGAGTTGAAATA+TGG | - | chr8_1:9364914-9364933 | None:intergenic | 45.0% |
TTCGAGCAAGGATGTACACA+AGG | - | chr8_1:9365049-9365068 | None:intergenic | 45.0% | |
TTGTGTACATCCTTGCTCGA+AGG | + | chr8_1:9365048-9365067 | Msa1177030:intron | 45.0% | |
TGTGTACATCCTTGCTCGAA+GGG | + | chr8_1:9365049-9365068 | Msa1177030:intron | 45.0% | |
CAGCCTATGATGCATCCATA+TGG | + | chr8_1:9365102-9365121 | Msa1177030:intron | 45.0% | |
! | GTTGGTGTCTCTATGCTTGT+AGG | - | chr8_1:9365606-9365625 | None:intergenic | 45.0% |
GAGACACCAACCAAATCATC+TGG | + | chr8_1:9365615-9365634 | Msa1177030:CDS | 45.0% | |
! | GATGGGCTTGCAATGTCAAT+AGG | + | chr8_1:9365678-9365697 | Msa1177030:CDS | 45.0% |
GTTGCTCTATTAGGTTCGTG+TGG | + | chr8_1:9365820-9365839 | Msa1177030:intron | 45.0% | |
CTACAGGGGTGAGAAATTTC+TGG | + | chr8_1:9365921-9365940 | Msa1177030:intron | 45.0% | |
ATGCACAGACCAATGGAACA+AGG | + | chr8_1:9366036-9366055 | Msa1177030:intron | 45.0% | |
TGGAACAAGGAAAAGAAGCC+GGG | + | chr8_1:9366049-9366068 | Msa1177030:CDS | 45.0% | |
TTTGGAAGCAGCAGTCTCTT+TGG | - | chr8_1:9366437-9366456 | None:intergenic | 45.0% | |
! | GACTGCTGCTTCCAAAAAGA+CGG | + | chr8_1:9366441-9366460 | Msa1177030:CDS | 45.0% |
TTCAGCTATGACCACATCAC+TGG | + | chr8_1:9366516-9366535 | Msa1177030:CDS | 45.0% | |
ATCTTACAGTACCTGCATCC+AGG | - | chr8_1:9366608-9366627 | None:intergenic | 45.0% | |
TTCAGCTCACGCTCATTCTA+AGG | - | chr8_1:9366757-9366776 | None:intergenic | 45.0% | |
GTGAATCTGCTAGAAGATCC+AGG | + | chr8_1:9366803-9366822 | Msa1177030:CDS | 45.0% | |
GGCTATAGGTACATGCATCA+AGG | - | chr8_1:9367185-9367204 | None:intergenic | 45.0% | |
TTCTGATGATAGAGCTGCAG+AGG | + | chr8_1:9367764-9367783 | Msa1177030:CDS | 45.0% | |
AGAGCTGCAGAGGAAGAAAA+TGG | + | chr8_1:9367774-9367793 | Msa1177030:CDS | 45.0% | |
GTACGCCTGACATGTGTTGA+TGG | + | chr8_1:9363700-9363719 | Msa1177030:intron | 50.0% | |
!! | ATTCGACGGGTTGGCTTGAT+TGG | - | chr8_1:9364145-9364164 | None:intergenic | 50.0% |
ATGCTCCTCACCCATACATG+TGG | + | chr8_1:9364942-9364961 | Msa1177030:CDS | 50.0% | |
TGCTCCTCACCCATACATGT+GGG | + | chr8_1:9364943-9364962 | Msa1177030:CDS | 50.0% | |
! | AACCTATGGAGCACTACCTG+TGG | - | chr8_1:9364974-9364993 | None:intergenic | 50.0% |
GGCCCATATGGATGCATCAT+AGG | - | chr8_1:9365108-9365127 | None:intergenic | 50.0% | |
AAACTTACGATGGCAACGGC+AGG | - | chr8_1:9365177-9365196 | None:intergenic | 50.0% | |
TGACCTGGGGGAAACTATTC+AGG | + | chr8_1:9365572-9365591 | Msa1177030:intron | 50.0% | |
TGGGGGAAACTATTCAGGCT+GGG | + | chr8_1:9365577-9365596 | Msa1177030:intron | 50.0% | |
GAACAAACCTCCGTGATAGC+CGG | - | chr8_1:9365743-9365762 | None:intergenic | 50.0% | |
GCTCTATTAGGTTCGTGTGG+TGG | + | chr8_1:9365823-9365842 | Msa1177030:intron | 50.0% | |
GAAGCGATGGCAACACTACA+GGG | + | chr8_1:9365906-9365925 | Msa1177030:CDS | 50.0% | |
AAGCGATGGCAACACTACAG+GGG | + | chr8_1:9365907-9365926 | Msa1177030:CDS | 50.0% | |
ACAAGGAAAAGAAGCCGGGA+TGG | + | chr8_1:9366053-9366072 | Msa1177030:CDS | 50.0% | |
CAAGGAAAAGAAGCCGGGAT+GGG | + | chr8_1:9366054-9366073 | Msa1177030:CDS | 50.0% | |
TGACCACATCACTGGAACTG+AGG | + | chr8_1:9366524-9366543 | Msa1177030:CDS | 50.0% | |
GTTCCTCAGTTCCAGTGATG+TGG | - | chr8_1:9366530-9366549 | None:intergenic | 50.0% | |
CACTGGTGGAAATAGGCGAA+GGG | - | chr8_1:9366552-9366571 | None:intergenic | 50.0% | |
!! | TGTGGAGCACTGGTGGAAAT+AGG | - | chr8_1:9366559-9366578 | None:intergenic | 50.0% |
GGCAAAACTCCACAAGGTTG+TGG | - | chr8_1:9366577-9366596 | None:intergenic | 50.0% | |
TCAGGAGGCAAAACTCCACA+AGG | - | chr8_1:9366583-9366602 | None:intergenic | 50.0% | |
! | GAGTTTTGCCTCCTGAAACC+TGG | + | chr8_1:9366587-9366606 | Msa1177030:CDS | 50.0% |
AGTACCTGCATCCAGGTTTC+AGG | - | chr8_1:9366601-9366620 | None:intergenic | 50.0% | |
CTGCTAGAAGATCCAGGCTT+AGG | + | chr8_1:9366809-9366828 | Msa1177030:CDS | 50.0% | |
AAGATCCAGGCTTAGGAAGC+AGG | + | chr8_1:9366816-9366835 | Msa1177030:CDS | 50.0% | |
TCATACCTGCTTCCTAAGCC+TGG | - | chr8_1:9366824-9366843 | None:intergenic | 50.0% | |
ACATGCATCAAGGCCGTGTT+TGG | - | chr8_1:9367175-9367194 | None:intergenic | 50.0% | |
TATCTCCTCTATACAGGCCG+AGG | + | chr8_1:9367253-9367272 | Msa1177030:intron | 50.0% | |
TCGTGCCAATTCTTCAGCCT+CGG | - | chr8_1:9367273-9367292 | None:intergenic | 50.0% | |
CAAAGCATGGACACAGACAC+TGG | + | chr8_1:9367441-9367460 | Msa1177030:intron | 50.0% | |
GCAGCGACGCTTCATATTGA+AGG | - | chr8_1:9367572-9367591 | None:intergenic | 50.0% | |
CGCAGCTTTGCACCAGAATT+TGG | - | chr8_1:9367816-9367835 | None:intergenic | 50.0% | |
CTCATGGGAAACAGCGAGGA+TGG | + | chr8_1:9363988-9364007 | Msa1177030:exon | 55.0% | |
GACGTGAACATTCGACGGGT+TGG | - | chr8_1:9364154-9364173 | None:intergenic | 55.0% | |
TTCAACTCAGCTGCTGCTCC+TGG | + | chr8_1:9364917-9364936 | Msa1177030:CDS | 55.0% | |
! | TATGGGTGAGGAGCATGACC+AGG | - | chr8_1:9364938-9364957 | None:intergenic | 55.0% |
GCTCCTCACCCATACATGTG+GGG | + | chr8_1:9364944-9364963 | Msa1177030:CDS | 55.0% | |
GTGGTGGTCCCCACATGTAT+GGG | - | chr8_1:9364955-9364974 | None:intergenic | 55.0% | |
TGTGGTGGTCCCCACATGTA+TGG | - | chr8_1:9364956-9364975 | None:intergenic | 55.0% | |
ATACATGTGGGGACCACCAC+AGG | + | chr8_1:9364955-9364974 | Msa1177030:CDS | 55.0% | |
! | CTATGGAGCACTACCTGTGG+TGG | - | chr8_1:9364971-9364990 | None:intergenic | 55.0% |
CACCACAGGTAGTGCTCCAT+AGG | + | chr8_1:9364969-9364988 | Msa1177030:intron | 55.0% | |
CAGCCTGAATAGTTTCCCCC+AGG | - | chr8_1:9365578-9365597 | None:intergenic | 55.0% | |
CTGGGGGAAACTATTCAGGC+TGG | + | chr8_1:9365576-9365595 | Msa1177030:intron | 55.0% | |
! | AATGCTGACAGTGCTGAGCG+TGG | + | chr8_1:9365708-9365727 | Msa1177030:CDS | 55.0% |
! | ATGCTGACAGTGCTGAGCGT+GGG | + | chr8_1:9365709-9365728 | Msa1177030:CDS | 55.0% |
GATACTGAGGGTTCCAGCGA+TGG | + | chr8_1:9365884-9365903 | Msa1177030:CDS | 55.0% | |
GGAAGCGATGGCAACACTAC+AGG | + | chr8_1:9365905-9365924 | Msa1177030:CDS | 55.0% | |
! | TGGTTGTTGGTGTCCCATCC+CGG | - | chr8_1:9366070-9366089 | None:intergenic | 55.0% |
GATGGGACACCAACAACCAC+TGG | + | chr8_1:9366071-9366090 | Msa1177030:CDS | 55.0% | |
! | CTCAAACGAGGTGCCAGTCT+TGG | - | chr8_1:9366282-9366301 | None:intergenic | 55.0% |
! | GCACTGGTGGAAATAGGCGA+AGG | - | chr8_1:9366553-9366572 | None:intergenic | 55.0% |
!! | ACAAGGTTGTGGAGCACTGG+TGG | - | chr8_1:9366566-9366585 | None:intergenic | 55.0% |
ACCAGTGCTCCACAACCTTG+TGG | + | chr8_1:9366565-9366584 | Msa1177030:CDS | 55.0% | |
TCCACAAGGTTGTGGAGCAC+TGG | - | chr8_1:9366569-9366588 | None:intergenic | 55.0% | |
ACCTGCATCCAGGTTTCAGG+AGG | - | chr8_1:9366598-9366617 | None:intergenic | 55.0% | |
AGCGTGAGCTGAAACGTGAG+AGG | + | chr8_1:9366764-9366783 | Msa1177030:CDS | 55.0% | |
GTGAGCTGAAACGTGAGAGG+AGG | + | chr8_1:9366767-9366786 | Msa1177030:CDS | 55.0% | |
TTCAGCCTCGGCCTGTATAG+AGG | - | chr8_1:9367261-9367280 | None:intergenic | 55.0% | |
ACAGGCCGAGGCTGAAGAAT+TGG | + | chr8_1:9367265-9367284 | Msa1177030:intron | 55.0% | |
! | GCTGCCACAGCATTAGCTCT+AGG | - | chr8_1:9367858-9367877 | None:intergenic | 55.0% |
TCCTGATTGGGCTGCCATGC+AGG | + | chr8_1:9364176-9364195 | Msa1177030:CDS | 60.0% | |
ACCTGCATGGCAGCCCAATC+AGG | - | chr8_1:9364180-9364199 | None:intergenic | 60.0% | |
GGTCCCCACATGTATGGGTG+AGG | - | chr8_1:9364950-9364969 | None:intergenic | 60.0% | |
GGTGCATATGGCGGCCCATA+TGG | - | chr8_1:9365120-9365139 | None:intergenic | 60.0% | |
! | TGCTGACAGTGCTGAGCGTG+GGG | + | chr8_1:9365710-9365729 | Msa1177030:CDS | 60.0% |
GGGCGGAAAACCGGCTATCA+CGG | + | chr8_1:9365730-9365749 | Msa1177030:CDS | 60.0% | |
CGGAAAACCGGCTATCACGG+AGG | + | chr8_1:9365733-9365752 | Msa1177030:CDS | 60.0% | |
GGTTCCAGCGATGGAAGCGA+TGG | + | chr8_1:9365893-9365912 | Msa1177030:CDS | 60.0% | |
GTTGCCATCGCTTCCATCGC+TGG | - | chr8_1:9365900-9365919 | None:intergenic | 60.0% | |
GCCTCCTGAAACCTGGATGC+AGG | + | chr8_1:9366594-9366613 | Msa1177030:CDS | 60.0% | |
! | TGACAGTGCTGAGCGTGGGG+CGG | + | chr8_1:9365713-9365732 | Msa1177030:CDS | 65.0% |
CTGAGCGTGGGGCGGAAAAC+CGG | + | chr8_1:9365721-9365740 | Msa1177030:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 9362701 | 9368258 | 9362701 | ID=Msa1177030;Name=Msa1177030 |
chr8_1 | mRNA | 9362701 | 9368258 | 9362701 | ID=Msa1177030-mRNA-1;Parent=Msa1177030;Name=Msa1177030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|1|1|1|0.91|0.84|13|374|422 |
chr8_1 | exon | 9362701 | 9362879 | 9362701 | ID=Msa1177030-mRNA-1:exon:3125;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9363938 | 9364053 | 9363938 | ID=Msa1177030-mRNA-1:exon:3126;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9364135 | 9364197 | 9364135 | ID=Msa1177030-mRNA-1:exon:3127;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9364881 | 9364976 | 9364881 | ID=Msa1177030-mRNA-1:exon:3128;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9365105 | 9365188 | 9365105 | ID=Msa1177030-mRNA-1:exon:3129;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9365451 | 9365492 | 9365451 | ID=Msa1177030-mRNA-1:exon:3130;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9365594 | 9365754 | 9365594 | ID=Msa1177030-mRNA-1:exon:3131;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9365880 | 9365928 | 9365880 | ID=Msa1177030-mRNA-1:exon:3132;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9366044 | 9366092 | 9366044 | ID=Msa1177030-mRNA-1:exon:3133;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9366395 | 9366615 | 9366395 | ID=Msa1177030-mRNA-1:exon:3134;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9366760 | 9366837 | 9366760 | ID=Msa1177030-mRNA-1:exon:3135;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9367269 | 9367394 | 9367269 | ID=Msa1177030-mRNA-1:exon:3136;Parent=Msa1177030-mRNA-1 |
chr8_1 | exon | 9367648 | 9368258 | 9367648 | ID=Msa1177030-mRNA-1:exon:3137;Parent=Msa1177030-mRNA-1 |
chr8_1 | five_prime_UTR | 9362701 | 9362879 | 9362701 | ID=Msa1177030-mRNA-1:five_prime_utr;Parent=Msa1177030-mRNA-1 |
chr8_1 | five_prime_UTR | 9363938 | 9363990 | 9363938 | ID=Msa1177030-mRNA-1:five_prime_utr;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9363991 | 9364053 | 9363991 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9364135 | 9364197 | 9364135 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9364881 | 9364976 | 9364881 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9365105 | 9365188 | 9365105 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9365451 | 9365492 | 9365451 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9365594 | 9365754 | 9365594 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9365880 | 9365928 | 9365880 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9366044 | 9366092 | 9366044 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9366395 | 9366615 | 9366395 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9366760 | 9366837 | 9366760 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9367269 | 9367394 | 9367269 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | CDS | 9367648 | 9367884 | 9367648 | ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1 |
chr8_1 | three_prime_UTR | 9367885 | 9368258 | 9367885 | ID=Msa1177030-mRNA-1:three_prime_utr;Parent=Msa1177030-mRNA-1 |
Gene Sequence |
Protein sequence |