AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177030 MtrunA17_Chr8g0347741 95.498 422 19 0 1 422 1 422 0.0 830
Msa1177030 MtrunA17_Chr7g0275321 71.329 429 110 7 1 421 1 424 0.0 595
Msa1177030 MtrunA17_Chr5g0410531 35.751 386 198 15 1 347 1 375 7.59e-47 166
Msa1177030 MtrunA17_Chr8g0373571 35.150 367 180 13 1 348 1 328 2.22e-40 147
Msa1177030 MtrunA17_Chr8g0369161 32.759 406 200 16 1 354 1 385 4.83e-40 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177030 AT2G46270.1 52.804 428 148 16 1 421 1 381 5.32e-120 354
Msa1177030 AT2G46270.3 52.804 428 148 16 1 421 1 381 5.32e-120 354
Msa1177030 AT2G46270.2 50.701 428 134 15 1 421 1 358 3.19e-109 326
Msa1177030 AT2G46270.4 50.701 428 134 15 1 421 1 358 3.19e-109 326
Msa1177030 AT4G01120.1 44.028 427 167 15 1 422 1 360 3.32e-85 265
Msa1177030 AT2G35530.1 35.530 349 170 13 36 347 42 372 2.02e-39 146
Msa1177030 AT4G36730.2 34.000 350 167 13 1 348 1 288 1.11e-35 134
Msa1177030 AT4G36730.1 34.000 350 169 13 1 348 1 290 1.46e-34 130
Msa1177030 AT1G32150.1 35.325 385 188 17 1 347 1 362 1.91e-34 132
Msa1177030 AT5G15830.1 40.000 105 57 3 251 355 47 145 6.81e-11 61.6

Find 133 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGTTAGCAGTAATTT+TGG 0.154999 8_1:-9367941 None:intergenic
GTTGTTGTTGTGTATCTTTC+AGG 0.162059 8_1:+9362858 Msa1177030:five_prime_UTR
CGCAGCTTTGCACCAGAATT+TGG 0.174496 8_1:-9367813 None:intergenic
TTATATCTTCAGGCATATTA+TGG 0.179056 8_1:+9364869 Msa1177030:intron
TGCATTGACTGCTGAGAATT+TGG 0.206598 8_1:+9367301 Msa1177030:CDS
TTTGTACATTGAAGAGAATT+AGG 0.276493 8_1:+9368095 Msa1177030:three_prime_UTR
GTTGGTGTCTCTATGCTTGT+AGG 0.280489 8_1:-9365603 None:intergenic
GATTGAAAATGCTACATTAA+AGG 0.302646 8_1:+9367373 Msa1177030:CDS
AGTACCTGCATCCAGGTTTC+AGG 0.304101 8_1:-9366598 None:intergenic
GTTTGTTGATTATGTAGTTT+TGG 0.309343 8_1:+9367903 Msa1177030:three_prime_UTR
ACCCCTCCATGTGAATAAAA+TGG 0.310681 8_1:-9365141 None:intergenic
CTTCCTTAAATGAACGAAAA+TGG 0.313058 8_1:-9362747 None:intergenic
TTTGGAAGCAGCAGTCTCTT+TGG 0.315745 8_1:-9366434 None:intergenic
GTGCAGTTGAATAATTTCTA+AGG 0.328604 8_1:+9363937 Msa1177030:intron
TGAAAAGTAATAATTAGTTT+TGG 0.331761 8_1:-9368009 None:intergenic
ATTCGACGGGTTGGCTTGAT+TGG 0.332587 8_1:-9364142 None:intergenic
TGTGAGAACAAACCAAATTC+TGG 0.333683 8_1:+9367801 Msa1177030:CDS
AACCCACTTCGAAGAAAATA+AGG 0.344516 8_1:-9362814 None:intergenic
ATCAGTGTTTCCAGATGATT+TGG 0.348179 8_1:-9365625 None:intergenic
ACTATGCTTACAGTTGTTAC+AGG 0.353749 8_1:-9364042 None:intergenic
TGTGGAGCACTGGTGGAAAT+AGG 0.361837 8_1:-9366556 None:intergenic
AAAGCTGGAAAACACTCAAC+TGG 0.369633 8_1:+9367650 Msa1177030:CDS
TCCTGATTGGGCTGCCATGC+AGG 0.378974 8_1:+9364176 Msa1177030:CDS
GATGGGCTTGCAATGTCAAT+AGG 0.380086 8_1:+9365678 Msa1177030:CDS
TATATCTTCAGGCATATTAT+GGG 0.390466 8_1:+9364870 Msa1177030:intron
TGTGGTGGTCCCCACATGTA+TGG 0.390846 8_1:-9364953 None:intergenic
TGCAGCTCTATCATCAGAAT+TGG 0.394477 8_1:-9367760 None:intergenic
GGAAGTATTTGACTCAATCT+TGG 0.394614 8_1:+9363958 Msa1177030:five_prime_UTR
ACAGGCCGAGGCTGAAGAAT+TGG 0.394679 8_1:+9367265 Msa1177030:intron
AGAGCTGCAGAGGAAGAAAA+TGG 0.398971 8_1:+9367774 Msa1177030:CDS
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 8_1:-9364911 None:intergenic
CAGCCTATGATGCATCCATA+TGG 0.403301 8_1:+9365102 Msa1177030:intron
TGAGAATTTGGCGCTGAAAT+CGG 0.404953 8_1:+9367313 Msa1177030:CDS
ACTTTAGAAAGGGTTGTGAT+TGG 0.406895 8_1:+9368133 Msa1177030:three_prime_UTR
CTGAGCGTGGGGCGGAAAAC+CGG 0.409125 8_1:+9365721 Msa1177030:CDS
ATTGGAATCGATATATGATT+TGG 0.411970 8_1:+9368151 Msa1177030:three_prime_UTR
ACCTGCATGGCAGCCCAATC+AGG 0.417831 8_1:-9364177 None:intergenic
GGTGCATATGGCGGCCCATA+TGG 0.422943 8_1:-9365117 None:intergenic
CAACAAACCAGTGCAAATAC+TGG 0.433037 8_1:-9367888 None:intergenic
ATCATCTGGAAACACTGATC+AGG 0.436322 8_1:+9365629 Msa1177030:CDS
GTTGCCATCGCTTCCATCGC+TGG 0.439957 8_1:-9365897 None:intergenic
AGAAGGCCTTTCAATCTTAA+CGG 0.439968 8_1:-9364016 None:intergenic
AAGATCCAGGCTTAGGAAGC+AGG 0.442737 8_1:+9366816 Msa1177030:CDS
GAGACACCAACCAAATCATC+TGG 0.448010 8_1:+9365615 Msa1177030:CDS
ATGTTCACGTCTATCCTGAT+TGG 0.449162 8_1:+9364163 Msa1177030:CDS
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 8_1:+9364917 Msa1177030:CDS
AAACTTACAGCTGGTGAAGA+TGG 0.461400 8_1:-9365478 None:intergenic
TGTTCACGTCTATCCTGATT+GGG 0.463031 8_1:+9364164 Msa1177030:CDS
GCCTCCTGAAACCTGGATGC+AGG 0.464627 8_1:+9366594 Msa1177030:CDS
GGCCCATATGGATGCATCAT+AGG 0.470629 8_1:-9365105 None:intergenic
TTCAGCTATGACCACATCAC+TGG 0.470650 8_1:+9366516 Msa1177030:CDS
GAAATCGGAAATGAATGAAT+TGG 0.472002 8_1:+9367328 Msa1177030:CDS
CAATCTTGGTGCTTATCTCA+TGG 0.479255 8_1:+9363972 Msa1177030:exon
GGCAAAACTCCACAAGGTTG+TGG 0.479999 8_1:-9366574 None:intergenic
GGAAGCGATGGCAACACTAC+AGG 0.486034 8_1:+9365905 Msa1177030:CDS
TCATACCTGCTTCCTAAGCC+TGG 0.486648 8_1:-9366821 None:intergenic
CTGCTAGAAGATCCAGGCTT+AGG 0.486710 8_1:+9366809 Msa1177030:CDS
GGGCGGAAAACCGGCTATCA+CGG 0.489814 8_1:+9365730 Msa1177030:CDS
GAATAAAATGGTGGTGCATA+TGG 0.490133 8_1:-9365129 None:intergenic
TGGTTGTTGGTGTCCCATCC+CGG 0.497265 8_1:-9366067 None:intergenic
TTTATCATACCAGTGGTTGT+TGG 0.502643 8_1:-9366080 None:intergenic
TCCACAAGGTTGTGGAGCAC+TGG 0.503689 8_1:-9366566 None:intergenic
ATATAGGGGTCAAATTCAAA+TGG 0.506947 8_1:+9365445 Msa1177030:intron
ATCTTACAGTACCTGCATCC+AGG 0.507964 8_1:-9366605 None:intergenic
ACCTTATAGTATCTGAGAAA+AGG 0.515621 8_1:+9368204 Msa1177030:three_prime_UTR
GACGTGAACATTCGACGGGT+TGG 0.516747 8_1:-9364151 None:intergenic
TGGAACAAGGAAAAGAAGCC+GGG 0.517217 8_1:+9366049 Msa1177030:CDS
TCGTGCCAATTCTTCAGCCT+CGG 0.521120 8_1:-9367270 None:intergenic
ATTACTTGAATAGATGGAGA+AGG 0.522234 8_1:+9366382 Msa1177030:intron
ACAGTTGTTACAGGTGAAGA+AGG 0.523511 8_1:-9364033 None:intergenic
AGCCTATGATGCATCCATAT+GGG 0.523891 8_1:+9365103 Msa1177030:intron
ATACATGTGGGGACCACCAC+AGG 0.528881 8_1:+9364955 Msa1177030:CDS
TTTGAACAGCATTGACGAGA+GGG 0.529641 8_1:+9367692 Msa1177030:CDS
TTACTTGAATAGATGGAGAA+GGG 0.530286 8_1:+9366383 Msa1177030:intron
CTCATGGGAAACAGCGAGGA+TGG 0.530777 8_1:+9363988 Msa1177030:exon
AATCTTGGTGCTTATCTCAT+GGG 0.533227 8_1:+9363973 Msa1177030:exon
ATGGAACAAGGAAAAGAAGC+CGG 0.533912 8_1:+9366048 Msa1177030:CDS
GAAAATCCGTTAAGATTGAA+AGG 0.538090 8_1:+9364010 Msa1177030:CDS
ATGCTGACAGTGCTGAGCGT+GGG 0.539422 8_1:+9365709 Msa1177030:CDS
TTGAAAACCAGTATTTGCAC+TGG 0.541531 8_1:+9367881 Msa1177030:exon
GCTGCCACAGCATTAGCTCT+AGG 0.543381 8_1:-9367855 None:intergenic
TGCTCCTCACCCATACATGT+GGG 0.547429 8_1:+9364943 Msa1177030:CDS
GATACTGAGGGTTCCAGCGA+TGG 0.548274 8_1:+9365884 Msa1177030:CDS
CAAGGAAAAGAAGCCGGGAT+GGG 0.549908 8_1:+9366054 Msa1177030:CDS
GTGAATCTGCTAGAAGATCC+AGG 0.554001 8_1:+9366803 Msa1177030:CDS
ACAAGGTTGTGGAGCACTGG+TGG 0.565799 8_1:-9366563 None:intergenic
ACCAGTGCTCCACAACCTTG+TGG 0.566848 8_1:+9366565 Msa1177030:CDS
TCATCTGGAAACACTGATCA+GGG 0.569446 8_1:+9365630 Msa1177030:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 8_1:+9365906 Msa1177030:CDS
GAACAAACCTCCGTGATAGC+CGG 0.572299 8_1:-9365740 None:intergenic
TGCTGACAGTGCTGAGCGTG+GGG 0.575682 8_1:+9365710 Msa1177030:CDS
ACAAGGAAAAGAAGCCGGGA+TGG 0.577909 8_1:+9366053 Msa1177030:CDS
TATGGGTGAGGAGCATGACC+AGG 0.581544 8_1:-9364935 None:intergenic
GGTTCCAGCGATGGAAGCGA+TGG 0.582155 8_1:+9365893 Msa1177030:CDS
TTTCTGTTTAGATTTGATTG+GGG 0.584346 8_1:+9368056 Msa1177030:three_prime_UTR
TTCTGATGATAGAGCTGCAG+AGG 0.584828 8_1:+9367764 Msa1177030:CDS
GATGGGACACCAACAACCAC+TGG 0.585041 8_1:+9366071 Msa1177030:CDS
GGTCCCCACATGTATGGGTG+AGG 0.585719 8_1:-9364947 None:intergenic
AAACTTACGATGGCAACGGC+AGG 0.589342 8_1:-9365174 None:intergenic
TGACCACATCACTGGAACTG+AGG 0.590038 8_1:+9366524 Msa1177030:CDS
AATGCTGACAGTGCTGAGCG+TGG 0.592809 8_1:+9365708 Msa1177030:CDS
ATGCTCCTCACCCATACATG+TGG 0.594125 8_1:+9364942 Msa1177030:CDS
CAAAAGGTTGGTAACCTGCA+TGG 0.594851 8_1:-9364190 None:intergenic
GTGTTTCCAGATGATTTGGT+TGG 0.595146 8_1:-9365621 None:intergenic
GGGTCAAATTCAAATGGTCA+AGG 0.595761 8_1:+9365451 Msa1177030:CDS
GTTCCTCAGTTCCAGTGATG+TGG 0.596954 8_1:-9366527 None:intergenic
GCACTGGTGGAAATAGGCGA+AGG 0.600927 8_1:-9366550 None:intergenic
CTTGCAATGTCAATAGGCAA+TGG 0.603823 8_1:+9365684 Msa1177030:CDS
GTGGTGGTCCCCACATGTAT+GGG 0.604143 8_1:-9364952 None:intergenic
GTCATAGCTGAAGAAAGTAC+AGG 0.613916 8_1:-9366505 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.615300 8_1:-9364908 None:intergenic
CAATGTTATGCACAGACCAA+TGG 0.615759 8_1:+9366029 Msa1177030:intron
TATCAACAGTGTGGATACTG+AGG 0.618321 8_1:+9365871 Msa1177030:intron
GATAGACGTGAACATTCGAC+GGG 0.622023 8_1:-9364155 None:intergenic
ACCTGCATCCAGGTTTCAGG+AGG 0.622736 8_1:-9366595 None:intergenic
AAGCTGGAAAACACTCAACT+GGG 0.626485 8_1:+9367651 Msa1177030:CDS
GGATAGACGTGAACATTCGA+CGG 0.628969 8_1:-9364156 None:intergenic
GTGAGCTGAAACGTGAGAGG+AGG 0.634017 8_1:+9366767 Msa1177030:CDS
AGCGTGAGCTGAAACGTGAG+AGG 0.634386 8_1:+9366764 Msa1177030:CDS
ATGCACAGACCAATGGAACA+AGG 0.635504 8_1:+9366036 Msa1177030:intron
CTATGGAGCACTACCTGTGG+TGG 0.638683 8_1:-9364968 None:intergenic
ATCAACAGTGTGGATACTGA+GGG 0.652441 8_1:+9365872 Msa1177030:intron
ATGTAAACTTACGATGGCAA+CGG 0.653032 8_1:-9365178 None:intergenic
CACTGGTGGAAATAGGCGAA+GGG 0.655757 8_1:-9366549 None:intergenic
TCAGGAGGCAAAACTCCACA+AGG 0.663588 8_1:-9366580 None:intergenic
TGACAGTGCTGAGCGTGGGG+CGG 0.664059 8_1:+9365713 Msa1177030:CDS
GCTCCTCACCCATACATGTG+GGG 0.694056 8_1:+9364944 Msa1177030:CDS
CGGAAAACCGGCTATCACGG+AGG 0.698828 8_1:+9365733 Msa1177030:CDS
AAATCCTAGAGCTAATGCTG+TGG 0.699726 8_1:+9367851 Msa1177030:CDS
TAAAATGGTGGTGCATATGG+CGG 0.709796 8_1:-9365126 None:intergenic
TTATCTCATGGGAAACAGCG+AGG 0.711063 8_1:+9363984 Msa1177030:exon
CCTCCATGTGAATAAAATGG+TGG 0.718697 8_1:-9365138 None:intergenic
AAGCGATGGCAACACTACAG+GGG 0.742066 8_1:+9365907 Msa1177030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTTGATTTTTGTTTT+AGG + chr8_1:9362952-9362971 Msa1177030:intron 10.0%
!! AAATAGATGAATATTAATAA+AGG + chr8_1:9363263-9363282 Msa1177030:intron 10.0%
!! AATAGATGAATATTAATAAA+GGG + chr8_1:9363264-9363283 Msa1177030:intron 10.0%
!!! ATTATAAAATGTTTTAACAT+GGG - chr8_1:9364073-9364092 None:intergenic 10.0%
!! AATTATATTGGTAAAATATA+GGG + chr8_1:9365430-9365449 Msa1177030:intron 10.0%
!! ACATAAAATTATTTATATCT+TGG + chr8_1:9367404-9367423 Msa1177030:intron 10.0%
!! AAAAAAATATCAAACTAAAC+CGG - chr8_1:9363080-9363099 None:intergenic 15.0%
!!! AATATTAATAAAGGGTATTT+TGG + chr8_1:9363272-9363291 Msa1177030:intron 15.0%
!!! CATTATAAAATGTTTTAACA+TGG - chr8_1:9364074-9364093 None:intergenic 15.0%
!! ATAATATTTCCATAAAAAGT+AGG + chr8_1:9364319-9364338 Msa1177030:intron 15.0%
!!! ATGTAAATTTATTTTTACAC+TGG + chr8_1:9364363-9364382 Msa1177030:intron 15.0%
!! AAAAAAACTTAATGATCTAA+CGG - chr8_1:9364402-9364421 None:intergenic 15.0%
!!! TACACTTTAATTTATGAATA+TGG + chr8_1:9365287-9365306 Msa1177030:intron 15.0%
!! TATGTACTTATGAATTATAT+TGG + chr8_1:9365418-9365437 Msa1177030:intron 15.0%
!! GAATTATATTGGTAAAATAT+AGG + chr8_1:9365429-9365448 Msa1177030:intron 15.0%
!! ATTATATTGGTAAAATATAG+GGG + chr8_1:9365431-9365450 Msa1177030:intron 15.0%
!!! TTAATTGCATTCAATTTTTT+TGG + chr8_1:9366304-9366323 Msa1177030:intron 15.0%
!! CTATTTAGTCAAATTATTAA+CGG - chr8_1:9367489-9367508 None:intergenic 15.0%
!!! TGAAAAGTAATAATTAGTTT+TGG - chr8_1:9368012-9368031 None:intergenic 15.0%
!!! TTTTTTTGCAAAAAAGTTGA+AGG + chr8_1:9363331-9363350 Msa1177030:intron 20.0%
!!! TTTTTTGCAAAAAAGTTGAA+GGG + chr8_1:9363332-9363351 Msa1177030:intron 20.0%
!! TTGTCATGTTAATTATGATA+AGG + chr8_1:9363360-9363379 Msa1177030:intron 20.0%
!!! AGTTATTGATTGACTAATTA+AGG + chr8_1:9363465-9363484 Msa1177030:intron 20.0%
!! AAACCAACTCTTTAAATTAA+AGG + chr8_1:9363666-9363685 Msa1177030:intron 20.0%
!! CTATCTTATCAAATGATTAT+CGG + chr8_1:9363758-9363777 Msa1177030:intron 20.0%
!! ATTACTTTCTTGTTAATAAC+AGG + chr8_1:9364113-9364132 Msa1177030:intron 20.0%
!!! TCTATTAATCCTACTTTTTA+TGG - chr8_1:9364331-9364350 None:intergenic 20.0%
!! ATTGATATTATAAACCAATG+TGG + chr8_1:9364574-9364593 Msa1177030:intron 20.0%
!!! AAGTTTTCATGAAAATATGT+AGG - chr8_1:9364652-9364671 None:intergenic 20.0%
!!! TTATGAATATGGATTATCAA+AGG + chr8_1:9365298-9365317 Msa1177030:intron 20.0%
!! AAAAAATTAAAACTTACAGC+TGG - chr8_1:9365490-9365509 None:intergenic 20.0%
!! CTGAATATTGTAAATTATGA+TGG + chr8_1:9365546-9365565 Msa1177030:intron 20.0%
!! GGTTTAATGAAAAAATTGAA+AGG + chr8_1:9365651-9365670 Msa1177030:CDS 20.0%
!! AAAAAATTGAAAGGATTTGA+TGG + chr8_1:9365660-9365679 Msa1177030:CDS 20.0%
!! AAAAATTGAAAGGATTTGAT+GGG + chr8_1:9365661-9365680 Msa1177030:CDS 20.0%
!!! TGGCTATTATAATTTTTTCT+CGG + chr8_1:9365941-9365960 Msa1177030:intron 20.0%
!! GTATTAATTACTTGAATAGA+TGG + chr8_1:9366376-9366395 Msa1177030:intron 20.0%
!!! TAAGATTTTAGTTCTACTAA+TGG + chr8_1:9366622-9366641 Msa1177030:intron 20.0%
!!! TTATTACTTTTCAGTTTCTT+AGG + chr8_1:9368019-9368038 Msa1177030:three_prime_UTR 20.0%
!!! TTTTCTGTTTAGATTTGATT+GGG + chr8_1:9368055-9368074 Msa1177030:three_prime_UTR 20.0%
!!! TTAGTTTTTAGACTTTAGAA+AGG + chr8_1:9368122-9368141 Msa1177030:three_prime_UTR 20.0%
!!! TAGTTTTTAGACTTTAGAAA+GGG + chr8_1:9368123-9368142 Msa1177030:three_prime_UTR 20.0%
!!! TTTGGTTTTGTATTAACTAT+TGG + chr8_1:9368169-9368188 Msa1177030:three_prime_UTR 20.0%
!! TTACCATTTTCGTTCATTTA+AGG + chr8_1:9362744-9362763 Msa1177030:five_prime_UTR 25.0%
!! ATTTTCGTTCATTTAAGGAA+GGG + chr8_1:9362749-9362768 Msa1177030:five_prime_UTR 25.0%
! ATAAAAAAAACAGCAATCCT+CGG - chr8_1:9362791-9362810 None:intergenic 25.0%
!!! CTAAACCGGATAAATTTTTT+CGG - chr8_1:9363066-9363085 None:intergenic 25.0%
! TTGAAACACTGAAAATTGAA+GGG + chr8_1:9363104-9363123 Msa1177030:intron 25.0%
! GTGTTAAAATCTTTGAACTT+AGG + chr8_1:9363165-9363184 Msa1177030:intron 25.0%
!!! TAATAAAGGGTATTTTGGAT+CGG + chr8_1:9363277-9363296 Msa1177030:intron 25.0%
!! AACATTAGATTTTCTTGCTA+AGG - chr8_1:9363521-9363540 None:intergenic 25.0%
!! ACACCTTTAATTTAAAGAGT+TGG - chr8_1:9363672-9363691 None:intergenic 25.0%
! ATCATTTGATAAGATAGAAG+TGG - chr8_1:9363755-9363774 None:intergenic 25.0%
! ACAATAAAAAAGCAACAGAA+AGG - chr8_1:9363857-9363876 None:intergenic 25.0%
! ATAAAGGAAATGAAAGCAAA+AGG - chr8_1:9364209-9364228 None:intergenic 25.0%
! GTAGGATTAATAGATATACA+CGG + chr8_1:9364337-9364356 Msa1177030:intron 25.0%
! TGTAAAAAGTCTTACATTGT+CGG + chr8_1:9364480-9364499 Msa1177030:intron 25.0%
! AGATCATAAAAGTCTTCAAA+AGG - chr8_1:9364550-9364569 None:intergenic 25.0%
!! CACCAAAAGTAGTTTTTAAT+GGG - chr8_1:9364835-9364854 None:intergenic 25.0%
!! TCACCAAAAGTAGTTTTTAA+TGG - chr8_1:9364836-9364855 None:intergenic 25.0%
! AAAGTTTCTGTTATATCTTC+AGG + chr8_1:9364859-9364878 Msa1177030:intron 25.0%
! TTATATCTTCAGGCATATTA+TGG + chr8_1:9364869-9364888 Msa1177030:intron 25.0%
! TATATCTTCAGGCATATTAT+GGG + chr8_1:9364870-9364889 Msa1177030:intron 25.0%
! AGTTTACATTCTCACATTAT+TGG + chr8_1:9365192-9365211 Msa1177030:intron 25.0%
!! ATCAAAGGTGATTTTTATAC+TGG + chr8_1:9365313-9365332 Msa1177030:intron 25.0%
!! ATTTTCATTCTTCAACTTTC+CGG - chr8_1:9366003-9366022 None:intergenic 25.0%
! ATTATTGTTTATCATACCAG+TGG - chr8_1:9366090-9366109 None:intergenic 25.0%
! CTAGATTACAAATATACTTC+TGG + chr8_1:9366117-9366136 Msa1177030:intron 25.0%
! TTTATCAAGATCATACTCAA+TGG - chr8_1:9366178-9366197 None:intergenic 25.0%
! CATTATCATGCATTAACAAT+TGG - chr8_1:9366211-9366230 None:intergenic 25.0%
! TAATCAGAAATTTAAGAGCA+TGG - chr8_1:9366242-9366261 None:intergenic 25.0%
!!! TCAATTTTTTTGGTGTCATA+TGG + chr8_1:9366314-9366333 Msa1177030:intron 25.0%
! ATTAATACCTTAGTTACTAG+TGG - chr8_1:9366364-9366383 None:intergenic 25.0%
! CGTGACAATTAAAAAAAACA+CGG - chr8_1:9366881-9366900 None:intergenic 25.0%
!!! TTAATTGTCACGTGTTTTTA+TGG + chr8_1:9366889-9366908 Msa1177030:intron 25.0%
!!! TAATTGTCACGTGTTTTTAT+GGG + chr8_1:9366890-9366909 Msa1177030:intron 25.0%
!!! TTTTATGGGTTTTTTTGGAT+TGG + chr8_1:9366904-9366923 Msa1177030:intron 25.0%
! AAAGAAAATGTTCTCACAAA+AGG + chr8_1:9367209-9367228 Msa1177030:intron 25.0%
! GATTGAAAATGCTACATTAA+AGG + chr8_1:9367373-9367392 Msa1177030:CDS 25.0%
! TTTATATCTTGGCATTTCAT+AGG + chr8_1:9367415-9367434 Msa1177030:intron 25.0%
!!! GTATAGATAATTTTGACTTC+AGG + chr8_1:9367626-9367645 Msa1177030:intron 25.0%
!!! GTTTGTTGATTATGTAGTTT+TGG + chr8_1:9367903-9367922 Msa1177030:three_prime_UTR 25.0%
!! AAAACTGTTAGCAGTAATTT+TGG - chr8_1:9367944-9367963 None:intergenic 25.0%
!! GTTTTCTGTTTAGATTTGAT+TGG + chr8_1:9368054-9368073 Msa1177030:three_prime_UTR 25.0%
! TTTCTGTTTAGATTTGATTG+GGG + chr8_1:9368056-9368075 Msa1177030:three_prime_UTR 25.0%
! TTTGTACATTGAAGAGAATT+AGG + chr8_1:9368095-9368114 Msa1177030:three_prime_UTR 25.0%
! ATTGGAATCGATATATGATT+TGG + chr8_1:9368151-9368170 Msa1177030:three_prime_UTR 25.0%
CTTCCTTAAATGAACGAAAA+TGG - chr8_1:9362750-9362769 None:intergenic 30.0%
! CATTTTCGTTCATTTAAGGA+AGG + chr8_1:9362748-9362767 Msa1177030:five_prime_UTR 30.0%
!!! TTCCTTATTTTCTTCGAAGT+GGG + chr8_1:9362812-9362831 Msa1177030:five_prime_UTR 30.0%
TTGAAAGAACAAAACAACGT+TGG - chr8_1:9362915-9362934 None:intergenic 30.0%
ATGCACCGAAAAAATTTATC+CGG + chr8_1:9363058-9363077 Msa1177030:intron 30.0%
GTTGAAACACTGAAAATTGA+AGG + chr8_1:9363103-9363122 Msa1177030:intron 30.0%
!!! AATAAAGGGTATTTTGGATC+GGG + chr8_1:9363278-9363297 Msa1177030:intron 30.0%
AAGACATCTTTGACTCTATA+AGG + chr8_1:9363439-9363458 Msa1177030:intron 30.0%
GATTGACTAATTAAGGTCTT+TGG + chr8_1:9363472-9363491 Msa1177030:intron 30.0%
TTTCTCTATAGTAGCTTACT+AGG + chr8_1:9363553-9363572 Msa1177030:intron 30.0%
ATTCAACTGCACTAAACAAA+AGG - chr8_1:9363929-9363948 None:intergenic 30.0%
GTGCAGTTGAATAATTTCTA+AGG + chr8_1:9363937-9363956 Msa1177030:intron 30.0%
GAAAATCCGTTAAGATTGAA+AGG + chr8_1:9364010-9364029 Msa1177030:CDS 30.0%
GCTTTCATTTCCTTTATACA+TGG + chr8_1:9364212-9364231 Msa1177030:intron 30.0%
AACGAAAACTCCATGTATAA+AGG - chr8_1:9364225-9364244 None:intergenic 30.0%
!! GAGTTTTCGTTTTTGTTATC+CGG + chr8_1:9364234-9364253 Msa1177030:intron 30.0%
AATGGGGGAAATTTCAAATA+AGG - chr8_1:9364681-9364700 None:intergenic 30.0%
ATTTGAGAGCCAATCAAAAT+GGG - chr8_1:9364698-9364717 None:intergenic 30.0%
AATTTGAGAGCCAATCAAAA+TGG - chr8_1:9364699-9364718 None:intergenic 30.0%
!! TTTTGATTGGCTCTCAAATT+CGG + chr8_1:9364699-9364718 Msa1177030:intron 30.0%
! ATCTATGATGGGATTTACAT+CGG + chr8_1:9364777-9364796 Msa1177030:intron 30.0%
TTCAAAAGTGAAAGCAATCT+GGG - chr8_1:9364804-9364823 None:intergenic 30.0%
TTTCAAAAGTGAAAGCAATC+TGG - chr8_1:9364805-9364824 None:intergenic 30.0%
! TGCCCATTAAAAACTACTTT+TGG + chr8_1:9364830-9364849 Msa1177030:intron 30.0%
TAACAAAGCAAATGAACCTA+TGG - chr8_1:9364988-9365007 None:intergenic 30.0%
AGATAAACATTCAACCACAA+AGG - chr8_1:9365399-9365418 None:intergenic 30.0%
ATATAGGGGTCAAATTCAAA+TGG + chr8_1:9365445-9365464 Msa1177030:intron 30.0%
ATTCAGTGCATCTAAAGATT+CGG - chr8_1:9365532-9365551 None:intergenic 30.0%
!! AAATTATGATGGATTTGACC+TGG + chr8_1:9365557-9365576 Msa1177030:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG + chr8_1:9365558-9365577 Msa1177030:intron 30.0%
!! TACTAGTTTGTTGCTCTATT+AGG + chr8_1:9365811-9365830 Msa1177030:intron 30.0%
ATGATGATATATCAACAGTG+TGG + chr8_1:9365862-9365881 Msa1177030:intron 30.0%
!! CTGTCTTATTTATAATGACC+CGG + chr8_1:9365981-9366000 Msa1177030:intron 30.0%
! TTTTCATTCTTCAACTTTCC+GGG - chr8_1:9366002-9366021 None:intergenic 30.0%
ATCATGCATTAACAATTGGA+TGG - chr8_1:9366207-9366226 None:intergenic 30.0%
GAATTATTTGATACCAAGAC+TGG + chr8_1:9366266-9366285 Msa1177030:intron 30.0%
ATTACTTGAATAGATGGAGA+AGG + chr8_1:9366382-9366401 Msa1177030:intron 30.0%
TTACTTGAATAGATGGAGAA+GGG + chr8_1:9366383-9366402 Msa1177030:intron 30.0%
TGAATCACACAACAATAATG+CGG + chr8_1:9366680-9366699 Msa1177030:intron 30.0%
TTTAGTGTCAGTAAAAGATG+AGG - chr8_1:9366715-9366734 None:intergenic 30.0%
ACTGACACTAAAGTAATTCT+TGG + chr8_1:9366723-9366742 Msa1177030:intron 30.0%
!! CGTGTTTTTATGGGTTTTTT+TGG + chr8_1:9366899-9366918 Msa1177030:intron 30.0%
AATAAGCTGATAAGAGCTTA+TGG - chr8_1:9367005-9367024 None:intergenic 30.0%
!! CTTGTTTTCATAAACTATCC+TGG - chr8_1:9367040-9367059 None:intergenic 30.0%
TTACGTTGTTTATCCAAACA+CGG + chr8_1:9367159-9367178 Msa1177030:intron 30.0%
GAAATCGGAAATGAATGAAT+TGG + chr8_1:9367328-9367347 Msa1177030:CDS 30.0%
! AGTAAGTTTTCTGTACTTAC+AGG - chr8_1:9367723-9367742 None:intergenic 30.0%
! TACTGCTAACAGTTTTCAAA+TGG + chr8_1:9367948-9367967 Msa1177030:three_prime_UTR 30.0%
!!! ATAATTAGTTTTGGCATCGA+TGG - chr8_1:9368003-9368022 None:intergenic 30.0%
ACCTTATAGTATCTGAGAAA+AGG + chr8_1:9368204-9368223 Msa1177030:three_prime_UTR 30.0%
! ACCTTTTCTCAGATACTATA+AGG - chr8_1:9368208-9368227 None:intergenic 30.0%
! GTAATAATTTTGTTCCTCCG+AGG + chr8_1:9362771-9362790 Msa1177030:five_prime_UTR 35.0%
!!! GTTCCTTATTTTCTTCGAAG+TGG + chr8_1:9362811-9362830 Msa1177030:five_prime_UTR 35.0%
AACCCACTTCGAAGAAAATA+AGG - chr8_1:9362817-9362836 None:intergenic 35.0%
! GTTGTTGTTGTGTATCTTTC+AGG + chr8_1:9362858-9362877 Msa1177030:five_prime_UTR 35.0%
ACACACATAACACAAGATCT+AGG - chr8_1:9363149-9363168 None:intergenic 35.0%
!! TATTGTACGTGACTTGTTTG+TGG + chr8_1:9363407-9363426 Msa1177030:intron 35.0%
!! ATTGTACGTGACTTGTTTGT+GGG + chr8_1:9363408-9363427 Msa1177030:intron 35.0%
!! GGAAGTATTTGACTCAATCT+TGG + chr8_1:9363958-9363977 Msa1177030:five_prime_UTR 35.0%
!! AATCTTGGTGCTTATCTCAT+GGG + chr8_1:9363973-9363992 Msa1177030:exon 35.0%
AGAAGGCCTTTCAATCTTAA+CGG - chr8_1:9364019-9364038 None:intergenic 35.0%
ACTATGCTTACAGTTGTTAC+AGG - chr8_1:9364045-9364064 None:intergenic 35.0%
AGGAAATGAAAGCAAAAGGT+TGG - chr8_1:9364205-9364224 None:intergenic 35.0%
CGTAAAAGTTGCACAAATGA+TGG + chr8_1:9364439-9364458 Msa1177030:intron 35.0%
! CACAAATGATGGTTTGTGAT+TGG + chr8_1:9364450-9364469 Msa1177030:intron 35.0%
AGATTACTGACATTGAAGCA+CGG - chr8_1:9364626-9364645 None:intergenic 35.0%
!! GAAATTTCCCCCATTTTGAT+TGG + chr8_1:9364686-9364705 Msa1177030:intron 35.0%
TTTGAGAGCCAATCAAAATG+GGG - chr8_1:9364697-9364716 None:intergenic 35.0%
! CAACTGGATTTGATAATCTG+CGG + chr8_1:9364739-9364758 Msa1177030:intron 35.0%
! AACTGGATTTGATAATCTGC+GGG + chr8_1:9364740-9364759 Msa1177030:intron 35.0%
! ACGGACTATGATATCTATGA+TGG + chr8_1:9364765-9364784 Msa1177030:intron 35.0%
CGGACTATGATATCTATGAT+GGG + chr8_1:9364766-9364785 Msa1177030:intron 35.0%
GGCTGAAAGAAACAATAAGT+TGG - chr8_1:9365087-9365106 None:intergenic 35.0%
! GAATAAAATGGTGGTGCATA+TGG - chr8_1:9365132-9365151 None:intergenic 35.0%
! CACCATTTTATTCACATGGA+GGG + chr8_1:9365139-9365158 Msa1177030:CDS 35.0%
! ACCATTTTATTCACATGGAG+GGG + chr8_1:9365140-9365159 Msa1177030:CDS 35.0%
ATGTAAACTTACGATGGCAA+CGG - chr8_1:9365181-9365200 None:intergenic 35.0%
GTGAGAATGTAAACTTACGA+TGG - chr8_1:9365187-9365206 None:intergenic 35.0%
CTTAATGTACCAAACCTTTG+TGG + chr8_1:9365382-9365401 Msa1177030:intron 35.0%
AACATTCAACCACAAAGGTT+TGG - chr8_1:9365394-9365413 None:intergenic 35.0%
!! ATTATGATGGATTTGACCTG+GGG + chr8_1:9365559-9365578 Msa1177030:intron 35.0%
ATCAGTGTTTCCAGATGATT+TGG - chr8_1:9365628-9365647 None:intergenic 35.0%
! ATAGGAAGTGCAGTTAATTC+TGG - chr8_1:9365779-9365798 None:intergenic 35.0%
TTTATCATACCAGTGGTTGT+TGG - chr8_1:9366083-9366102 None:intergenic 35.0%
ATGCAATTAACTCTCAAACG+AGG - chr8_1:9366294-9366313 None:intergenic 35.0%
TCGTTATCCACTAGTAACTA+AGG + chr8_1:9366354-9366373 Msa1177030:intron 35.0%
GAGCATATAGAAACAGCTTA+TGG + chr8_1:9366974-9366993 Msa1177030:intron 35.0%
TATAGAAACAGCTTATGGCA+TGG + chr8_1:9366979-9366998 Msa1177030:intron 35.0%
! GTGAGAACATTTTCTTTCGA+GGG - chr8_1:9367206-9367225 None:intergenic 35.0%
! TGTGAGAACATTTTCTTTCG+AGG - chr8_1:9367207-9367226 None:intergenic 35.0%
ATTTCATAGGCTACAAAGCA+TGG + chr8_1:9367428-9367447 Msa1177030:intron 35.0%
TACAAATGTCAATGTCATGC+TGG + chr8_1:9367525-9367544 Msa1177030:intron 35.0%
!!! ATTTTGACTTCAGGAAAAGC+TGG + chr8_1:9367635-9367654 Msa1177030:intron 35.0%
TGTGAGAACAAACCAAATTC+TGG + chr8_1:9367801-9367820 Msa1177030:CDS 35.0%
TTGAAAACCAGTATTTGCAC+TGG + chr8_1:9367881-9367900 Msa1177030:exon 35.0%
! GCTAACAGTTTTCAAATGGA+TGG + chr8_1:9367952-9367971 Msa1177030:three_prime_UTR 35.0%
! GGATGGATCAGTTGAATTTT+AGG + chr8_1:9367969-9367988 Msa1177030:three_prime_UTR 35.0%
! ACTTTAGAAAGGGTTGTGAT+TGG + chr8_1:9368133-9368152 Msa1177030:three_prime_UTR 35.0%
AAAAAAACAGCAATCCTCGG+AGG - chr8_1:9362788-9362807 None:intergenic 40.0%
!! TTGTACGTGACTTGTTTGTG+GGG + chr8_1:9363409-9363428 Msa1177030:intron 40.0%
!! CAATCTTGGTGCTTATCTCA+TGG + chr8_1:9363972-9363991 Msa1177030:exon 40.0%
ACAGTTGTTACAGGTGAAGA+AGG - chr8_1:9364036-9364055 None:intergenic 40.0%
ATGTTCACGTCTATCCTGAT+TGG + chr8_1:9364163-9364182 Msa1177030:CDS 40.0%
TGTTCACGTCTATCCTGATT+GGG + chr8_1:9364164-9364183 Msa1177030:CDS 40.0%
CAAAGCAATTACACGTGAAC+CGG - chr8_1:9364256-9364275 None:intergenic 40.0%
TTGAGAGCCAATCAAAATGG+GGG - chr8_1:9364696-9364715 None:intergenic 40.0%
! ACTGGATTTGATAATCTGCG+GGG + chr8_1:9364741-9364760 Msa1177030:intron 40.0%
! ATTTGATAATCTGCGGGGAA+CGG + chr8_1:9364746-9364765 Msa1177030:intron 40.0%
ATTATTCATCCCTTCGAGCA+AGG - chr8_1:9365061-9365080 None:intergenic 40.0%
AGCCTATGATGCATCCATAT+GGG + chr8_1:9365103-9365122 Msa1177030:intron 40.0%
! TAAAATGGTGGTGCATATGG+CGG - chr8_1:9365129-9365148 None:intergenic 40.0%
! GCACCACCATTTTATTCACA+TGG + chr8_1:9365135-9365154 Msa1177030:CDS 40.0%
CCTCCATGTGAATAAAATGG+TGG - chr8_1:9365141-9365160 None:intergenic 40.0%
! CCACCATTTTATTCACATGG+AGG + chr8_1:9365138-9365157 Msa1177030:CDS 40.0%
ACCCCTCCATGTGAATAAAA+TGG - chr8_1:9365144-9365163 None:intergenic 40.0%
GGGTCAAATTCAAATGGTCA+AGG + chr8_1:9365451-9365470 Msa1177030:CDS 40.0%
AAACTTACAGCTGGTGAAGA+TGG - chr8_1:9365481-9365500 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG + chr8_1:9365560-9365579 Msa1177030:intron 40.0%
!! GTGTTTCCAGATGATTTGGT+TGG - chr8_1:9365624-9365643 None:intergenic 40.0%
ATCATCTGGAAACACTGATC+AGG + chr8_1:9365629-9365648 Msa1177030:CDS 40.0%
TCATCTGGAAACACTGATCA+GGG + chr8_1:9365630-9365649 Msa1177030:CDS 40.0%
CTTGCAATGTCAATAGGCAA+TGG + chr8_1:9365684-9365703 Msa1177030:CDS 40.0%
! ATCACGGAGGTTTGTTCTAT+AGG + chr8_1:9365746-9365765 Msa1177030:intron 40.0%
CTAGTAGAGCAAGGAAACAT+AGG - chr8_1:9365797-9365816 None:intergenic 40.0%
AGCAACAAACTAGTAGAGCA+AGG - chr8_1:9365806-9365825 None:intergenic 40.0%
TATCAACAGTGTGGATACTG+AGG + chr8_1:9365871-9365890 Msa1177030:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG + chr8_1:9365872-9365891 Msa1177030:intron 40.0%
! CATTGGTCTGTGCATAACAT+TGG - chr8_1:9366031-9366050 None:intergenic 40.0%
CAATGTTATGCACAGACCAA+TGG + chr8_1:9366029-9366048 Msa1177030:intron 40.0%
! GCTTCTTTTCCTTGTTCCAT+TGG - chr8_1:9366048-9366067 None:intergenic 40.0%
ATGGAACAAGGAAAAGAAGC+CGG + chr8_1:9366048-9366067 Msa1177030:CDS 40.0%
TCATGTCATGACTGTAACCA+TGG + chr8_1:9366142-9366161 Msa1177030:intron 40.0%
!! TCAATGGATTGTTGACACCA+TGG - chr8_1:9366162-9366181 None:intergenic 40.0%
! GATAACTGACACCGTCTTTT+TGG - chr8_1:9366455-9366474 None:intergenic 40.0%
AACCAGTGCTGCAGAAAAAA+TGG + chr8_1:9366477-9366496 Msa1177030:CDS 40.0%
!!! AACCATTTTTTCTGCAGCAC+TGG - chr8_1:9366482-9366501 None:intergenic 40.0%
AGTGCTGCAGAAAAAATGGT+TGG + chr8_1:9366481-9366500 Msa1177030:CDS 40.0%
! GTCATAGCTGAAGAAAGTAC+AGG - chr8_1:9366508-9366527 None:intergenic 40.0%
GTCAGTAAAAGATGAGGATG+AGG - chr8_1:9366709-9366728 None:intergenic 40.0%
CTTATTTCCATAAGCTCACC+AGG + chr8_1:9367019-9367038 Msa1177030:intron 40.0%
AAACTATCCTGGTGAGCTTA+TGG - chr8_1:9367029-9367048 None:intergenic 40.0%
! CATTTTCTTTCGAGGGCTAT+AGG - chr8_1:9367199-9367218 None:intergenic 40.0%
CGTTCTTATCTCCTCTATAC+AGG + chr8_1:9367247-9367266 Msa1177030:intron 40.0%
!! TGCATTGACTGCTGAGAATT+TGG + chr8_1:9367301-9367320 Msa1177030:CDS 40.0%
! TGAGAATTTGGCGCTGAAAT+CGG + chr8_1:9367313-9367332 Msa1177030:CDS 40.0%
AAAGCTGGAAAACACTCAAC+TGG + chr8_1:9367650-9367669 Msa1177030:CDS 40.0%
AAGCTGGAAAACACTCAACT+GGG + chr8_1:9367651-9367670 Msa1177030:CDS 40.0%
TGCAGCTCTATCATCAGAAT+TGG - chr8_1:9367763-9367782 None:intergenic 40.0%
AAATCCTAGAGCTAATGCTG+TGG + chr8_1:9367851-9367870 Msa1177030:CDS 40.0%
CAACAAACCAGTGCAAATAC+TGG - chr8_1:9367891-9367910 None:intergenic 40.0%
CACATGTCAGGCGTACATTT+GGG - chr8_1:9363696-9363715 None:intergenic 45.0%
ACACATGTCAGGCGTACATT+TGG - chr8_1:9363697-9363716 None:intergenic 45.0%
ATCAGCCATCAACACATGTC+AGG - chr8_1:9363708-9363727 None:intergenic 45.0%
ATGAAGCAGCGACACAGATA+TGG - chr8_1:9363808-9363827 None:intergenic 45.0%
TTATCTCATGGGAAACAGCG+AGG + chr8_1:9363984-9364003 Msa1177030:exon 45.0%
GATAGACGTGAACATTCGAC+GGG - chr8_1:9364158-9364177 None:intergenic 45.0%
GGATAGACGTGAACATTCGA+CGG - chr8_1:9364159-9364178 None:intergenic 45.0%
!! CAAAAGGTTGGTAACCTGCA+TGG - chr8_1:9364193-9364212 None:intergenic 45.0%
CGATGAAGACAACTCCACAT+TGG - chr8_1:9364591-9364610 None:intergenic 45.0%
ATAGTGTCGCAACTTGCAAC+TGG + chr8_1:9364723-9364742 Msa1177030:intron 45.0%
! GCAGCTGAGTTGAAATATGG+TGG - chr8_1:9364911-9364930 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG - chr8_1:9364914-9364933 None:intergenic 45.0%
TTCGAGCAAGGATGTACACA+AGG - chr8_1:9365049-9365068 None:intergenic 45.0%
TTGTGTACATCCTTGCTCGA+AGG + chr8_1:9365048-9365067 Msa1177030:intron 45.0%
TGTGTACATCCTTGCTCGAA+GGG + chr8_1:9365049-9365068 Msa1177030:intron 45.0%
CAGCCTATGATGCATCCATA+TGG + chr8_1:9365102-9365121 Msa1177030:intron 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG - chr8_1:9365606-9365625 None:intergenic 45.0%
GAGACACCAACCAAATCATC+TGG + chr8_1:9365615-9365634 Msa1177030:CDS 45.0%
! GATGGGCTTGCAATGTCAAT+AGG + chr8_1:9365678-9365697 Msa1177030:CDS 45.0%
GTTGCTCTATTAGGTTCGTG+TGG + chr8_1:9365820-9365839 Msa1177030:intron 45.0%
CTACAGGGGTGAGAAATTTC+TGG + chr8_1:9365921-9365940 Msa1177030:intron 45.0%
ATGCACAGACCAATGGAACA+AGG + chr8_1:9366036-9366055 Msa1177030:intron 45.0%
TGGAACAAGGAAAAGAAGCC+GGG + chr8_1:9366049-9366068 Msa1177030:CDS 45.0%
TTTGGAAGCAGCAGTCTCTT+TGG - chr8_1:9366437-9366456 None:intergenic 45.0%
! GACTGCTGCTTCCAAAAAGA+CGG + chr8_1:9366441-9366460 Msa1177030:CDS 45.0%
TTCAGCTATGACCACATCAC+TGG + chr8_1:9366516-9366535 Msa1177030:CDS 45.0%
ATCTTACAGTACCTGCATCC+AGG - chr8_1:9366608-9366627 None:intergenic 45.0%
TTCAGCTCACGCTCATTCTA+AGG - chr8_1:9366757-9366776 None:intergenic 45.0%
GTGAATCTGCTAGAAGATCC+AGG + chr8_1:9366803-9366822 Msa1177030:CDS 45.0%
GGCTATAGGTACATGCATCA+AGG - chr8_1:9367185-9367204 None:intergenic 45.0%
TTCTGATGATAGAGCTGCAG+AGG + chr8_1:9367764-9367783 Msa1177030:CDS 45.0%
AGAGCTGCAGAGGAAGAAAA+TGG + chr8_1:9367774-9367793 Msa1177030:CDS 45.0%
GTACGCCTGACATGTGTTGA+TGG + chr8_1:9363700-9363719 Msa1177030:intron 50.0%
!! ATTCGACGGGTTGGCTTGAT+TGG - chr8_1:9364145-9364164 None:intergenic 50.0%
ATGCTCCTCACCCATACATG+TGG + chr8_1:9364942-9364961 Msa1177030:CDS 50.0%
TGCTCCTCACCCATACATGT+GGG + chr8_1:9364943-9364962 Msa1177030:CDS 50.0%
! AACCTATGGAGCACTACCTG+TGG - chr8_1:9364974-9364993 None:intergenic 50.0%
GGCCCATATGGATGCATCAT+AGG - chr8_1:9365108-9365127 None:intergenic 50.0%
AAACTTACGATGGCAACGGC+AGG - chr8_1:9365177-9365196 None:intergenic 50.0%
TGACCTGGGGGAAACTATTC+AGG + chr8_1:9365572-9365591 Msa1177030:intron 50.0%
TGGGGGAAACTATTCAGGCT+GGG + chr8_1:9365577-9365596 Msa1177030:intron 50.0%
GAACAAACCTCCGTGATAGC+CGG - chr8_1:9365743-9365762 None:intergenic 50.0%
GCTCTATTAGGTTCGTGTGG+TGG + chr8_1:9365823-9365842 Msa1177030:intron 50.0%
GAAGCGATGGCAACACTACA+GGG + chr8_1:9365906-9365925 Msa1177030:CDS 50.0%
AAGCGATGGCAACACTACAG+GGG + chr8_1:9365907-9365926 Msa1177030:CDS 50.0%
ACAAGGAAAAGAAGCCGGGA+TGG + chr8_1:9366053-9366072 Msa1177030:CDS 50.0%
CAAGGAAAAGAAGCCGGGAT+GGG + chr8_1:9366054-9366073 Msa1177030:CDS 50.0%
TGACCACATCACTGGAACTG+AGG + chr8_1:9366524-9366543 Msa1177030:CDS 50.0%
GTTCCTCAGTTCCAGTGATG+TGG - chr8_1:9366530-9366549 None:intergenic 50.0%
CACTGGTGGAAATAGGCGAA+GGG - chr8_1:9366552-9366571 None:intergenic 50.0%
!! TGTGGAGCACTGGTGGAAAT+AGG - chr8_1:9366559-9366578 None:intergenic 50.0%
GGCAAAACTCCACAAGGTTG+TGG - chr8_1:9366577-9366596 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG - chr8_1:9366583-9366602 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAACC+TGG + chr8_1:9366587-9366606 Msa1177030:CDS 50.0%
AGTACCTGCATCCAGGTTTC+AGG - chr8_1:9366601-9366620 None:intergenic 50.0%
CTGCTAGAAGATCCAGGCTT+AGG + chr8_1:9366809-9366828 Msa1177030:CDS 50.0%
AAGATCCAGGCTTAGGAAGC+AGG + chr8_1:9366816-9366835 Msa1177030:CDS 50.0%
TCATACCTGCTTCCTAAGCC+TGG - chr8_1:9366824-9366843 None:intergenic 50.0%
ACATGCATCAAGGCCGTGTT+TGG - chr8_1:9367175-9367194 None:intergenic 50.0%
TATCTCCTCTATACAGGCCG+AGG + chr8_1:9367253-9367272 Msa1177030:intron 50.0%
TCGTGCCAATTCTTCAGCCT+CGG - chr8_1:9367273-9367292 None:intergenic 50.0%
CAAAGCATGGACACAGACAC+TGG + chr8_1:9367441-9367460 Msa1177030:intron 50.0%
GCAGCGACGCTTCATATTGA+AGG - chr8_1:9367572-9367591 None:intergenic 50.0%
CGCAGCTTTGCACCAGAATT+TGG - chr8_1:9367816-9367835 None:intergenic 50.0%
CTCATGGGAAACAGCGAGGA+TGG + chr8_1:9363988-9364007 Msa1177030:exon 55.0%
GACGTGAACATTCGACGGGT+TGG - chr8_1:9364154-9364173 None:intergenic 55.0%
TTCAACTCAGCTGCTGCTCC+TGG + chr8_1:9364917-9364936 Msa1177030:CDS 55.0%
! TATGGGTGAGGAGCATGACC+AGG - chr8_1:9364938-9364957 None:intergenic 55.0%
GCTCCTCACCCATACATGTG+GGG + chr8_1:9364944-9364963 Msa1177030:CDS 55.0%
GTGGTGGTCCCCACATGTAT+GGG - chr8_1:9364955-9364974 None:intergenic 55.0%
TGTGGTGGTCCCCACATGTA+TGG - chr8_1:9364956-9364975 None:intergenic 55.0%
ATACATGTGGGGACCACCAC+AGG + chr8_1:9364955-9364974 Msa1177030:CDS 55.0%
! CTATGGAGCACTACCTGTGG+TGG - chr8_1:9364971-9364990 None:intergenic 55.0%
CACCACAGGTAGTGCTCCAT+AGG + chr8_1:9364969-9364988 Msa1177030:intron 55.0%
CAGCCTGAATAGTTTCCCCC+AGG - chr8_1:9365578-9365597 None:intergenic 55.0%
CTGGGGGAAACTATTCAGGC+TGG + chr8_1:9365576-9365595 Msa1177030:intron 55.0%
! AATGCTGACAGTGCTGAGCG+TGG + chr8_1:9365708-9365727 Msa1177030:CDS 55.0%
! ATGCTGACAGTGCTGAGCGT+GGG + chr8_1:9365709-9365728 Msa1177030:CDS 55.0%
GATACTGAGGGTTCCAGCGA+TGG + chr8_1:9365884-9365903 Msa1177030:CDS 55.0%
GGAAGCGATGGCAACACTAC+AGG + chr8_1:9365905-9365924 Msa1177030:CDS 55.0%
! TGGTTGTTGGTGTCCCATCC+CGG - chr8_1:9366070-9366089 None:intergenic 55.0%
GATGGGACACCAACAACCAC+TGG + chr8_1:9366071-9366090 Msa1177030:CDS 55.0%
! CTCAAACGAGGTGCCAGTCT+TGG - chr8_1:9366282-9366301 None:intergenic 55.0%
! GCACTGGTGGAAATAGGCGA+AGG - chr8_1:9366553-9366572 None:intergenic 55.0%
!! ACAAGGTTGTGGAGCACTGG+TGG - chr8_1:9366566-9366585 None:intergenic 55.0%
ACCAGTGCTCCACAACCTTG+TGG + chr8_1:9366565-9366584 Msa1177030:CDS 55.0%
TCCACAAGGTTGTGGAGCAC+TGG - chr8_1:9366569-9366588 None:intergenic 55.0%
ACCTGCATCCAGGTTTCAGG+AGG - chr8_1:9366598-9366617 None:intergenic 55.0%
AGCGTGAGCTGAAACGTGAG+AGG + chr8_1:9366764-9366783 Msa1177030:CDS 55.0%
GTGAGCTGAAACGTGAGAGG+AGG + chr8_1:9366767-9366786 Msa1177030:CDS 55.0%
TTCAGCCTCGGCCTGTATAG+AGG - chr8_1:9367261-9367280 None:intergenic 55.0%
ACAGGCCGAGGCTGAAGAAT+TGG + chr8_1:9367265-9367284 Msa1177030:intron 55.0%
! GCTGCCACAGCATTAGCTCT+AGG - chr8_1:9367858-9367877 None:intergenic 55.0%
TCCTGATTGGGCTGCCATGC+AGG + chr8_1:9364176-9364195 Msa1177030:CDS 60.0%
ACCTGCATGGCAGCCCAATC+AGG - chr8_1:9364180-9364199 None:intergenic 60.0%
GGTCCCCACATGTATGGGTG+AGG - chr8_1:9364950-9364969 None:intergenic 60.0%
GGTGCATATGGCGGCCCATA+TGG - chr8_1:9365120-9365139 None:intergenic 60.0%
! TGCTGACAGTGCTGAGCGTG+GGG + chr8_1:9365710-9365729 Msa1177030:CDS 60.0%
GGGCGGAAAACCGGCTATCA+CGG + chr8_1:9365730-9365749 Msa1177030:CDS 60.0%
CGGAAAACCGGCTATCACGG+AGG + chr8_1:9365733-9365752 Msa1177030:CDS 60.0%
GGTTCCAGCGATGGAAGCGA+TGG + chr8_1:9365893-9365912 Msa1177030:CDS 60.0%
GTTGCCATCGCTTCCATCGC+TGG - chr8_1:9365900-9365919 None:intergenic 60.0%
GCCTCCTGAAACCTGGATGC+AGG + chr8_1:9366594-9366613 Msa1177030:CDS 60.0%
! TGACAGTGCTGAGCGTGGGG+CGG + chr8_1:9365713-9365732 Msa1177030:CDS 65.0%
CTGAGCGTGGGGCGGAAAAC+CGG + chr8_1:9365721-9365740 Msa1177030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9362701 9368258 9362701 ID=Msa1177030;Name=Msa1177030
chr8_1 mRNA 9362701 9368258 9362701 ID=Msa1177030-mRNA-1;Parent=Msa1177030;Name=Msa1177030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|1|1|1|0.91|0.84|13|374|422
chr8_1 exon 9362701 9362879 9362701 ID=Msa1177030-mRNA-1:exon:3125;Parent=Msa1177030-mRNA-1
chr8_1 exon 9363938 9364053 9363938 ID=Msa1177030-mRNA-1:exon:3126;Parent=Msa1177030-mRNA-1
chr8_1 exon 9364135 9364197 9364135 ID=Msa1177030-mRNA-1:exon:3127;Parent=Msa1177030-mRNA-1
chr8_1 exon 9364881 9364976 9364881 ID=Msa1177030-mRNA-1:exon:3128;Parent=Msa1177030-mRNA-1
chr8_1 exon 9365105 9365188 9365105 ID=Msa1177030-mRNA-1:exon:3129;Parent=Msa1177030-mRNA-1
chr8_1 exon 9365451 9365492 9365451 ID=Msa1177030-mRNA-1:exon:3130;Parent=Msa1177030-mRNA-1
chr8_1 exon 9365594 9365754 9365594 ID=Msa1177030-mRNA-1:exon:3131;Parent=Msa1177030-mRNA-1
chr8_1 exon 9365880 9365928 9365880 ID=Msa1177030-mRNA-1:exon:3132;Parent=Msa1177030-mRNA-1
chr8_1 exon 9366044 9366092 9366044 ID=Msa1177030-mRNA-1:exon:3133;Parent=Msa1177030-mRNA-1
chr8_1 exon 9366395 9366615 9366395 ID=Msa1177030-mRNA-1:exon:3134;Parent=Msa1177030-mRNA-1
chr8_1 exon 9366760 9366837 9366760 ID=Msa1177030-mRNA-1:exon:3135;Parent=Msa1177030-mRNA-1
chr8_1 exon 9367269 9367394 9367269 ID=Msa1177030-mRNA-1:exon:3136;Parent=Msa1177030-mRNA-1
chr8_1 exon 9367648 9368258 9367648 ID=Msa1177030-mRNA-1:exon:3137;Parent=Msa1177030-mRNA-1
chr8_1 five_prime_UTR 9362701 9362879 9362701 ID=Msa1177030-mRNA-1:five_prime_utr;Parent=Msa1177030-mRNA-1
chr8_1 five_prime_UTR 9363938 9363990 9363938 ID=Msa1177030-mRNA-1:five_prime_utr;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9363991 9364053 9363991 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9364135 9364197 9364135 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9364881 9364976 9364881 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9365105 9365188 9365105 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9365451 9365492 9365451 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9365594 9365754 9365594 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9365880 9365928 9365880 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9366044 9366092 9366044 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9366395 9366615 9366395 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9366760 9366837 9366760 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9367269 9367394 9367269 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 CDS 9367648 9367884 9367648 ID=Msa1177030-mRNA-1:cds;Parent=Msa1177030-mRNA-1
chr8_1 three_prime_UTR 9367885 9368258 9367885 ID=Msa1177030-mRNA-1:three_prime_utr;Parent=Msa1177030-mRNA-1
Gene Sequence

>Msa1177030

ATGGGAAACAGCGAGGATGGAAAATCCGTTAAGATTGAAAGGCCTTCTTCACCTGTAACAACTGAACAGACCAATCAAGCCAACCCGTCGAATGTTCACGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCAAAGAGTCAACATTCCACCATATTTCAACTCAGCTGCTGCTCCTGGTCATGCTCCTCACCCATACATGTGGGGACCACCACAGCCTATGATGCATCCATATGGGCCGCCATATGCACCACCATTTTATTCACATGGAGGGGTTTATACTCATCCTGCCGTTGCCATCGGGTCAAATTCAAATGGTCAAGGAATTCCATCTTCACCAGCTGCTGGGACTCCTACAAGCATAGAGACACCAACCAAATCATCTGGAAACACTGATCAGGGTTTAATGAAAAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATGGCAATGCTGACAGTGCTGAGCGTGGGGCGGAAAACCGGCTATCACGGAGTGTGGATACTGAGGGTTCCAGCGATGGAAGCGATGGCAACACTACAGGGACCAATGGAACAAGGAAAAGAAGCCGGGATGGGACACCAACAACCACTGATGGAGAAGGGAAAACTGAGATGCAAGACAGTCAAGTTTCCAAAGAGACTGCTGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAAAATGGTTGGACCTGTACTTTCTTCAGCTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGCTCCACAACCTTGTGGAGTTTTGCCTCCTGAAACCTGGATGCAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGAAGCAGGCCGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCTGAGAATTTGGCGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCTGCGAAGCTGAAGATTGAAAATGCTACATTAAAGGAAAAGCTGGAAAACACTCAACTGGGACAAACAGAAGAGATAATTTTGAACAGCATTGACGAGAGGGCTACACCTGTAAGTACAGAAAACTTACTGTCAAGAGTTGATAATTCCAATTCTGATGATAGAGCTGCAGAGGAAGAAAATGGTTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCGTCAACTACTTGACACAAATCCTAGAGCTAATGCTGTGGCAGCTAGTTGA

Protein sequence

>Msa1177030

MGNSEDGKSVKIERPSSPVTTEQTNQANPSNVHVYPDWAAMQAYYGQRVNIPPYFNSAAAPGHAPHPYMWGPPQPMMHPYGPPYAPPFYSHGGVYTHPAVAIGSNSNGQGIPSSPAAGTPTSIETPTKSSGNTDQGLMKKLKGFDGLAMSIGNGNADSAERGAENRLSRSVDTEGSSDGSDGNTTGTNGTRKRSRDGTPTTTDGEGKTEMQDSQVSKETAASKKTVSVIATSAAEKMVGPVLSSAMTTSLELRNPSPISTSAPQPCGVLPPETWMQNERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTAENLALKSEMNELAENSAKLKIENATLKEKLENTQLGQTEEIILNSIDERATPVSTENLLSRVDNSNSDDRAAEEENGFCENKPNSGAKLRQLLDTNPRANAVAAS*