AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178940 MtrunA17_Chr8g0343451 91.875 320 22 3 1 318 1 318 0.0 564
Msa1178940 MtrunA17_Chr2g0329811 50.737 339 124 10 7 318 23 345 3.55e-87 265
Msa1178940 MtrunA17_Chr2g0300261 48.404 188 86 6 111 287 17 204 2.08e-45 154
Msa1178940 MtrunA17_Chr2g0292411 62.222 90 33 1 138 227 85 173 6.43e-33 120
Msa1178940 MtrunA17_Chr3g0103391 53.774 106 45 2 118 222 124 226 7.63e-32 121
Msa1178940 MtrunA17_Chr8g0352251 44.444 171 73 7 130 280 115 283 7.85e-31 117
Msa1178940 MtrunA17_Chr7g0267581 47.500 120 44 4 112 227 122 226 4.74e-26 105
Msa1178940 MtrunA17_Chr1g0177091 47.899 119 43 4 112 226 120 223 5.54e-26 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178940 AT3G14020.2 45.695 302 135 13 4 294 17 300 5.70e-56 184
Msa1178940 AT3G14020.1 45.695 302 135 13 4 294 17 300 5.70e-56 184
Msa1178940 AT1G72830.1 37.576 330 175 9 4 316 23 338 1.29e-50 171
Msa1178940 AT1G72830.2 37.160 331 176 10 4 316 23 339 7.43e-49 166
Msa1178940 AT1G54160.1 46.835 237 108 7 17 242 24 253 4.33e-47 161
Msa1178940 AT1G17590.3 37.615 327 162 12 7 316 25 326 1.82e-46 160
Msa1178940 AT1G17590.2 37.615 327 162 12 7 316 25 326 1.82e-46 160
Msa1178940 AT1G17590.4 37.615 327 162 12 7 316 25 326 1.82e-46 160
Msa1178940 AT1G17590.1 37.615 327 162 12 7 316 25 326 1.82e-46 160
Msa1178940 AT1G72830.3 33.739 329 164 9 4 316 23 313 4.92e-37 135
Msa1178940 AT1G30500.2 52.632 114 53 1 118 231 52 164 1.85e-35 127
Msa1178940 AT1G30500.1 50.877 114 51 1 118 231 52 160 3.05e-34 124
Msa1178940 AT2G34720.1 47.059 119 53 2 115 227 44 158 7.23e-31 115
Msa1178940 AT5G12840.4 46.032 126 64 3 104 229 112 233 2.82e-30 116
Msa1178940 AT5G12840.2 46.032 126 64 3 104 229 112 233 2.82e-30 116
Msa1178940 AT5G12840.5 46.032 126 64 3 104 229 113 234 3.19e-30 115
Msa1178940 AT5G12840.3 46.032 126 64 3 104 229 113 234 3.19e-30 115
Msa1178940 AT5G12840.1 46.032 126 64 3 104 229 113 234 3.19e-30 115
Msa1178940 AT2G34720.2 49.123 114 48 2 120 227 14 123 8.45e-30 111
Msa1178940 AT2G34720.3 49.123 114 48 2 120 227 14 123 8.45e-30 111
Msa1178940 AT3G20910.1 45.802 131 43 4 106 222 105 221 3.51e-29 114
Msa1178940 AT5G06510.1 49.138 116 45 5 112 226 88 190 2.30e-24 100
Msa1178940 AT5G06510.5 49.138 116 45 5 112 226 88 190 2.30e-24 100
Msa1178940 AT5G06510.2 49.138 116 45 5 112 226 88 190 2.30e-24 100
Msa1178940 AT5G06510.6 49.138 116 45 5 112 226 88 190 2.30e-24 100
Msa1178940 AT3G05690.1 47.015 134 49 6 109 234 90 209 4.04e-24 100
Msa1178940 AT5G06510.3 51.351 111 40 5 117 226 44 141 4.37e-24 98.2
Msa1178940 AT5G06510.4 54.369 103 33 5 125 226 6 95 8.08e-24 96.3
Msa1178940 AT5G06510.7 54.369 103 33 5 125 226 6 95 8.08e-24 96.3
Msa1178940 AT3G05690.2 47.015 134 49 6 109 234 127 246 1.14e-23 99.4

Find 142 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTTGCACCTGATTTAA+AGG 0.121318 8_1:-11829117 None:intergenic
CACTGCACTCCAACAATTTA+AGG 0.144712 8_1:+11829295 Msa1178940:five_prime_UTR
TTCCACATCAAACTGAAATT+TGG 0.178975 8_1:-11828819 None:intergenic
ACAAAGTCAACTTACAAATT+TGG 0.188310 8_1:-11831362 None:intergenic
ACTTACAAATTTGGATAATT+AGG 0.197804 8_1:-11831353 None:intergenic
AAAGGAGTTTGAATGCATTA+TGG 0.213329 8_1:+11828899 Msa1178940:five_prime_UTR
CTTCTTATTATTCAAGAATA+AGG 0.217766 8_1:+11837201 Msa1178940:three_prime_UTR
TTGTTATACTGGACAGAAAT+TGG 0.227693 8_1:-11835497 None:intergenic
TCCAGTTTCAGAGTCAATTT+TGG 0.235308 8_1:-11831315 None:intergenic
TCAAGGAACTCATCCCTTAA+TGG 0.244422 8_1:-11830953 None:intergenic
ACTTCTCAACTGTACCATTA+AGG 0.276497 8_1:+11830939 Msa1178940:five_prime_UTR
TTTGAATTATGACTTCTAAA+AGG 0.278171 8_1:+11828747 None:intergenic
GCCAAAATTGACTCTGAAAC+TGG 0.280218 8_1:+11831314 Msa1178940:five_prime_UTR
CAAACTGAAATTTGGCATAT+TGG 0.283643 8_1:-11828811 None:intergenic
AAAACAAAACATGTCGAGTT+TGG 0.296791 8_1:+11829377 Msa1178940:five_prime_UTR
TACTTTGCCTCCTTCTCAAC+TGG 0.301003 8_1:+11835604 Msa1178940:CDS
AACTGGTCGTCAATCTTATC+TGG 0.313777 8_1:+11834736 Msa1178940:CDS
TGCTTTGCATTCACGTATAT+TGG 0.351246 8_1:-11836569 None:intergenic
ATCAGGTGCAAAGCAGAATA+TGG 0.356738 8_1:+11829124 Msa1178940:five_prime_UTR
AAGGAGTTTGAATGCATTAT+GGG 0.358943 8_1:+11828900 Msa1178940:five_prime_UTR
CATTGATGCACTCATGAGTT+TGG 0.376968 8_1:+11829434 Msa1178940:five_prime_UTR
ACATTATTCCGTGATCCATA+TGG 0.396988 8_1:-11835951 None:intergenic
CTGAAGTATTGATGCAAAAG+TGG 0.400283 8_1:+11828935 Msa1178940:five_prime_UTR
CAATGCTTGTTGCATTCCAT+TGG 0.402633 8_1:+11837130 Msa1178940:three_prime_UTR
CATATATACTTACAAGTGAT+TGG 0.407417 8_1:-11835634 None:intergenic
TGAAGAACTCAATCGCTTGA+AGG 0.411967 8_1:+11828969 Msa1178940:five_prime_UTR
ATCTTATCTGGAAGTTGGTT+CGG 0.412123 8_1:+11834748 Msa1178940:CDS
GGTTCTTCACAAAGATTAAG+AGG 0.415954 8_1:-11836548 None:intergenic
CTTCTCAACTGTACCATTAA+GGG 0.425047 8_1:+11830940 Msa1178940:five_prime_UTR
TGTTCAACACTTAGCGAAAC+CGG 0.430982 8_1:+11835530 Msa1178940:CDS
CAGGTCATCTGCAGGAAGTC+AGG 0.433122 8_1:+11835577 Msa1178940:CDS
TTTGTAGCCATGAAAATGTT+TGG 0.434600 8_1:+11837252 Msa1178940:three_prime_UTR
CAAACTCATGAGTGCATCAA+TGG 0.434631 8_1:-11829433 None:intergenic
TTCCATTGGGAAGTCATCCT+TGG 0.442295 8_1:+11837144 Msa1178940:three_prime_UTR
GCAGAATATGGTTGATGGAT+TGG 0.447800 8_1:+11829136 Msa1178940:five_prime_UTR
TGAAGTCGGATTCATGTTGT+TGG 0.453276 8_1:-11836989 None:intergenic
ATAATTAGGTTCCATGATAA+CGG 0.455741 8_1:-11831339 None:intergenic
AAGCAGTGTCCTTAAATTGT+TGG 0.455936 8_1:-11829304 None:intergenic
ATTGAGTAGAAGAAGAATCT+TGG 0.456059 8_1:-11834712 None:intergenic
AAAGATTAAAGCCATGGTCT+TGG 0.460398 8_1:-11836833 None:intergenic
CATGCTGAGACATACTCTAA+TGG 0.462998 8_1:+11835915 Msa1178940:CDS
AAAAGGATGATTCTACAGAT+TGG 0.465111 8_1:+11828764 Msa1178940:five_prime_UTR
AAGCAGAGGAATTGTTATAC+TGG 0.467814 8_1:-11835508 None:intergenic
TGGTTACCCTTCTCATATGC+AGG 0.470689 8_1:+11837019 Msa1178940:CDS
GGCCTACTAGCAGCTCCATA+TGG 0.471924 8_1:+11835936 Msa1178940:CDS
TCTTCTTCTACTCAATCAAC+TGG 0.473460 8_1:+11834719 Msa1178940:CDS
GTGGAAATGTGCTGGAATCA+AGG 0.474923 8_1:+11836880 Msa1178940:CDS
CACCACAAACATATTTCTAT+AGG 0.475336 8_1:+11829339 Msa1178940:five_prime_UTR
CTAATCATGTCTCTCACATA+AGG 0.480287 8_1:-11837097 None:intergenic
TTGAAGAGAGCTAGAGGCTC+TGG 0.481702 8_1:+11836783 Msa1178940:CDS
GCCGATGCCGGTGGTGGTGG+TGG 0.483222 8_1:+11837050 Msa1178940:CDS
GCAAAGCAGAATATGGTTGA+TGG 0.484486 8_1:+11829131 Msa1178940:five_prime_UTR
TGGCGCGACTCATGTAGATA+TGG 0.485664 8_1:-11836750 None:intergenic
TCAGCCGATGCCGGTGGTGG+TGG 0.489227 8_1:+11837047 Msa1178940:CDS
TGAAACTGGAACCGTTATCA+TGG 0.490634 8_1:+11831328 Msa1178940:five_prime_UTR
CGAACGGGAGGCATTCCTAC+TGG 0.492795 8_1:-11836515 None:intergenic
GATTGGTCGTGCGCAGATAG+AGG 0.497035 8_1:+11828781 Msa1178940:five_prime_UTR
CTCCTATAGAAATATGTTTG+TGG 0.497391 8_1:-11829341 None:intergenic
CAATGAAGCACTCATGGCCA+TGG 0.498100 8_1:+11834570 Msa1178940:exon
GAATGCATTATGGGGAAAGC+TGG 0.500749 8_1:+11828909 Msa1178940:five_prime_UTR
TAGGTAAGCTTTGAATGTAG+TGG 0.501843 8_1:+11834543 Msa1178940:intron
GAAGCTAAATCTGAATTATG+AGG 0.503661 8_1:+11831244 Msa1178940:five_prime_UTR
CAGTAGGAATGCCTCCCGTT+CGG 0.506402 8_1:+11836516 Msa1178940:CDS
GAAGGAAATAATTGACTCAA+AGG 0.507072 8_1:+11828987 Msa1178940:five_prime_UTR
CGTCAATCTTATCTGGAAGT+TGG 0.507589 8_1:+11834743 Msa1178940:CDS
TTGTCAGCCGATGCCGGTGG+TGG 0.509405 8_1:+11837044 Msa1178940:CDS
AATGCTTGTTGCATTCCATT+GGG 0.516081 8_1:+11837131 Msa1178940:three_prime_UTR
TTAATCTTTCCACCACTACT+CGG 0.520809 8_1:+11836847 Msa1178940:CDS
TGCCAAATTTCAGTTTGATG+TGG 0.524866 8_1:+11828817 Msa1178940:five_prime_UTR
ATTCCGACCACCACCACCAC+CGG 0.525135 8_1:-11837057 None:intergenic
TCAACTCGTTTACCAACGAA+TGG 0.528272 8_1:-11830908 None:intergenic
CAGGATTTGTCAGCCGATGC+CGG 0.529122 8_1:+11837038 Msa1178940:CDS
TTGTGCATAATGCCTTGTAC+TGG 0.531696 8_1:-11828870 None:intergenic
GATGCACTCATGAGTTTGGA+AGG 0.537874 8_1:+11829438 Msa1178940:five_prime_UTR
TCTCTCACATAAGGACAGAT+AGG 0.538450 8_1:-11837088 None:intergenic
ACCTTCCACACTCTTTCCGC+CGG 0.539251 8_1:-11835549 None:intergenic
TCACAAAGATTAAGAGGCAA+AGG 0.539813 8_1:-11836542 None:intergenic
GTTTGATGTGGAAACTACTC+TGG 0.541434 8_1:+11828829 Msa1178940:five_prime_UTR
TTAGTAGCAATTATTACTGA+TGG 0.542557 8_1:+11829243 Msa1178940:five_prime_UTR
AGAGGCAAAGGAATCCGAAC+GGG 0.545487 8_1:-11836530 None:intergenic
ATGGCTTGTTGAAAATCAAA+TGG 0.546725 8_1:+11837342 Msa1178940:three_prime_UTR
TGGAAATGTGCTGGAATCAA+GGG 0.553488 8_1:+11836881 Msa1178940:CDS
GAAGTTGGTTCGGAACAATC+CGG 0.553531 8_1:+11834758 Msa1178940:CDS
AATACATCAGCGGTTTGACA+TGG 0.555336 8_1:+11831012 Msa1178940:five_prime_UTR
AGAGTGTGGAAGGTATCATC+AGG 0.556743 8_1:+11835558 Msa1178940:CDS
GACAAATCCTGCATATGAGA+AGG 0.557039 8_1:-11837026 None:intergenic
ATTCTCGATGATCCATTCGT+TGG 0.558141 8_1:+11830896 Msa1178940:five_prime_UTR
AATGAAGCACTCATGGCCAT+GGG 0.561056 8_1:+11834571 Msa1178940:exon
GGAAAACAATGAAGCACTCA+TGG 0.561079 8_1:+11834564 Msa1178940:exon
ATCCATATGGAGCTGCTAGT+AGG 0.561398 8_1:-11835938 None:intergenic
GAATCCGAGTGGAAATGTGC+TGG 0.564823 8_1:+11836872 Msa1178940:CDS
CTCTCTTCAATGCATGCAGA+TGG 0.566697 8_1:-11836770 None:intergenic
TGGCATCAAGCTTTGAGCCA+CGG 0.570397 8_1:-11831295 None:intergenic
ATGAGTTCCTTGAAAATGCT+AGG 0.571733 8_1:+11830963 Msa1178940:five_prime_UTR
CGGATTCAGCCGAGTAGTGG+TGG 0.574639 8_1:-11836856 None:intergenic
GGTATCATCAGGTCATCTGC+AGG 0.575460 8_1:+11835569 Msa1178940:CDS
ACTCGGATTCAGCCGAGTAG+TGG 0.577382 8_1:-11836859 None:intergenic
TGAAGTATTGATGCAAAAGT+GGG 0.580899 8_1:+11828936 Msa1178940:five_prime_UTR
ATTATGAGGAAGCTGAGAGA+TGG 0.581117 8_1:+11831258 Msa1178940:five_prime_UTR
ATACATCAGCGGTTTGACAT+GGG 0.582551 8_1:+11831013 Msa1178940:five_prime_UTR
TGACTATCTTTACCAGTACA+AGG 0.586748 8_1:+11828858 Msa1178940:five_prime_UTR
TTAGAGTATGTCTCAGCATG+AGG 0.588380 8_1:-11835912 None:intergenic
ATTAGAAGCACTTGTGACAT+CGG 0.591753 8_1:-11836952 None:intergenic
TCAAATGGTGTTGAATGTGT+AGG 0.593408 8_1:+11837357 Msa1178940:three_prime_UTR
CATTATGCACAAATAATGAA+AGG 0.594563 8_1:+11828881 Msa1178940:five_prime_UTR
CAAGTAGAAAAGTATAGAGA+TGG 0.594749 8_1:+11836909 Msa1178940:CDS
CGAAACCGGCGGAAAGAGTG+TGG 0.602019 8_1:+11835544 Msa1178940:CDS
AGTAATAATTGCTACTAACA+TGG 0.602390 8_1:-11829238 None:intergenic
ACCGGCGGAAAGAGTGTGGA+AGG 0.603635 8_1:+11835548 Msa1178940:CDS
TTGTGATCCAGTTGAGAAGG+AGG 0.605135 8_1:-11835611 None:intergenic
TGGTGGAAAGATTAAAGCCA+TGG 0.605693 8_1:-11836839 None:intergenic
GTTAATCATGCTGAGCCAGT+AGG 0.605706 8_1:+11836500 Msa1178940:CDS
GACATCGGAACAAGTGGTTG+TGG 0.611534 8_1:-11836937 None:intergenic
AAGAGAGCTAGAGGCTCTGG+TGG 0.614598 8_1:+11836786 Msa1178940:CDS
CATGCATTGAAGAGAGCTAG+AGG 0.616928 8_1:+11836777 Msa1178940:CDS
ACATAATTCAAAATGAGCCA+AGG 0.618165 8_1:-11837161 None:intergenic
TACATCAGCGGTTTGACATG+GGG 0.619021 8_1:+11831014 Msa1178940:five_prime_UTR
GATTCCAGCACATTTCCACT+CGG 0.619314 8_1:-11836876 None:intergenic
ACTTGTGACATCGGAACAAG+TGG 0.621149 8_1:-11836943 None:intergenic
AGGAGTTTGAATGCATTATG+GGG 0.622515 8_1:+11828901 Msa1178940:five_prime_UTR
GCTAAGTGTTGAACAAGCAG+AGG 0.624669 8_1:-11835522 None:intergenic
TCTTGAAATTGAAAACCTAG+TGG 0.627398 8_1:-11834689 None:intergenic
ACAAATCCTGCATATGAGAA+GGG 0.629662 8_1:-11837025 None:intergenic
GATTTGTCAGCCGATGCCGG+TGG 0.632484 8_1:+11837041 Msa1178940:CDS
TGGTTGTGATCCAGTTGAGA+AGG 0.633407 8_1:-11835614 None:intergenic
TAGCAGCTCCATATGGATCA+CGG 0.633412 8_1:+11835943 Msa1178940:CDS
GGCAAAGGAATCCGAACGGG+AGG 0.635841 8_1:-11836527 None:intergenic
AGCCAAGGATGACTTCCCAA+TGG 0.637029 8_1:-11837146 None:intergenic
TAGAGTATGTCTCAGCATGA+GGG 0.637829 8_1:-11835911 None:intergenic
GTCTACGTCTCATAATAGCA+TGG 0.645173 8_1:-11836595 None:intergenic
CTGATGGTGCGTGAAGAGAA+CGG 0.648360 8_1:+11829259 Msa1178940:five_prime_UTR
GAATCCGACTTCAGATCATG+TGG 0.653505 8_1:+11836999 Msa1178940:CDS
AAGAGGCAAAGGAATCCGAA+CGG 0.660223 8_1:-11836531 None:intergenic
GTAACCACATGATCTGAAGT+CGG 0.661286 8_1:-11837003 None:intergenic
TGAAGCACTCATGGCCATGG+GGG 0.672419 8_1:+11834573 Msa1178940:CDS
TGCAACAAGTCTAAACCACT+AGG 0.672944 8_1:+11834674 Msa1178940:CDS
TGGATTGTGAATCTCATCCG+TGG 0.676046 8_1:+11831278 Msa1178940:five_prime_UTR
ATGAAGCACTCATGGCCATG+GGG 0.681773 8_1:+11834572 Msa1178940:CDS
CATATTGCAGAATACATCAG+CGG 0.686220 8_1:+11831002 Msa1178940:five_prime_UTR
ACTACTCGGCTGAATCCGAG+TGG 0.691698 8_1:+11836861 Msa1178940:CDS
CTCACATAAGGACAGATAGG+CGG 0.718305 8_1:-11837085 None:intergenic
TCAACACTTAGCGAAACCGG+CGG 0.741425 8_1:+11835533 Msa1178940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATATT+TGG - chr8_1:11833063-11833082 None:intergenic 0.0%
!! AATAAAATGAAAACAAATTA+TGG - chr8_1:11832035-11832054 None:intergenic 10.0%
!! ATATTAATTAAAGTCATAAT+TGG - chr8_1:11832419-11832438 None:intergenic 10.0%
!! AAATAAATAATAGAGTAATA+GGG + chr8_1:11833819-11833838 Msa1178940:intron 10.0%
!!! TTATATGTTCATTTTTATTT+TGG + chr8_1:11834340-11834359 Msa1178940:intron 10.0%
!!! TTCTGTTATTATTTATTTTA+AGG + chr8_1:11834500-11834519 Msa1178940:intron 10.0%
!! AACAAATTTATATCAAACAT+TGG - chr8_1:11829701-11829720 None:intergenic 15.0%
!!! TTCATATGATTTTTAGAATT+TGG + chr8_1:11829898-11829917 Msa1178940:intron 15.0%
!! ATGAGAAATATTACAAAAAA+AGG - chr8_1:11829986-11830005 None:intergenic 15.0%
!! ACACAAATATATTATCAAAT+GGG + chr8_1:11830636-11830655 Msa1178940:intron 15.0%
!! AATGAATTAGCATTTAATAT+AGG - chr8_1:11830735-11830754 None:intergenic 15.0%
!!! CTATTTTCTAAAATTATTAC+TGG + chr8_1:11831523-11831542 Msa1178940:intron 15.0%
!! ACGAAAATATATTATCTATT+TGG - chr8_1:11831994-11832013 None:intergenic 15.0%
!!! AGATAATATATTTTCGTTTT+TGG + chr8_1:11831997-11832016 Msa1178940:intron 15.0%
!!! AAATGATTTTTTAAATCAGT+TGG - chr8_1:11832361-11832380 None:intergenic 15.0%
!!! ATTAAGCTTAATTGTAATTT+TGG + chr8_1:11832912-11832931 Msa1178940:intron 15.0%
!! CTTAAAATATTGTAGTAAAT+TGG - chr8_1:11833233-11833252 None:intergenic 15.0%
!! TTGCTTATATTTAAAAATGA+AGG + chr8_1:11833285-11833304 Msa1178940:intron 15.0%
!! ACTAAAATAAGTAAATTTAC+AGG + chr8_1:11833363-11833382 Msa1178940:intron 15.0%
!!! TAAAATATTTTGAAAAGTGA+AGG + chr8_1:11833409-11833428 Msa1178940:intron 15.0%
!!! AAAGGTAATAATATATTTTG+TGG + chr8_1:11833444-11833463 Msa1178940:intron 15.0%
!!! AAGGTAATAATATATTTTGT+GGG + chr8_1:11833445-11833464 Msa1178940:intron 15.0%
!! AAATTATATCTCATAACTAT+TGG - chr8_1:11833478-11833497 None:intergenic 15.0%
!! GAAATAAATAATAGAGTAAT+AGG + chr8_1:11833818-11833837 Msa1178940:intron 15.0%
!! TAAAAAGAAACAAAATGATA+AGG - chr8_1:11834130-11834149 None:intergenic 15.0%
!! ATGAAAAGTTTATCTATAAA+TGG - chr8_1:11834179-11834198 None:intergenic 15.0%
!!! AGATAAACTTTTCATTTTTT+TGG + chr8_1:11834184-11834203 Msa1178940:intron 15.0%
!! TAAAAAATATGCTAAGAAAT+TGG - chr8_1:11834397-11834416 None:intergenic 15.0%
!!! ATATTAAGTTTTTTCCTATA+CGG - chr8_1:11835382-11835401 None:intergenic 15.0%
!! GAAATTAAAGGAAAAAGAAA+TGG - chr8_1:11829593-11829612 None:intergenic 20.0%
!!! TAATTAAACTGACTTTTTCT+GGG - chr8_1:11829624-11829643 None:intergenic 20.0%
!! GATTTATGAATGGATAAATT+TGG + chr8_1:11829854-11829873 Msa1178940:intron 20.0%
!!! CTCATTAGTTTAGATAAATT+TGG + chr8_1:11830001-11830020 Msa1178940:intron 20.0%
!! TATTTGATGCAATTGAAAAT+TGG + chr8_1:11830205-11830224 Msa1178940:intron 20.0%
!! GACACAAATATATTATCAAA+TGG + chr8_1:11830635-11830654 Msa1178940:intron 20.0%
!!! TTTTTTATAGTGTCCTTATT+AGG + chr8_1:11830826-11830845 Msa1178940:intron 20.0%
!!! ATTATTTTGTAGCAGATATT+AGG - chr8_1:11831046-11831065 None:intergenic 20.0%
!!! CAGCTAATTTTTTTACTATA+GGG + chr8_1:11831178-11831197 Msa1178940:intron 20.0%
!! ACTTACAAATTTGGATAATT+AGG - chr8_1:11831356-11831375 None:intergenic 20.0%
!! AAGAAGCAATTCAAAAATTA+AGG - chr8_1:11831684-11831703 None:intergenic 20.0%
!! CATATGAATACAATATAACT+CGG - chr8_1:11831871-11831890 None:intergenic 20.0%
!! TATATATTAGAATATTGACG+TGG + chr8_1:11831942-11831961 Msa1178940:intron 20.0%
!! TTAATATAAAAGAAAAGAGC+AGG + chr8_1:11832053-11832072 Msa1178940:intron 20.0%
!! AAAAAATTATTTCACTACAG+TGG + chr8_1:11832110-11832129 Msa1178940:intron 20.0%
!! CAAAGTGAAAATATTGAATT+GGG - chr8_1:11832455-11832474 None:intergenic 20.0%
!! CATTAAATAATTGACGTATA+TGG - chr8_1:11832618-11832637 None:intergenic 20.0%
!!! ATTGTTTCTTATTATAAGAC+TGG + chr8_1:11832652-11832671 Msa1178940:intron 20.0%
!! TACAAAATGATGAAAATAGA+GGG - chr8_1:11832939-11832958 None:intergenic 20.0%
!! ATACAAAATGATGAAAATAG+AGG - chr8_1:11832940-11832959 None:intergenic 20.0%
!!! CAATATTTTAAGACTAAATG+TGG + chr8_1:11833241-11833260 Msa1178940:intron 20.0%
!! TGAAGGTAATAACATTAAAA+AGG + chr8_1:11833302-11833321 Msa1178940:intron 20.0%
!!! ACGATATTCATTTTTAATTG+AGG + chr8_1:11833770-11833789 Msa1178940:intron 20.0%
!!! CGATATTCATTTTTAATTGA+GGG + chr8_1:11833771-11833790 Msa1178940:intron 20.0%
!! TTGAAAACGAAAAAACAAAT+GGG - chr8_1:11834087-11834106 None:intergenic 20.0%
!! ACAGAAAAAAACAATCAATT+TGG - chr8_1:11834486-11834505 None:intergenic 20.0%
!! AAGTGAATTTCTATTCTATT+AGG + chr8_1:11834524-11834543 Msa1178940:intron 20.0%
!! ATTTAATTACGAATAGTTAC+CGG - chr8_1:11834780-11834799 None:intergenic 20.0%
!!! AAATTCTATCTAAAATCTGT+TGG + chr8_1:11835068-11835087 Msa1178940:intron 20.0%
!!! AATTCTATCTAAAATCTGTT+GGG + chr8_1:11835069-11835088 Msa1178940:intron 20.0%
!! AATATTTGCAAGAAAAACTA+TGG + chr8_1:11836017-11836036 Msa1178940:intron 20.0%
!! ATCATATTTATGTCTTTATC+TGG + chr8_1:11836041-11836060 Msa1178940:intron 20.0%
!! TGTATGTATATTTCAGAATT+CGG - chr8_1:11836460-11836479 None:intergenic 20.0%
!! CTTCTTATTATTCAAGAATA+AGG + chr8_1:11837201-11837220 Msa1178940:three_prime_UTR 20.0%
! CATTATGCACAAATAATGAA+AGG + chr8_1:11828881-11828900 Msa1178940:five_prime_UTR 25.0%
!! TTTTTCATCACCTTTAAATC+AGG + chr8_1:11829107-11829126 Msa1178940:five_prime_UTR 25.0%
!!! ATCTTTTTTAACCATGACAA+TGG + chr8_1:11829168-11829187 Msa1178940:five_prime_UTR 25.0%
! AGTAATAATTGCTACTAACA+TGG - chr8_1:11829241-11829260 None:intergenic 25.0%
! TTAGTAGCAATTATTACTGA+TGG + chr8_1:11829243-11829262 Msa1178940:five_prime_UTR 25.0%
! CCAATTAAGAAAATAAACAG+TGG - chr8_1:11829489-11829508 None:intergenic 25.0%
!!! CCACTGTTTATTTTCTTAAT+TGG + chr8_1:11829486-11829505 Msa1178940:intron 25.0%
!!! GTTTATTTTCTTAATTGGTG+TGG + chr8_1:11829491-11829510 Msa1178940:intron 25.0%
!!! CTAATTAAACTGACTTTTTC+TGG - chr8_1:11829625-11829644 None:intergenic 25.0%
! TCAGTTTAATTAGAGTCTAA+GGG + chr8_1:11829632-11829651 Msa1178940:intron 25.0%
! TTTACCCATGATTATCATAT+TGG + chr8_1:11829765-11829784 Msa1178940:intron 25.0%
! TTCACCAATATGATAATCAT+GGG - chr8_1:11829772-11829791 None:intergenic 25.0%
! TTTCACCAATATGATAATCA+TGG - chr8_1:11829773-11829792 None:intergenic 25.0%
! TAGCTTCAATGATTTATGAA+TGG + chr8_1:11829844-11829863 Msa1178940:intron 25.0%
!!! TTAGTATTTCCCTTTTTTTG+AGG - chr8_1:11830088-11830107 None:intergenic 25.0%
! ATGTAATGATCAGTATGTAA+TGG + chr8_1:11830126-11830145 Msa1178940:intron 25.0%
! ATACGATAAGAATGATACTT+TGG - chr8_1:11830278-11830297 None:intergenic 25.0%
!!! ATTCTCATTTTTGTTTCTCA+CGG + chr8_1:11830391-11830410 Msa1178940:intron 25.0%
! ATTGTAATATGCAAAAATGC+AGG + chr8_1:11830871-11830890 Msa1178940:intron 25.0%
!!! TAGTCGTATTTTTTCTTTTG+TGG + chr8_1:11831065-11831084 Msa1178940:intron 25.0%
!! AGAGACAATAAAGTATCATA+GGG - chr8_1:11831103-11831122 None:intergenic 25.0%
!!! GCAGCTAATTTTTTTACTAT+AGG + chr8_1:11831177-11831196 Msa1178940:intron 25.0%
! ATAATTAGGTTCCATGATAA+CGG - chr8_1:11831342-11831361 None:intergenic 25.0%
! ACAAAGTCAACTTACAAATT+TGG - chr8_1:11831365-11831384 None:intergenic 25.0%
!!! TGTTACTGACTTGATAAATA+AGG + chr8_1:11831382-11831401 Msa1178940:intron 25.0%
!!! GTTACTGACTTGATAAATAA+GGG + chr8_1:11831383-11831402 Msa1178940:intron 25.0%
! TTTCTACCGTATTAACTTAT+GGG + chr8_1:11831424-11831443 Msa1178940:intron 25.0%
!! ATCCTTTTTCCTCTATTTAT+AGG + chr8_1:11831630-11831649 Msa1178940:intron 25.0%
! ATCCTATAAATAGAGGAAAA+AGG - chr8_1:11831635-11831654 None:intergenic 25.0%
! ATTAAGGATCCTATAAATAG+AGG - chr8_1:11831642-11831661 None:intergenic 25.0%
! CTAGAGCAATTCAAAAATTA+AGG - chr8_1:11831658-11831677 None:intergenic 25.0%
!! CTTAATTTTTGAATTGCTCT+AGG + chr8_1:11831656-11831675 Msa1178940:intron 25.0%
! AAATCTTGAATTTCTACATC+AGG - chr8_1:11832249-11832268 None:intergenic 25.0%
! GCAAAGTGAAAATATTGAAT+TGG - chr8_1:11832456-11832475 None:intergenic 25.0%
! AGCAAATTGCTTACTTAATA+TGG + chr8_1:11832571-11832590 Msa1178940:intron 25.0%
! GCAAATTGCTTACTTAATAT+GGG + chr8_1:11832572-11832591 Msa1178940:intron 25.0%
! TTTCTTATTATAAGACTGGA+CGG + chr8_1:11832656-11832675 Msa1178940:intron 25.0%
! TTACAAAGGACAAATTGTTT+GGG - chr8_1:11832782-11832801 None:intergenic 25.0%
! TTTACAAAGGACAAATTGTT+TGG - chr8_1:11832783-11832802 None:intergenic 25.0%
!!! GTTCTCATATTTTTATCATC+AGG + chr8_1:11832854-11832873 Msa1178940:intron 25.0%
!!! GTAATACGTTTTAAATGACT+TGG + chr8_1:11833027-11833046 Msa1178940:intron 25.0%
! TAATAATATTCTCCAAGGTT+CGG - chr8_1:11833144-11833163 None:intergenic 25.0%
! AACCTTGGAGAATATTATTA+CGG + chr8_1:11833144-11833163 Msa1178940:intron 25.0%
! AAAACTTTAATGAGTGTCTT+TGG + chr8_1:11833325-11833344 Msa1178940:intron 25.0%
! AAACTTTAATGAGTGTCTTT+GGG + chr8_1:11833326-11833345 Msa1178940:intron 25.0%
! TGAAGGATATGTTTACTTAA+AGG + chr8_1:11833426-11833445 Msa1178940:intron 25.0%
!!! TCAGAAATTCTAAAACGATA+TGG + chr8_1:11833611-11833630 Msa1178940:intron 25.0%
! GTTGAAAACGAAAAAACAAA+TGG - chr8_1:11834088-11834107 None:intergenic 25.0%
! AAGAAACAAAATGATAAGGT+TGG - chr8_1:11834126-11834145 None:intergenic 25.0%
!!! TTATTTCTGTGCATATTCAT+AGG + chr8_1:11834147-11834166 Msa1178940:intron 25.0%
! AAAGTAGATTATTAGAGATG+TGG + chr8_1:11834862-11834881 Msa1178940:intron 25.0%
! GAATTACATCAAGTCTAAAT+AGG - chr8_1:11834925-11834944 None:intergenic 25.0%
! CTGAAAATGAGTTTATAAGT+GGG + chr8_1:11835172-11835191 Msa1178940:intron 25.0%
! AATGAAGTGATACAAATTTG+TGG + chr8_1:11835308-11835327 Msa1178940:intron 25.0%
! AATACTCATCAATATGCATT+AGG - chr8_1:11835467-11835486 None:intergenic 25.0%
! CATATATACTTACAAGTGAT+TGG - chr8_1:11835637-11835656 None:intergenic 25.0%
!!! TACAAAGTGTTGATAAATAG+AGG - chr8_1:11835753-11835772 None:intergenic 25.0%
!!! TTAATTTGTGATACGCTATT+TGG - chr8_1:11835776-11835795 None:intergenic 25.0%
!!! TTGCAAATATTTTTGACACA+AGG - chr8_1:11836008-11836027 None:intergenic 25.0%
!! TTGTATGTTTCTGATATTTG+AGG + chr8_1:11836072-11836091 Msa1178940:intron 25.0%
! AGAATTCGTTCAAATTCAAA+AGG - chr8_1:11836253-11836272 None:intergenic 25.0%
!! GAAGTGTTTATAGATTCTAT+TGG + chr8_1:11836367-11836386 Msa1178940:intron 25.0%
! TGTTTATAGATTCTATTGGT+TGG + chr8_1:11836371-11836390 Msa1178940:intron 25.0%
!! TTTCTGTTTCCTTTTCTTTA+AGG + chr8_1:11836678-11836697 Msa1178940:intron 25.0%
!! TTCTGTTTCCTTTTCTTTAA+GGG + chr8_1:11836679-11836698 Msa1178940:intron 25.0%
! ATAAATCTCCCTTAAAGAAA+AGG - chr8_1:11836690-11836709 None:intergenic 25.0%
!!! ATCAAGCTATATTTTTGTCT+AGG + chr8_1:11837311-11837330 Msa1178940:three_prime_UTR 25.0%
AAAAGGATGATTCTACAGAT+TGG + chr8_1:11828764-11828783 Msa1178940:five_prime_UTR 30.0%
CAAACTGAAATTTGGCATAT+TGG - chr8_1:11828814-11828833 None:intergenic 30.0%
TTCCACATCAAACTGAAATT+TGG - chr8_1:11828822-11828841 None:intergenic 30.0%
AAAGGAGTTTGAATGCATTA+TGG + chr8_1:11828899-11828918 Msa1178940:five_prime_UTR 30.0%
AAGGAGTTTGAATGCATTAT+GGG + chr8_1:11828900-11828919 Msa1178940:five_prime_UTR 30.0%
!! TGAAGTATTGATGCAAAAGT+GGG + chr8_1:11828936-11828955 Msa1178940:five_prime_UTR 30.0%
! GAAGGAAATAATTGACTCAA+AGG + chr8_1:11828987-11829006 Msa1178940:five_prime_UTR 30.0%
CATGACAATGGAAGAAAAAA+GGG + chr8_1:11829180-11829199 Msa1178940:five_prime_UTR 30.0%
! CACCACAAACATATTTCTAT+AGG + chr8_1:11829339-11829358 Msa1178940:five_prime_UTR 30.0%
CTCCTATAGAAATATGTTTG+TGG - chr8_1:11829344-11829363 None:intergenic 30.0%
!!! CGACATGTTTTGTTTTGTAA+TGG - chr8_1:11829373-11829392 None:intergenic 30.0%
AAAACAAAACATGTCGAGTT+TGG + chr8_1:11829377-11829396 Msa1178940:five_prime_UTR 30.0%
AATAACATGTGGATATTGTG+TGG - chr8_1:11829562-11829581 None:intergenic 30.0%
GTCAGTTTAATTAGAGTCTA+AGG + chr8_1:11829631-11829650 Msa1178940:intron 30.0%
CAGTTTAATTAGAGTCTAAG+GGG + chr8_1:11829633-11829652 Msa1178940:intron 30.0%
CGATTCTTGATACATGAAAT+AGG - chr8_1:11829797-11829816 None:intergenic 30.0%
TCATTGAAGCTATTAAGCAT+TGG - chr8_1:11829836-11829855 None:intergenic 30.0%
TGGTGGGAATATACTTATAT+TGG - chr8_1:11829931-11829950 None:intergenic 30.0%
ATTGTTTGGTCCTCAAAAAA+AGG + chr8_1:11830075-11830094 Msa1178940:intron 30.0%
TTGTTTGGTCCTCAAAAAAA+GGG + chr8_1:11830076-11830095 Msa1178940:intron 30.0%
!! GTTTAGATTGCGTTTGATTT+TGG + chr8_1:11830148-11830167 Msa1178940:intron 30.0%
TTACTATTGCATTACTTCTG+TGG - chr8_1:11830185-11830204 None:intergenic 30.0%
TTTAGAAGTAACTCTAGACA+TGG - chr8_1:11830431-11830450 None:intergenic 30.0%
!! GATATTGATTCATGATTACG+TGG + chr8_1:11830462-11830481 Msa1178940:intron 30.0%
TACAAATGTGACATCAAATG+TGG + chr8_1:11830492-11830511 Msa1178940:intron 30.0%
TACAAGTGTAACATCAAATG+TGG + chr8_1:11830563-11830582 Msa1178940:intron 30.0%
! TAAACAACCTAGCATTTTCA+AGG - chr8_1:11830973-11830992 None:intergenic 30.0%
! CAGAGACAATAAAGTATCAT+AGG - chr8_1:11831104-11831123 None:intergenic 30.0%
! ACTTAATTGATGATTCCTTC+TGG + chr8_1:11831132-11831151 Msa1178940:intron 30.0%
GAAGCTAAATCTGAATTATG+AGG + chr8_1:11831244-11831263 Msa1178940:five_prime_UTR 30.0%
!! TAAGGGTTTTTGTAGTCTTA+TGG + chr8_1:11831400-11831419 Msa1178940:intron 30.0%
CTTTCTACCGTATTAACTTA+TGG + chr8_1:11831423-11831442 Msa1178940:intron 30.0%
TTCTACCGTATTAACTTATG+GGG + chr8_1:11831425-11831444 Msa1178940:intron 30.0%
! TTTTGAATTGCTTCTTGTCT+AGG + chr8_1:11831688-11831707 Msa1178940:intron 30.0%
AATATTGACGTGGAAAGTTA+AGG + chr8_1:11831952-11831971 Msa1178940:intron 30.0%
ATATTGACGTGGAAAGTTAA+GGG + chr8_1:11831953-11831972 Msa1178940:intron 30.0%
! ATATGTGCATTTAACTTCAG+TGG + chr8_1:11832152-11832171 Msa1178940:intron 30.0%
CACATCATATCACTTTACAT+CGG + chr8_1:11832309-11832328 Msa1178940:intron 30.0%
TCACTTTGCATTTATGATAG+TGG + chr8_1:11832467-11832486 Msa1178940:intron 30.0%
ATTGCTTACTTAATATGGGA+CGG + chr8_1:11832576-11832595 Msa1178940:intron 30.0%
ACCTTGGAGAATATTATTAC+GGG + chr8_1:11833145-11833164 Msa1178940:intron 30.0%
! TCGAATCTTCGAGAATATTT+TGG + chr8_1:11833172-11833191 Msa1178940:intron 30.0%
! CGAATCTTCGAGAATATTTT+GGG + chr8_1:11833173-11833192 Msa1178940:intron 30.0%
ATCGAACATGAAATCTCAAA+AGG + chr8_1:11833199-11833218 Msa1178940:intron 30.0%
TGTAAAGACTTTAGCTAGTA+AGG - chr8_1:11833716-11833735 None:intergenic 30.0%
TCAAATTGAAACAGAAAGTG+TGG - chr8_1:11834023-11834042 None:intergenic 30.0%
CGAAAAAACAAATGGGAATT+TGG - chr8_1:11834080-11834099 None:intergenic 30.0%
ATAAGACCAAATCACATATG+AGG - chr8_1:11834291-11834310 None:intergenic 30.0%
AAACAATCAATTTGGAAACC+AGG - chr8_1:11834478-11834497 None:intergenic 30.0%
! AGTTAGATTTTCTGACATAG+AGG - chr8_1:11834627-11834646 None:intergenic 30.0%
TCTTGAAATTGAAAACCTAG+TGG - chr8_1:11834692-11834711 None:intergenic 30.0%
ATTGAGTAGAAGAAGAATCT+TGG - chr8_1:11834715-11834734 None:intergenic 30.0%
TTAAGAGTCACACAATTGAT+GGG + chr8_1:11835142-11835161 Msa1178940:intron 30.0%
! CCACTTATAAACTCATTTTC+AGG - chr8_1:11835174-11835193 None:intergenic 30.0%
CCTGAAAATGAGTTTATAAG+TGG + chr8_1:11835171-11835190 Msa1178940:intron 30.0%
TAATTCAACCCCTACAAAAT+AGG - chr8_1:11835219-11835238 None:intergenic 30.0%
! TATTTTGTAGGGGTTGAATT+AGG + chr8_1:11835218-11835237 Msa1178940:intron 30.0%
TGAGTACTCTCTTTGAATTT+GGG - chr8_1:11835249-11835268 None:intergenic 30.0%
AACTAGTATTAGAAAGCTGT+TGG + chr8_1:11835414-11835433 Msa1178940:intron 30.0%
TATTGATGAGTATTTGCTCT+AGG + chr8_1:11835473-11835492 Msa1178940:intron 30.0%
TTGTTATACTGGACAGAAAT+TGG - chr8_1:11835500-11835519 None:intergenic 30.0%
GTATATATGTGTTTGTGTGT+TGG + chr8_1:11835648-11835667 Msa1178940:intron 30.0%
! GTAGCGGAATTTGAATAAAT+TGG - chr8_1:11835801-11835820 None:intergenic 30.0%
! TTTCTTATAGTTTGCCTTTC+AGG + chr8_1:11835875-11835894 Msa1178940:intron 30.0%
AACTTAACACATACATAAGG+CGG - chr8_1:11836117-11836136 None:intergenic 30.0%
CCAAACTTAACACATACATA+AGG - chr8_1:11836120-11836139 None:intergenic 30.0%
CCTTATGTATGTGTTAAGTT+TGG + chr8_1:11836117-11836136 Msa1178940:intron 30.0%
AAAAAGAGAAACACCTTTGT+AGG + chr8_1:11836199-11836218 Msa1178940:intron 30.0%
! AATAGCATGTTTTCCTACAA+AGG - chr8_1:11836215-11836234 None:intergenic 30.0%
TACTCAAACGAACAACTATA+CGG - chr8_1:11836299-11836318 None:intergenic 30.0%
! GCTAAGTAAAAGGCATAAAT+AGG - chr8_1:11836341-11836360 None:intergenic 30.0%
! CTTCTAAGAAGCTAAGTAAA+AGG - chr8_1:11836351-11836370 None:intergenic 30.0%
AGAACAAACTCGTCAAAAAT+CGG + chr8_1:11836642-11836661 Msa1178940:CDS 30.0%
! CAAGTAGAAAAGTATAGAGA+TGG + chr8_1:11836909-11836928 Msa1178940:CDS 30.0%
ACATAATTCAAAATGAGCCA+AGG - chr8_1:11837164-11837183 None:intergenic 30.0%
TTTGTAGCCATGAAAATGTT+TGG + chr8_1:11837252-11837271 Msa1178940:three_prime_UTR 30.0%
! TCTTTAGCCAAACATTTTCA+TGG - chr8_1:11837262-11837281 None:intergenic 30.0%
! TTGATTTTCAACAAGCCATT+TGG - chr8_1:11837341-11837360 None:intergenic 30.0%
!! ATGGCTTGTTGAAAATCAAA+TGG + chr8_1:11837342-11837361 Msa1178940:three_prime_UTR 30.0%
TGCCAAATTTCAGTTTGATG+TGG + chr8_1:11828817-11828836 Msa1178940:five_prime_UTR 35.0%
TGACTATCTTTACCAGTACA+AGG + chr8_1:11828858-11828877 Msa1178940:five_prime_UTR 35.0%
AGGAGTTTGAATGCATTATG+GGG + chr8_1:11828901-11828920 Msa1178940:five_prime_UTR 35.0%
!! CTGAAGTATTGATGCAAAAG+TGG + chr8_1:11828935-11828954 Msa1178940:five_prime_UTR 35.0%
!!! CCTTTTTTCTTCCATTGTCA+TGG - chr8_1:11829182-11829201 None:intergenic 35.0%
CCATGACAATGGAAGAAAAA+AGG + chr8_1:11829179-11829198 Msa1178940:five_prime_UTR 35.0%
AAGCAGTGTCCTTAAATTGT+TGG - chr8_1:11829307-11829326 None:intergenic 35.0%
TGGAAGCAGAAAATAACATG+TGG - chr8_1:11829573-11829592 None:intergenic 35.0%
TGGGCACACTAAGAAATTAA+AGG - chr8_1:11829605-11829624 None:intergenic 35.0%
GTATCAAGAATCGTAATGCT+TGG + chr8_1:11829804-11829823 Msa1178940:intron 35.0%
TGTGTTAGTATCACATTGAG+TGG + chr8_1:11830045-11830064 Msa1178940:intron 35.0%
TGAGTGGAAAAGTCATTGTT+TGG + chr8_1:11830061-11830080 Msa1178940:intron 35.0%
! TTTTCATCTCCACACATAGT+TGG + chr8_1:11830347-11830366 Msa1178940:intron 35.0%
GCAAGCATATAATGCATGAA+AGG - chr8_1:11830693-11830712 None:intergenic 35.0%
GGTGAAGCAAATACCTAATA+AGG - chr8_1:11830842-11830861 None:intergenic 35.0%
GCATATTACAATCAACACAG+AGG - chr8_1:11830863-11830882 None:intergenic 35.0%
ACTTCTCAACTGTACCATTA+AGG + chr8_1:11830939-11830958 Msa1178940:five_prime_UTR 35.0%
CTTCTCAACTGTACCATTAA+GGG + chr8_1:11830940-11830959 Msa1178940:five_prime_UTR 35.0%
ATGAGTTCCTTGAAAATGCT+AGG + chr8_1:11830963-11830982 Msa1178940:five_prime_UTR 35.0%
CATATTGCAGAATACATCAG+CGG + chr8_1:11831002-11831021 Msa1178940:five_prime_UTR 35.0%
! TTCTTTTGTGGCATACGATT+TGG + chr8_1:11831077-11831096 Msa1178940:intron 35.0%
! TCCAGTTTCAGAGTCAATTT+TGG - chr8_1:11831318-11831337 None:intergenic 35.0%
TATGAAACAGACCTGAAAAC+TGG - chr8_1:11831576-11831595 None:intergenic 35.0%
!!! AGTTTTCAGGTCTGTTTCAT+AGG + chr8_1:11831575-11831594 Msa1178940:intron 35.0%
CAATACTGTAACTAGTAGTC+TGG + chr8_1:11831603-11831622 Msa1178940:intron 35.0%
CGATGTAAAGTGATATGATG+TGG - chr8_1:11832311-11832330 None:intergenic 35.0%
GTGGTAAATGAGCTTTACAA+AGG - chr8_1:11832796-11832815 None:intergenic 35.0%
TCCCGTAATAATATTCTCCA+AGG - chr8_1:11833149-11833168 None:intergenic 35.0%
! TACAGGTGTAATTTTCGCTA+AGG + chr8_1:11833380-11833399 Msa1178940:intron 35.0%
GAGTAATAGGGAATTGTGAA+AGG + chr8_1:11833831-11833850 Msa1178940:intron 35.0%
TAATAGGGAATTGTGAAAGG+TGG + chr8_1:11833834-11833853 Msa1178940:intron 35.0%
GAGAGAGTCTATATCGTTTA+AGG + chr8_1:11833906-11833925 Msa1178940:intron 35.0%
AGTACTCTTTGTGTACTGTA+TGG - chr8_1:11833987-11834006 None:intergenic 35.0%
!! ACACAAAGAGTACTAGAAAG+TGG + chr8_1:11833993-11834012 Msa1178940:intron 35.0%
!! CACAAAGAGTACTAGAAAGT+GGG + chr8_1:11833994-11834013 Msa1178940:intron 35.0%
!! ACAAAGAGTACTAGAAAGTG+GGG + chr8_1:11833995-11834014 Msa1178940:intron 35.0%
AACTTGACATGCATAGATTC+TGG + chr8_1:11834043-11834062 Msa1178940:intron 35.0%
CATCTTCCTCATATGTGATT+TGG + chr8_1:11834282-11834301 Msa1178940:intron 35.0%
AAATCTGTATAGCTAAGTCC+TGG + chr8_1:11834457-11834476 Msa1178940:intron 35.0%
!! TAGGTAAGCTTTGAATGTAG+TGG + chr8_1:11834543-11834562 Msa1178940:intron 35.0%
TCTTCTTCTACTCAATCAAC+TGG + chr8_1:11834719-11834738 Msa1178940:CDS 35.0%
! ATCTTATCTGGAAGTTGGTT+CGG + chr8_1:11834748-11834767 Msa1178940:CDS 35.0%
ACAAGAGTCAAATGCAGATA+TGG - chr8_1:11834808-11834827 None:intergenic 35.0%
AGAAAACATGATATCCACGA+AGG - chr8_1:11835042-11835061 None:intergenic 35.0%
GTTAAGAGTCACACAATTGA+TGG + chr8_1:11835141-11835160 Msa1178940:intron 35.0%
! ACCTTACAAGCCTATTTTGT+AGG + chr8_1:11835206-11835225 Msa1178940:intron 35.0%
! CCTTACAAGCCTATTTTGTA+GGG + chr8_1:11835207-11835226 Msa1178940:intron 35.0%
! CTTACAAGCCTATTTTGTAG+GGG + chr8_1:11835208-11835227 Msa1178940:intron 35.0%
GTGAGTACTCTCTTTGAATT+TGG - chr8_1:11835250-11835269 None:intergenic 35.0%
AAGCAGAGGAATTGTTATAC+TGG - chr8_1:11835511-11835530 None:intergenic 35.0%
! ACAGTAAGTGTTGTCAATTG+TGG + chr8_1:11835681-11835700 Msa1178940:intron 35.0%
ACATTATTCCGTGATCCATA+TGG - chr8_1:11835954-11835973 None:intergenic 35.0%
GTTCGTTTGAGTAAATGTTG+CGG + chr8_1:11836306-11836325 Msa1178940:intron 35.0%
TCAAGTAACTCAATGGCATT+TGG - chr8_1:11836411-11836430 None:intergenic 35.0%
TGGTACATCAAGTAACTCAA+TGG - chr8_1:11836418-11836437 None:intergenic 35.0%
TTGAGTTACTTGATGTACCA+TGG + chr8_1:11836418-11836437 Msa1178940:intron 35.0%
CATGCTATAAAAATCTTGCC+AGG + chr8_1:11836478-11836497 Msa1178940:intron 35.0%
TCACAAAGATTAAGAGGCAA+AGG - chr8_1:11836545-11836564 None:intergenic 35.0%
GGTTCTTCACAAAGATTAAG+AGG - chr8_1:11836551-11836570 None:intergenic 35.0%
TGCTTTGCATTCACGTATAT+TGG - chr8_1:11836572-11836591 None:intergenic 35.0%
AAAGATTAAAGCCATGGTCT+TGG - chr8_1:11836836-11836855 None:intergenic 35.0%
TTAATCTTTCCACCACTACT+CGG + chr8_1:11836847-11836866 Msa1178940:CDS 35.0%
!! ATTAGAAGCACTTGTGACAT+CGG - chr8_1:11836955-11836974 None:intergenic 35.0%
ACAAATCCTGCATATGAGAA+GGG - chr8_1:11837028-11837047 None:intergenic 35.0%
CTAATCATGTCTCTCACATA+AGG - chr8_1:11837100-11837119 None:intergenic 35.0%
! AATGCTTGTTGCATTCCATT+GGG + chr8_1:11837131-11837150 Msa1178940:three_prime_UTR 35.0%
! TCAAATGGTGTTGAATGTGT+AGG + chr8_1:11837357-11837376 Msa1178940:three_prime_UTR 35.0%
GTTTGATGTGGAAACTACTC+TGG + chr8_1:11828829-11828848 Msa1178940:five_prime_UTR 40.0%
TTGTGCATAATGCCTTGTAC+TGG - chr8_1:11828873-11828892 None:intergenic 40.0%
TGAAGAACTCAATCGCTTGA+AGG + chr8_1:11828969-11828988 Msa1178940:five_prime_UTR 40.0%
CTGCTTTGCACCTGATTTAA+AGG - chr8_1:11829120-11829139 None:intergenic 40.0%
ATCAGGTGCAAAGCAGAATA+TGG + chr8_1:11829124-11829143 Msa1178940:five_prime_UTR 40.0%
GCAAAGCAGAATATGGTTGA+TGG + chr8_1:11829131-11829150 Msa1178940:five_prime_UTR 40.0%
!! GCAGAATATGGTTGATGGAT+TGG + chr8_1:11829136-11829155 Msa1178940:five_prime_UTR 40.0%
CACTGCACTCCAACAATTTA+AGG + chr8_1:11829295-11829314 Msa1178940:five_prime_UTR 40.0%
CAAACTCATGAGTGCATCAA+TGG - chr8_1:11829436-11829455 None:intergenic 40.0%
CATTGATGCACTCATGAGTT+TGG + chr8_1:11829434-11829453 Msa1178940:five_prime_UTR 40.0%
CGCAACTACACAAAATTGGT+GGG - chr8_1:11829947-11829966 None:intergenic 40.0%
! CCACCAATTTTGTGTAGTTG+CGG + chr8_1:11829945-11829964 Msa1178940:intron 40.0%
AGACCGCAACTACACAAAAT+TGG - chr8_1:11829951-11829970 None:intergenic 40.0%
! TCTCCACACATAGTTGGTAT+TGG + chr8_1:11830353-11830372 Msa1178940:intron 40.0%
! CTCCACACATAGTTGGTATT+GGG + chr8_1:11830354-11830373 Msa1178940:intron 40.0%
! TCCACACATAGTTGGTATTG+GGG + chr8_1:11830355-11830374 Msa1178940:intron 40.0%
ATTCTCGATGATCCATTCGT+TGG + chr8_1:11830896-11830915 Msa1178940:five_prime_UTR 40.0%
TCAACTCGTTTACCAACGAA+TGG - chr8_1:11830911-11830930 None:intergenic 40.0%
TCAAGGAACTCATCCCTTAA+TGG - chr8_1:11830956-11830975 None:intergenic 40.0%
AATACATCAGCGGTTTGACA+TGG + chr8_1:11831012-11831031 Msa1178940:five_prime_UTR 40.0%
ATACATCAGCGGTTTGACAT+GGG + chr8_1:11831013-11831032 Msa1178940:five_prime_UTR 40.0%
! ATTGATGATTCCTTCTGGTC+TGG + chr8_1:11831137-11831156 Msa1178940:intron 40.0%
ATTATGAGGAAGCTGAGAGA+TGG + chr8_1:11831258-11831277 Msa1178940:five_prime_UTR 40.0%
!! GCCAAAATTGACTCTGAAAC+TGG + chr8_1:11831314-11831333 Msa1178940:five_prime_UTR 40.0%
TGAAACTGGAACCGTTATCA+TGG + chr8_1:11831328-11831347 Msa1178940:five_prime_UTR 40.0%
GAGTGCCCCATAAGTTAATA+CGG - chr8_1:11831433-11831452 None:intergenic 40.0%
TACAAGTGTCAGTGTTGTGT+GGG - chr8_1:11831486-11831505 None:intergenic 40.0%
TTAGGTAGACTAGTAGACTG+AGG + chr8_1:11831806-11831825 Msa1178940:intron 40.0%
!! TGAGGAGAGTGTTTGTTACT+AGG + chr8_1:11831824-11831843 Msa1178940:intron 40.0%
AAGTGCGTCTATTACATCAG+TGG + chr8_1:11832216-11832235 Msa1178940:intron 40.0%
TCTATTACATCAGTGGAAGC+AGG + chr8_1:11832223-11832242 Msa1178940:intron 40.0%
GACTGAACTCAGGATTACTA+GGG - chr8_1:11832701-11832720 None:intergenic 40.0%
ACTAAGCAATTGAGCTCAAG+TGG - chr8_1:11832815-11832834 None:intergenic 40.0%
AATGTGATAGAACCGAACCT+TGG + chr8_1:11833129-11833148 Msa1178940:intron 40.0%
TTCAGCAGCTTGAACTTGAA+GGG - chr8_1:11833938-11833957 None:intergenic 40.0%
! GGAAAACAATGAAGCACTCA+TGG + chr8_1:11834564-11834583 Msa1178940:exon 40.0%
TGCAACAAGTCTAAACCACT+AGG + chr8_1:11834674-11834693 Msa1178940:CDS 40.0%
AACTGGTCGTCAATCTTATC+TGG + chr8_1:11834736-11834755 Msa1178940:CDS 40.0%
CGTCAATCTTATCTGGAAGT+TGG + chr8_1:11834743-11834762 Msa1178940:CDS 40.0%
! TTTTCTCTCTTCTACCTTCG+TGG + chr8_1:11835025-11835044 Msa1178940:intron 40.0%
!! ATGTCTAGTCTTGGATGCAA+GGG + chr8_1:11835112-11835131 Msa1178940:intron 40.0%
CCCTACAAAATAGGCTTGTA+AGG - chr8_1:11835210-11835229 None:intergenic 40.0%
CTCTGCATTGAATACCGTAT+AGG + chr8_1:11835365-11835384 Msa1178940:intron 40.0%
TGTTCAACACTTAGCGAAAC+CGG + chr8_1:11835530-11835549 Msa1178940:CDS 40.0%
AGCGACACTATAACATTGGA+AGG - chr8_1:11835726-11835745 None:intergenic 40.0%
CGATAGCGACACTATAACAT+TGG - chr8_1:11835730-11835749 None:intergenic 40.0%
TAGAGTATGTCTCAGCATGA+GGG - chr8_1:11835914-11835933 None:intergenic 40.0%
TTAGAGTATGTCTCAGCATG+AGG - chr8_1:11835915-11835934 None:intergenic 40.0%
CATGCTGAGACATACTCTAA+TGG + chr8_1:11835915-11835934 Msa1178940:CDS 40.0%
GTGATAGACAGAATTCACCA+TGG - chr8_1:11836438-11836457 None:intergenic 40.0%
GTCTACGTCTCATAATAGCA+TGG - chr8_1:11836598-11836617 None:intergenic 40.0%
TGGTGGAAAGATTAAAGCCA+TGG - chr8_1:11836842-11836861 None:intergenic 40.0%
TGGAAATGTGCTGGAATCAA+GGG + chr8_1:11836881-11836900 Msa1178940:CDS 40.0%
TGAAGTCGGATTCATGTTGT+TGG - chr8_1:11836992-11837011 None:intergenic 40.0%
! GTAACCACATGATCTGAAGT+CGG - chr8_1:11837006-11837025 None:intergenic 40.0%
GACAAATCCTGCATATGAGA+AGG - chr8_1:11837029-11837048 None:intergenic 40.0%
TCTCTCACATAAGGACAGAT+AGG - chr8_1:11837091-11837110 None:intergenic 40.0%
! CAATGCTTGTTGCATTCCAT+TGG + chr8_1:11837130-11837149 Msa1178940:three_prime_UTR 40.0%
!! TTTTGTCTAGGACTGCCAAA+TGG + chr8_1:11837323-11837342 Msa1178940:three_prime_UTR 40.0%
GAATGCATTATGGGGAAAGC+TGG + chr8_1:11828909-11828928 Msa1178940:five_prime_UTR 45.0%
TAGCATGACAAGCAAGAGTG+TGG - chr8_1:11829042-11829061 None:intergenic 45.0%
GATGCACTCATGAGTTTGGA+AGG + chr8_1:11829438-11829457 Msa1178940:five_prime_UTR 45.0%
CCGCAACTACACAAAATTGG+TGG - chr8_1:11829948-11829967 None:intergenic 45.0%
TTGTGTAGTTGCGGTCTTGA+TGG + chr8_1:11829954-11829973 Msa1178940:intron 45.0%
! ACACATAGTTGGTATTGGGG+CGG + chr8_1:11830358-11830377 Msa1178940:intron 45.0%
TACATCAGCGGTTTGACATG+GGG + chr8_1:11831014-11831033 Msa1178940:five_prime_UTR 45.0%
GTAAAGTAGACCAGACCAGA+AGG - chr8_1:11831150-11831169 None:intergenic 45.0%
TGGATTGTGAATCTCATCCG+TGG + chr8_1:11831278-11831297 Msa1178940:five_prime_UTR 45.0%
TCAGTGTTGTGTGGGATACT+TGG - chr8_1:11831478-11831497 None:intergenic 45.0%
CTACAAGTGTCAGTGTTGTG+TGG - chr8_1:11831487-11831506 None:intergenic 45.0%
CTGGTGTCTTTGTGTCAGTT+CGG + chr8_1:11831542-11831561 Msa1178940:intron 45.0%
TCAGCTGATAGACCACACAA+AGG + chr8_1:11831716-11831735 Msa1178940:intron 45.0%
GAGTGACCAACTTGTAAGTG+CGG - chr8_1:11831752-11831771 None:intergenic 45.0%
TCTTGAACAAGCACAAGCTC+AGG + chr8_1:11831776-11831795 Msa1178940:intron 45.0%
CAACCTGATGTGAAAGGATG+TGG + chr8_1:11832280-11832299 Msa1178940:intron 45.0%
AGTCCACATCCTTTCACATC+AGG - chr8_1:11832286-11832305 None:intergenic 45.0%
GCTTACTTAATATGGGACGG+AGG + chr8_1:11832579-11832598 Msa1178940:intron 45.0%
TAAGACTGGACGGAGTTCTA+AGG + chr8_1:11832666-11832685 Msa1178940:intron 45.0%
! AAGACTGGACGGAGTTCTAA+GGG + chr8_1:11832667-11832686 Msa1178940:intron 45.0%
CGACTGAACTCAGGATTACT+AGG - chr8_1:11832702-11832721 None:intergenic 45.0%
TAATCCTGAGTTCAGTCGTG+AGG + chr8_1:11832704-11832723 Msa1178940:intron 45.0%
TTTACCTCACGACTGAACTC+AGG - chr8_1:11832711-11832730 None:intergenic 45.0%
GTCGTGAGGTAAAGATAGTC+TGG + chr8_1:11832718-11832737 Msa1178940:intron 45.0%
TATTTCCCTCGAACCCACTT+GGG - chr8_1:11832884-11832903 None:intergenic 45.0%
TTATTTCCCTCGAACCCACT+TGG - chr8_1:11832885-11832904 None:intergenic 45.0%
!! AATGAGTGTCTTTGGGACGT+TGG + chr8_1:11833333-11833352 Msa1178940:intron 45.0%
GGGAATTGTGAAAGGTGGTA+TGG + chr8_1:11833839-11833858 Msa1178940:intron 45.0%
AAAGGTGGTATGGTGAGAGA+GGG + chr8_1:11833849-11833868 Msa1178940:intron 45.0%
GTTCAGCAGCTTGAACTTGA+AGG - chr8_1:11833939-11833958 None:intergenic 45.0%
! AATGAAGCACTCATGGCCAT+GGG + chr8_1:11834571-11834590 Msa1178940:exon 45.0%
!! GAAGTTGGTTCGGAACAATC+CGG + chr8_1:11834758-11834777 Msa1178940:CDS 45.0%
CTAAAATCTGTTGGGCCACT+CGG + chr8_1:11835077-11835096 Msa1178940:intron 45.0%
TAAAATCTGTTGGGCCACTC+GGG + chr8_1:11835078-11835097 Msa1178940:intron 45.0%
TGCATCCAAGACTAGACATC+TGG - chr8_1:11835111-11835130 None:intergenic 45.0%
!! GATGTCTAGTCTTGGATGCA+AGG + chr8_1:11835111-11835130 Msa1178940:intron 45.0%
!! TGTCTAGTCTTGGATGCAAG+GGG + chr8_1:11835113-11835132 Msa1178940:intron 45.0%
GTCACACAATTGATGGGATG+TGG + chr8_1:11835148-11835167 Msa1178940:intron 45.0%
!! GCTAAGTGTTGAACAAGCAG+AGG - chr8_1:11835525-11835544 None:intergenic 45.0%
!! AGAGTGTGGAAGGTATCATC+AGG + chr8_1:11835558-11835577 Msa1178940:CDS 45.0%
TACTTTGCCTCCTTCTCAAC+TGG + chr8_1:11835604-11835623 Msa1178940:CDS 45.0%
TTGTGATCCAGTTGAGAAGG+AGG - chr8_1:11835614-11835633 None:intergenic 45.0%
TGGTTGTGATCCAGTTGAGA+AGG - chr8_1:11835617-11835636 None:intergenic 45.0%
ACTAAAACGCTGTAGCGTAG+CGG - chr8_1:11835817-11835836 None:intergenic 45.0%
GAATGCAACATGAGCCTGAA+AGG - chr8_1:11835892-11835911 None:intergenic 45.0%
ATCCATATGGAGCTGCTAGT+AGG - chr8_1:11835941-11835960 None:intergenic 45.0%
TAGCAGCTCCATATGGATCA+CGG + chr8_1:11835943-11835962 Msa1178940:CDS 45.0%
CGTTTGAGTAAATGTTGCGG+TGG + chr8_1:11836309-11836328 Msa1178940:intron 45.0%
GTTAATCATGCTGAGCCAGT+AGG + chr8_1:11836500-11836519 Msa1178940:CDS 45.0%
AAGAGGCAAAGGAATCCGAA+CGG - chr8_1:11836534-11836553 None:intergenic 45.0%
CTCTCTTCAATGCATGCAGA+TGG - chr8_1:11836773-11836792 None:intergenic 45.0%
CATGCATTGAAGAGAGCTAG+AGG + chr8_1:11836777-11836796 Msa1178940:CDS 45.0%
ACCAAAAAGCTCCAAGACCA+TGG + chr8_1:11836822-11836841 Msa1178940:CDS 45.0%
GATTCCAGCACATTTCCACT+CGG - chr8_1:11836879-11836898 None:intergenic 45.0%
GTGGAAATGTGCTGGAATCA+AGG + chr8_1:11836880-11836899 Msa1178940:CDS 45.0%
ACTTGTGACATCGGAACAAG+TGG - chr8_1:11836946-11836965 None:intergenic 45.0%
GAATCCGACTTCAGATCATG+TGG + chr8_1:11836999-11837018 Msa1178940:CDS 45.0%
TGGTTACCCTTCTCATATGC+AGG + chr8_1:11837019-11837038 Msa1178940:CDS 45.0%
CTCACATAAGGACAGATAGG+CGG - chr8_1:11837088-11837107 None:intergenic 45.0%
TTCCATTGGGAAGTCATCCT+TGG + chr8_1:11837144-11837163 Msa1178940:three_prime_UTR 45.0%
!! TATTAATAAATAATTAATGT+TGG + chr8_1:11829066-11829085 Msa1178940:intron 5.0%
!!! TAATTTTTTCTTTTTTTAAA+TGG - chr8_1:11832099-11832118 None:intergenic 5.0%
!!! AAATTATCAAATTTTAAAAT+AGG - chr8_1:11832973-11832992 None:intergenic 5.0%
!!! TTTTTTTTTTTAATGATTTT+TGG + chr8_1:11834246-11834265 Msa1178940:intron 5.0%
! CTGATGGTGCGTGAAGAGAA+CGG + chr8_1:11829259-11829278 Msa1178940:five_prime_UTR 50.0%
GCCCCAATACCAACTATGTG+TGG - chr8_1:11830359-11830378 None:intergenic 50.0%
! TTGGTATTGGGGCGGATTTG+AGG + chr8_1:11830366-11830385 Msa1178940:intron 50.0%
TCTTGACCTGTGCTATCGCA+CGG - chr8_1:11830800-11830819 None:intergenic 50.0%
!! TGGCATCAAGCTTTGAGCCA+CGG - chr8_1:11831298-11831317 None:intergenic 50.0%
! CGGTGTAGTGTCCAGTTTTC+AGG + chr8_1:11831562-11831581 Msa1178940:intron 50.0%
GACCACACAAAGGCCCTTAA+CGG + chr8_1:11831726-11831745 Msa1178940:intron 50.0%
CTTGTAAGTGCGGCCGTTAA+GGG - chr8_1:11831742-11831761 None:intergenic 50.0%
ACTTGTAAGTGCGGCCGTTA+AGG - chr8_1:11831743-11831762 None:intergenic 50.0%
TAACGGCCGCACTTACAAGT+TGG + chr8_1:11831743-11831762 Msa1178940:intron 50.0%
CAGTCGCAACCTGATGTGAA+AGG + chr8_1:11832274-11832293 Msa1178940:intron 50.0%
!! AGACTGGACGGAGTTCTAAG+GGG + chr8_1:11832668-11832687 Msa1178940:intron 50.0%
TATCATCAGGCCAACCCAAG+TGG + chr8_1:11832867-11832886 Msa1178940:intron 50.0%
ATCATCAGGCCAACCCAAGT+GGG + chr8_1:11832868-11832887 Msa1178940:intron 50.0%
GAAAGGTGGTATGGTGAGAG+AGG + chr8_1:11833848-11833867 Msa1178940:intron 50.0%
! CAATGAAGCACTCATGGCCA+TGG + chr8_1:11834570-11834589 Msa1178940:exon 50.0%
! ATGAAGCACTCATGGCCATG+GGG + chr8_1:11834572-11834591 Msa1178940:CDS 50.0%
GATTCAGAACAAGTCCCCCA+TGG - chr8_1:11834590-11834609 None:intergenic 50.0%
! TGGGGGACTTGTTCTGAATC+TGG + chr8_1:11834590-11834609 Msa1178940:CDS 50.0%
ACGCTCCAGATGTCTAGTCT+TGG + chr8_1:11835103-11835122 Msa1178940:intron 50.0%
TCAACACTTAGCGAAACCGG+CGG + chr8_1:11835533-11835552 Msa1178940:CDS 50.0%
GGTATCATCAGGTCATCTGC+AGG + chr8_1:11835569-11835588 Msa1178940:CDS 50.0%
CTGGCTCAGCATGATTAACC+TGG - chr8_1:11836499-11836518 None:intergenic 50.0%
AGAGGCAAAGGAATCCGAAC+GGG - chr8_1:11836533-11836552 None:intergenic 50.0%
TGGCGCGACTCATGTAGATA+TGG - chr8_1:11836753-11836772 None:intergenic 50.0%
TTGAAGAGAGCTAGAGGCTC+TGG + chr8_1:11836783-11836802 Msa1178940:CDS 50.0%
!! GCCATGGTCTTGGAGCTTTT+TGG - chr8_1:11836826-11836845 None:intergenic 50.0%
GAATCCGAGTGGAAATGTGC+TGG + chr8_1:11836872-11836891 Msa1178940:CDS 50.0%
GACATCGGAACAAGTGGTTG+TGG - chr8_1:11836940-11836959 None:intergenic 50.0%
AGCCAAGGATGACTTCCCAA+TGG - chr8_1:11837149-11837168 None:intergenic 50.0%
! GATTGGTCGTGCGCAGATAG+AGG + chr8_1:11828781-11828800 Msa1178940:five_prime_UTR 55.0%
ATAGACCCGTGCGATAGCAC+AGG + chr8_1:11830791-11830810 Msa1178940:intron 55.0%
CTTGACCTGTGCTATCGCAC+GGG - chr8_1:11830799-11830818 None:intergenic 55.0%
ACAAGCTCAGGCAGCTCGTT+AGG + chr8_1:11831788-11831807 Msa1178940:intron 55.0%
TGGCCAAGAATCGTTCCACC+CGG + chr8_1:11832738-11832757 Msa1178940:intron 55.0%
TTCCCGGGTGGAACGATTCT+TGG - chr8_1:11832744-11832763 None:intergenic 55.0%
TTCCACCCGGGAATCGAACT+CGG + chr8_1:11832751-11832770 Msa1178940:intron 55.0%
TGAACCCGAGTTCGATTCCC+GGG - chr8_1:11832759-11832778 None:intergenic 55.0%
GTGAACCCGAGTTCGATTCC+CGG - chr8_1:11832760-11832779 None:intergenic 55.0%
! TGAAGCACTCATGGCCATGG+GGG + chr8_1:11834573-11834592 Msa1178940:CDS 55.0%
ACCTTCCACACTCTTTCCGC+CGG - chr8_1:11835552-11835571 None:intergenic 55.0%
CAGGTCATCTGCAGGAAGTC+AGG + chr8_1:11835577-11835596 Msa1178940:CDS 55.0%
GGCCTACTAGCAGCTCCATA+TGG + chr8_1:11835936-11835955 Msa1178940:CDS 55.0%
CAGTAGGAATGCCTCCCGTT+CGG + chr8_1:11836516-11836535 Msa1178940:CDS 55.0%
! AAGAGAGCTAGAGGCTCTGG+TGG + chr8_1:11836786-11836805 Msa1178940:CDS 55.0%
ACTCGGATTCAGCCGAGTAG+TGG - chr8_1:11836862-11836881 None:intergenic 55.0%
ACTACTCGGCTGAATCCGAG+TGG + chr8_1:11836861-11836880 Msa1178940:CDS 55.0%
CAGGATTTGTCAGCCGATGC+CGG + chr8_1:11837038-11837057 Msa1178940:CDS 55.0%
GGCCGTTAAGGGCCTTTGTG+TGG - chr8_1:11831731-11831750 None:intergenic 60.0%
GGCCAAGAATCGTTCCACCC+GGG + chr8_1:11832739-11832758 Msa1178940:intron 60.0%
TCCACCCGGGAATCGAACTC+GGG + chr8_1:11832752-11832771 Msa1178940:intron 60.0%
! GCCAACCCAAGTGGGTTCGA+GGG + chr8_1:11832876-11832895 Msa1178940:intron 60.0%
TCCCTCGAACCCACTTGGGT+TGG - chr8_1:11832880-11832899 None:intergenic 60.0%
CGAAACCGGCGGAAAGAGTG+TGG + chr8_1:11835544-11835563 Msa1178940:CDS 60.0%
! ACCGGCGGAAAGAGTGTGGA+AGG + chr8_1:11835548-11835567 Msa1178940:CDS 60.0%
!! CGAACGGGAGGCATTCCTAC+TGG - chr8_1:11836518-11836537 None:intergenic 60.0%
GGCAAAGGAATCCGAACGGG+AGG - chr8_1:11836530-11836549 None:intergenic 60.0%
CGGATTCAGCCGAGTAGTGG+TGG - chr8_1:11836859-11836878 None:intergenic 60.0%
GATTTGTCAGCCGATGCCGG+TGG + chr8_1:11837041-11837060 Msa1178940:CDS 60.0%
ATTCCGACCACCACCACCAC+CGG - chr8_1:11837060-11837079 None:intergenic 60.0%
ACCCGAGTTCGATTCCCGGG+TGG - chr8_1:11832756-11832775 None:intergenic 65.0%
! GGCCAACCCAAGTGGGTTCG+AGG + chr8_1:11832875-11832894 Msa1178940:intron 65.0%
! CATCTGGAGCGTGACCCGAG+TGG - chr8_1:11835095-11835114 None:intergenic 65.0%
TTGTCAGCCGATGCCGGTGG+TGG + chr8_1:11837044-11837063 Msa1178940:CDS 65.0%
ACCACCACCACCACCGGCAT+CGG - chr8_1:11837054-11837073 None:intergenic 65.0%
!! ATGCCGGTGGTGGTGGTGGT+CGG + chr8_1:11837054-11837073 Msa1178940:CDS 65.0%
! TCAGCCGATGCCGGTGGTGG+TGG + chr8_1:11837047-11837066 Msa1178940:CDS 70.0%
!! GCCGATGCCGGTGGTGGTGG+TGG + chr8_1:11837050-11837069 Msa1178940:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 11828751 11837387 11828751 ID=Msa1178940;Name=Msa1178940
chr8_1 mRNA 11828751 11837387 11828751 ID=Msa1178940-mRNA-1;Parent=Msa1178940;Name=Msa1178940-mRNA-1;_AED=0.25;_eAED=0.25;_QI=920|0.87|0.88|1|0.75|0.66|9|281|318
chr8_1 exon 11828751 11829008 11828751 ID=Msa1178940-mRNA-1:exon:4234;Parent=Msa1178940-mRNA-1
chr8_1 exon 11829105 11829459 11829105 ID=Msa1178940-mRNA-1:exon:4235;Parent=Msa1178940-mRNA-1
chr8_1 exon 11830893 11831035 11830893 ID=Msa1178940-mRNA-1:exon:4236;Parent=Msa1178940-mRNA-1
chr8_1 exon 11831232 11831369 11831232 ID=Msa1178940-mRNA-1:exon:4237;Parent=Msa1178940-mRNA-1
chr8_1 exon 11834546 11834779 11834546 ID=Msa1178940-mRNA-1:exon:4238;Parent=Msa1178940-mRNA-1
chr8_1 exon 11835495 11835643 11835495 ID=Msa1178940-mRNA-1:exon:4239;Parent=Msa1178940-mRNA-1
chr8_1 exon 11835897 11835971 11835897 ID=Msa1178940-mRNA-1:exon:4240;Parent=Msa1178940-mRNA-1
chr8_1 exon 11836500 11836667 11836500 ID=Msa1178940-mRNA-1:exon:4241;Parent=Msa1178940-mRNA-1
chr8_1 exon 11836750 11837387 11836750 ID=Msa1178940-mRNA-1:exon:4242;Parent=Msa1178940-mRNA-1
chr8_1 five_prime_UTR 11828751 11829008 11828751 ID=Msa1178940-mRNA-1:five_prime_utr;Parent=Msa1178940-mRNA-1
chr8_1 five_prime_UTR 11829105 11829459 11829105 ID=Msa1178940-mRNA-1:five_prime_utr;Parent=Msa1178940-mRNA-1
chr8_1 five_prime_UTR 11830893 11831035 11830893 ID=Msa1178940-mRNA-1:five_prime_utr;Parent=Msa1178940-mRNA-1
chr8_1 five_prime_UTR 11831232 11831369 11831232 ID=Msa1178940-mRNA-1:five_prime_utr;Parent=Msa1178940-mRNA-1
chr8_1 five_prime_UTR 11834546 11834571 11834546 ID=Msa1178940-mRNA-1:five_prime_utr;Parent=Msa1178940-mRNA-1
chr8_1 CDS 11834572 11834779 11834572 ID=Msa1178940-mRNA-1:cds;Parent=Msa1178940-mRNA-1
chr8_1 CDS 11835495 11835643 11835495 ID=Msa1178940-mRNA-1:cds;Parent=Msa1178940-mRNA-1
chr8_1 CDS 11835897 11835971 11835897 ID=Msa1178940-mRNA-1:cds;Parent=Msa1178940-mRNA-1
chr8_1 CDS 11836500 11836667 11836500 ID=Msa1178940-mRNA-1:cds;Parent=Msa1178940-mRNA-1
chr8_1 CDS 11836750 11837106 11836750 ID=Msa1178940-mRNA-1:cds;Parent=Msa1178940-mRNA-1
chr8_1 three_prime_UTR 11837107 11837387 11837107 ID=Msa1178940-mRNA-1:three_prime_utr;Parent=Msa1178940-mRNA-1
Gene Sequence

>Msa1178940

ATGAAGCACTCATGGCCATGGGGGACTTGTTCTGAATCTGGTGTGCAACAATCCTCTATGTCAGAAAATCTAACTTTGAATATGAGTGTTTTGCAACAAGAATGCAACAAGTCTAAACCACTAGGTTTTCAATTTCAAGACCAAGATTCTTCTTCTACTCAATCAACTGGTCGTCAATCTTATCTGGAAGTTGGTTCGGAACAATCCGGTCCAATTTCTGTCCAGTATAACAATTCCTCTGCTTGTTCAACACTTAGCGAAACCGGCGGAAAGAGTGTGGAAGGTATCATCAGGTCATCTGCAGGAAGTCAGGATTTTACTTTGCCTCCTTCTCAACTGGATCACAACCAATCACTTGCTCATGTTGCATTCCCTCATGCTGAGACATACTCTAATGGCCTACTAGCAGCTCCATATGGATCACGGAATAATGTTAATCATGCTGAGCCAGTAGGAATGCCTCCCGTTCGGATTCCTTTGCCTCTTAATCTTTGTGAAGAACCAATATACGTGAATGCAAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCGTCAAAAATCGGAAACCATATCTACATGAGTCGCGCCATCTGCATGCATTGAAGAGAGCTAGAGGCTCTGGTGGACGTTTTCTAAATACCAAAAAGCTCCAAGACCATGGCTTTAATCTTTCCACCACTACTCGGCTGAATCCGAGTGGAAATGTGCTGGAATCAAGGGTACATCAAGTAGAAAAGTATAGAGATGGTGCTTCCACAACCACTTGTTCCGATGTCACAAGTGCTTCTAATAGTGACGACATGTTCCAACAACATGAATCCGACTTCAGATCATGTGGTTACCCTTCTCATATGCAGGATTTGTCAGCCGATGCCGGTGGTGGTGGTGGTCGGAATCAACACCGCCTATCTGTCCTTATGTGA
Protein sequence

>Msa1178940

MKHSWPWGTCSESGVQQSSMSENLTLNMSVLQQECNKSKPLGFQFQDQDSSSTQSTGRQSYLEVGSEQSGPISVQYNNSSACSTLSETGGKSVEGIIRSSAGSQDFTLPPSQLDHNQSLAHVAFPHAETYSNGLLAAPYGSRNNVNHAEPVGMPPVRIPLPLNLCEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTKKLQDHGFNLSTTTRLNPSGNVLESRVHQVEKYRDGASTTTCSDVTSASNSDDMFQQHESDFRSCGYPSHMQDLSADAGGGGGRNQHRLSVLM*