Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178960 | sp|Q5XEM9|ALFL5_ARATH | 71.373 | 255 | 68 | 2 | 6 | 256 | 7 | 260 | 1.55e-121 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178960 | A0FK62 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1178960 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178960 | MtrunA17_Chr8g0343441 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| Msa1178960 | MtrunA17_Chr2g0329821 | 80.081 | 246 | 48 | 1 | 10 | 255 | 6 | 250 | 7.56e-123 | 350 |
| Msa1178960 | MtrunA17_Chr2g0300241 | 72.441 | 254 | 60 | 3 | 5 | 256 | 8 | 253 | 1.35e-121 | 347 |
| Msa1178960 | MtrunA17_Chr1g0150821 | 74.903 | 259 | 53 | 3 | 7 | 256 | 8 | 263 | 3.07e-121 | 346 |
| Msa1178960 | MtrunA17_Chr4g0076771 | 73.361 | 244 | 64 | 1 | 9 | 252 | 10 | 252 | 1.21e-117 | 337 |
| Msa1178960 | MtrunA17_Chr4g0006381 | 62.651 | 249 | 81 | 6 | 8 | 256 | 6 | 242 | 8.03e-93 | 273 |
| Msa1178960 | MtrunA17_Chr7g0242511 | 60.643 | 249 | 86 | 7 | 8 | 256 | 6 | 242 | 2.15e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178960 | AT5G20510.1 | 71.373 | 255 | 68 | 2 | 6 | 256 | 7 | 260 | 1.58e-122 | 349 |
| Msa1178960 | AT3G42790.1 | 73.896 | 249 | 58 | 4 | 7 | 255 | 8 | 249 | 2.05e-121 | 346 |
| Msa1178960 | AT2G02470.1 | 68.340 | 259 | 76 | 4 | 1 | 256 | 1 | 256 | 1.18e-108 | 314 |
| Msa1178960 | AT2G02470.2 | 68.359 | 256 | 72 | 4 | 1 | 256 | 1 | 247 | 2.84e-108 | 313 |
| Msa1178960 | AT1G14510.1 | 68.421 | 247 | 74 | 3 | 9 | 255 | 9 | 251 | 8.64e-108 | 312 |
| Msa1178960 | AT5G26210.1 | 71.483 | 263 | 58 | 3 | 1 | 255 | 1 | 254 | 1.23e-103 | 301 |
| Msa1178960 | AT5G05610.2 | 63.673 | 245 | 76 | 5 | 8 | 252 | 7 | 238 | 2.74e-97 | 285 |
| Msa1178960 | AT5G05610.1 | 63.673 | 245 | 76 | 5 | 8 | 252 | 7 | 238 | 2.74e-97 | 285 |
| Msa1178960 | AT5G20510.2 | 69.585 | 217 | 61 | 2 | 44 | 256 | 4 | 219 | 4.20e-96 | 281 |
| Msa1178960 | AT3G11200.1 | 63.200 | 250 | 82 | 5 | 3 | 252 | 4 | 243 | 1.61e-93 | 275 |
| Msa1178960 | AT5G20510.3 | 74.843 | 159 | 40 | 0 | 6 | 164 | 7 | 165 | 1.16e-81 | 243 |
| Msa1178960 | AT3G11200.2 | 62.212 | 217 | 72 | 5 | 36 | 252 | 24 | 230 | 1.30e-77 | 234 |
| Msa1178960 | AT2G02470.3 | 74.051 | 158 | 40 | 1 | 1 | 158 | 1 | 157 | 5.15e-71 | 218 |
Find 96 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTAGACGTTTAAGTTAT+TGG | 0.111390 | 8_1:+11853232 | Msa1178960:three_prime_UTR |
| TTAAACAGAAATTTATTTAA+AGG | 0.199446 | 8_1:+11853455 | Msa1178960:three_prime_UTR |
| ATGAAAGTGGAAGTGGGTTT+AGG | 0.270720 | 8_1:-11849413 | None:intergenic |
| TAAACAGAAATTTATTTAAA+GGG | 0.287793 | 8_1:+11853456 | Msa1178960:three_prime_UTR |
| GTCTGCTTAACCTGAGGTTC+TGG | 0.298478 | 8_1:-11852903 | None:intergenic |
| TGAAAGTGGAAGTGGGTTTA+GGG | 0.303717 | 8_1:-11849412 | None:intergenic |
| TCAATATTTGAAGTTGTTAC+TGG | 0.306554 | 8_1:+11851989 | Msa1178960:CDS |
| TACTACTTTGGTGCCAGATT+TGG | 0.319173 | 8_1:+11851799 | Msa1178960:CDS |
| TGCTTGGCATTAACTTTGCC+AGG | 0.326435 | 8_1:+11851704 | Msa1178960:CDS |
| AGAGAAAGACTGGCTATCTT+TGG | 0.329748 | 8_1:+11851738 | Msa1178960:CDS |
| TCCTCCACCTCATCATCTTT+AGG | 0.341682 | 8_1:-11852942 | None:intergenic |
| TGCTTGTCATTATGTCTTCA+AGG | 0.361766 | 8_1:-11853167 | None:intergenic |
| ACAACAGCACAATTCTATAA+TGG | 0.377988 | 8_1:-11853296 | None:intergenic |
| GTTTCTGTTTGGCACATTGT+AGG | 0.378628 | 8_1:+11853258 | Msa1178960:three_prime_UTR |
| AGATGATGAGGTGGAGGAAC+TGG | 0.383921 | 8_1:+11852947 | Msa1178960:CDS |
| AGCACAGGCTCGGGAAGCTC+TGG | 0.385581 | 8_1:-11851685 | None:intergenic |
| TACCGCTTTCGAGCTGGACT+TGG | 0.388039 | 8_1:-11852071 | None:intergenic |
| ATTATGGCACTGATGAATTC+TGG | 0.392260 | 8_1:+11853024 | Msa1178960:CDS |
| GTTATTGGATAGTTTCTGTT+TGG | 0.395909 | 8_1:+11853247 | Msa1178960:three_prime_UTR |
| AGATTTGTCGAAGCCAAATC+TGG | 0.397894 | 8_1:-11851812 | None:intergenic |
| GAGAAGAATGAAAGTGGAAG+TGG | 0.405729 | 8_1:-11849420 | None:intergenic |
| GGCATTAACTTTGCCAGGGA+TGG | 0.411593 | 8_1:+11851709 | Msa1178960:CDS |
| GAGCTTCCCGAGCCTGTGCT+TGG | 0.413554 | 8_1:+11851688 | Msa1178960:CDS |
| GAGAGTGAAGTGGGAGAGAC+AGG | 0.418291 | 8_1:-11849360 | None:intergenic |
| TTGATATGCTCAGCCCTAGC+AGG | 0.419284 | 8_1:-11853101 | None:intergenic |
| TTATAGAATTGTGCTGTTGT+TGG | 0.425011 | 8_1:+11853299 | Msa1178960:three_prime_UTR |
| TATTTATGAATTGCTGACTT+TGG | 0.425547 | 8_1:+11853388 | Msa1178960:three_prime_UTR |
| TGGAAGAGTGAGAGTGAAGT+GGG | 0.428539 | 8_1:-11849369 | None:intergenic |
| TTTCTCTTGCATGCCATCCC+TGG | 0.429424 | 8_1:-11851722 | None:intergenic |
| AAGGAGAACCTGTGCTTGTA+TGG | 0.431624 | 8_1:+11851613 | Msa1178960:CDS |
| TTGCTGTTCACAGTGATTCA+TGG | 0.433165 | 8_1:+11851761 | Msa1178960:CDS |
| GGTGCATGCGGTGAGCATTA+TGG | 0.433315 | 8_1:+11853008 | Msa1178960:CDS |
| GATCATTGATCATGTTGAAC+AGG | 0.434639 | 8_1:-11851961 | None:intergenic |
| GTTCTATACCCAATGTGATC+CGG | 0.448947 | 8_1:+11851048 | Msa1178960:CDS |
| ATCGCCATTGCGTACTACTT+TGG | 0.461307 | 8_1:+11851787 | Msa1178960:CDS |
| TTGACTTCCCACTGCTCACT+AGG | 0.465024 | 8_1:-11851640 | None:intergenic |
| ATTATTTACCGCTTTCGAGC+TGG | 0.469549 | 8_1:-11852077 | None:intergenic |
| CTCTTATTGTTACTGCATGA+TGG | 0.471278 | 8_1:-11853137 | None:intergenic |
| TAACTTACCCGGATCACATT+GGG | 0.487332 | 8_1:-11851056 | None:intergenic |
| GCGTCCATTGTAGCTTCTCC+TGG | 0.487437 | 8_1:-11849452 | None:intergenic |
| CTCTCTAGAAGAGCTTCGCT+TGG | 0.489797 | 8_1:-11849320 | None:intergenic |
| CTCACCGCATGCACCACATA+AGG | 0.495356 | 8_1:-11853000 | None:intergenic |
| GTAACAACTTCAAATATTGA+TGG | 0.502359 | 8_1:-11851986 | None:intergenic |
| TTCTATACCCAATGTGATCC+GGG | 0.502678 | 8_1:+11851049 | Msa1178960:CDS |
| GTTAATGCCAAGCACAGGCT+CGG | 0.508894 | 8_1:-11851695 | None:intergenic |
| GGCTTTGTCTGCTTAACCTG+AGG | 0.513964 | 8_1:-11852909 | None:intergenic |
| TGATATGCTCAGCCCTAGCA+GGG | 0.516021 | 8_1:-11853100 | None:intergenic |
| GTGTGAAGATCACCCCTGCT+AGG | 0.516439 | 8_1:+11853087 | Msa1178960:CDS |
| GCTTGTCATTATGTCTTCAA+GGG | 0.517013 | 8_1:-11853166 | None:intergenic |
| GCAGCGGGCTCCAGAACCTC+AGG | 0.519888 | 8_1:+11852893 | Msa1178960:intron |
| TGTTCTGAGAAGAATGAAAG+TGG | 0.519962 | 8_1:-11849426 | None:intergenic |
| ATCTGTGAGAAGTGGTTCCA+TGG | 0.520574 | 8_1:+11853059 | Msa1178960:CDS |
| CTCATCAAAGCTCTCACCAC+TGG | 0.525319 | 8_1:+11849542 | Msa1178960:CDS |
| TTAATGTTATGAGGAAAACT+AGG | 0.525641 | 8_1:+11853428 | Msa1178960:three_prime_UTR |
| ATGGCATGCAAGAGAAAGAC+TGG | 0.534454 | 8_1:+11851728 | Msa1178960:CDS |
| TTGAAAGAGAATTTGTGAAG+TGG | 0.536001 | 8_1:-11849389 | None:intergenic |
| TCTGGCGGAACTTCCTCAGC+AGG | 0.540129 | 8_1:-11851667 | None:intergenic |
| ACAGGCTCGGGAAGCTCTGG+CGG | 0.540889 | 8_1:-11851682 | None:intergenic |
| ACCTAAAGATGATGAGGTGG+AGG | 0.542306 | 8_1:+11852941 | Msa1178960:CDS |
| TTAATGCCAAGCACAGGCTC+GGG | 0.544159 | 8_1:-11851694 | None:intergenic |
| GGTTAAGCAGACAAAGCCAT+TGG | 0.555690 | 8_1:+11852914 | Msa1178960:CDS |
| AAAACTTCCTCAACGGTGCG+TGG | 0.559807 | 8_1:-11849491 | None:intergenic |
| GTGGAAGAGTGAGAGTGAAG+TGG | 0.563225 | 8_1:-11849370 | None:intergenic |
| TGACTTCCCACTGCTCACTA+GGG | 0.569521 | 8_1:-11851639 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.574011 | 8_1:-11853076 | None:intergenic |
| ATCTCTGAAAACTTCCTCAA+CGG | 0.574665 | 8_1:-11849498 | None:intergenic |
| TGGCTTCCCTAGTGAGCAGT+GGG | 0.576162 | 8_1:+11851633 | Msa1178960:CDS |
| GGAAGTCAATTTACCTGCTG+AGG | 0.576632 | 8_1:+11851654 | Msa1178960:CDS |
| TGAGGTGGAGGAACTGGACG+AGG | 0.577577 | 8_1:+11852953 | Msa1178960:CDS |
| GCAAAGTTAATGCCAAGCAC+AGG | 0.578595 | 8_1:-11851700 | None:intergenic |
| ATTCTTCTCAGAACAAGACC+AGG | 0.580606 | 8_1:+11849434 | Msa1178960:five_prime_UTR |
| ATCCAAGTCCAGCTCGAAAG+CGG | 0.582695 | 8_1:+11852069 | Msa1178960:CDS |
| TAGGGAAGCCATACAAGCAC+AGG | 0.583243 | 8_1:-11851621 | None:intergenic |
| AGAAGAATGAAAGTGGAAGT+GGG | 0.589079 | 8_1:-11849419 | None:intergenic |
| TTGGCTTCGACAAATCTGAC+AGG | 0.592431 | 8_1:+11851818 | Msa1178960:CDS |
| TCATCTTTAGGTAACTCCAA+TGG | 0.594683 | 8_1:-11852930 | None:intergenic |
| TGTGAAGATCACCCCTGCTA+GGG | 0.600442 | 8_1:+11853088 | Msa1178960:CDS |
| GCTTGGCATTAACTTTGCCA+GGG | 0.610233 | 8_1:+11851705 | Msa1178960:CDS |
| AAGACCAGGAGAAGCTACAA+TGG | 0.610651 | 8_1:+11849448 | Msa1178960:exon |
| TGAAGACATAATGACAAGCA+AGG | 0.610657 | 8_1:+11853170 | Msa1178960:exon |
| GCAATTCAGTCGATGACTTG+TGG | 0.611722 | 8_1:+11853339 | Msa1178960:three_prime_UTR |
| TCTGTGAGAAGTGGTTCCAT+GGG | 0.618326 | 8_1:+11853060 | Msa1178960:CDS |
| GGAGTTACCTAAAGATGATG+AGG | 0.622708 | 8_1:+11852935 | Msa1178960:CDS |
| GCTGTGACATCTGTGAGAAG+TGG | 0.623459 | 8_1:+11853051 | Msa1178960:CDS |
| GTAACTTACCCGGATCACAT+TGG | 0.626802 | 8_1:-11851057 | None:intergenic |
| GTATAATCCACGCACCGTTG+AGG | 0.643429 | 8_1:+11849484 | Msa1178960:CDS |
| GGCACCAAAGTAGTACGCAA+TGG | 0.648228 | 8_1:-11851791 | None:intergenic |
| ATGGCTTCCCTAGTGAGCAG+TGG | 0.650269 | 8_1:+11851632 | Msa1178960:CDS |
| GAACATGGAGAGACCTTATG+TGG | 0.650525 | 8_1:+11852987 | Msa1178960:CDS |
| ACTTGGATTTGCTGCCACTG+TGG | 0.654768 | 8_1:-11852054 | None:intergenic |
| TGCAGCAAAGAAACAAGTCA+AGG | 0.656590 | 8_1:+11852012 | Msa1178960:CDS |
| GTTACCTAAAGATGATGAGG+TGG | 0.657704 | 8_1:+11852938 | Msa1178960:CDS |
| GAGGAAGATGAAGATGAACA+TGG | 0.668055 | 8_1:+11852972 | Msa1178960:CDS |
| GATATGCTCAGCCCTAGCAG+GGG | 0.690376 | 8_1:-11853099 | None:intergenic |
| GAGACCTTATGTGGTGCATG+CGG | 0.712511 | 8_1:+11852996 | Msa1178960:CDS |
| TCTTCAGTTTCAAACCACAG+TGG | 0.768394 | 8_1:+11852040 | Msa1178960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTCAAATTCATTTTT+TGG | + | chr8_1:11849617-11849636 | Msa1178960:intron | 10.0% |
| !!! | TATTTTTCAATTTTACTTAA+TGG | + | chr8_1:11849892-11849911 | Msa1178960:intron | 10.0% |
| !!! | ATTTTTCAATTTTACTTAAT+GGG | + | chr8_1:11849893-11849912 | Msa1178960:intron | 10.0% |
| !!! | ATATTTAATTTTCAAATTCA+TGG | + | chr8_1:11852688-11852707 | Msa1178960:intron | 10.0% |
| !! | TTAAACAGAAATTTATTTAA+AGG | + | chr8_1:11853455-11853474 | Msa1178960:three_prime_UTR | 10.0% |
| !! | TAAACAGAAATTTATTTAAA+GGG | + | chr8_1:11853456-11853475 | Msa1178960:three_prime_UTR | 10.0% |
| !!! | AACAAAAAAATGGTTTTTTA+AGG | - | chr8_1:11849581-11849600 | None:intergenic | 15.0% |
| !! | GAAAAAAAAGAACAAAAAAA+TGG | - | chr8_1:11849591-11849610 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTTATAATATTAG+CGG | + | chr8_1:11849761-11849780 | Msa1178960:intron | 15.0% |
| !! | AAGTTAAAAAAAAAATTGCA+AGG | - | chr8_1:11850033-11850052 | None:intergenic | 15.0% |
| !!! | TTATATATATTTTTTACCAC+CGG | + | chr8_1:11850148-11850167 | Msa1178960:intron | 15.0% |
| !! | ATACTTGTTTATGAATATTA+GGG | - | chr8_1:11851178-11851197 | None:intergenic | 15.0% |
| !!! | TATTGATTTTTGTGAAAAAA+TGG | + | chr8_1:11851263-11851282 | Msa1178960:intron | 15.0% |
| !! | ATTTAAATATTCCAAATCAT+GGG | - | chr8_1:11852252-11852271 | None:intergenic | 15.0% |
| !!! | TGTTTTTCAATTTTACTTGA+CGG | + | chr8_1:11849685-11849704 | Msa1178960:intron | 20.0% |
| !! | TTTAAATTGAGTATTTGAGA+TGG | + | chr8_1:11850005-11850024 | Msa1178960:intron | 20.0% |
| !!! | AATTTAGCTAGATTTGAAAT+GGG | + | chr8_1:11850255-11850274 | Msa1178960:intron | 20.0% |
| !!! | TTTTACAAGTGTTTTTAATG+TGG | + | chr8_1:11850291-11850310 | Msa1178960:intron | 20.0% |
| !! | TTGAATTGTGTAATAATTCA+TGG | + | chr8_1:11850368-11850387 | Msa1178960:intron | 20.0% |
| !! | TGAATTGTGTAATAATTCAT+GGG | + | chr8_1:11850369-11850388 | Msa1178960:intron | 20.0% |
| !! | GATACTTGTTTATGAATATT+AGG | - | chr8_1:11851179-11851198 | None:intergenic | 20.0% |
| !! | TTGAATATATATACTGAAGA+AGG | - | chr8_1:11851322-11851341 | None:intergenic | 20.0% |
| !!! | AAACTATATTAGTTTCATCA+AGG | + | chr8_1:11851374-11851393 | Msa1178960:intron | 20.0% |
| !!! | TAGAACTCTTGTTTATATTA+GGG | + | chr8_1:11852169-11852188 | Msa1178960:intron | 20.0% |
| !! | CATTTAAATATTCCAAATCA+TGG | - | chr8_1:11852253-11852272 | None:intergenic | 20.0% |
| !! | ATGAAAAATATTGTTTGCAA+TGG | + | chr8_1:11852521-11852540 | Msa1178960:intron | 20.0% |
| !! | TTTCAAATTCATGGTTTAAA+TGG | + | chr8_1:11852697-11852716 | Msa1178960:intron | 20.0% |
| !!! | TTTCTCATCTAATTTTTGAA+TGG | + | chr8_1:11852866-11852885 | Msa1178960:intron | 20.0% |
| !! | GAAGTTTTCAGAGATTTTAA+GGG | + | chr8_1:11849506-11849525 | Msa1178960:CDS | 25.0% |
| !!! | GTTTTTCAATTTTACTTGAC+GGG | + | chr8_1:11849686-11849705 | Msa1178960:intron | 25.0% |
| !! | GTTTTTCTTGAGAATTTCAT+TGG | + | chr8_1:11849849-11849868 | Msa1178960:intron | 25.0% |
| ! | GTGAAAAGTTCAAAATCAAA+AGG | - | chr8_1:11850228-11850247 | None:intergenic | 25.0% |
| ! | CAATTTAGCTAGATTTGAAA+TGG | + | chr8_1:11850254-11850273 | Msa1178960:intron | 25.0% |
| !!! | AGTTTAGTTTGTTGTGAAAT+GGG | + | chr8_1:11850411-11850430 | Msa1178960:intron | 25.0% |
| ! | ATTTGAACTAAAACTACCAT+AGG | + | chr8_1:11850442-11850461 | Msa1178960:intron | 25.0% |
| !!! | ACAACTTAACAAGCTTTTTT+TGG | + | chr8_1:11850608-11850627 | Msa1178960:intron | 25.0% |
| ! | ATATATGCTATAAGCTATGT+TGG | - | chr8_1:11850652-11850671 | None:intergenic | 25.0% |
| ! | TGTCAAAAAAAAACTACCAA+GGG | - | chr8_1:11850751-11850770 | None:intergenic | 25.0% |
| !! | AGTATCGAAAATGAATTATC+AGG | - | chr8_1:11850886-11850905 | None:intergenic | 25.0% |
| !!! | TAATCAAGTTTTAAACTTGC+TGG | + | chr8_1:11851129-11851148 | Msa1178960:intron | 25.0% |
| ! | ATTCAAATTAATCTTACACG+AGG | + | chr8_1:11851336-11851355 | Msa1178960:intron | 25.0% |
| ! | TTCAAATTAATCTTACACGA+GGG | + | chr8_1:11851337-11851356 | Msa1178960:intron | 25.0% |
| !!! | TCTTTTTTCGGTATTCTATT+TGG | + | chr8_1:11851550-11851569 | Msa1178960:intron | 25.0% |
| ! | GGTTAAGTTATCATATGTAT+CGG | + | chr8_1:11851873-11851892 | Msa1178960:intron | 25.0% |
| ! | GTAACAACTTCAAATATTGA+TGG | - | chr8_1:11851989-11852008 | None:intergenic | 25.0% |
| !! | TCAATATTTGAAGTTGTTAC+TGG | + | chr8_1:11851989-11852008 | Msa1178960:CDS | 25.0% |
| !! | GTAGAACTCTTGTTTATATT+AGG | + | chr8_1:11852168-11852187 | Msa1178960:intron | 25.0% |
| ! | TAGCTAGTTAGTTAATTATC+TGG | + | chr8_1:11852217-11852236 | Msa1178960:intron | 25.0% |
| ! | AGCTAGTTAGTTAATTATCT+GGG | + | chr8_1:11852218-11852237 | Msa1178960:intron | 25.0% |
| ! | AGTTAAATCTGGTATCATAT+TGG | + | chr8_1:11852344-11852363 | Msa1178960:intron | 25.0% |
| !! | GATTTTCTTCTTCTTGATAA+TGG | + | chr8_1:11852379-11852398 | Msa1178960:intron | 25.0% |
| !! | AAGTTTTCTTTTGAATGCAT+GGG | - | chr8_1:11852494-11852513 | None:intergenic | 25.0% |
| !! | AAAGTTTTCTTTTGAATGCA+TGG | - | chr8_1:11852495-11852514 | None:intergenic | 25.0% |
| ! | TGATTGTGAACAATTTATCA+TGG | + | chr8_1:11852563-11852582 | Msa1178960:intron | 25.0% |
| !!! | GCAGTTTCTTTTTTATTGAT+TGG | + | chr8_1:11852834-11852853 | Msa1178960:intron | 25.0% |
| !! | TTTCTAGACGTTTAAGTTAT+TGG | + | chr8_1:11853232-11853251 | Msa1178960:three_prime_UTR | 25.0% |
| !!! | TATTTATGAATTGCTGACTT+TGG | + | chr8_1:11853388-11853407 | Msa1178960:three_prime_UTR | 25.0% |
| !! | ATCTTTTCCTTAATGTTATG+AGG | + | chr8_1:11853419-11853438 | Msa1178960:three_prime_UTR | 25.0% |
| !! | TAGTTTTCCTCATAACATTA+AGG | - | chr8_1:11853429-11853448 | None:intergenic | 25.0% |
| ! | TTAATGTTATGAGGAAAACT+AGG | + | chr8_1:11853428-11853447 | Msa1178960:three_prime_UTR | 25.0% |
| TTGAAAGAGAATTTGTGAAG+TGG | - | chr8_1:11849392-11849411 | None:intergenic | 30.0% | |
| ! | GGAAGTTTTCAGAGATTTTA+AGG | + | chr8_1:11849505-11849524 | Msa1178960:CDS | 30.0% |
| TTGAATGAAATCATGTGTCT+CGG | - | chr8_1:11850128-11850147 | None:intergenic | 30.0% | |
| ACATGAAAATTAACCACATC+AGG | - | chr8_1:11850344-11850363 | None:intergenic | 30.0% | |
| !! | GAGTTTAGTTTGTTGTGAAA+TGG | + | chr8_1:11850410-11850429 | Msa1178960:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr8_1:11850561-11850580 | Msa1178960:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr8_1:11850562-11850581 | Msa1178960:intron | 30.0% |
| !! | TTGTCATAAGCTGTTTTCAT+AGG | - | chr8_1:11850592-11850611 | None:intergenic | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr8_1:11850725-11850744 | Msa1178960:intron | 30.0% | |
| CTGTCAAAAAAAAACTACCA+AGG | - | chr8_1:11850752-11850771 | None:intergenic | 30.0% | |
| AAAAGTGAATGTAACTTACC+CGG | - | chr8_1:11851070-11851089 | None:intergenic | 30.0% | |
| AAGAAAAATCCTGTAGAGAA+CGG | + | chr8_1:11851493-11851512 | Msa1178960:intron | 30.0% | |
| !!! | TTACAGGGCATTTCTTTTTT+CGG | + | chr8_1:11851538-11851557 | Msa1178960:intron | 30.0% |
| TTACTTGATTCTTTCAGAGA+AGG | + | chr8_1:11851594-11851613 | Msa1178960:intron | 30.0% | |
| TTAACCATAAATCTTACCAG+CGG | + | chr8_1:11851852-11851871 | Msa1178960:intron | 30.0% | |
| GCTAGTTAGTTAATTATCTG+GGG | + | chr8_1:11852219-11852238 | Msa1178960:intron | 30.0% | |
| ! | ATGATACCAGATTTAACTTC+TGG | - | chr8_1:11852342-11852361 | None:intergenic | 30.0% |
| AAATCTGGTATCATATTGGA+TGG | + | chr8_1:11852348-11852367 | Msa1178960:intron | 30.0% | |
| !!! | GTTATTTTTGAAGTCTGATG+TGG | + | chr8_1:11852596-11852615 | Msa1178960:intron | 30.0% |
| ! | AAAGTACTCCAAATTTGTGA+AGG | + | chr8_1:11852734-11852753 | Msa1178960:intron | 30.0% |
| ATATACCACCTTCACAAATT+TGG | - | chr8_1:11852745-11852764 | None:intergenic | 30.0% | |
| !!! | GCAGTTTCTTTTTTATTGCT+TGG | + | chr8_1:11852804-11852823 | Msa1178960:intron | 30.0% |
| GTTATTGGATAGTTTCTGTT+TGG | + | chr8_1:11853247-11853266 | Msa1178960:three_prime_UTR | 30.0% | |
| ACAACAGCACAATTCTATAA+TGG | - | chr8_1:11853299-11853318 | None:intergenic | 30.0% | |
| ! | TTATAGAATTGTGCTGTTGT+TGG | + | chr8_1:11853299-11853318 | Msa1178960:three_prime_UTR | 30.0% |
| AGAAGAATGAAAGTGGAAGT+GGG | - | chr8_1:11849422-11849441 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAAGAATGAAAG+TGG | - | chr8_1:11849429-11849448 | None:intergenic | 35.0% |
| ! | ATCTCTGAAAACTTCCTCAA+CGG | - | chr8_1:11849501-11849520 | None:intergenic | 35.0% |
| !! | AGGTTTGTTAGATATACCAG+TGG | - | chr8_1:11849561-11849580 | None:intergenic | 35.0% |
| ! | GGTCAACTGAATTTTCAACT+GGG | + | chr8_1:11849707-11849726 | Msa1178960:intron | 35.0% |
| ! | AACTGAATTTTCAACTGGGT+TGG | + | chr8_1:11849711-11849730 | Msa1178960:intron | 35.0% |
| !!! | GGTCAACTGAATTTTCAAGT+GGG | + | chr8_1:11849914-11849933 | Msa1178960:intron | 35.0% |
| ATGAAACAGTGACACATACA+AGG | - | chr8_1:11850195-11850214 | None:intergenic | 35.0% | |
| !! | GTGTTTTTAATGTGGCTGTT+TGG | + | chr8_1:11850299-11850318 | Msa1178960:intron | 35.0% |
| GTAATAATTCATGGGTTCTC+AGG | + | chr8_1:11850377-11850396 | Msa1178960:intron | 35.0% | |
| !! | TAGTTTGTTGTGAAATGGGA+AGG | + | chr8_1:11850415-11850434 | Msa1178960:intron | 35.0% |
| TGAACTAAAACTACCATAGG+TGG | + | chr8_1:11850445-11850464 | Msa1178960:intron | 35.0% | |
| TAGGCAACAACTGACTAAAT+GGG | - | chr8_1:11850501-11850520 | None:intergenic | 35.0% | |
| ATAGGCAACAACTGACTAAA+TGG | - | chr8_1:11850502-11850521 | None:intergenic | 35.0% | |
| ! | GTTGTTGCCTATCATCTTTT+AGG | + | chr8_1:11850510-11850529 | Msa1178960:intron | 35.0% |
| AACAGGTCCTAAAAGATGAT+AGG | - | chr8_1:11850520-11850539 | None:intergenic | 35.0% | |
| !!! | ATCATCTTTTAGGACCTGTT+TGG | + | chr8_1:11850520-11850539 | Msa1178960:intron | 35.0% |
| GTAGATAAACCAATCCAAAC+AGG | - | chr8_1:11850537-11850556 | None:intergenic | 35.0% | |
| ! | AGTTTTTCTTGCACTTGATG+TGG | + | chr8_1:11850796-11850815 | Msa1178960:intron | 35.0% |
| ACACATCATGTATCAATTGC+AGG | - | chr8_1:11850841-11850860 | None:intergenic | 35.0% | |
| ! | TGACATTTTGTGCTTCATTG+TGG | + | chr8_1:11850912-11850931 | Msa1178960:intron | 35.0% |
| GAACACAACCAAAAAGTTCA+AGG | - | chr8_1:11850938-11850957 | None:intergenic | 35.0% | |
| !! | AGTTACATTCACTTTTCACG+TGG | + | chr8_1:11851074-11851093 | Msa1178960:intron | 35.0% |
| !!! | CAAGTTTTAAACTTGCTGGA+TGG | + | chr8_1:11851133-11851152 | Msa1178960:intron | 35.0% |
| TTGTGAAAAAATGGCCACTT+TGG | + | chr8_1:11851272-11851291 | Msa1178960:intron | 35.0% | |
| AATGTGAAAACATGTGCTCA+AGG | - | chr8_1:11851299-11851318 | None:intergenic | 35.0% | |
| !! | CAACGAAAAAAAGTACTGCT+AGG | - | chr8_1:11851434-11851453 | None:intergenic | 35.0% |
| ! | TGCCATGTTATACTGATTAC+AGG | + | chr8_1:11851522-11851541 | Msa1178960:intron | 35.0% |
| ! | GCCATGTTATACTGATTACA+GGG | + | chr8_1:11851523-11851542 | Msa1178960:intron | 35.0% |
| ! | CTCTGAAAGAATCAAGTAAC+AGG | - | chr8_1:11851593-11851612 | None:intergenic | 35.0% |
| TTAACCGCTGGTAAGATTTA+TGG | - | chr8_1:11851859-11851878 | None:intergenic | 35.0% | |
| ACATATGATAACTTAACCGC+TGG | - | chr8_1:11851871-11851890 | None:intergenic | 35.0% | |
| GATCATTGATCATGTTGAAC+AGG | - | chr8_1:11851964-11851983 | None:intergenic | 35.0% | |
| TTTCATGTGTACTGTTGTTC+TGG | + | chr8_1:11852629-11852648 | Msa1178960:intron | 35.0% | |
| ! | ATTTTTGAATGGTGAAGCAG+CGG | + | chr8_1:11852877-11852896 | Msa1178960:intron | 35.0% |
| TCATCTTTAGGTAACTCCAA+TGG | - | chr8_1:11852933-11852952 | None:intergenic | 35.0% | |
| !! | ATTATGGCACTGATGAATTC+TGG | + | chr8_1:11853024-11853043 | Msa1178960:CDS | 35.0% |
| CTCTTATTGTTACTGCATGA+TGG | - | chr8_1:11853140-11853159 | None:intergenic | 35.0% | |
| GCTTGTCATTATGTCTTCAA+GGG | - | chr8_1:11853169-11853188 | None:intergenic | 35.0% | |
| TGCTTGTCATTATGTCTTCA+AGG | - | chr8_1:11853170-11853189 | None:intergenic | 35.0% | |
| TGAAGACATAATGACAAGCA+AGG | + | chr8_1:11853170-11853189 | Msa1178960:exon | 35.0% | |
| !!! | GTTGTTGGTTTTGTTGTTGT+CGG | + | chr8_1:11853314-11853333 | Msa1178960:three_prime_UTR | 35.0% |
| ! | TGAAAGTGGAAGTGGGTTTA+GGG | - | chr8_1:11849415-11849434 | None:intergenic | 40.0% |
| ! | ATGAAAGTGGAAGTGGGTTT+AGG | - | chr8_1:11849416-11849435 | None:intergenic | 40.0% |
| GAGAAGAATGAAAGTGGAAG+TGG | - | chr8_1:11849423-11849442 | None:intergenic | 40.0% | |
| ATTCTTCTCAGAACAAGACC+AGG | + | chr8_1:11849434-11849453 | Msa1178960:five_prime_UTR | 40.0% | |
| ! | GGGTCAACTGAATTTTCAAC+TGG | + | chr8_1:11849706-11849725 | Msa1178960:intron | 40.0% |
| !! | GGGTCAACTGAATTTTCAAG+TGG | + | chr8_1:11849913-11849932 | Msa1178960:intron | 40.0% |
| ACACTTTCGATCAGAAGTCT+CGG | - | chr8_1:11850079-11850098 | None:intergenic | 40.0% | |
| CTGATGATTGATACCTGATG+TGG | + | chr8_1:11850328-11850347 | Msa1178960:intron | 40.0% | |
| AATTCATGGGTTCTCAGGAA+TGG | + | chr8_1:11850382-11850401 | Msa1178960:intron | 40.0% | |
| ATTCATGGGTTCTCAGGAAT+GGG | + | chr8_1:11850383-11850402 | Msa1178960:intron | 40.0% | |
| AAAACTACCATAGGTGGATG+TGG | + | chr8_1:11850451-11850470 | Msa1178960:intron | 40.0% | |
| CAATAAACCACATCCACCTA+TGG | - | chr8_1:11850461-11850480 | None:intergenic | 40.0% | |
| CATAGGTGGATGTGGTTTAT+TGG | + | chr8_1:11850459-11850478 | Msa1178960:intron | 40.0% | |
| !!! | CTTTTAGGACCTGTTTGGAT+TGG | + | chr8_1:11850525-11850544 | Msa1178960:intron | 40.0% |
| TTATGCGTAAGCGCTTATCA+TGG | + | chr8_1:11850691-11850710 | Msa1178960:intron | 40.0% | |
| ! | TTTTCTTGCACTTGATGTGG+AGG | + | chr8_1:11850799-11850818 | Msa1178960:intron | 40.0% |
| TTTCTTGCACTTGATGTGGA+GGG | + | chr8_1:11850800-11850819 | Msa1178960:intron | 40.0% | |
| !! | CATTGTGGCCTTGAACTTTT+TGG | + | chr8_1:11850927-11850946 | Msa1178960:intron | 40.0% |
| ! | CTGATGAACTATTTTCTGCC+TGG | + | chr8_1:11851001-11851020 | Msa1178960:intron | 40.0% |
| GTTCTATACCCAATGTGATC+CGG | + | chr8_1:11851048-11851067 | Msa1178960:CDS | 40.0% | |
| TTCTATACCCAATGTGATCC+GGG | + | chr8_1:11851049-11851068 | Msa1178960:CDS | 40.0% | |
| TAACTTACCCGGATCACATT+GGG | - | chr8_1:11851059-11851078 | None:intergenic | 40.0% | |
| AATCCAAAAGACAAATGCCG+TGG | - | chr8_1:11851110-11851129 | None:intergenic | 40.0% | |
| CTGGATGGATGAATGCAATA+GGG | + | chr8_1:11851148-11851167 | Msa1178960:intron | 40.0% | |
| TGGATGGATGAATGCAATAG+GGG | + | chr8_1:11851149-11851168 | Msa1178960:intron | 40.0% | |
| GCCCTGTAATCAGTATAACA+TGG | - | chr8_1:11851527-11851546 | None:intergenic | 40.0% | |
| ! | AGAGAAAGACTGGCTATCTT+TGG | + | chr8_1:11851738-11851757 | Msa1178960:CDS | 40.0% |
| ! | TTGCTGTTCACAGTGATTCA+TGG | + | chr8_1:11851761-11851780 | Msa1178960:CDS | 40.0% |
| !! | TACTACTTTGGTGCCAGATT+TGG | + | chr8_1:11851799-11851818 | Msa1178960:CDS | 40.0% |
| AGATTTGTCGAAGCCAAATC+TGG | - | chr8_1:11851815-11851834 | None:intergenic | 40.0% | |
| CAATGGAAGTCATGAGTACA+TGG | - | chr8_1:11851927-11851946 | None:intergenic | 40.0% | |
| TGCAGCAAAGAAACAAGTCA+AGG | + | chr8_1:11852012-11852031 | Msa1178960:CDS | 40.0% | |
| TCTTCAGTTTCAAACCACAG+TGG | + | chr8_1:11852040-11852059 | Msa1178960:CDS | 40.0% | |
| ATTATTTACCGCTTTCGAGC+TGG | - | chr8_1:11852080-11852099 | None:intergenic | 40.0% | |
| ! | CCAGATTTAACTTCTGGAGA+TGG | - | chr8_1:11852336-11852355 | None:intergenic | 40.0% |
| CCATCTCCAGAAGTTAAATC+TGG | + | chr8_1:11852333-11852352 | Msa1178960:intron | 40.0% | |
| ! | TTCTTTTGAATGCATGGGCA+AGG | - | chr8_1:11852489-11852508 | None:intergenic | 40.0% |
| TTGTTTGCAATGGAAATCCC+TGG | + | chr8_1:11852531-11852550 | Msa1178960:intron | 40.0% | |
| ! | TTGAAGTCTGATGTGGATTG+TGG | + | chr8_1:11852603-11852622 | Msa1178960:intron | 40.0% |
| ! | TGAAGTCTGATGTGGATTGT+GGG | + | chr8_1:11852604-11852623 | Msa1178960:intron | 40.0% |
| ! | TGTTGTTCTGGATGTGATAG+CGG | + | chr8_1:11852641-11852660 | Msa1178960:intron | 40.0% |
| GTACTCCAAATTTGTGAAGG+TGG | + | chr8_1:11852737-11852756 | Msa1178960:intron | 40.0% | |
| ! | TTTTTGAATGGTGAAGCAGC+GGG | + | chr8_1:11852878-11852897 | Msa1178960:intron | 40.0% |
| GGAGTTACCTAAAGATGATG+AGG | + | chr8_1:11852935-11852954 | Msa1178960:CDS | 40.0% | |
| GTTACCTAAAGATGATGAGG+TGG | + | chr8_1:11852938-11852957 | Msa1178960:CDS | 40.0% | |
| GAGGAAGATGAAGATGAACA+TGG | + | chr8_1:11852972-11852991 | Msa1178960:CDS | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | - | chr8_1:11853079-11853098 | None:intergenic | 40.0% | |
| GTTTCTGTTTGGCACATTGT+AGG | + | chr8_1:11853258-11853277 | Msa1178960:three_prime_UTR | 40.0% | |
| TGGAAGAGTGAGAGTGAAGT+GGG | - | chr8_1:11849372-11849391 | None:intergenic | 45.0% | |
| AAGACCAGGAGAAGCTACAA+TGG | + | chr8_1:11849448-11849467 | Msa1178960:exon | 45.0% | |
| GAAATCATGTGTCTCGGACA+CGG | - | chr8_1:11850122-11850141 | None:intergenic | 45.0% | |
| TGTTTATCCAAACAGGCCCT+TGG | + | chr8_1:11850732-11850751 | Msa1178960:intron | 45.0% | |
| AAAACTACCAAGGGCCTGTT+TGG | - | chr8_1:11850742-11850761 | None:intergenic | 45.0% | |
| GTAACTTACCCGGATCACAT+TGG | - | chr8_1:11851060-11851079 | None:intergenic | 45.0% | |
| GCTGGATGGATGAATGCAAT+AGG | + | chr8_1:11851147-11851166 | Msa1178960:intron | 45.0% | |
| GCAAGTAATCCGTTCTCTAC+AGG | - | chr8_1:11851505-11851524 | None:intergenic | 45.0% | |
| AAGGAGAACCTGTGCTTGTA+TGG | + | chr8_1:11851613-11851632 | Msa1178960:CDS | 45.0% | |
| GGAAGTCAATTTACCTGCTG+AGG | + | chr8_1:11851654-11851673 | Msa1178960:CDS | 45.0% | |
| GCAAAGTTAATGCCAAGCAC+AGG | - | chr8_1:11851703-11851722 | None:intergenic | 45.0% | |
| TGCTTGGCATTAACTTTGCC+AGG | + | chr8_1:11851704-11851723 | Msa1178960:CDS | 45.0% | |
| GCTTGGCATTAACTTTGCCA+GGG | + | chr8_1:11851705-11851724 | Msa1178960:CDS | 45.0% | |
| ATGGCATGCAAGAGAAAGAC+TGG | + | chr8_1:11851728-11851747 | Msa1178960:CDS | 45.0% | |
| ATCGCCATTGCGTACTACTT+TGG | + | chr8_1:11851787-11851806 | Msa1178960:CDS | 45.0% | |
| TTGGCTTCGACAAATCTGAC+AGG | + | chr8_1:11851818-11851837 | Msa1178960:CDS | 45.0% | |
| CATGACTTCCATTGTGATGC+AGG | + | chr8_1:11851933-11851952 | Msa1178960:intron | 45.0% | |
| TTTGCAATGGAAATCCCTGG+AGG | + | chr8_1:11852534-11852553 | Msa1178960:intron | 45.0% | |
| CACAATCACAATAGCCTCCA+GGG | - | chr8_1:11852551-11852570 | None:intergenic | 45.0% | |
| TCACAATCACAATAGCCTCC+AGG | - | chr8_1:11852552-11852571 | None:intergenic | 45.0% | |
| GGTTAAGCAGACAAAGCCAT+TGG | + | chr8_1:11852914-11852933 | Msa1178960:CDS | 45.0% | |
| ACCTAAAGATGATGAGGTGG+AGG | + | chr8_1:11852941-11852960 | Msa1178960:CDS | 45.0% | |
| TCCTCCACCTCATCATCTTT+AGG | - | chr8_1:11852945-11852964 | None:intergenic | 45.0% | |
| GAACATGGAGAGACCTTATG+TGG | + | chr8_1:11852987-11853006 | Msa1178960:CDS | 45.0% | |
| ATCTGTGAGAAGTGGTTCCA+TGG | + | chr8_1:11853059-11853078 | Msa1178960:CDS | 45.0% | |
| TCTGTGAGAAGTGGTTCCAT+GGG | + | chr8_1:11853060-11853079 | Msa1178960:CDS | 45.0% | |
| GCAATTCAGTCGATGACTTG+TGG | + | chr8_1:11853339-11853358 | Msa1178960:three_prime_UTR | 45.0% | |
| ! | CTCTCTAGAAGAGCTTCGCT+TGG | - | chr8_1:11849323-11849342 | None:intergenic | 50.0% |
| GTGGAAGAGTGAGAGTGAAG+TGG | - | chr8_1:11849373-11849392 | None:intergenic | 50.0% | |
| GTATAATCCACGCACCGTTG+AGG | + | chr8_1:11849484-11849503 | Msa1178960:CDS | 50.0% | |
| AAAACTTCCTCAACGGTGCG+TGG | - | chr8_1:11849494-11849513 | None:intergenic | 50.0% | |
| !! | GATTTTAAGGGTCGTCGTGC+TGG | + | chr8_1:11849518-11849537 | Msa1178960:CDS | 50.0% |
| CTCATCAAAGCTCTCACCAC+TGG | + | chr8_1:11849542-11849561 | Msa1178960:CDS | 50.0% | |
| ACCAGAGACAACACGTACAC+CGG | - | chr8_1:11850170-11850189 | None:intergenic | 50.0% | |
| ACATCTGCAACAGCACAACC+AGG | - | chr8_1:11851022-11851041 | None:intergenic | 50.0% | |
| !!! | CACGTGGTAGTTTTGTGCCA+CGG | + | chr8_1:11851090-11851109 | Msa1178960:intron | 50.0% |
| ! | GTGCCACGGCATTTGTCTTT+TGG | + | chr8_1:11851104-11851123 | Msa1178960:intron | 50.0% |
| CATGTGCTCAAGGACCAAAG+TGG | - | chr8_1:11851289-11851308 | None:intergenic | 50.0% | |
| TAGGGAAGCCATACAAGCAC+AGG | - | chr8_1:11851624-11851643 | None:intergenic | 50.0% | |
| TGACTTCCCACTGCTCACTA+GGG | - | chr8_1:11851642-11851661 | None:intergenic | 50.0% | |
| TTGACTTCCCACTGCTCACT+AGG | - | chr8_1:11851643-11851662 | None:intergenic | 50.0% | |
| TTAATGCCAAGCACAGGCTC+GGG | - | chr8_1:11851697-11851716 | None:intergenic | 50.0% | |
| GTTAATGCCAAGCACAGGCT+CGG | - | chr8_1:11851698-11851717 | None:intergenic | 50.0% | |
| GGCATTAACTTTGCCAGGGA+TGG | + | chr8_1:11851709-11851728 | Msa1178960:CDS | 50.0% | |
| TTTCTCTTGCATGCCATCCC+TGG | - | chr8_1:11851725-11851744 | None:intergenic | 50.0% | |
| GGCACCAAAGTAGTACGCAA+TGG | - | chr8_1:11851794-11851813 | None:intergenic | 50.0% | |
| !! | ACTTGGATTTGCTGCCACTG+TGG | - | chr8_1:11852057-11852076 | None:intergenic | 50.0% |
| ATCCAAGTCCAGCTCGAAAG+CGG | + | chr8_1:11852069-11852088 | Msa1178960:CDS | 50.0% | |
| GGGGAATTCAGCCCATGATT+TGG | + | chr8_1:11852238-11852257 | Msa1178960:intron | 50.0% | |
| GTCTGCTTAACCTGAGGTTC+TGG | - | chr8_1:11852906-11852925 | None:intergenic | 50.0% | |
| ! | GGCTTTGTCTGCTTAACCTG+AGG | - | chr8_1:11852912-11852931 | None:intergenic | 50.0% |
| AGATGATGAGGTGGAGGAAC+TGG | + | chr8_1:11852947-11852966 | Msa1178960:CDS | 50.0% | |
| GAGACCTTATGTGGTGCATG+CGG | + | chr8_1:11852996-11853015 | Msa1178960:CDS | 50.0% | |
| GCTGTGACATCTGTGAGAAG+TGG | + | chr8_1:11853051-11853070 | Msa1178960:CDS | 50.0% | |
| TGTGAAGATCACCCCTGCTA+GGG | + | chr8_1:11853088-11853107 | Msa1178960:CDS | 50.0% | |
| TGATATGCTCAGCCCTAGCA+GGG | - | chr8_1:11853103-11853122 | None:intergenic | 50.0% | |
| TTGATATGCTCAGCCCTAGC+AGG | - | chr8_1:11853104-11853123 | None:intergenic | 50.0% | |
| GAGAGTGAAGTGGGAGAGAC+AGG | - | chr8_1:11849363-11849382 | None:intergenic | 55.0% | |
| GCGTCCATTGTAGCTTCTCC+TGG | - | chr8_1:11849455-11849474 | None:intergenic | 55.0% | |
| AGAGACAACACGTACACCGG+TGG | - | chr8_1:11850167-11850186 | None:intergenic | 55.0% | |
| ACCGGTGTACGTGTTGTCTC+TGG | + | chr8_1:11850166-11850185 | Msa1178960:intron | 55.0% | |
| ATGGCTTCCCTAGTGAGCAG+TGG | + | chr8_1:11851632-11851651 | Msa1178960:CDS | 55.0% | |
| TGGCTTCCCTAGTGAGCAGT+GGG | + | chr8_1:11851633-11851652 | Msa1178960:CDS | 55.0% | |
| AGGCGCTTCCTGCATCACAA+TGG | - | chr8_1:11851944-11851963 | None:intergenic | 55.0% | |
| TACCGCTTTCGAGCTGGACT+TGG | - | chr8_1:11852074-11852093 | None:intergenic | 55.0% | |
| CTCACCGCATGCACCACATA+AGG | - | chr8_1:11853003-11853022 | None:intergenic | 55.0% | |
| GGTGCATGCGGTGAGCATTA+TGG | + | chr8_1:11853008-11853027 | Msa1178960:CDS | 55.0% | |
| GTGTGAAGATCACCCCTGCT+AGG | + | chr8_1:11853087-11853106 | Msa1178960:CDS | 55.0% | |
| GATATGCTCAGCCCTAGCAG+GGG | - | chr8_1:11853102-11853121 | None:intergenic | 55.0% | |
| TCTCGGACACGGAGACACGT+CGG | - | chr8_1:11850111-11850130 | None:intergenic | 60.0% | |
| TCTGGCGGAACTTCCTCAGC+AGG | - | chr8_1:11851670-11851689 | None:intergenic | 60.0% | |
| TGAGGTGGAGGAACTGGACG+AGG | + | chr8_1:11852953-11852972 | Msa1178960:CDS | 60.0% | |
| CACGGAGACACGTCGGACAC+AGG | - | chr8_1:11850104-11850123 | None:intergenic | 65.0% | |
| ! | ACAGGCTCGGGAAGCTCTGG+CGG | - | chr8_1:11851685-11851704 | None:intergenic | 65.0% |
| AGCACAGGCTCGGGAAGCTC+TGG | - | chr8_1:11851688-11851707 | None:intergenic | 65.0% | |
| GAGCTTCCCGAGCCTGTGCT+TGG | + | chr8_1:11851688-11851707 | Msa1178960:CDS | 65.0% | |
| ! | GCAGCGGGCTCCAGAACCTC+AGG | + | chr8_1:11852893-11852912 | Msa1178960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 11849265 | 11853489 | 11849265 | ID=Msa1178960;Name=Msa1178960 |
| chr8_1 | mRNA | 11849265 | 11853489 | 11849265 | ID=Msa1178960-mRNA-1;Parent=Msa1178960;Name=Msa1178960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=202|1|1|1|1|1|5|317|256 |
| chr8_1 | exon | 11849265 | 11849563 | 11849265 | ID=Msa1178960-mRNA-1:exon:4199;Parent=Msa1178960-mRNA-1 |
| chr8_1 | exon | 11851038 | 11851070 | 11851038 | ID=Msa1178960-mRNA-1:exon:4200;Parent=Msa1178960-mRNA-1 |
| chr8_1 | exon | 11851611 | 11851839 | 11851611 | ID=Msa1178960-mRNA-1:exon:4201;Parent=Msa1178960-mRNA-1 |
| chr8_1 | exon | 11851955 | 11852090 | 11851955 | ID=Msa1178960-mRNA-1:exon:4202;Parent=Msa1178960-mRNA-1 |
| chr8_1 | exon | 11852897 | 11853489 | 11852897 | ID=Msa1178960-mRNA-1:exon:4203;Parent=Msa1178960-mRNA-1 |
| chr8_1 | five_prime_UTR | 11849265 | 11849466 | 11849265 | ID=Msa1178960-mRNA-1:five_prime_utr;Parent=Msa1178960-mRNA-1 |
| chr8_1 | CDS | 11849467 | 11849563 | 11849467 | ID=Msa1178960-mRNA-1:cds;Parent=Msa1178960-mRNA-1 |
| chr8_1 | CDS | 11851038 | 11851070 | 11851038 | ID=Msa1178960-mRNA-1:cds;Parent=Msa1178960-mRNA-1 |
| chr8_1 | CDS | 11851611 | 11851839 | 11851611 | ID=Msa1178960-mRNA-1:cds;Parent=Msa1178960-mRNA-1 |
| chr8_1 | CDS | 11851955 | 11852090 | 11851955 | ID=Msa1178960-mRNA-1:cds;Parent=Msa1178960-mRNA-1 |
| chr8_1 | CDS | 11852897 | 11853172 | 11852897 | ID=Msa1178960-mRNA-1:cds;Parent=Msa1178960-mRNA-1 |
| chr8_1 | three_prime_UTR | 11853173 | 11853489 | 11853173 | ID=Msa1178960-mRNA-1:three_prime_utr;Parent=Msa1178960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
