AlfalfaGEDB | Msa1178360

M. sativa cultivar zhongmu-4 / Msa1178360

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178360	XP_013444869.1	98.990	297	3	0	1	297	1	297	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178360	sp\|Q9M2D9\|MYB17_ARATH	62.252	302	85	9	1	297	1	278	7.84e-120	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1178360	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178360	MtrunA17_Chr8g0349261	98.990	297	3	0	1	297	1	297	0.0	610
Msa1178360	MtrunA17_Chr7g0247131	68.482	257	72	6	45	296	9	261	4.80e-116	335
Msa1178360	MtrunA17_Chr1g0203411	48.387	310	116	10	1	296	1	280	4.27e-88	265
Msa1178360	MtrunA17_Chr7g0217741	67.251	171	53	3	1	171	1	168	1.60e-78	241
Msa1178360	MtrunA17_Chr6g0453471	61.307	199	61	6	1	195	1	187	2.80e-77	239
Msa1178360	MtrunA17_Chr4g0042671	65.341	176	47	4	1	169	1	169	5.31e-76	238
Msa1178360	MtrunA17_Chr4g0039971	76.923	130	28	2	1	130	2	129	3.18e-70	221
Msa1178360	MtrunA17_Chr2g0281071	72.308	130	35	1	1	130	1	129	1.29e-68	216
Msa1178360	MtrunA17_Chr3g0115821	73.077	130	33	2	1	130	1	128	6.90e-68	215
Msa1178360	MtrunA17_Chr4g0048511	71.538	130	36	1	1	130	1	129	4.37e-67	213

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178360	AT3G61250.1	62.252	302	85	9	1	297	1	278	7.97e-121	348
Msa1178360	AT3G01140.2	65.027	183	56	3	1	177	1	181	2.56e-80	247
Msa1178360	AT5G15310.4	65.318	173	58	2	1	173	1	171	1.40e-79	241
Msa1178360	AT5G15310.1	65.318	173	58	2	1	173	1	171	1.86e-79	244
Msa1178360	AT5G15310.2	65.318	173	58	2	1	173	1	171	2.60e-79	243
Msa1178360	AT3G01140.1	63.934	183	58	3	1	177	44	224	9.16e-77	239
Msa1178360	AT3G02940.2	73.846	130	32	2	1	130	1	128	9.30e-68	214
Msa1178360	AT3G02940.1	73.846	130	32	2	1	130	1	128	2.95e-67	213
Msa1178360	AT3G02940.3	73.846	130	32	2	1	130	1	128	2.95e-67	213
Msa1178360	AT5G10280.1	53.299	197	65	4	1	176	1	191	2.97e-67	213

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Find 52 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGGTCATGGAAGC+TGG	0.495565	8_1:+11054385	Msa1178360:CDS
AAAGAAACGTCTCATATGCA+TGG	0.523969	8_1:+11056355	Msa1178360:CDS
AACAAAATGGGGTTGAAGAA+AGG	0.484655	8_1:+11054315	Msa1178360:CDS
AACTCTTACCGCAACGAAGA+AGG	0.505550	8_1:-11055313	None:intergenic
AAGAAACGTCTCATATGCAT+GGG	0.571800	8_1:+11056356	Msa1178360:CDS
AAGATATGGAACTCTGAAGT+TGG	0.497165	8_1:+11056587	Msa1178360:CDS
AAGCTCATATCATTGTTAGA+AGG	0.437167	8_1:-11056875	None:intergenic
AAGGGACCGCGTTTAATATC+AGG	0.376248	8_1:-11055365	None:intergenic
AAGTAATGTGATGAGGCTAT+TGG	0.582396	8_1:-11056401	None:intergenic
AATATCAGGTCTTAGGTAGT+TGG	0.437328	8_1:-11055351	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAACAGCTTATAGCTAA+TGG	+	chr8_1:11054618-11054637	Msa1178360:intron	30.0%
AGAGAAAGTTCCAATCTTTA+TGG	+	chr8_1:11054943-11054962	Msa1178360:intron	30.0%
ACAAACACAACCATAAAGAT+TGG	-	chr8_1:11054956-11054975	None:intergenic	30.0%
AAGGGAAAAATTGAAGTAGA+AGG	+	chr8_1:11055116-11055135	Msa1178360:intron	30.0%
AGATAACATACTGCTTGTAA+AGG	-	chr8_1:11055152-11055171	None:intergenic	30.0%
TAGTCAAAAGTAACAGGAAT+AGG	-	chr8_1:11055534-11055553	None:intergenic	30.0%
AAACCTATTTAGTGTCTGTT+TGG	+	chr8_1:11055557-11055576	Msa1178360:intron	30.0%
AATCCAAACAGACACTAAAT+AGG	-	chr8_1:11055563-11055582	None:intergenic	30.0%
ATTGAATGATAGAAATCAGG+TGG	+	chr8_1:11055806-11055825	Msa1178360:intron	30.0%
AGAAATCAGGTGGATATTTA+TGG	+	chr8_1:11055816-11055835	Msa1178360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	11054291	11056907	11054291	ID=Msa1178360;Name=Msa1178360
chr8_1	mRNA	11054291	11056907	11054291	ID=Msa1178360-mRNA-1;Parent=Msa1178360;Name=Msa1178360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|1\|0.33\|1\|1\|1\|3\|0\|297
chr8_1	exon	11054291	11054429	11054291	ID=Msa1178360-mRNA-1:exon:3868;Parent=Msa1178360-mRNA-1
chr8_1	exon	11055312	11055441	11055312	ID=Msa1178360-mRNA-1:exon:3869;Parent=Msa1178360-mRNA-1
chr8_1	exon	11056283	11056907	11056283	ID=Msa1178360-mRNA-1:exon:3870;Parent=Msa1178360-mRNA-1
chr8_1	CDS	11054291	11054429	11054291	ID=Msa1178360-mRNA-1:cds;Parent=Msa1178360-mRNA-1
chr8_1	CDS	11055312	11055441	11055312	ID=Msa1178360-mRNA-1:cds;Parent=Msa1178360-mRNA-1
chr8_1	CDS	11056283	11056907	11056283	ID=Msa1178360-mRNA-1:cds;Parent=Msa1178360-mRNA-1

Gene Sequence

>Msa1178360

ATGGGAAGAACACCTTGTTGTGATAACAAAATGGGGTTGAAGAAAGGTCCATGGACTAGTGAAGAAGATGAAGTTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCTTCGTTGCGGTAAGAGTTGCCGGCTAAGATGGACCAACTACCTAAGACCTGATATTAAACGCGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCTATACTTGGAAACAGGTGGGCTTCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAGATCAAAAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACCCATGAACCAATAGCCTCATCACATTACTTCCCAATTTCCAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACACATCTTTAATCAACAATAACAACATTCCTTCTTTGGCAAGCAACAAAACTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCACCGGTCGCAAATCAGACGACGAAGACGATGATGATAAAACTAAGTGCCAGAGTTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAACAACAAATGTGGATCAGTTTCTGTTACTACTACAACAAGCAATGTGATGGAGGATTTTGAATGGAGAAATTACAAGTCATTTGATGTAGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCACTGCAACTCTTGTTGGATTTTCCTTCTAACAATGATATGAGCTTCTTAGAATGA

Protein sequence

>Msa1178360

MGRTPCCDNKMGLKKGPWTSEEDEVLVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWASIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYFPISKSNSSIATRHMAQWESARLEAEARLSKDTSLINNNNIPSLASNKTDSDYFLKIWNSEVGQSFRTGRKSDDEDDDDKTKCQSSMSQEGSSCNNNNKCGSVSVTTTTSNVMEDFEWRNYKSFDVGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE*