AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178360 MtrunA17_Chr8g0349261 98.990 297 3 0 1 297 1 297 0.0 610
Msa1178360 MtrunA17_Chr7g0247131 68.482 257 72 6 45 296 9 261 4.80e-116 335
Msa1178360 MtrunA17_Chr1g0203411 48.387 310 116 10 1 296 1 280 4.27e-88 265
Msa1178360 MtrunA17_Chr7g0217741 67.251 171 53 3 1 171 1 168 1.60e-78 241
Msa1178360 MtrunA17_Chr6g0453471 61.307 199 61 6 1 195 1 187 2.80e-77 239
Msa1178360 MtrunA17_Chr4g0042671 65.341 176 47 4 1 169 1 169 5.31e-76 238
Msa1178360 MtrunA17_Chr4g0039971 76.923 130 28 2 1 130 2 129 3.18e-70 221
Msa1178360 MtrunA17_Chr2g0281071 72.308 130 35 1 1 130 1 129 1.29e-68 216
Msa1178360 MtrunA17_Chr3g0115821 73.077 130 33 2 1 130 1 128 6.90e-68 215
Msa1178360 MtrunA17_Chr4g0048511 71.538 130 36 1 1 130 1 129 4.37e-67 213
Msa1178360 MtrunA17_Chr5g0434571 73.134 134 34 2 1 134 37 168 4.11e-65 208
Msa1178360 MtrunA17_Chr4g0057031 73.282 131 33 2 1 131 1 129 1.83e-64 204
Msa1178360 MtrunA17_Chr2g0323411 67.832 143 43 3 1 143 1 140 1.90e-64 205
Msa1178360 MtrunA17_Chr5g0410961 68.462 130 39 2 1 130 1 128 7.03e-64 204
Msa1178360 MtrunA17_Chr5g0395281 70.769 130 36 2 1 130 1 128 9.68e-64 203
Msa1178360 MtrunA17_Chr3g0110351 70.896 134 37 2 1 134 1 132 2.00e-63 202
Msa1178360 MtrunA17_Chr7g0228891 70.992 131 36 2 1 131 1 129 1.98e-62 198
Msa1178360 MtrunA17_Chr4g0037141 51.323 189 85 3 1 189 1 182 8.76e-62 197
Msa1178360 MtrunA17_Chr1g0187761 72.881 118 30 2 1 118 1 116 2.55e-61 195
Msa1178360 MtrunA17_Chr3g0121241 68.504 127 38 2 5 131 35 159 5.54e-61 196
Msa1178360 MtrunA17_Chr7g0261281 72.881 118 30 2 1 118 1 116 2.31e-60 193
Msa1178360 MtrunA17_Chr1g0193371 68.182 132 40 2 1 132 1 130 2.42e-60 196
Msa1178360 MtrunA17_Chr3g0131121 59.603 151 55 3 1 147 1 149 3.13e-59 191
Msa1178360 MtrunA17_Chr8g0385321 64.662 133 45 2 1 133 1 131 3.27e-59 191
Msa1178360 MtrunA17_Chr1g0167691 70.588 119 33 2 1 119 1 117 1.73e-58 187
Msa1178360 MtrunA17_Chr1g0167661 69.748 119 34 2 1 119 1 117 2.48e-58 187
Msa1178360 MtrunA17_Chr5g0417821 57.792 154 59 2 11 164 5 152 5.49e-58 187
Msa1178360 MtrunA17_Chr4g0068061 66.116 121 39 2 1 121 1 119 2.00e-57 187
Msa1178360 MtrunA17_Chr7g0270891 66.667 132 42 2 1 132 1 130 2.33e-57 188
Msa1178360 MtrunA17_Chr1g0193801 66.667 132 42 2 1 132 1 130 2.46e-57 189
Msa1178360 MtrunA17_Chr7g0275911 69.492 118 34 2 1 118 1 116 4.60e-57 184
Msa1178360 MtrunA17_Chr7g0274581 63.559 118 41 2 1 118 1 116 7.00e-57 182
Msa1178360 MtrunA17_Chr3g0117091 52.062 194 76 4 1 181 1 190 3.52e-56 184
Msa1178360 MtrunA17_Chr2g0309911 63.077 130 46 2 6 135 5 132 8.01e-56 182
Msa1178360 MtrunA17_Chr4g0058631 62.963 135 48 2 1 135 1 133 1.31e-55 184
Msa1178360 MtrunA17_Chr7g0271241 66.667 132 42 2 1 132 1 130 2.37e-55 183
Msa1178360 MtrunA17_Chr1g0211161 64.122 131 46 1 1 131 1 130 2.48e-55 179
Msa1178360 MtrunA17_Chr6g0452271 59.848 132 51 2 1 132 1 130 2.91e-54 179
Msa1178360 MtrunA17_Chr5g0435101 62.205 127 46 2 3 129 2 126 3.22e-54 175
Msa1178360 MtrunA17_Chr8g0346561 66.949 118 37 2 1 118 1 116 4.54e-54 178
Msa1178360 MtrunA17_Chr2g0330041 50.909 165 70 3 1 156 1 163 1.03e-53 180
Msa1178360 MtrunA17_Chr4g0060721 66.102 118 38 2 1 118 2 117 1.26e-53 177
Msa1178360 MtrunA17_Chr7g0217221 46.188 223 87 9 1 210 1 203 2.97e-53 175
Msa1178360 MtrunA17_Chr3g0092401 47.826 207 98 6 1 204 2 201 1.17e-52 174
Msa1178360 MtrunA17_Chr7g0254411 63.780 127 42 3 1 125 1 125 1.22e-52 175
Msa1178360 MtrunA17_Chr3g0103281 55.152 165 62 6 1 165 1 153 1.36e-52 175
Msa1178360 MtrunA17_Chr4g0044421 60.317 126 49 1 3 128 2 126 2.86e-52 169
Msa1178360 MtrunA17_Chr1g0194951 62.308 130 47 2 1 130 1 128 3.72e-52 175
Msa1178360 MtrunA17_Chr4g0022931 63.559 118 42 1 1 118 1 117 6.61e-52 171
Msa1178360 MtrunA17_Chr4g0022901 63.866 119 42 1 1 119 1 118 1.17e-51 171
Msa1178360 MtrunA17_Chr8g0342541 60.800 125 47 2 1 125 1 123 7.86e-51 171
Msa1178360 MtrunA17_Chr8g0342521 60.800 125 47 2 1 125 1 123 3.85e-50 169
Msa1178360 MtrunA17_Chr4g0070611 64.407 118 40 2 1 118 1 116 6.20e-50 167
Msa1178360 MtrunA17_Chr4g0070641 64.407 118 40 2 1 118 1 116 8.69e-50 162
Msa1178360 MtrunA17_Chr4g0022911 60.504 119 46 1 1 119 1 118 1.94e-49 166
Msa1178360 MtrunA17_Chr4g0028311 57.364 129 54 1 1 129 1 128 7.07e-49 165
Msa1178360 MtrunA17_Chr2g0311221 66.071 112 36 2 2 113 4 113 8.37e-49 165
Msa1178360 MtrunA17_Chr6g0453211 65.487 113 37 2 1 113 1 111 8.92e-49 164
Msa1178360 MtrunA17_Chr7g0269831 67.797 118 36 2 1 118 1 116 3.57e-48 164
Msa1178360 MtrunA17_Chr8g0387421 61.864 118 43 2 1 118 1 116 4.18e-48 163
Msa1178360 MtrunA17_Chr1g0151941 57.983 119 49 1 1 119 1 118 5.69e-48 160
Msa1178360 MtrunA17_Chr5g0400821 59.664 119 47 1 1 119 1 118 1.94e-47 161
Msa1178360 MtrunA17_Chr7g0264641 58.678 121 49 1 1 121 1 120 2.09e-47 160
Msa1178360 MtrunA17_Chr2g0323351 63.025 119 42 2 1 119 1 117 2.60e-47 159
Msa1178360 MtrunA17_Chr3g0135311 59.664 119 47 1 1 119 1 118 2.61e-47 162
Msa1178360 MtrunA17_Chr2g0327351 58.156 141 53 3 1 138 1 138 6.82e-47 160
Msa1178360 MtrunA17_Chr8g0342481 60.504 119 46 1 1 119 1 118 7.03e-47 162
Msa1178360 MtrunA17_Chr5g0397231 64.286 112 38 2 1 112 1 110 8.31e-47 160
Msa1178360 MtrunA17_Chr1g0152011 57.983 119 49 1 1 119 1 118 3.39e-46 159
Msa1178360 MtrunA17_Chr8g0354661 66.667 105 34 1 13 117 37 140 9.06e-46 162
Msa1178360 MtrunA17_Chr6g0487491 55.906 127 47 2 1 119 1 126 1.03e-45 155
Msa1178360 MtrunA17_Chr4g0032401 60.714 112 43 1 13 124 17 127 2.42e-45 156
Msa1178360 MtrunA17_Chr3g0088461 61.017 118 45 1 1 118 10 126 1.19e-44 154
Msa1178360 MtrunA17_Chr4g0022891 60.000 115 44 2 1 115 1 113 2.03e-44 151
Msa1178360 MtrunA17_Chr2g0328771 62.264 106 39 1 13 118 20 124 2.95e-44 153
Msa1178360 MtrunA17_Chr4g0072751 60.714 112 43 1 1 112 1 111 3.62e-44 153
Msa1178360 MtrunA17_Chr4g0022881 56.667 120 50 2 1 120 1 118 7.52e-44 149
Msa1178360 MtrunA17_Chr6g0450101 57.983 119 48 2 1 118 1 118 2.22e-43 147
Msa1178360 MtrunA17_Chr7g0228231 63.208 106 38 1 13 118 14 118 2.45e-43 147
Msa1178360 MtrunA17_Chr1g0168661 60.577 104 40 1 14 117 22 124 7.64e-43 147
Msa1178360 MtrunA17_Chr1g0186061 54.839 124 51 2 14 137 21 139 8.11e-43 147
Msa1178360 MtrunA17_Chr4g0054391 57.658 111 46 1 1 111 1 110 2.09e-42 147
Msa1178360 MtrunA17_Chr3g0080861 61.905 105 39 1 13 117 37 140 4.62e-42 151
Msa1178360 MtrunA17_Chr1g0203441 52.713 129 59 2 1 129 1 127 1.47e-41 144
Msa1178360 MtrunA17_Chr4g0042611 70.000 90 25 2 1 90 1 88 2.83e-41 138
Msa1178360 MtrunA17_Chr1g0154031 61.905 105 39 1 13 117 76 179 3.15e-41 147
Msa1178360 MtrunA17_Chr3g0099131 60.000 105 41 1 13 117 41 144 6.00e-41 149
Msa1178360 MtrunA17_Chr1g0180391 60.377 106 41 1 13 118 19 123 6.48e-41 142
Msa1178360 MtrunA17_Chr1g0209661 56.250 112 48 1 13 124 27 137 1.11e-40 143
Msa1178360 MtrunA17_Chr2g0294811 55.738 122 48 3 1 118 1 120 3.70e-40 136
Msa1178360 MtrunA17_Chr2g0322521 60.360 111 43 1 7 117 23 132 1.04e-39 143
Msa1178360 MtrunA17_Chr1g0194301 47.015 134 70 1 8 141 28 160 4.70e-39 138
Msa1178360 MtrunA17_Chr6g0470971 53.175 126 57 2 10 134 11 135 2.71e-38 136
Msa1178360 MtrunA17_Chr1g0194291 56.364 110 47 1 8 117 16 124 3.26e-38 135
Msa1178360 MtrunA17_Chr4g0055981 54.237 118 53 1 10 127 52 168 3.30e-38 134
Msa1178360 MtrunA17_Chr7g0240821 56.075 107 46 1 18 124 6 111 2.75e-37 132
Msa1178360 MtrunA17_Chr2g0327821 56.190 105 45 1 13 117 6 109 5.23e-37 132
Msa1178360 MtrunA17_Chr8g0343831 55.660 106 46 1 13 118 8 112 5.30e-37 132
Msa1178360 MtrunA17_Chr7g0220341 53.509 114 50 2 8 119 20 132 1.59e-36 131
Msa1178360 MtrunA17_Chr5g0434931 53.704 108 49 1 12 119 34 140 2.83e-36 131
Msa1178360 MtrunA17_Chr4g0030881 54.054 111 43 2 14 117 8 117 1.28e-35 129
Msa1178360 MtrunA17_Chr5g0434831 54.630 108 48 1 12 119 6 112 1.36e-35 127
Msa1178360 MtrunA17_Chr5g0434911 51.852 108 51 1 12 119 20 126 4.42e-35 127
Msa1178360 MtrunA17_Chr2g0293911 56.881 109 46 1 8 116 19 126 3.09e-34 127
Msa1178360 MtrunA17_Chr5g0440781 48.673 113 55 3 14 125 13 123 5.67e-34 122
Msa1178360 MtrunA17_Chr7g0228991 51.786 112 53 1 8 119 24 134 6.06e-34 125
Msa1178360 MtrunA17_Chr5g0395221 67.470 83 26 1 8 90 7 88 1.01e-33 118
Msa1178360 MtrunA17_Chr4g0068921 55.963 109 47 1 8 116 19 126 1.59e-33 121
Msa1178360 MtrunA17_Chr1g0192411 47.200 125 59 2 11 129 10 133 2.06e-33 126
Msa1178360 MtrunA17_Chr8g0360111 53.271 107 49 1 8 114 20 125 3.60e-33 122
Msa1178360 MtrunA17_Chr8g0342511 60.674 89 33 2 1 89 1 87 4.28e-33 117
Msa1178360 MtrunA17_Chr5g0440761 48.673 113 55 3 14 125 13 123 5.08e-33 122
Msa1178360 MtrunA17_Chr5g0434841 52.778 108 50 1 12 119 19 125 5.36e-33 123
Msa1178360 MtrunA17_Chr5g0441141 48.673 113 55 3 14 125 13 123 5.98e-33 122
Msa1178360 MtrunA17_Chr8g0342531 56.250 96 41 1 3 98 2 96 1.36e-32 118
Msa1178360 MtrunA17_Chr2g0323321 58.511 94 36 2 1 94 1 91 2.27e-32 115
Msa1178360 MtrunA17_Chr5g0441131 48.673 113 55 3 14 125 10 120 1.58e-31 115
Msa1178360 MtrunA17_Chr8g0334881 54.286 105 46 2 13 116 10 113 4.89e-31 118
Msa1178360 MtrunA17_Chr8g0342461 56.044 91 39 1 1 91 1 90 5.50e-31 113
Msa1178360 MtrunA17_Chr8g0342471 56.044 91 39 1 1 91 1 90 9.06e-31 112
Msa1178360 MtrunA17_Chr3g0099141 54.762 84 37 1 13 96 40 122 2.37e-30 111
Msa1178360 MtrunA17_Chr4g0008551 51.887 106 47 3 15 119 38 140 7.50e-30 115
Msa1178360 MtrunA17_Chr4g0013361 52.381 105 48 2 13 116 10 113 1.94e-29 113
Msa1178360 MtrunA17_Chr3g0133601 46.957 115 57 3 9 122 31 142 2.75e-29 111
Msa1178360 MtrunA17_Chr6g0454921 48.276 116 56 3 10 124 10 122 3.68e-29 110
Msa1178360 MtrunA17_Chr3g0093811 56.818 88 38 0 45 132 13 100 3.76e-29 112
Msa1178360 MtrunA17_Chr5g0401731 43.382 136 69 4 10 140 10 142 5.19e-28 110
Msa1178360 MtrunA17_Chr7g0238631 46.377 138 61 4 13 149 111 236 3.75e-27 110
Msa1178360 MtrunA17_Chr5g0429661 47.748 111 56 1 1 111 108 216 4.26e-27 108
Msa1178360 MtrunA17_Chr5g0437321 50.495 101 46 3 15 114 19 116 5.33e-27 106
Msa1178360 MtrunA17_Chr4g0053431 50.485 103 49 2 15 117 5 105 4.52e-26 103
Msa1178360 MtrunA17_Chr3g0139671 42.446 139 72 5 13 146 83 218 2.08e-25 106
Msa1178360 MtrunA17_Chr6g0453751 52.128 94 37 2 12 97 19 112 3.79e-25 97.8
Msa1178360 MtrunA17_Chr6g0480581 44.800 125 61 4 15 134 4 125 4.03e-25 100
Msa1178360 MtrunA17_Chr7g0229101 60.563 71 28 0 45 115 3 73 6.88e-25 99.4
Msa1178360 MtrunA17_Chr7g0247141 79.592 49 9 1 1 49 1 48 7.44e-25 94.7
Msa1178360 MtrunA17_Chr4g0058991 49.515 103 50 1 10 112 204 304 9.20e-25 103
Msa1178360 MtrunA17_Chr7g0229131 56.000 75 33 0 45 119 3 77 1.75e-24 97.1
Msa1178360 MtrunA17_Chr1g0157731 47.664 107 52 3 13 118 89 192 1.99e-24 103
Msa1178360 MtrunA17_Chr4g0042621 58.696 92 25 4 86 169 9 95 1.03e-23 99.0
Msa1178360 MtrunA17_Chr3g0117511 47.170 106 48 4 10 112 178 278 1.66e-23 99.8
Msa1178360 MtrunA17_Chr7g0228531 33.514 185 94 6 11 190 216 376 2.49e-23 99.0
Msa1178360 MtrunA17_Chr5g0425591 48.235 85 42 2 14 97 10 93 4.19e-23 91.3
Msa1178360 MtrunA17_Chr5g0434901 59.091 66 27 0 50 115 9 74 1.80e-22 90.1
Msa1178360 MtrunA17_Chr6g0460661 43.434 99 52 3 15 112 16 111 1.61e-20 86.3
Msa1178360 MtrunA17_Chr5g0397841 47.000 100 49 3 13 111 108 204 1.68e-20 91.3
Msa1178360 MtrunA17_Chr1g0177901 50.000 78 38 1 35 112 13 89 2.90e-20 87.0
Msa1178360 MtrunA17_Chr3g0125801 47.115 104 51 3 15 117 16 116 3.07e-20 88.6
Msa1178360 MtrunA17_Chr7g0233061 44.000 100 48 2 15 112 180 273 6.95e-20 88.6
Msa1178360 MtrunA17_Chr5g0417621 44.762 105 54 3 15 118 134 235 8.11e-20 89.0
Msa1178360 MtrunA17_Chr7g0228481 30.769 182 103 7 11 190 216 376 2.22e-19 87.8
Msa1178360 MtrunA17_Chr4g0042501 44.231 104 54 3 15 117 105 205 4.11e-19 87.0
Msa1178360 MtrunA17_Chr7g0228401 48.864 88 41 3 26 112 290 374 8.54e-19 86.3
Msa1178360 MtrunA17_Chr7g0238651 39.062 128 74 3 18 142 10 136 1.81e-17 81.6
Msa1178360 MtrunA17_Chr5g0395231 66.667 51 17 0 80 130 5 55 2.07e-17 79.7
Msa1178360 MtrunA17_Chr6g0460671 38.462 104 60 3 15 117 99 199 5.36e-17 80.1
Msa1178360 MtrunA17_Chr5g0416341 41.748 103 52 4 18 117 29 126 4.20e-16 78.2
Msa1178360 MtrunA17_Chr8g0362231 40.777 103 53 4 18 117 25 122 1.98e-15 76.3
Msa1178360 MtrunA17_Chr7g0254261 41.346 104 57 3 15 117 89 189 5.08e-15 74.3
Msa1178360 MtrunA17_Chr1g0193901 51.667 60 27 2 13 71 11 69 4.27e-14 67.4
Msa1178360 MtrunA17_Chr1g0193891 51.667 60 27 2 13 71 11 69 4.27e-14 67.4
Msa1178360 MtrunA17_Chr1g0193871 51.667 60 27 2 13 71 11 69 4.27e-14 67.4
Msa1178360 MtrunA17_Chr1g0193881 51.667 60 27 2 13 71 11 69 4.27e-14 67.4
Msa1178360 MtrunA17_Chr5g0434871 52.273 44 21 0 76 119 2 45 2.53e-13 63.9
Msa1178360 MtrunA17_Chr3g0145551 68.421 38 12 0 94 131 2 39 1.76e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178360 AT3G61250.1 62.252 302 85 9 1 297 1 278 7.97e-121 348
Msa1178360 AT3G01140.2 65.027 183 56 3 1 177 1 181 2.56e-80 247
Msa1178360 AT5G15310.4 65.318 173 58 2 1 173 1 171 1.40e-79 241
Msa1178360 AT5G15310.1 65.318 173 58 2 1 173 1 171 1.86e-79 244
Msa1178360 AT5G15310.2 65.318 173 58 2 1 173 1 171 2.60e-79 243
Msa1178360 AT3G01140.1 63.934 183 58 3 1 177 44 224 9.16e-77 239
Msa1178360 AT3G02940.2 73.846 130 32 2 1 130 1 128 9.30e-68 214
Msa1178360 AT3G02940.1 73.846 130 32 2 1 130 1 128 2.95e-67 213
Msa1178360 AT3G02940.3 73.846 130 32 2 1 130 1 128 2.95e-67 213
Msa1178360 AT5G10280.1 53.299 197 65 4 1 176 1 191 2.97e-67 213
Msa1178360 AT5G16770.4 73.077 130 33 2 1 130 1 128 1.03e-66 211
Msa1178360 AT5G16770.3 73.077 130 33 2 1 130 1 128 1.03e-66 211
Msa1178360 AT1G34670.1 55.080 187 71 3 1 176 1 185 2.39e-66 212
Msa1178360 AT4G05100.1 70.000 130 38 1 1 130 1 129 3.07e-66 210
Msa1178360 AT5G16770.1 73.077 130 33 2 1 130 1 128 3.20e-66 211
Msa1178360 AT5G16770.2 73.077 130 33 2 1 130 1 128 3.20e-66 211
Msa1178360 AT4G21440.1 41.275 298 142 7 1 277 1 286 5.17e-66 210
Msa1178360 AT4G22680.1 72.519 131 34 2 1 131 1 129 2.08e-65 206
Msa1178360 AT4G12350.1 70.992 131 36 2 1 131 1 129 1.66e-64 204
Msa1178360 AT5G65230.1 70.769 130 36 2 1 130 1 128 6.46e-64 204
Msa1178360 AT4G28110.1 68.462 130 39 2 1 130 1 128 9.64e-64 202
Msa1178360 AT5G16600.1 71.970 132 35 2 1 132 1 130 3.25e-63 202
Msa1178360 AT3G13540.1 70.312 128 36 2 4 131 15 140 3.38e-63 200
Msa1178360 AT4G17785.2 67.692 130 41 1 1 130 1 129 1.14e-62 202
Msa1178360 AT4G17785.1 67.692 130 41 1 1 130 1 129 1.56e-62 202
Msa1178360 AT1G22640.1 47.534 223 106 6 1 218 1 217 2.28e-62 198
Msa1178360 AT3G23250.1 74.576 118 28 2 1 118 1 116 1.78e-61 197
Msa1178360 AT1G06180.1 72.881 118 30 2 1 118 1 116 3.77e-61 194
Msa1178360 AT2G31180.1 72.034 118 31 2 1 118 1 116 1.00e-60 194
Msa1178360 AT2G16720.1 59.864 147 57 2 1 147 1 145 2.08e-60 193
Msa1178360 AT4G09460.1 64.925 134 45 2 1 134 1 132 3.57e-60 192
Msa1178360 AT4G38620.1 66.418 134 43 2 1 134 1 132 3.66e-60 193
Msa1178360 AT1G09540.1 65.693 137 45 2 1 137 1 135 1.93e-59 194
Msa1178360 AT1G18570.1 64.925 134 46 1 1 134 1 133 2.31e-59 193
Msa1178360 AT5G62320.1 57.229 166 53 3 2 150 3 167 5.23e-59 189
Msa1178360 AT1G35515.1 63.359 131 46 2 1 131 1 129 2.29e-58 186
Msa1178360 AT5G61420.2 64.179 134 46 2 1 134 1 132 2.40e-58 191
Msa1178360 AT1G57560.1 64.394 132 45 2 1 132 1 130 2.80e-58 189
Msa1178360 AT5G14340.1 66.412 131 42 2 1 131 13 141 5.40e-58 187
Msa1178360 AT1G57560.2 64.394 132 45 2 1 132 1 130 7.55e-58 187
Msa1178360 AT5G26660.1 64.662 133 45 2 1 133 1 131 2.16e-57 188
Msa1178360 AT4G34990.1 64.885 131 44 2 1 131 1 129 3.14e-57 185
Msa1178360 AT5G07690.1 63.636 132 46 2 1 132 1 130 6.28e-57 186
Msa1178360 AT5G07700.1 61.871 139 51 2 1 139 1 137 9.95e-57 186
Msa1178360 AT5G07700.2 61.871 139 51 2 1 139 1 137 9.95e-57 186
Msa1178360 AT5G60890.1 63.433 134 47 2 1 134 1 132 1.10e-56 185
Msa1178360 AT4G01680.3 66.667 129 41 2 1 129 1 127 2.66e-56 182
Msa1178360 AT5G54230.1 70.339 118 34 1 13 130 12 128 5.11e-56 184
Msa1178360 AT1G08810.1 70.339 118 33 2 1 118 1 116 1.04e-55 182
Msa1178360 AT4G01680.1 66.667 129 41 2 1 129 1 127 1.60e-55 183
Msa1178360 AT1G16490.1 69.231 117 34 2 2 118 4 118 2.81e-55 180
Msa1178360 AT1G79180.1 70.085 117 33 2 2 118 4 118 1.07e-54 179
Msa1178360 AT1G56160.1 69.231 117 34 2 2 118 4 118 1.61e-54 179
Msa1178360 AT5G49330.1 56.757 148 61 3 1 147 1 146 2.27e-54 180
Msa1178360 AT1G74650.1 67.769 121 37 2 1 121 1 119 3.12e-54 179
Msa1178360 AT1G74430.1 64.179 134 46 2 1 134 1 132 8.25e-54 176
Msa1178360 AT3G47600.1 67.769 121 37 2 1 121 1 119 1.05e-53 178
Msa1178360 AT1G74080.1 61.832 131 48 2 1 131 1 129 1.07e-53 178
Msa1178360 AT2G47460.1 68.644 118 35 2 1 118 1 116 1.21e-53 179
Msa1178360 AT5G56110.1 59.848 132 51 2 1 132 1 130 4.81e-53 176
Msa1178360 AT5G62470.2 67.797 118 36 2 1 118 1 116 9.34e-53 176
Msa1178360 AT3G12820.1 69.231 117 34 2 3 119 5 119 1.25e-52 172
Msa1178360 AT3G62610.1 67.797 118 36 2 1 118 1 116 1.28e-52 176
Msa1178360 AT3G28910.1 67.797 118 36 2 1 118 1 116 3.22e-52 174
Msa1178360 AT4G01680.2 60.993 141 41 3 1 129 1 139 4.71e-52 174
Msa1178360 AT1G18710.1 63.359 131 46 2 1 131 1 129 8.83e-52 171
Msa1178360 AT5G62470.1 67.797 118 35 3 1 118 1 115 2.12e-51 172
Msa1178360 AT3G13890.2 63.866 119 41 2 1 119 1 117 1.16e-50 171
Msa1178360 AT3G12720.1 59.375 128 50 2 6 133 16 141 2.53e-50 169
Msa1178360 AT4G37780.1 61.345 119 45 1 1 119 1 118 8.03e-50 167
Msa1178360 AT3G28470.1 52.353 170 67 4 1 158 1 168 4.40e-49 166
Msa1178360 AT1G63910.1 61.864 118 43 2 1 118 1 116 6.92e-48 164
Msa1178360 AT1G79180.2 54.667 150 33 3 2 118 4 151 8.50e-48 162
Msa1178360 AT3G13890.1 59.375 128 41 3 1 119 1 126 1.43e-47 163
Msa1178360 AT2G36890.1 56.716 134 56 2 1 133 1 133 1.51e-47 161
Msa1178360 AT3G49690.1 60.504 119 46 1 1 119 1 118 1.99e-47 161
Msa1178360 AT2G36890.2 56.716 134 56 2 1 133 42 174 2.70e-47 162
Msa1178360 AT5G57620.1 59.664 119 47 1 1 119 1 118 6.84e-47 160
Msa1178360 AT5G23000.1 58.824 119 48 1 1 119 1 118 1.74e-46 159
Msa1178360 AT5G65790.1 58.824 119 48 1 1 119 1 118 2.22e-46 160
Msa1178360 AT2G32460.1 65.094 106 36 1 12 117 17 121 9.22e-46 161
Msa1178360 AT2G32460.2 65.094 106 36 1 12 117 5 109 9.76e-46 161
Msa1178360 AT3G08500.1 63.063 111 40 1 8 118 25 134 9.57e-45 155
Msa1178360 AT5G55020.1 61.207 116 43 2 8 123 21 134 1.86e-44 158
Msa1178360 AT5G40350.1 60.909 110 42 1 13 122 17 125 7.30e-44 149
Msa1178360 AT5G12870.1 62.385 109 40 1 13 121 18 125 1.72e-43 150
Msa1178360 AT5G14750.1 41.398 186 88 4 14 197 17 183 1.73e-43 148
Msa1178360 AT3G27810.1 61.321 106 40 1 13 118 20 124 2.96e-43 148
Msa1178360 AT3G24310.1 61.321 106 40 1 12 117 17 121 6.90e-43 148
Msa1178360 AT4G26930.1 63.462 104 37 1 13 116 19 121 1.08e-42 151
Msa1178360 AT3G01530.1 61.321 106 40 1 13 118 25 129 1.23e-42 145
Msa1178360 AT4G13480.1 62.500 104 38 1 14 117 7 109 1.43e-42 147
Msa1178360 AT5G06100.1 58.491 106 43 1 12 117 31 135 3.07e-42 151
Msa1178360 AT3G11440.2 59.048 105 42 1 13 117 41 144 8.08e-42 150
Msa1178360 AT1G25340.1 49.296 142 67 3 1 138 4 144 1.04e-41 145
Msa1178360 AT5G06100.5 58.491 106 43 1 12 117 31 135 1.14e-41 150
Msa1178360 AT5G06100.2 58.491 106 43 1 12 117 31 135 1.14e-41 150
Msa1178360 AT5G06100.3 58.491 106 43 1 12 117 31 135 1.14e-41 150
Msa1178360 AT5G06100.4 58.491 106 43 1 12 117 31 135 1.14e-41 150
Msa1178360 AT3G11440.3 59.048 105 42 1 13 117 41 144 3.30e-41 150
Msa1178360 AT3G11440.4 59.048 105 42 1 13 117 41 144 3.30e-41 150
Msa1178360 AT3G11440.1 59.048 105 42 1 13 117 41 144 3.30e-41 150
Msa1178360 AT5G40330.1 58.095 105 43 1 14 118 13 116 3.61e-41 142
Msa1178360 AT5G35550.1 56.098 123 49 2 13 135 14 131 1.11e-40 142
Msa1178360 AT3G27920.1 56.604 106 45 1 14 119 15 119 1.74e-40 140
Msa1178360 AT3G30210.1 58.095 105 43 1 12 116 26 129 2.53e-40 142
Msa1178360 AT2G26960.1 58.772 114 45 2 10 123 17 128 3.59e-40 145
Msa1178360 AT3G46130.1 59.434 106 42 1 12 117 8 112 1.34e-39 139
Msa1178360 AT1G68320.1 56.250 112 48 1 13 124 19 129 1.58e-39 140
Msa1178360 AT5G59780.3 59.615 104 41 1 14 117 9 111 3.13e-39 138
Msa1178360 AT5G26660.2 68.966 87 27 0 47 133 14 100 4.85e-39 139
Msa1178360 AT5G52600.1 47.059 136 62 2 8 134 7 141 1.58e-38 135
Msa1178360 AT3G53200.1 58.095 105 43 1 13 117 9 112 7.26e-38 134
Msa1178360 AT2G47190.1 51.754 114 54 1 4 117 11 123 1.10e-37 135
Msa1178360 AT1G25340.2 47.183 142 65 4 1 138 4 139 2.07e-37 134
Msa1178360 AT1G25340.3 47.183 142 65 4 1 138 4 139 3.19e-37 134
Msa1178360 AT1G48000.1 43.333 150 84 1 13 162 32 180 3.54e-36 130
Msa1178360 AT1G66370.1 54.701 117 47 2 1 117 1 111 7.53e-36 129
Msa1178360 AT3G06490.1 54.098 122 55 1 8 129 14 134 1.26e-35 130
Msa1178360 AT5G52260.1 57.273 110 46 1 10 119 9 117 1.60e-35 129
Msa1178360 AT3G48920.1 50.000 126 56 3 14 139 19 137 3.64e-35 128
Msa1178360 AT4G25560.1 55.660 106 46 1 14 119 11 115 6.12e-35 128
Msa1178360 AT5G49620.1 55.455 110 48 1 7 116 20 128 1.20e-32 122
Msa1178360 AT1G66380.1 58.491 106 43 1 12 117 7 111 2.05e-32 117
Msa1178360 AT3G47600.2 75.000 72 18 0 47 118 39 110 2.40e-32 122
Msa1178360 AT5G14750.3 39.264 163 74 4 42 197 5 149 3.43e-32 117
Msa1178360 AT3G12820.2 71.831 71 20 0 49 119 1 71 3.89e-32 118
Msa1178360 AT1G22640.3 41.718 163 86 4 61 218 2 160 5.92e-32 118
Msa1178360 AT2G26950.1 48.246 114 57 2 10 123 13 124 3.73e-31 120
Msa1178360 AT1G56650.1 57.547 106 44 1 12 117 7 111 4.50e-31 117
Msa1178360 AT3G60460.1 51.852 108 50 2 10 116 8 114 1.06e-30 117
Msa1178360 AT5G35550.2 59.574 94 34 1 42 135 45 134 1.14e-30 116
Msa1178360 AT1G66390.1 57.547 106 44 1 12 117 7 111 3.76e-30 114
Msa1178360 AT5G40350.2 63.158 76 28 0 47 122 5 80 7.56e-30 111
Msa1178360 AT3G46130.3 66.667 72 24 0 46 117 9 80 7.85e-30 113
Msa1178360 AT3G27810.2 63.889 72 26 0 47 118 4 75 1.00e-29 111
Msa1178360 AT3G53200.2 64.789 71 25 0 47 117 9 79 1.38e-29 112
Msa1178360 AT5G59780.2 67.606 71 23 0 47 117 20 90 1.41e-29 112
Msa1178360 AT3G46130.4 67.606 71 23 0 47 117 20 90 1.55e-29 112
Msa1178360 AT5G49620.2 49.194 124 48 2 7 116 20 142 5.17e-29 113
Msa1178360 AT1G18960.1 47.107 121 54 3 15 132 10 123 5.67e-28 110
Msa1178360 AT3G09230.1 51.376 109 43 3 15 119 55 157 9.84e-28 111
Msa1178360 AT5G15310.3 57.143 84 36 0 90 173 9 92 1.75e-26 104
Msa1178360 AT3G55730.1 49.533 107 44 3 15 117 56 156 2.44e-26 107
Msa1178360 AT3G23250.2 75.862 58 14 0 61 118 2 59 3.61e-26 103
Msa1178360 AT1G71030.2 50.588 85 42 0 53 137 5 89 5.54e-26 101
Msa1178360 AT2G39880.1 48.598 107 45 3 15 117 50 150 6.26e-26 105
Msa1178360 AT1G71030.1 50.588 85 42 0 53 137 19 103 7.46e-26 101
Msa1178360 AT4G18770.1 45.946 111 54 2 10 118 212 318 9.92e-26 106
Msa1178360 AT5G02320.1 51.402 107 48 3 13 118 125 228 1.43e-25 106
Msa1178360 AT5G02320.2 51.402 107 48 3 13 118 125 228 1.43e-25 106
Msa1178360 AT5G11510.3 50.467 107 49 3 13 118 79 182 1.50e-25 107
Msa1178360 AT5G11510.1 50.467 107 49 3 13 118 79 182 1.50e-25 107
Msa1178360 AT5G11510.4 50.467 107 49 3 13 118 79 182 1.50e-25 107
Msa1178360 AT5G02320.3 51.402 107 48 3 13 118 65 168 1.62e-25 105
Msa1178360 AT3G50060.1 47.706 109 51 4 15 122 6 109 1.66e-25 103
Msa1178360 AT5G11510.5 50.467 107 49 3 13 118 79 182 1.74e-25 106
Msa1178360 AT5G11510.2 50.467 107 49 3 13 118 79 182 1.78e-25 106
Msa1178360 AT5G67300.1 43.182 132 67 5 15 145 6 130 3.94e-25 102
Msa1178360 AT5G40360.1 46.226 106 54 3 13 118 156 258 8.14e-25 102
Msa1178360 AT3G09370.2 50.943 106 48 3 13 117 133 235 2.14e-24 103
Msa1178360 AT3G09370.1 50.943 106 48 3 13 117 128 230 2.26e-24 102
Msa1178360 AT3G27785.1 50.485 103 47 3 10 111 184 283 2.53e-24 102
Msa1178360 AT3G09370.3 50.943 106 48 3 13 117 141 243 3.26e-24 102
Msa1178360 AT2G23290.1 49.038 104 49 3 15 117 13 113 3.96e-24 99.8
Msa1178360 AT5G58850.1 47.000 100 51 1 13 112 103 200 7.04e-24 100
Msa1178360 AT4G37260.1 47.115 104 51 3 15 117 13 113 1.07e-23 99.0
Msa1178360 AT1G17950.1 47.222 108 53 3 11 117 1 105 1.22e-23 97.4
Msa1178360 AT4G32730.1 45.794 107 54 3 13 118 85 188 3.97e-23 99.8
Msa1178360 AT4G32730.5 45.794 107 54 3 13 118 85 188 4.39e-23 99.8
Msa1178360 AT4G32730.4 45.794 107 54 3 13 118 85 188 4.39e-23 99.8
Msa1178360 AT4G32730.3 45.794 107 54 3 13 118 85 188 4.39e-23 99.8
Msa1178360 AT4G32730.2 45.794 107 54 3 13 118 85 188 4.39e-23 99.8
Msa1178360 AT5G14750.4 36.691 139 68 3 61 197 2 122 2.14e-22 91.3
Msa1178360 AT5G14750.2 36.691 139 68 3 61 197 2 122 2.14e-22 91.3
Msa1178360 AT5G11050.1 46.465 99 49 3 15 112 105 200 2.22e-22 96.7
Msa1178360 AT1G66380.3 59.740 77 31 0 41 117 2 78 2.86e-22 89.7
Msa1178360 AT4G00540.2 47.706 109 52 3 13 118 101 207 7.24e-22 95.1
Msa1178360 AT4G00540.2 32.743 113 67 4 15 119 46 157 9.91e-11 62.4
Msa1178360 AT1G73410.1 48.077 104 50 3 15 117 6 106 1.38e-21 91.7
Msa1178360 AT4G00540.1 47.706 109 52 3 13 118 99 205 1.47e-21 94.4
Msa1178360 AT1G73410.2 48.077 104 50 3 15 117 6 106 3.47e-21 89.7
Msa1178360 AT4G33450.1 43.243 111 59 3 8 117 12 119 5.13e-21 90.1
Msa1178360 AT1G69560.1 42.202 109 61 1 10 118 102 208 2.33e-20 89.7
Msa1178360 AT1G69560.2 42.202 109 61 1 10 118 118 224 2.91e-20 89.7
Msa1178360 AT2G25230.1 42.727 110 58 4 10 118 21 126 3.13e-20 87.8
Msa1178360 AT1G26780.1 43.810 105 57 1 13 117 96 198 2.91e-19 85.9
Msa1178360 AT1G66380.2 54.118 85 38 1 12 96 7 90 3.29e-19 81.6
Msa1178360 AT1G26780.2 43.810 105 57 1 13 117 96 198 4.54e-19 86.7
Msa1178360 AT5G61420.1 71.154 52 15 0 83 134 2 53 1.44e-18 84.3
Msa1178360 AT3G29020.1 38.095 105 61 3 15 118 65 166 1.37e-16 77.8
Msa1178360 AT5G17800.1 41.748 103 58 2 15 117 93 193 1.61e-16 79.0
Msa1178360 AT3G29020.2 38.095 105 61 3 15 118 67 168 2.71e-16 78.2
Msa1178360 AT2G37630.1 36.220 127 78 2 18 142 7 132 4.98e-16 77.8
Msa1178360 AT5G59780.1 65.217 46 16 0 72 117 1 46 7.33e-16 74.3
Msa1178360 AT3G46130.2 65.217 46 16 0 72 117 1 46 9.40e-16 74.3
Msa1178360 AT1G22640.2 36.567 134 76 4 90 218 16 145 1.08e-15 74.3
Msa1178360 AT5G40430.1 36.364 110 64 4 10 118 49 153 1.65e-15 75.1
Msa1178360 AT2G02820.3 39.000 100 59 1 18 117 33 130 4.22e-15 75.1
Msa1178360 AT4G28110.2 70.732 41 12 0 90 130 4 44 5.39e-15 72.4
Msa1178360 AT1G74650.3 69.767 43 13 0 79 121 1 43 9.17e-15 73.2
Msa1178360 AT2G02820.1 39.000 100 59 1 18 117 33 130 1.09e-14 74.3
Msa1178360 AT1G14350.2 39.000 100 59 1 18 117 28 125 1.31e-14 73.9
Msa1178360 AT1G14350.1 39.000 100 59 1 18 117 28 125 1.31e-14 73.9
Msa1178360 AT2G02820.2 39.000 100 59 1 18 117 33 130 1.60e-14 73.9
Msa1178360 AT3G28910.2 70.000 40 12 0 79 118 1 40 3.01e-13 68.6
Msa1178360 AT1G74430.2 57.895 57 23 1 79 134 7 63 5.12e-13 67.0
Msa1178360 AT4G25560.2 55.319 47 21 0 73 119 3 49 2.55e-12 65.5
Msa1178360 AT1G14350.3 48.333 60 31 0 58 117 23 82 9.21e-12 65.5
Msa1178360 AT1G14350.4 48.333 60 31 0 58 117 23 82 9.21e-12 65.5
Msa1178360 AT5G39700.1 37.143 105 61 4 16 119 57 157 2.11e-11 62.4
Msa1178360 AT5G14340.2 59.524 42 17 0 90 131 10 51 6.21e-11 60.8
Msa1178360 AT1G16490.2 67.442 43 12 1 78 118 7 49 8.86e-11 60.8

Find 52 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAATTTGATTTGGAAAT+TGG 0.089428 8_1:-11056425 None:intergenic
ACCTTGTTGTGATAACAAAA+TGG 0.200976 8_1:+11054302 Msa1178360:CDS
CAATAACAACATTCCTTCTT+TGG 0.206897 8_1:+11056532 Msa1178360:CDS
CTGACTATTTCCTTAAGATA+TGG 0.244127 8_1:+11056573 Msa1178360:CDS
GGCGATAGATGAATTTGATT+TGG 0.298295 8_1:-11056432 None:intergenic
TTCGTTGCGGTAAGAGTTGC+CGG 0.304296 8_1:+11055318 Msa1178360:CDS
CACTGCACTGCAACTCTTGT+TGG 0.308906 8_1:+11056847 Msa1178360:CDS
CCTTGTTGTGATAACAAAAT+GGG 0.328230 8_1:+11054303 Msa1178360:CDS
ATCTCATTGTCAGTTCTTCC+TGG 0.339461 8_1:-11056308 None:intergenic
CTTCAGAGTTCCATATCTTA+AGG 0.345177 8_1:-11056583 None:intergenic
ATGAATTTGATTTGGAAATT+GGG 0.367952 8_1:-11056424 None:intergenic
AAGGGACCGCGTTTAATATC+AGG 0.376248 8_1:-11055365 None:intergenic
CGCGTTTAATATCAGGTCTT+AGG 0.377987 8_1:-11055358 None:intergenic
CACGCGCCACATGGCTCAAT+GGG 0.396446 8_1:+11056454 Msa1178360:CDS
CCACGCGCCACATGGCTCAA+TGG 0.417264 8_1:+11056453 Msa1178360:CDS
CGTTCTCTTCCTAAGTTAGC+AGG 0.426052 8_1:+11054408 Msa1178360:CDS
AAGCTCATATCATTGTTAGA+AGG 0.437167 8_1:-11056875 None:intergenic
AATATCAGGTCTTAGGTAGT+TGG 0.437328 8_1:-11055351 None:intergenic
GTAAGAGTTGCCGGCTAAGA+TGG 0.456858 8_1:+11055327 Msa1178360:CDS
GTGATGAGGCTATTGGTTCA+TGG 0.467436 8_1:-11056394 None:intergenic
TTCATGCTATACTTGGAAAC+AGG 0.467617 8_1:+11055420 Msa1178360:CDS
AATTACAAGTCATTTGATGT+AGG 0.475589 8_1:+11056779 Msa1178360:CDS
AACAAAATGGGGTTGAAGAA+AGG 0.484655 8_1:+11054315 Msa1178360:CDS
ATACAGCTTCATGCTATACT+TGG 0.486783 8_1:+11055413 Msa1178360:CDS
AAAATGGTGGTCATGGAAGC+TGG 0.495565 8_1:+11054385 Msa1178360:CDS
AAGATATGGAACTCTGAAGT+TGG 0.497165 8_1:+11056587 Msa1178360:CDS
AACTCTTACCGCAACGAAGA+AGG 0.505550 8_1:-11055313 None:intergenic
GCTATTGGTTCATGGGTTTG+TGG 0.506899 8_1:-11056386 None:intergenic
AAAGAAACGTCTCATATGCA+TGG 0.523969 8_1:+11056355 Msa1178360:CDS
TCAATTGCCTCTCAGCTACC+AGG 0.524112 8_1:+11056290 Msa1178360:CDS
CACTTTCCCATTGAGCCATG+TGG 0.525677 8_1:-11056460 None:intergenic
TGATGAGGCTATTGGTTCAT+GGG 0.527437 8_1:-11056393 None:intergenic
GGTAGTTGGTCCATCTTAGC+CGG 0.536805 8_1:-11055337 None:intergenic
TCATCTTCTTCACTAGTCCA+TGG 0.537332 8_1:-11054339 None:intergenic
TTCGTCGTCTGATTTGCGAC+CGG 0.551788 8_1:-11056624 None:intergenic
CTTCTTGAGACATTGAACTC+TGG 0.559731 8_1:-11056670 None:intergenic
TGTAATAACAACAACAAATG+TGG 0.560142 8_1:+11056701 Msa1178360:CDS
TACTACAACAAGCAATGTGA+TGG 0.566980 8_1:+11056739 Msa1178360:CDS
CAGAGTTCAATGTCTCAAGA+AGG 0.569037 8_1:+11056671 Msa1178360:CDS
AAGAAACGTCTCATATGCAT+GGG 0.571800 8_1:+11056356 Msa1178360:CDS
CTTTCAGGCCTTCTTCGTTG+CGG 0.574007 8_1:+11055305 Msa1178360:intron
TGGGGTTGAAGAAAGGTCCA+TGG 0.581977 8_1:+11054322 Msa1178360:CDS
AAGTAATGTGATGAGGCTAT+TGG 0.582396 8_1:-11056401 None:intergenic
CAAGACTTGAAGCAGAAGCA+AGG 0.585545 8_1:+11056483 Msa1178360:CDS
CCATTGAGCCATGTGGCGCG+TGG 0.604740 8_1:-11056453 None:intergenic
AGAGTTCAATGTCTCAAGAA+GGG 0.618934 8_1:+11056672 Msa1178360:CDS
TACAACAAGCAATGTGATGG+AGG 0.620346 8_1:+11056742 Msa1178360:CDS
ACGCGGTCCCTTTACACCTG+AGG 0.638908 8_1:+11055376 Msa1178360:CDS
CTTGTTGTGATAACAAAATG+GGG 0.670831 8_1:+11054304 Msa1178360:CDS
AGTTCTTCCTGGTAGCTGAG+AGG 0.678055 8_1:-11056297 None:intergenic
AATTGGGAAGTAATGTGATG+AGG 0.686160 8_1:-11056408 None:intergenic
CTAAGACCTGATATTAAACG+CGG 0.689576 8_1:+11055359 Msa1178360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCTTCATAAATATATA+AGG - chr8_1:11054472-11054491 None:intergenic 10.0%
!!! TTTTTTTTTTATGAAATACT+AGG + chr8_1:11054809-11054828 Msa1178360:intron 10.0%
!!! AACATTTTTAAATAAAGTTT+TGG + chr8_1:11055843-11055862 Msa1178360:intron 10.0%
!! TAGTATAAATATTTCATAAT+AGG + chr8_1:11055891-11055910 Msa1178360:intron 10.0%
!! AGTATAAATATTTCATAATA+GGG + chr8_1:11055892-11055911 Msa1178360:intron 10.0%
!!! GTTAATTTTATCAAGAAAAA+TGG + chr8_1:11054369-11054388 Msa1178360:CDS 15.0%
!!! TGTATTTAAGTTATTTTCAT+AGG - chr8_1:11054668-11054687 None:intergenic 15.0%
!! AAATATTTATACTAACATCA+TGG - chr8_1:11055885-11055904 None:intergenic 15.0%
!! TCATTAATAATTTAAGAAAG+TGG - chr8_1:11056100-11056119 None:intergenic 15.0%
!!! AATTTTATCAAGAAAAATGG+TGG + chr8_1:11054372-11054391 Msa1178360:CDS 20.0%
!! TCTTCATAAATATATAAGGA+GGG - chr8_1:11054468-11054487 None:intergenic 20.0%
!! TTCTTCATAAATATATAAGG+AGG - chr8_1:11054469-11054488 None:intergenic 20.0%
!! AAGAAATATAAGTCTATGTT+TGG + chr8_1:11054484-11054503 Msa1178360:intron 20.0%
!! TGAGTAAAATTTATGAAAAC+AGG + chr8_1:11054546-11054565 Msa1178360:intron 20.0%
!!! TTTTTAACCTAACTTTTCAT+TGG + chr8_1:11054753-11054772 Msa1178360:intron 20.0%
!!! AAAAAGTACAAACCAATAAA+GGG - chr8_1:11054878-11054897 None:intergenic 20.0%
!!! TAAAAAGTACAAACCAATAA+AGG - chr8_1:11054879-11054898 None:intergenic 20.0%
!! TTACCTAAGAAGTTATTATT+AGG + chr8_1:11054896-11054915 Msa1178360:intron 20.0%
!! TATCCTAATAATAACTTCTT+AGG - chr8_1:11054902-11054921 None:intergenic 20.0%
!! GGATAATAATATTGTCTTAA+AGG + chr8_1:11054917-11054936 Msa1178360:intron 20.0%
!! TTGTTTGTATTCAATATTCA+TGG + chr8_1:11054972-11054991 Msa1178360:intron 20.0%
!! TCTATCATTCAATATCAATA+TGG - chr8_1:11055799-11055818 None:intergenic 20.0%
!! AAATTCTTAAAATATAGCCA+TGG - chr8_1:11056238-11056257 None:intergenic 20.0%
!! ACAATGAGATCAAAAATTTA+TGG + chr8_1:11056321-11056340 Msa1178360:CDS 20.0%
!!! ATGAATTTGATTTGGAAATT+GGG - chr8_1:11056427-11056446 None:intergenic 20.0%
! ATTTATGCCAATGAAAAGTT+AGG - chr8_1:11054763-11054782 None:intergenic 25.0%
!! CTCATATTTAGAACACATAA+TGG - chr8_1:11055187-11055206 None:intergenic 25.0%
!! CATTATGTGTTCTAAATATG+AGG + chr8_1:11055185-11055204 Msa1178360:intron 25.0%
!!! TAAGTTTTTTCGTTTCTTTC+AGG + chr8_1:11055290-11055309 Msa1178360:intron 25.0%
!! TTCATTTTCACATACAAGTT+TGG - chr8_1:11055627-11055646 None:intergenic 25.0%
! ACAGAAAAAATCCAAACTAA+TGG + chr8_1:11055736-11055755 Msa1178360:intron 25.0%
! CAGAAAAAATCCAAACTAAT+GGG + chr8_1:11055737-11055756 Msa1178360:intron 25.0%
! GATATTGAATGATAGAAATC+AGG + chr8_1:11055803-11055822 Msa1178360:intron 25.0%
!!! GTTGTTCTGAAAGTATATAA+AGG - chr8_1:11055945-11055964 None:intergenic 25.0%
! AACAAATGTAACAATTTCAC+AGG + chr8_1:11056261-11056280 Msa1178360:intron 25.0%
!!! GATGAATTTGATTTGGAAAT+TGG - chr8_1:11056428-11056447 None:intergenic 25.0%
! TGTAATAACAACAACAAATG+TGG + chr8_1:11056701-11056720 Msa1178360:CDS 25.0%
! AATTACAAGTCATTTGATGT+AGG + chr8_1:11056779-11056798 Msa1178360:CDS 25.0%
! ACCTTGTTGTGATAACAAAA+TGG + chr8_1:11054302-11054321 Msa1178360:CDS 30.0%
! CCTTGTTGTGATAACAAAAT+GGG + chr8_1:11054303-11054322 Msa1178360:CDS 30.0%
! CTTGTTGTGATAACAAAATG+GGG + chr8_1:11054304-11054323 Msa1178360:CDS 30.0%
CAAAAACAGCTTATAGCTAA+TGG + chr8_1:11054618-11054637 Msa1178360:intron 30.0%
! GCTTGTTAAACAAATGTGTT+TGG + chr8_1:11054838-11054857 Msa1178360:intron 30.0%
!!! GATTTTTTGTGACCCTTTAT+TGG + chr8_1:11054863-11054882 Msa1178360:intron 30.0%
AGAGAAAGTTCCAATCTTTA+TGG + chr8_1:11054943-11054962 Msa1178360:intron 30.0%
ACAAACACAACCATAAAGAT+TGG - chr8_1:11054956-11054975 None:intergenic 30.0%
! TTTTTCCCTTCTCATATTCT+TGG - chr8_1:11055106-11055125 None:intergenic 30.0%
AAGGGAAAAATTGAAGTAGA+AGG + chr8_1:11055116-11055135 Msa1178360:intron 30.0%
AGATAACATACTGCTTGTAA+AGG - chr8_1:11055152-11055171 None:intergenic 30.0%
! GTGTTCTAAATATGAGGTTA+AGG + chr8_1:11055191-11055210 Msa1178360:intron 30.0%
! CTGAATCAAGTAGGTTTTTA+TGG + chr8_1:11055216-11055235 Msa1178360:intron 30.0%
TAGTCAAAAGTAACAGGAAT+AGG - chr8_1:11055534-11055553 None:intergenic 30.0%
!! TTTTGGTAGTCAAAAGTAAC+AGG - chr8_1:11055540-11055559 None:intergenic 30.0%
! AACAGACACTAAATAGGTTT+TGG - chr8_1:11055557-11055576 None:intergenic 30.0%
AAACCTATTTAGTGTCTGTT+TGG + chr8_1:11055557-11055576 Msa1178360:intron 30.0%
AATCCAAACAGACACTAAAT+AGG - chr8_1:11055563-11055582 None:intergenic 30.0%
! TCTAAAACTCAGTAAATGTG+AGG + chr8_1:11055648-11055667 Msa1178360:intron 30.0%
!!! TTGGATTTTTTCTGTTCAAC+TGG - chr8_1:11055731-11055750 None:intergenic 30.0%
ATTGAATGATAGAAATCAGG+TGG + chr8_1:11055806-11055825 Msa1178360:intron 30.0%
AGAAATCAGGTGGATATTTA+TGG + chr8_1:11055816-11055835 Msa1178360:intron 30.0%
TTGACCATTGAAATACCTTT+CGG + chr8_1:11055972-11055991 Msa1178360:intron 30.0%
AAATATAGCCATGGAGAAAA+TGG - chr8_1:11056229-11056248 None:intergenic 30.0%
AAATGTAACAATTTCACAGG+TGG + chr8_1:11056264-11056283 Msa1178360:intron 30.0%
AATGTAACAATTTCACAGGT+GGG + chr8_1:11056265-11056284 Msa1178360:intron 30.0%
CAATAACAACATTCCTTCTT+TGG + chr8_1:11056532-11056551 Msa1178360:CDS 30.0%
CTGACTATTTCCTTAAGATA+TGG + chr8_1:11056573-11056592 Msa1178360:CDS 30.0%
AAGCTCATATCATTGTTAGA+AGG - chr8_1:11056878-11056897 None:intergenic 30.0%
!! CCCATTTTGTTATCACAACA+AGG - chr8_1:11054306-11054325 None:intergenic 35.0%
AACAAAATGGGGTTGAAGAA+AGG + chr8_1:11054315-11054334 Msa1178360:CDS 35.0%
ATCAAGAAAAATGGTGGTCA+TGG + chr8_1:11054378-11054397 Msa1178360:CDS 35.0%
CTTCAAAAACCTGCTAACTT+AGG - chr8_1:11054420-11054439 None:intergenic 35.0%
ATGCACACTTATGATCTGTT+TGG - chr8_1:11054732-11054751 None:intergenic 35.0%
ACAAAGCCAAGAATATGAGA+AGG + chr8_1:11055097-11055116 Msa1178360:intron 35.0%
CAAAGCCAAGAATATGAGAA+GGG + chr8_1:11055098-11055117 Msa1178360:intron 35.0%
!! GTTAAGGTTCTGAATCAAGT+AGG + chr8_1:11055207-11055226 Msa1178360:intron 35.0%
AATATCAGGTCTTAGGTAGT+TGG - chr8_1:11055354-11055373 None:intergenic 35.0%
CTAAGACCTGATATTAAACG+CGG + chr8_1:11055359-11055378 Msa1178360:CDS 35.0%
! TTTTCTTCCTCAGGTGTAAA+GGG - chr8_1:11055386-11055405 None:intergenic 35.0%
! TTTTTCTTCCTCAGGTGTAA+AGG - chr8_1:11055387-11055406 None:intergenic 35.0%
!!! ATGACTAGTTTTTCTTCCTC+AGG - chr8_1:11055395-11055414 None:intergenic 35.0%
ATACAGCTTCATGCTATACT+TGG + chr8_1:11055413-11055432 Msa1178360:CDS 35.0%
TTCATGCTATACTTGGAAAC+AGG + chr8_1:11055420-11055439 Msa1178360:CDS 35.0%
CTGCTGAAACAAAGTCTAAA+GGG - chr8_1:11055460-11055479 None:intergenic 35.0%
TCTGCTGAAACAAAGTCTAA+AGG - chr8_1:11055461-11055480 None:intergenic 35.0%
TTAGTGTCTGTTTGGATTGA+TGG + chr8_1:11055565-11055584 Msa1178360:intron 35.0%
!!! GATTTTTTCTGTTCAACTGG+AGG - chr8_1:11055728-11055747 None:intergenic 35.0%
TATTTCAAATGAGCCTAAGC+AGG - chr8_1:11055770-11055789 None:intergenic 35.0%
! TTTCATGACCATTTTCTCCA+TGG + chr8_1:11056218-11056237 Msa1178360:intron 35.0%
AAAGAAACGTCTCATATGCA+TGG + chr8_1:11056355-11056374 Msa1178360:CDS 35.0%
AAGAAACGTCTCATATGCAT+GGG + chr8_1:11056356-11056375 Msa1178360:CDS 35.0%
AAGTAATGTGATGAGGCTAT+TGG - chr8_1:11056404-11056423 None:intergenic 35.0%
AATTGGGAAGTAATGTGATG+AGG - chr8_1:11056411-11056430 None:intergenic 35.0%
GGCGATAGATGAATTTGATT+TGG - chr8_1:11056435-11056454 None:intergenic 35.0%
CTTCAGAGTTCCATATCTTA+AGG - chr8_1:11056586-11056605 None:intergenic 35.0%
!! AAGATATGGAACTCTGAAGT+TGG + chr8_1:11056587-11056606 Msa1178360:CDS 35.0%
AGAGTTCAATGTCTCAAGAA+GGG + chr8_1:11056672-11056691 Msa1178360:CDS 35.0%
TACTACAACAAGCAATGTGA+TGG + chr8_1:11056739-11056758 Msa1178360:CDS 35.0%
!! ATGTGATGGAGGATTTTGAA+TGG + chr8_1:11056753-11056772 Msa1178360:CDS 35.0%
TCATCTTCTTCACTAGTCCA+TGG - chr8_1:11054342-11054361 None:intergenic 40.0%
CGCGTTTAATATCAGGTCTT+AGG - chr8_1:11055361-11055380 None:intergenic 40.0%
TGAGTTAAGCGAAATCACGT+TGG + chr8_1:11055588-11055607 Msa1178360:intron 40.0%
TTCTGTTCAACTGGAGGAAT+AGG - chr8_1:11055722-11055741 None:intergenic 40.0%
AGGCACAATTCCCATTAGTT+TGG - chr8_1:11055750-11055769 None:intergenic 40.0%
GAACATGGTTCATCTACTGA+GGG - chr8_1:11055999-11056018 None:intergenic 40.0%
ATCTCATTGTCAGTTCTTCC+TGG - chr8_1:11056311-11056330 None:intergenic 40.0%
!! TGATGAGGCTATTGGTTCAT+GGG - chr8_1:11056396-11056415 None:intergenic 40.0%
!! GTTTTGTTGCTTGCCAAAGA+AGG - chr8_1:11056548-11056567 None:intergenic 40.0%
CTTCTTGAGACATTGAACTC+TGG - chr8_1:11056673-11056692 None:intergenic 40.0%
CAGAGTTCAATGTCTCAAGA+AGG + chr8_1:11056671-11056690 Msa1178360:CDS 40.0%
TACAACAAGCAATGTGATGG+AGG + chr8_1:11056742-11056761 Msa1178360:CDS 40.0%
AAAATGGTGGTCATGGAAGC+TGG + chr8_1:11054385-11054404 Msa1178360:CDS 45.0%
CGTTCTCTTCCTAAGTTAGC+AGG + chr8_1:11054408-11054427 Msa1178360:CDS 45.0%
AACTCTTACCGCAACGAAGA+AGG - chr8_1:11055316-11055335 None:intergenic 45.0%
AAGGGACCGCGTTTAATATC+AGG - chr8_1:11055368-11055387 None:intergenic 45.0%
AATGGGAATTGTGCCTGCTT+AGG + chr8_1:11055754-11055773 Msa1178360:intron 45.0%
CATAATAGGGCTGTCACATG+TGG + chr8_1:11055905-11055924 Msa1178360:intron 45.0%
!! GGGTCCGAAAGGTATTTCAA+TGG - chr8_1:11055979-11055998 None:intergenic 45.0%
CGAACATGGTTCATCTACTG+AGG - chr8_1:11056000-11056019 None:intergenic 45.0%
CACTGAACACGAATCGAACA+TGG - chr8_1:11056014-11056033 None:intergenic 45.0%
!! CACGTGTGTTAGTGTCGTTT+CGG - chr8_1:11056061-11056080 None:intergenic 45.0%
!! GCTATTGGTTCATGGGTTTG+TGG - chr8_1:11056389-11056408 None:intergenic 45.0%
!! GTGATGAGGCTATTGGTTCA+TGG - chr8_1:11056397-11056416 None:intergenic 45.0%
CAAGACTTGAAGCAGAAGCA+AGG + chr8_1:11056483-11056502 Msa1178360:CDS 45.0%
! GTTGGACAATCTTTTCGCAC+CGG + chr8_1:11056605-11056624 Msa1178360:CDS 45.0%
TGGGGTTGAAGAAAGGTCCA+TGG + chr8_1:11054322-11054341 Msa1178360:CDS 50.0%
CTTTCAGGCCTTCTTCGTTG+CGG + chr8_1:11055305-11055324 Msa1178360:intron 50.0%
TTCGTTGCGGTAAGAGTTGC+CGG + chr8_1:11055318-11055337 Msa1178360:CDS 50.0%
! GTAAGAGTTGCCGGCTAAGA+TGG + chr8_1:11055327-11055346 Msa1178360:CDS 50.0%
GGTAGTTGGTCCATCTTAGC+CGG - chr8_1:11055340-11055359 None:intergenic 50.0%
!! GTGCACTTTAGAGTGCTGAG+TGG + chr8_1:11055507-11055526 Msa1178360:intron 50.0%
AATAGGGCTGTCACATGTGG+TGG + chr8_1:11055908-11055927 Msa1178360:intron 50.0%
TCATCTACTGAGGGTCCGAA+AGG - chr8_1:11055990-11056009 None:intergenic 50.0%
TCAATTGCCTCTCAGCTACC+AGG + chr8_1:11056290-11056309 Msa1178360:CDS 50.0%
AGTTCTTCCTGGTAGCTGAG+AGG - chr8_1:11056300-11056319 None:intergenic 50.0%
CACTTTCCCATTGAGCCATG+TGG - chr8_1:11056463-11056482 None:intergenic 50.0%
! TTCGTCGTCTGATTTGCGAC+CGG - chr8_1:11056627-11056646 None:intergenic 50.0%
CACTGCACTGCAACTCTTGT+TGG + chr8_1:11056847-11056866 Msa1178360:CDS 50.0%
ACGCGGTCCCTTTACACCTG+AGG + chr8_1:11055376-11055395 Msa1178360:CDS 60.0%
ATCTATCGCCACGCGCCACA+TGG + chr8_1:11056445-11056464 Msa1178360:CDS 60.0%
CACGCGCCACATGGCTCAAT+GGG + chr8_1:11056454-11056473 Msa1178360:CDS 60.0%
CCATTGAGCCATGTGGCGCG+TGG - chr8_1:11056456-11056475 None:intergenic 65.0%
CCACGCGCCACATGGCTCAA+TGG + chr8_1:11056453-11056472 Msa1178360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 11054291 11056907 11054291 ID=Msa1178360;Name=Msa1178360
chr8_1 mRNA 11054291 11056907 11054291 ID=Msa1178360-mRNA-1;Parent=Msa1178360;Name=Msa1178360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0.33|1|1|1|3|0|297
chr8_1 exon 11054291 11054429 11054291 ID=Msa1178360-mRNA-1:exon:3868;Parent=Msa1178360-mRNA-1
chr8_1 exon 11055312 11055441 11055312 ID=Msa1178360-mRNA-1:exon:3869;Parent=Msa1178360-mRNA-1
chr8_1 exon 11056283 11056907 11056283 ID=Msa1178360-mRNA-1:exon:3870;Parent=Msa1178360-mRNA-1
chr8_1 CDS 11054291 11054429 11054291 ID=Msa1178360-mRNA-1:cds;Parent=Msa1178360-mRNA-1
chr8_1 CDS 11055312 11055441 11055312 ID=Msa1178360-mRNA-1:cds;Parent=Msa1178360-mRNA-1
chr8_1 CDS 11056283 11056907 11056283 ID=Msa1178360-mRNA-1:cds;Parent=Msa1178360-mRNA-1
Gene Sequence

>Msa1178360

ATGGGAAGAACACCTTGTTGTGATAACAAAATGGGGTTGAAGAAAGGTCCATGGACTAGTGAAGAAGATGAAGTTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCTTCGTTGCGGTAAGAGTTGCCGGCTAAGATGGACCAACTACCTAAGACCTGATATTAAACGCGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCTATACTTGGAAACAGGTGGGCTTCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAGATCAAAAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACCCATGAACCAATAGCCTCATCACATTACTTCCCAATTTCCAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACACATCTTTAATCAACAATAACAACATTCCTTCTTTGGCAAGCAACAAAACTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCACCGGTCGCAAATCAGACGACGAAGACGATGATGATAAAACTAAGTGCCAGAGTTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAACAACAAATGTGGATCAGTTTCTGTTACTACTACAACAAGCAATGTGATGGAGGATTTTGAATGGAGAAATTACAAGTCATTTGATGTAGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCACTGCAACTCTTGTTGGATTTTCCTTCTAACAATGATATGAGCTTCTTAGAATGA
Protein sequence

>Msa1178360

MGRTPCCDNKMGLKKGPWTSEEDEVLVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWASIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYFPISKSNSSIATRHMAQWESARLEAEARLSKDTSLINNNNIPSLASNKTDSDYFLKIWNSEVGQSFRTGRKSDDEDDDDKTKCQSSMSQEGSSCNNNNKCGSVSVTTTTSNVMEDFEWRNYKSFDVGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE*