Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179260 | XP_003627170.1 | 82.623 | 305 | 34 | 3 | 1 | 305 | 1 | 286 | 2.63e-170 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179260 | sp|F4IEY4|TRB5_ARATH | 42.395 | 309 | 146 | 7 | 1 | 302 | 1 | 284 | 5.63e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179260 | G7LI96 | 82.623 | 305 | 34 | 3 | 1 | 305 | 1 | 286 | 1.26e-170 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1179260 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179260 | MtrunA17_Chr8g0342871 | 82.623 | 305 | 34 | 3 | 1 | 305 | 1 | 286 | 2.42e-174 | 484 |
| Msa1179260 | MtrunA17_Chr2g0329921 | 47.937 | 315 | 140 | 8 | 1 | 304 | 1 | 302 | 1.49e-82 | 251 |
| Msa1179260 | MtrunA17_Chr8g0384671 | 38.249 | 217 | 114 | 5 | 1 | 216 | 1 | 198 | 3.58e-35 | 129 |
| Msa1179260 | MtrunA17_Chr2g0293381 | 37.900 | 219 | 118 | 5 | 1 | 219 | 1 | 201 | 3.46e-34 | 126 |
| Msa1179260 | MtrunA17_Chr4g0054131 | 39.806 | 206 | 107 | 6 | 1 | 197 | 1 | 198 | 1.15e-33 | 125 |
| Msa1179260 | MtrunA17_Chr5g0401061 | 38.191 | 199 | 105 | 4 | 1 | 197 | 1 | 183 | 1.70e-33 | 125 |
| Msa1179260 | MtrunA17_Chr1g0166681 | 55.556 | 63 | 28 | 0 | 1 | 63 | 1 | 63 | 1.71e-18 | 82.0 |
| Msa1179260 | MtrunA17_Chr8g0383821 | 60.345 | 58 | 23 | 0 | 1 | 58 | 1 | 58 | 6.44e-18 | 79.0 |
| Msa1179260 | MtrunA17_Chr7g0260771 | 43.939 | 66 | 36 | 1 | 133 | 197 | 63 | 128 | 7.12e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179260 | AT1G72740.2 | 43.234 | 303 | 146 | 6 | 1 | 302 | 1 | 278 | 2.61e-67 | 212 |
| Msa1179260 | AT1G72740.1 | 42.395 | 309 | 146 | 7 | 1 | 302 | 1 | 284 | 5.72e-65 | 206 |
| Msa1179260 | AT1G17520.4 | 43.137 | 306 | 151 | 5 | 1 | 302 | 1 | 287 | 1.62e-64 | 205 |
| Msa1179260 | AT1G17520.3 | 42.997 | 307 | 151 | 6 | 1 | 302 | 1 | 288 | 8.65e-63 | 201 |
| Msa1179260 | AT1G17520.1 | 42.308 | 312 | 151 | 6 | 1 | 302 | 1 | 293 | 5.04e-62 | 199 |
| Msa1179260 | AT1G17520.2 | 42.173 | 313 | 151 | 7 | 1 | 302 | 1 | 294 | 3.62e-60 | 194 |
| Msa1179260 | AT1G49950.3 | 34.906 | 212 | 94 | 5 | 1 | 197 | 1 | 183 | 2.77e-29 | 114 |
| Msa1179260 | AT1G49950.1 | 34.906 | 212 | 94 | 5 | 1 | 197 | 1 | 183 | 2.77e-29 | 114 |
| Msa1179260 | AT1G49950.2 | 34.906 | 212 | 94 | 5 | 1 | 197 | 1 | 183 | 2.77e-29 | 114 |
| Msa1179260 | AT3G49850.1 | 34.158 | 202 | 115 | 3 | 1 | 199 | 1 | 187 | 9.00e-28 | 109 |
| Msa1179260 | AT3G49850.2 | 34.158 | 202 | 115 | 3 | 1 | 199 | 1 | 187 | 9.00e-28 | 109 |
| Msa1179260 | AT5G67580.2 | 34.518 | 197 | 119 | 3 | 1 | 197 | 1 | 187 | 6.23e-26 | 105 |
| Msa1179260 | AT5G67580.1 | 34.518 | 197 | 119 | 3 | 1 | 197 | 1 | 187 | 6.23e-26 | 105 |
| Msa1179260 | AT1G54260.1 | 32.642 | 193 | 110 | 3 | 130 | 302 | 2 | 194 | 5.68e-22 | 92.0 |
| Msa1179260 | AT1G54240.1 | 28.736 | 174 | 113 | 5 | 136 | 302 | 57 | 226 | 8.81e-11 | 61.2 |
Find 69 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGCAGTAGAAAATTTA+AGG | 0.122041 | 8_1:-12584272 | None:intergenic |
| TTTGGTTTGTTTAGGATAAA+TGG | 0.205337 | 8_1:-12587953 | Msa1179260:intron |
| ACCCAATCTTGTTTGGATAT+TGG | 0.222845 | 8_1:-12584303 | Msa1179260:three_prime_UTR |
| TGAAGCTCTGACTACATTAA+AGG | 0.241020 | 8_1:-12586262 | Msa1179260:CDS |
| AAAGACATGGCCCTGGTAAA+TGG | 0.273347 | 8_1:-12588125 | Msa1179260:CDS |
| AAAATTTGTAGTCCAGTAAA+TGG | 0.305217 | 8_1:-12584417 | Msa1179260:three_prime_UTR |
| GAGACTGATGATTGCCGTTT+CGG | 0.334617 | 8_1:+12584809 | None:intergenic |
| AAGTTGTCAACACCATTTAC+TGG | 0.336743 | 8_1:+12584405 | None:intergenic |
| TAAGACTACCCAATCTTGTT+TGG | 0.347131 | 8_1:-12584310 | Msa1179260:three_prime_UTR |
| AACTGAAAACAAATCATATC+TGG | 0.352692 | 8_1:-12584717 | Msa1179260:CDS |
| CAAGATAAAAGAAGCCTTGT+TGG | 0.360419 | 8_1:-12584903 | Msa1179260:CDS |
| GCAGCAGGAGGTTTGCATTT+GGG | 0.365666 | 8_1:+12587888 | None:intergenic |
| AGCAGCAGGAGGTTTGCATT+TGG | 0.389149 | 8_1:+12587887 | None:intergenic |
| TGGGAAATCAAAAGCTGAAA+TGG | 0.392712 | 8_1:-12588185 | Msa1179260:CDS |
| GTCCAATATCCAAACAAGAT+TGG | 0.393316 | 8_1:+12584301 | None:intergenic |
| TCCAATATCCAAACAAGATT+GGG | 0.416339 | 8_1:+12584302 | None:intergenic |
| GGAGAAGAAGCAGCAGCAGC+AGG | 0.426934 | 8_1:+12587873 | None:intergenic |
| ACTACATTAAAGGATACTAA+TGG | 0.429817 | 8_1:-12586252 | Msa1179260:CDS |
| TGCGCGGTGAAACTATCAAA+TGG | 0.448048 | 8_1:-12584502 | Msa1179260:CDS |
| ACATTGTTCATAAAGTTGTT+CGG | 0.449895 | 8_1:+12584622 | None:intergenic |
| ACTGGAGTAGCAGCAGGAAC+AGG | 0.453763 | 8_1:+12587852 | None:intergenic |
| GCAGCACTGGAAGAAGAAAC+TGG | 0.461216 | 8_1:+12587834 | None:intergenic |
| TTTATCAGATTCCTTTAGTA+GGG | 0.463946 | 8_1:-12584368 | Msa1179260:three_prime_UTR |
| CAGCAAAACAAAAGGTGATC+AGG | 0.468429 | 8_1:-12584832 | Msa1179260:CDS |
| ATAACATTACTCAAGTTCCT+AGG | 0.472395 | 8_1:-12587914 | Msa1179260:CDS |
| ATTCTCCTTGACCCTCAGTT+CGG | 0.477510 | 8_1:-12588096 | Msa1179260:CDS |
| AGAATGGCTTTCCATTTACC+AGG | 0.481104 | 8_1:+12588114 | None:intergenic |
| ATCACCTTCACCAAAACAAA+AGG | 0.490999 | 8_1:-12584873 | Msa1179260:CDS |
| GAACTGAGGGTCAAGGAGAA+TGG | 0.501381 | 8_1:+12588098 | None:intergenic |
| AAAAGGTGATCAGGCCGAAA+CGG | 0.507533 | 8_1:-12584823 | Msa1179260:CDS |
| GAAGAAGACGCTCTTATCGC+TGG | 0.509747 | 8_1:-12588153 | Msa1179260:CDS |
| GGAGGAACAATTTGAAGAGG+AGG | 0.514663 | 8_1:+12587756 | None:intergenic |
| TACATGAGTTTCCCTACTAA+AGG | 0.515232 | 8_1:+12584357 | None:intergenic |
| AGTCACTGACTGCAAGGTTG+AGG | 0.520186 | 8_1:-12585881 | Msa1179260:CDS |
| TGCCATTGCTAGTTTCATTG+AGG | 0.522914 | 8_1:-12586217 | Msa1179260:intron |
| GAAGAAACTGGAGTAGCAGC+AGG | 0.530401 | 8_1:+12587846 | None:intergenic |
| AGTCTCTGATGATATGCTAA+AGG | 0.531940 | 8_1:-12584774 | Msa1179260:CDS |
| ATCACCTTCAGCAAAACAAA+AGG | 0.539850 | 8_1:-12584840 | Msa1179260:CDS |
| GAGTCAAGGCAAGCTTGAAA+AGG | 0.540743 | 8_1:-12585850 | Msa1179260:intron |
| GCGCGGTGAAACTATCAAAT+GGG | 0.543740 | 8_1:-12584501 | Msa1179260:CDS |
| TGGTCAATTTGAAGAGGTGG+AGG | 0.544270 | 8_1:+12587738 | None:intergenic |
| TCTTGGTCAATTTGAAGAGG+TGG | 0.553211 | 8_1:+12587735 | None:intergenic |
| GGTAACCTTGAGGTCGATGT+TGG | 0.557186 | 8_1:+12588053 | None:intergenic |
| TCAGAAAGTCACTGACTGCA+AGG | 0.561065 | 8_1:-12585887 | Msa1179260:CDS |
| TTAACAACAACATCAGAAGA+AGG | 0.563592 | 8_1:+12587789 | None:intergenic |
| GGTGGAGGAACAATTTGAAG+AGG | 0.565697 | 8_1:+12587753 | None:intergenic |
| ATTGCTGCAGCAAAAGCATC+CGG | 0.566445 | 8_1:-12585922 | Msa1179260:intron |
| ACTATCAAATGGGCTCAAGA+TGG | 0.566843 | 8_1:-12584491 | Msa1179260:CDS |
| GGTTTGCATTTGGGAAACCT+AGG | 0.568248 | 8_1:+12587897 | None:intergenic |
| TCGTTCCAACATCGACCTCA+AGG | 0.571236 | 8_1:-12588058 | Msa1179260:intron |
| CAAATCATATCTGGCAACTG+AGG | 0.579566 | 8_1:-12584708 | Msa1179260:CDS |
| TCAATTTATGCAGGTTTGCG+CGG | 0.581480 | 8_1:-12584518 | Msa1179260:intron |
| GAAGAAGCAGCAGCAGCAGG+AGG | 0.588164 | 8_1:+12587876 | None:intergenic |
| TTGAGGATGCTTGTGAGTCA+AGG | 0.588595 | 8_1:-12585864 | Msa1179260:CDS |
| AACTGAGGCAGTCAAGGCGA+CGG | 0.589786 | 8_1:-12584693 | Msa1179260:CDS |
| TCTGGCAACTGAGGCAGTCA+AGG | 0.592576 | 8_1:-12584699 | Msa1179260:CDS |
| ACATCTTGGTCAATTTGAAG+AGG | 0.594971 | 8_1:+12587732 | None:intergenic |
| TTTGGATATTGGACCCAAAG+TGG | 0.596046 | 8_1:-12584292 | Msa1179260:three_prime_UTR |
| TTGGAACGAGAAGTGAGTAA+AGG | 0.596141 | 8_1:+12588072 | None:intergenic |
| GGAATCGAAAGACATGGCCC+TGG | 0.601309 | 8_1:-12588132 | Msa1179260:CDS |
| GGTTTGTTTAGGATAAATGG+AGG | 0.604249 | 8_1:-12587950 | Msa1179260:intron |
| AACCTCAATGAAACTAGCAA+TGG | 0.624133 | 8_1:+12586215 | None:intergenic |
| AAGGACCGAACTGAGGGTCA+AGG | 0.625130 | 8_1:+12588091 | None:intergenic |
| ACCTTCACCAAAACAAAAGG+AGG | 0.631938 | 8_1:-12584870 | Msa1179260:CDS |
| TGAGTAAAGGACCGAACTGA+GGG | 0.636132 | 8_1:+12588085 | None:intergenic |
| GAATGGCTTTCCATTTACCA+GGG | 0.646220 | 8_1:+12588115 | None:intergenic |
| GTGAGTAAAGGACCGAACTG+AGG | 0.646832 | 8_1:+12588084 | None:intergenic |
| ACTAGCAATGGCATTTACGT+CGG | 0.664174 | 8_1:+12586227 | None:intergenic |
| ATCGCTGGAATCGAAAGACA+TGG | 0.677427 | 8_1:-12588138 | Msa1179260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTTAATATTTTT+TGG | - | chr8_1:12584563-12584582 | Msa1179260:intron | 0.0% |
| !!! | GTTTTATTGAATAATAATAA+TGG | - | chr8_1:12584329-12584348 | Msa1179260:three_prime_UTR | 10.0% |
| !!! | ATTATAAATGTTTTGTTAAA+AGG | - | chr8_1:12585771-12585790 | Msa1179260:intron | 10.0% |
| !!! | TTATAAATGTTTTGTTAAAA+GGG | - | chr8_1:12585772-12585791 | Msa1179260:intron | 10.0% |
| !! | ACTAAAAGTTTAATTAAATT+TGG | + | chr8_1:12585967-12585986 | None:intergenic | 10.0% |
| !! | TTAATATATCAGATTATATT+AGG | - | chr8_1:12586203-12586222 | Msa1179260:intron | 10.0% |
| !! | AAAGAAAAAAGAAAAAGAAA+AGG | + | chr8_1:12584539-12584558 | None:intergenic | 15.0% |
| !!! | TAATATTTTTTGGTTTGTTT+AGG | - | chr8_1:12584573-12584592 | Msa1179260:intron | 15.0% |
| !! | AAAACATTTATAATACTTAC+AGG | + | chr8_1:12585765-12585784 | None:intergenic | 15.0% |
| !!! | TTTAATTAAATTTGGTGAAA+CGG | + | chr8_1:12585959-12585978 | None:intergenic | 15.0% |
| !! | ATGTAAGAATTAAAATACCT+AGG | + | chr8_1:12584844-12584863 | None:intergenic | 20.0% |
| !! | AGAGTTTATTCAAGATTTAT+TGG | - | chr8_1:12585322-12585341 | Msa1179260:intron | 20.0% |
| !!! | TTTTGTACTAAATAGTGAAT+CGG | - | chr8_1:12585445-12585464 | Msa1179260:intron | 20.0% |
| !!! | TTAATTAAATTTGGTGAAAC+GGG | + | chr8_1:12585958-12585977 | None:intergenic | 20.0% |
| !!! | TTCTTTTGCTATTAATTTGA+TGG | - | chr8_1:12586145-12586164 | Msa1179260:intron | 20.0% |
| !! | ATCAGATTATATTAGGTTAT+TGG | - | chr8_1:12586210-12586229 | Msa1179260:intron | 20.0% |
| !! | TATTGTTAAATCATGTTGTT+TGG | - | chr8_1:12586791-12586810 | Msa1179260:intron | 20.0% |
| !!! | TTTGGTTTGTTTAGGATAAA+TGG | - | chr8_1:12584581-12584600 | Msa1179260:intron | 25.0% |
| !!! | TGTTGTTTTTAACAACATCT+TGG | + | chr8_1:12584819-12584838 | None:intergenic | 25.0% |
| ! | AAGTAAAATATTGTTGAGTG+AGG | - | chr8_1:12585205-12585224 | Msa1179260:intron | 25.0% |
| ! | AGTAAAATATTGTTGAGTGA+GGG | - | chr8_1:12585206-12585225 | Msa1179260:intron | 25.0% |
| ! | ATTCAAGATTTATTGGAGTA+AGG | - | chr8_1:12585329-12585348 | Msa1179260:intron | 25.0% |
| ! | ATAGTGTATTGTTACAATTC+TGG | - | chr8_1:12585375-12585394 | Msa1179260:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | + | chr8_1:12585432-12585451 | None:intergenic | 25.0% |
| ! | TTATTAAATAGCAGCTATAG+AGG | + | chr8_1:12585520-12585539 | None:intergenic | 25.0% |
| !! | CTATAGCTGCTATTTAATAA+CGG | - | chr8_1:12585520-12585539 | Msa1179260:intron | 25.0% |
| ! | ATTATGACTCTGTAGTTAAA+AGG | - | chr8_1:12585646-12585665 | Msa1179260:intron | 25.0% |
| ! | GTTTGATTCTTTACATTCAT+TGG | - | chr8_1:12585692-12585711 | Msa1179260:intron | 25.0% |
| !! | ACAATATCTTTGTTTCATGA+GGG | + | chr8_1:12585911-12585930 | None:intergenic | 25.0% |
| !! | TACAATATCTTTGTTTCATG+AGG | + | chr8_1:12585912-12585931 | None:intergenic | 25.0% |
| !! | GTACTTTTGTTCCTTTTATT+AGG | - | chr8_1:12586232-12586251 | Msa1179260:CDS | 25.0% |
| ! | ATGACATCATACCTAATAAA+AGG | + | chr8_1:12586246-12586265 | None:intergenic | 25.0% |
| ! | ACTACATTAAAGGATACTAA+TGG | - | chr8_1:12586282-12586301 | Msa1179260:CDS | 25.0% |
| !! | TTGCATAATCTCTAAAAACA+GGG | + | chr8_1:12586419-12586438 | None:intergenic | 25.0% |
| !! | ATTGCATAATCTCTAAAAAC+AGG | + | chr8_1:12586420-12586439 | None:intergenic | 25.0% |
| ! | ATATCAACTACTAGAATGAA+TGG | - | chr8_1:12586451-12586470 | Msa1179260:intron | 25.0% |
| !! | TAATTTTCCTTGATGTAACT+TGG | - | chr8_1:12586483-12586502 | Msa1179260:intron | 25.0% |
| !! | ACTTGGAAAACTAGTTTATA+TGG | - | chr8_1:12586500-12586519 | Msa1179260:intron | 25.0% |
| !! | ATTTGAACGTGTATTTTACT+TGG | - | chr8_1:12586765-12586784 | Msa1179260:intron | 25.0% |
| ! | AAAATACAAGGGAAAAATTG+TGG | + | chr8_1:12586899-12586918 | None:intergenic | 25.0% |
| ! | ACAGACACTAAAAAATACAA+GGG | + | chr8_1:12586910-12586929 | None:intergenic | 25.0% |
| ! | TTTATGTATTCAAGATCTCT+TGG | - | chr8_1:12587003-12587022 | Msa1179260:intron | 25.0% |
| !! | TGGTTAATTTGGAAACTTAT+AGG | - | chr8_1:12587023-12587042 | Msa1179260:intron | 25.0% |
| !!! | GCATTGTTTTTCACTAAAAT+AGG | - | chr8_1:12587176-12587195 | Msa1179260:intron | 25.0% |
| !!! | TTGTTTTTCACTAAAATAGG+TGG | - | chr8_1:12587179-12587198 | Msa1179260:intron | 25.0% |
| !! | AACTTGAATTCTTTGAAAGA+GGG | - | chr8_1:12587261-12587280 | Msa1179260:intron | 25.0% |
| ! | AACAAACTTCAAGATATTTC+AGG | + | chr8_1:12587529-12587548 | None:intergenic | 25.0% |
| ! | AACTGAAAACAAATCATATC+TGG | - | chr8_1:12587817-12587836 | Msa1179260:CDS | 25.0% |
| ! | ACATTGTTCATAAAGTTGTT+CGG | + | chr8_1:12587915-12587934 | None:intergenic | 25.0% |
| ! | AATTATAACCATTGATCTTG+TGG | - | chr8_1:12587992-12588011 | Msa1179260:intron | 25.0% |
| ! | ATTATAACCATTGATCTTGT+GGG | - | chr8_1:12587993-12588012 | Msa1179260:intron | 25.0% |
| ! | AAAATTTGTAGTCCAGTAAA+TGG | - | chr8_1:12588117-12588136 | Msa1179260:CDS | 25.0% |
| !! | TTTTATCAGATTCCTTTAGT+AGG | - | chr8_1:12588165-12588184 | Msa1179260:CDS | 25.0% |
| ! | TTTATCAGATTCCTTTAGTA+GGG | - | chr8_1:12588166-12588185 | Msa1179260:CDS | 25.0% |
| ATAACATTACTCAAGTTCCT+AGG | - | chr8_1:12584620-12584639 | Msa1179260:intron | 30.0% | |
| TTAACAACAACATCAGAAGA+AGG | + | chr8_1:12584748-12584767 | None:intergenic | 30.0% | |
| TTGTTAAAAACAACACACCT+AGG | - | chr8_1:12584824-12584843 | Msa1179260:CDS | 30.0% | |
| TCTTCTAAACAATTCGTCAT+TGG | + | chr8_1:12584912-12584931 | None:intergenic | 30.0% | |
| GTCAAATTGTTACAGAATAG+TGG | - | chr8_1:12585063-12585082 | Msa1179260:intron | 30.0% | |
| ATTGTTACAGAATAGTGGTT+TGG | - | chr8_1:12585068-12585087 | Msa1179260:intron | 30.0% | |
| ! | GTTGTGAGGAAATTTTATGT+GGG | - | chr8_1:12585090-12585109 | Msa1179260:intron | 30.0% |
| AAATAAACACACGCACTAAA+GGG | + | chr8_1:12585148-12585167 | None:intergenic | 30.0% | |
| ! | AGTTAAAAGGCTTTTGTACT+CGG | - | chr8_1:12585659-12585678 | Msa1179260:intron | 30.0% |
| !! | TGTTTTGTTAAAAGGGTAGA+AGG | - | chr8_1:12585779-12585798 | Msa1179260:intron | 30.0% |
| !! | ATTAGAGCATCATTTTGTAC+TGG | - | chr8_1:12585807-12585826 | Msa1179260:intron | 30.0% |
| !! | TTAGAGCATCATTTTGTACT+GGG | - | chr8_1:12585808-12585827 | Msa1179260:intron | 30.0% |
| ! | AATATCTTTGTTTCATGAGG+GGG | + | chr8_1:12585909-12585928 | None:intergenic | 30.0% |
| ! | CAATATCTTTGTTTCATGAG+GGG | + | chr8_1:12585910-12585929 | None:intergenic | 30.0% |
| GGTTTGTAAATTGATCCTAT+AGG | - | chr8_1:12586022-12586041 | Msa1179260:intron | 30.0% | |
| ! | TAGTTTTCCAAGTTACATCA+AGG | + | chr8_1:12586493-12586512 | None:intergenic | 30.0% |
| !!! | TTTCTGAAATTTTGAGGAAC+CGG | + | chr8_1:12586634-12586653 | None:intergenic | 30.0% |
| !!! | AGTGACTTTCTGAAATTTTG+AGG | + | chr8_1:12586640-12586659 | None:intergenic | 30.0% |
| CACAGACACTAAAAAATACA+AGG | + | chr8_1:12586911-12586930 | None:intergenic | 30.0% | |
| !!! | TGTATTTTTTAGTGTCTGTG+CGG | - | chr8_1:12586911-12586930 | Msa1179260:intron | 30.0% |
| TCAAGATCTCTTGGTTAATT+TGG | - | chr8_1:12587012-12587031 | Msa1179260:intron | 30.0% | |
| ! | TCAAGTTCTAACGAATATGA+TGG | + | chr8_1:12587248-12587267 | None:intergenic | 30.0% |
| ! | GAACTTGAATTCTTTGAAAG+AGG | - | chr8_1:12587260-12587279 | Msa1179260:intron | 30.0% |
| TCTGTTATTGTAAGGATCTT+GGG | - | chr8_1:12587307-12587326 | Msa1179260:intron | 30.0% | |
| !!! | ATGGTGTTGACAACTTTTTT+TGG | - | chr8_1:12588136-12588155 | Msa1179260:CDS | 30.0% |
| !!! | TGGTGTTGACAACTTTTTTT+GGG | - | chr8_1:12588137-12588156 | Msa1179260:CDS | 30.0% |
| TCCAATATCCAAACAAGATT+GGG | + | chr8_1:12588235-12588254 | None:intergenic | 30.0% | |
| TGGGAAATCAAAAGCTGAAA+TGG | - | chr8_1:12584349-12584368 | Msa1179260:three_prime_UTR | 35.0% | |
| GAAAACCCTAACATAAGCTA+GGG | + | chr8_1:12584510-12584529 | None:intergenic | 35.0% | |
| TGAAAACCCTAACATAAGCT+AGG | + | chr8_1:12584511-12584530 | None:intergenic | 35.0% | |
| ! | GGTTTGTTTAGGATAAATGG+AGG | - | chr8_1:12584584-12584603 | Msa1179260:intron | 35.0% |
| !!! | ATTTTGATTAACAGCAGCAC+TGG | + | chr8_1:12584716-12584735 | None:intergenic | 35.0% |
| ACATCTTGGTCAATTTGAAG+AGG | + | chr8_1:12584805-12584824 | None:intergenic | 35.0% | |
| TCTAAACAATTCGTCATTGG+CGG | + | chr8_1:12584909-12584928 | None:intergenic | 35.0% | |
| ! | AGAACCTGAGTTTGATTTCT+TGG | - | chr8_1:12584929-12584948 | Msa1179260:intron | 35.0% |
| !!! | ATTTTTTTGGCGTTAACCCT+CGG | + | chr8_1:12585030-12585049 | None:intergenic | 35.0% |
| ! | GGTTGTGAGGAAATTTTATG+TGG | - | chr8_1:12585089-12585108 | Msa1179260:intron | 35.0% |
| ! | GAAATTTTATGTGGGTGTCT+GGG | - | chr8_1:12585098-12585117 | Msa1179260:intron | 35.0% |
| AATAAACACACGCACTAAAG+GGG | + | chr8_1:12585147-12585166 | None:intergenic | 35.0% | |
| CAAATAAACACACGCACTAA+AGG | + | chr8_1:12585149-12585168 | None:intergenic | 35.0% | |
| TGCGTGTGTTTATTTGAGTA+TGG | - | chr8_1:12585153-12585172 | Msa1179260:intron | 35.0% | |
| GCGTGTGTTTATTTGAGTAT+GGG | - | chr8_1:12585154-12585173 | Msa1179260:intron | 35.0% | |
| GTGTTTATTTGAGTATGGGT+TGG | - | chr8_1:12585158-12585177 | Msa1179260:intron | 35.0% | |
| AAAACCGTCTTAAAAGGAGA+GGG | + | chr8_1:12585288-12585307 | None:intergenic | 35.0% | |
| CTCTACAAAACCGTCTTAAA+AGG | + | chr8_1:12585294-12585313 | None:intergenic | 35.0% | |
| !!! | CTTTTAAGACGGTTTTGTAG+AGG | - | chr8_1:12585292-12585311 | Msa1179260:intron | 35.0% |
| ! | CTGCTATTTAATAACGGTGT+TGG | - | chr8_1:12585526-12585545 | Msa1179260:intron | 35.0% |
| TTCATGTCACTCTAGATGTT+TGG | - | chr8_1:12585575-12585594 | Msa1179260:intron | 35.0% | |
| CTTTACATTCATTGGATGTC+TGG | - | chr8_1:12585700-12585719 | Msa1179260:intron | 35.0% | |
| TATGTGACAATCAGTCTGAT+CGG | - | chr8_1:12585994-12586013 | Msa1179260:intron | 35.0% | |
| GTCATTACATGTACACCTAT+AGG | + | chr8_1:12586040-12586059 | None:intergenic | 35.0% | |
| ATAGGTGTACATGTAATGAC+AGG | - | chr8_1:12586040-12586059 | Msa1179260:intron | 35.0% | |
| TAGGTGTACATGTAATGACA+GGG | - | chr8_1:12586041-12586060 | Msa1179260:intron | 35.0% | |
| ! | TGAAGCTCTGACTACATTAA+AGG | - | chr8_1:12586272-12586291 | Msa1179260:CDS | 35.0% |
| AACCTCAATGAAACTAGCAA+TGG | + | chr8_1:12586322-12586341 | None:intergenic | 35.0% | |
| TACTATACCATTTCGTGAGT+TGG | - | chr8_1:12586384-12586403 | Msa1179260:intron | 35.0% | |
| TTTCAAACCAACTCACGAAA+TGG | + | chr8_1:12586394-12586413 | None:intergenic | 35.0% | |
| TATCACGTAAGTATCAACAG+AGG | + | chr8_1:12586719-12586738 | None:intergenic | 35.0% | |
| AACTTATAGGTATAGCTGTG+TGG | - | chr8_1:12587036-12587055 | Msa1179260:intron | 35.0% | |
| ACTTATAGGTATAGCTGTGT+GGG | - | chr8_1:12587037-12587056 | Msa1179260:intron | 35.0% | |
| GCTATCGTAGAATATTGCTT+TGG | - | chr8_1:12587090-12587109 | Msa1179260:intron | 35.0% | |
| !! | GTTGTTGAGAAGTTTCTAGT+GGG | + | chr8_1:12587134-12587153 | None:intergenic | 35.0% |
| ! | TGTTGTTGAGAAGTTTCTAG+TGG | + | chr8_1:12587135-12587154 | None:intergenic | 35.0% |
| ! | CTTAAGTTGCACATATCTCT+GGG | + | chr8_1:12587213-12587232 | None:intergenic | 35.0% |
| ! | ACTTAAGTTGCACATATCTC+TGG | + | chr8_1:12587214-12587233 | None:intergenic | 35.0% |
| ! | TTAGTGGCTCTGTTATTGTA+AGG | - | chr8_1:12587299-12587318 | Msa1179260:intron | 35.0% |
| CTCTGTTATTGTAAGGATCT+TGG | - | chr8_1:12587306-12587325 | Msa1179260:intron | 35.0% | |
| TTATTGTAAGGATCTTGGGT+GGG | - | chr8_1:12587311-12587330 | Msa1179260:intron | 35.0% | |
| ! | ATTGGAAAGAGTGATGATGA+TGG | + | chr8_1:12587375-12587394 | None:intergenic | 35.0% |
| !! | ATTTTGGAGAGTTTTAGTCC+TGG | + | chr8_1:12587438-12587457 | None:intergenic | 35.0% |
| ! | ATGCACAGGAACATCTATTT+TGG | + | chr8_1:12587454-12587473 | None:intergenic | 35.0% |
| !!! | TCCAATTTTTTACCATCTGC+AGG | - | chr8_1:12587595-12587614 | Msa1179260:intron | 35.0% |
| TCCTGCAGATGGTAAAAAAT+TGG | + | chr8_1:12587599-12587618 | None:intergenic | 35.0% | |
| ! | AACAATTTTGTTCCTGCAGA+TGG | + | chr8_1:12587610-12587629 | None:intergenic | 35.0% |
| ! | CAAGATAAAAGAAGCCTTGT+TGG | - | chr8_1:12587631-12587650 | Msa1179260:intron | 35.0% |
| !!! | AGGTGATTTTTTCACCAACA+AGG | + | chr8_1:12587648-12587667 | None:intergenic | 35.0% |
| ATCACCTTCACCAAAACAAA+AGG | - | chr8_1:12587661-12587680 | Msa1179260:intron | 35.0% | |
| !!! | TTTTGTTTTGCTGAAGGTGA+TGG | + | chr8_1:12587695-12587714 | None:intergenic | 35.0% |
| ATCACCTTCAGCAAAACAAA+AGG | - | chr8_1:12587694-12587713 | Msa1179260:intron | 35.0% | |
| !!! | ATCACCTTTTGTTTTGCTGA+AGG | + | chr8_1:12587701-12587720 | None:intergenic | 35.0% |
| AGTCTCTGATGATATGCTAA+AGG | - | chr8_1:12587760-12587779 | Msa1179260:CDS | 35.0% | |
| AAATTGACCCACAAGATCAA+TGG | + | chr8_1:12588003-12588022 | None:intergenic | 35.0% | |
| AAGTTGTCAACACCATTTAC+TGG | + | chr8_1:12588132-12588151 | None:intergenic | 35.0% | |
| !!! | GGTGTTGACAACTTTTTTTG+GGG | - | chr8_1:12588138-12588157 | Msa1179260:CDS | 35.0% |
| TACATGAGTTTCCCTACTAA+AGG | + | chr8_1:12588180-12588199 | None:intergenic | 35.0% | |
| TAAGACTACCCAATCTTGTT+TGG | - | chr8_1:12588224-12588243 | Msa1179260:five_prime_UTR | 35.0% | |
| ! | ACCCAATCTTGTTTGGATAT+TGG | - | chr8_1:12588231-12588250 | Msa1179260:five_prime_UTR | 35.0% |
| GTCCAATATCCAAACAAGAT+TGG | + | chr8_1:12588236-12588255 | None:intergenic | 35.0% | |
| ! | TTTTCTACTGCTTCCACTTT+GGG | + | chr8_1:12588258-12588277 | None:intergenic | 35.0% |
| ! | ATTTTCTACTGCTTCCACTT+TGG | + | chr8_1:12588259-12588278 | None:intergenic | 35.0% |
| GAATGGCTTTCCATTTACCA+GGG | + | chr8_1:12584422-12584441 | None:intergenic | 40.0% | |
| AGAATGGCTTTCCATTTACC+AGG | + | chr8_1:12584423-12584442 | None:intergenic | 40.0% | |
| TTGGAACGAGAAGTGAGTAA+AGG | + | chr8_1:12584465-12584484 | None:intergenic | 40.0% | |
| ACCTTACCCTAGCTTATGTT+AGG | - | chr8_1:12584501-12584520 | Msa1179260:CDS | 40.0% | |
| CCTTACCCTAGCTTATGTTA+GGG | - | chr8_1:12584502-12584521 | Msa1179260:CDS | 40.0% | |
| TCTTGGTCAATTTGAAGAGG+TGG | + | chr8_1:12584802-12584821 | None:intergenic | 40.0% | |
| ! | ACCTGAGTTTGATTTCTTGG+TGG | - | chr8_1:12584932-12584951 | Msa1179260:intron | 40.0% |
| TCCACCAAGAAATCAAACTC+AGG | + | chr8_1:12584936-12584955 | None:intergenic | 40.0% | |
| TAATTCAGAGTTCGGTCAGA+AGG | + | chr8_1:12584984-12585003 | None:intergenic | 40.0% | |
| !! | AGAATAGTGGTTTGGTTGTG+AGG | - | chr8_1:12585076-12585095 | Msa1179260:intron | 40.0% |
| ! | GGAAATTTTATGTGGGTGTC+TGG | - | chr8_1:12585097-12585116 | Msa1179260:intron | 40.0% |
| ATAAACACACGCACTAAAGG+GGG | + | chr8_1:12585146-12585165 | None:intergenic | 40.0% | |
| !! | TTGAGTATGGGTTGGTTACT+TGG | - | chr8_1:12585166-12585185 | Msa1179260:intron | 40.0% |
| TGTCATATCTCATCCAATGC+AGG | + | chr8_1:12585234-12585253 | None:intergenic | 40.0% | |
| !! | ACATCCCTCTCCTTTTAAGA+CGG | - | chr8_1:12585281-12585300 | Msa1179260:intron | 40.0% |
| CAAAACCGTCTTAAAAGGAG+AGG | + | chr8_1:12585289-12585308 | None:intergenic | 40.0% | |
| !! | TTAAGACGGTTTTGTAGAGG+TGG | - | chr8_1:12585295-12585314 | Msa1179260:intron | 40.0% |
| AGTGACATGAATGAGCCTAT+AGG | + | chr8_1:12585566-12585585 | None:intergenic | 40.0% | |
| ATGTTTGGTTGTTGTAGTCG+TGG | - | chr8_1:12585590-12585609 | Msa1179260:intron | 40.0% | |
| TGTTTGGTTGTTGTAGTCGT+GGG | - | chr8_1:12585591-12585610 | Msa1179260:intron | 40.0% | |
| ! | AAAAGGCTTTTGTACTCGGA+TGG | - | chr8_1:12585663-12585682 | Msa1179260:intron | 40.0% |
| ! | GCATCATTTTGTACTGGGAT+TGG | - | chr8_1:12585813-12585832 | Msa1179260:intron | 40.0% |
| TATATCGTAGTGACTAGCGA+TGG | - | chr8_1:12585861-12585880 | Msa1179260:CDS | 40.0% | |
| CAATCAGTCTGATCGGTAAA+AGG | - | chr8_1:12586001-12586020 | Msa1179260:intron | 40.0% | |
| ACTAGCAATGGCATTTACGT+CGG | + | chr8_1:12586310-12586329 | None:intergenic | 40.0% | |
| ! | TGCCATTGCTAGTTTCATTG+AGG | - | chr8_1:12586317-12586336 | Msa1179260:intron | 40.0% |
| ! | ATCATGTTGTTTGGTCGAGT+TGG | - | chr8_1:12586800-12586819 | Msa1179260:intron | 40.0% |
| GAAAAATTGTGGAGCATAGG+AGG | + | chr8_1:12586888-12586907 | None:intergenic | 40.0% | |
| AGGGAAAAATTGTGGAGCAT+AGG | + | chr8_1:12586891-12586910 | None:intergenic | 40.0% | |
| TCACCTTTGTTCAACCTTAG+TGG | - | chr8_1:12586956-12586975 | Msa1179260:intron | 40.0% | |
| AGACCACTAAGGTTGAACAA+AGG | + | chr8_1:12586962-12586981 | None:intergenic | 40.0% | |
| AACAACATGCACAGTCGATA+AGG | - | chr8_1:12587148-12587167 | Msa1179260:intron | 40.0% | |
| GTTATTGTAAGGATCTTGGG+TGG | - | chr8_1:12587310-12587329 | Msa1179260:intron | 40.0% | |
| TATTGTAAGGATCTTGGGTG+GGG | - | chr8_1:12587312-12587331 | Msa1179260:intron | 40.0% | |
| AGTGTTGCGTGTAGAAACAT+TGG | + | chr8_1:12587393-12587412 | None:intergenic | 40.0% | |
| ACCTTCACCAAAACAAAAGG+AGG | - | chr8_1:12587664-12587683 | Msa1179260:intron | 40.0% | |
| CAGCAAAACAAAAGGTGATC+AGG | - | chr8_1:12587702-12587721 | Msa1179260:intron | 40.0% | |
| CAAATCATATCTGGCAACTG+AGG | - | chr8_1:12587826-12587845 | Msa1179260:CDS | 40.0% | |
| TCTTGTGGGTCAATTTATGC+AGG | - | chr8_1:12588007-12588026 | Msa1179260:intron | 40.0% | |
| TCAATTTATGCAGGTTTGCG+CGG | - | chr8_1:12588016-12588035 | Msa1179260:intron | 40.0% | |
| ! | ACTATCAAATGGGCTCAAGA+TGG | - | chr8_1:12588043-12588062 | Msa1179260:intron | 40.0% |
| TTTGGATATTGGACCCAAAG+TGG | - | chr8_1:12588242-12588261 | Msa1179260:five_prime_UTR | 40.0% | |
| ATCGCTGGAATCGAAAGACA+TGG | - | chr8_1:12584396-12584415 | Msa1179260:three_prime_UTR | 45.0% | |
| AAAGACATGGCCCTGGTAAA+TGG | - | chr8_1:12584409-12584428 | Msa1179260:three_prime_UTR | 45.0% | |
| ATTCTCCTTGACCCTCAGTT+CGG | - | chr8_1:12584438-12584457 | Msa1179260:three_prime_UTR | 45.0% | |
| TGAGTAAAGGACCGAACTGA+GGG | + | chr8_1:12584452-12584471 | None:intergenic | 45.0% | |
| CCCTAACATAAGCTAGGGTA+AGG | + | chr8_1:12584505-12584524 | None:intergenic | 45.0% | |
| GGTTTGCATTTGGGAAACCT+AGG | + | chr8_1:12584640-12584659 | None:intergenic | 45.0% | |
| GGAGGAACAATTTGAAGAGG+AGG | + | chr8_1:12584781-12584800 | None:intergenic | 45.0% | |
| GGTGGAGGAACAATTTGAAG+AGG | + | chr8_1:12584784-12584803 | None:intergenic | 45.0% | |
| TGGTCAATTTGAAGAGGTGG+AGG | + | chr8_1:12584799-12584818 | None:intergenic | 45.0% | |
| TGACCGAACTCTGAATTACC+AGG | - | chr8_1:12584986-12585005 | Msa1179260:intron | 45.0% | |
| GACCGAACTCTGAATTACCA+GGG | - | chr8_1:12584987-12585006 | Msa1179260:intron | 45.0% | |
| GACCCTGGTAATTCAGAGTT+CGG | + | chr8_1:12584992-12585011 | None:intergenic | 45.0% | |
| !! | GGGTTGGTTACTTGGTCAAT+TGG | - | chr8_1:12585174-12585193 | Msa1179260:intron | 45.0% |
| GCTATACTGCTAGAGCGTAA+TGG | + | chr8_1:12585496-12585515 | None:intergenic | 45.0% | |
| ATGAGCCTATAGGCTATAGC+AGG | + | chr8_1:12585556-12585575 | None:intergenic | 45.0% | |
| GTTTGGTTGTTGTAGTCGTG+GGG | - | chr8_1:12585592-12585611 | Msa1179260:intron | 45.0% | |
| TTTGGTTGTTGTAGTCGTGG+GGG | - | chr8_1:12585593-12585612 | Msa1179260:intron | 45.0% | |
| ! | TTTTGTACTCGGATGGTCGA+CGG | - | chr8_1:12585670-12585689 | Msa1179260:intron | 45.0% |
| !! | ATTGCTGCAGCAAAAGCATC+CGG | - | chr8_1:12586612-12586631 | Msa1179260:intron | 45.0% |
| ! | TCAGAAAGTCACTGACTGCA+AGG | - | chr8_1:12586647-12586666 | Msa1179260:intron | 45.0% |
| TTGAGGATGCTTGTGAGTCA+AGG | - | chr8_1:12586670-12586689 | Msa1179260:intron | 45.0% | |
| GAGTCAAGGCAAGCTTGAAA+AGG | - | chr8_1:12586684-12586703 | Msa1179260:intron | 45.0% | |
| AGAACGACAGTAGACCACTA+AGG | + | chr8_1:12586973-12586992 | None:intergenic | 45.0% | |
| GTATAGCTGTGTGGGTGATT+TGG | - | chr8_1:12587045-12587064 | Msa1179260:intron | 45.0% | |
| TTGCTTTGGCAATTGACCAG+AGG | - | chr8_1:12587104-12587123 | Msa1179260:intron | 45.0% | |
| TGCTTTGGCAATTGACCAGA+GGG | - | chr8_1:12587105-12587124 | Msa1179260:intron | 45.0% | |
| ATTGTAAGGATCTTGGGTGG+GGG | - | chr8_1:12587313-12587332 | Msa1179260:intron | 45.0% | |
| !!! | GGGGATTTTTTCGCAAGTAG+AGG | - | chr8_1:12587332-12587351 | Msa1179260:intron | 45.0% |
| !! | GAGAGTTTTAGTCCTGGCAA+TGG | + | chr8_1:12587432-12587451 | None:intergenic | 45.0% |
| AGATGTTCCTGTGCATCCAT+TGG | - | chr8_1:12587458-12587477 | Msa1179260:intron | 45.0% | |
| GATGTTCCTGTGCATCCATT+GGG | - | chr8_1:12587459-12587478 | Msa1179260:intron | 45.0% | |
| !!! | GCCTCCTTTTGTTTTGGTGA+AGG | + | chr8_1:12587668-12587687 | None:intergenic | 45.0% |
| !! | TTTTGCTGAAGGTGATGGCT+TGG | + | chr8_1:12587690-12587709 | None:intergenic | 45.0% |
| AAAAGGTGATCAGGCCGAAA+CGG | - | chr8_1:12587711-12587730 | Msa1179260:CDS | 45.0% | |
| ! | GAGACTGATGATTGCCGTTT+CGG | + | chr8_1:12587728-12587747 | None:intergenic | 45.0% |
| GACGGAAAAATACTCACGCA+TGG | - | chr8_1:12587859-12587878 | Msa1179260:CDS | 45.0% | |
| TGCGCGGTGAAACTATCAAA+TGG | - | chr8_1:12588032-12588051 | Msa1179260:intron | 45.0% | |
| GCGCGGTGAAACTATCAAAT+GGG | - | chr8_1:12588033-12588052 | Msa1179260:intron | 45.0% | |
| !!! | TTTTATTGAATAATAATAAT+GGG | - | chr8_1:12584330-12584349 | Msa1179260:three_prime_UTR | 5.0% |
| !!! | TAAGTTTTTTTTTATTTTTT+TGG | + | chr8_1:12585043-12585062 | None:intergenic | 5.0% |
| GAAGAAGACGCTCTTATCGC+TGG | - | chr8_1:12584381-12584400 | Msa1179260:three_prime_UTR | 50.0% | |
| GAACTGAGGGTCAAGGAGAA+TGG | + | chr8_1:12584439-12584458 | None:intergenic | 50.0% | |
| GTGAGTAAAGGACCGAACTG+AGG | + | chr8_1:12584453-12584472 | None:intergenic | 50.0% | |
| TCGTTCCAACATCGACCTCA+AGG | - | chr8_1:12584476-12584495 | Msa1179260:CDS | 50.0% | |
| GGTAACCTTGAGGTCGATGT+TGG | + | chr8_1:12584484-12584503 | None:intergenic | 50.0% | |
| GCTAGGGTAAGGTAACCTTG+AGG | + | chr8_1:12584494-12584513 | None:intergenic | 50.0% | |
| GCAGCAGGAGGTTTGCATTT+GGG | + | chr8_1:12584649-12584668 | None:intergenic | 50.0% | |
| AGCAGCAGGAGGTTTGCATT+TGG | + | chr8_1:12584650-12584669 | None:intergenic | 50.0% | |
| GAAGAAACTGGAGTAGCAGC+AGG | + | chr8_1:12584691-12584710 | None:intergenic | 50.0% | |
| ! | GCAGCACTGGAAGAAGAAAC+TGG | + | chr8_1:12584703-12584722 | None:intergenic | 50.0% |
| ! | CGTTAACCCTCGGTTTTCAG+GGG | + | chr8_1:12585020-12585039 | None:intergenic | 50.0% |
| ! | GCGTTAACCCTCGGTTTTCA+GGG | + | chr8_1:12585021-12585040 | None:intergenic | 50.0% |
| ACGCACTAAAGGGGGAATTG+TGG | + | chr8_1:12585138-12585157 | None:intergenic | 50.0% | |
| TTGAGTGAGGGTTCCTGCAT+TGG | - | chr8_1:12585218-12585237 | Msa1179260:intron | 50.0% | |
| TGGAGTAAGGTTGTCAGTCG+CGG | - | chr8_1:12585342-12585361 | Msa1179260:intron | 50.0% | |
| GACCACCTGCTATAGCCTAT+AGG | - | chr8_1:12585548-12585567 | Msa1179260:intron | 50.0% | |
| AGCCTATAGGCTATAGCAGG+TGG | + | chr8_1:12585553-12585572 | None:intergenic | 50.0% | |
| ATGTCTGGTAGTCGTAGTCC+TGG | - | chr8_1:12585715-12585734 | Msa1179260:intron | 50.0% | |
| TGTCTGGTAGTCGTAGTCCT+GGG | - | chr8_1:12585716-12585735 | Msa1179260:intron | 50.0% | |
| AACAAACACCTCTCATGCCC+AGG | + | chr8_1:12585736-12585755 | None:intergenic | 50.0% | |
| ! | AGTCACTGACTGCAAGGTTG+AGG | - | chr8_1:12586653-12586672 | Msa1179260:intron | 50.0% |
| AATTGTGGAGCATAGGAGGC+AGG | + | chr8_1:12586884-12586903 | None:intergenic | 50.0% | |
| !! | GTTTCTAGTGGGAAACCCTC+TGG | + | chr8_1:12587123-12587142 | None:intergenic | 50.0% |
| ! | GTAGTGCCTCTGCTGTTTAG+TGG | - | chr8_1:12587283-12587302 | Msa1179260:intron | 50.0% |
| ACAGAGCCACTAAACAGCAG+AGG | + | chr8_1:12587292-12587311 | None:intergenic | 50.0% | |
| ! | CATTGCTAGCTTCCATTGCC+AGG | - | chr8_1:12587417-12587436 | Msa1179260:intron | 50.0% |
| !! | GGCTTGGCCTCCTTTTGTTT+TGG | + | chr8_1:12587674-12587693 | None:intergenic | 50.0% |
| GGAATCGAAAGACATGGCCC+TGG | - | chr8_1:12584402-12584421 | Msa1179260:three_prime_UTR | 55.0% | |
| AAGGACCGAACTGAGGGTCA+AGG | + | chr8_1:12584446-12584465 | None:intergenic | 55.0% | |
| ACTGGAGTAGCAGCAGGAAC+AGG | + | chr8_1:12584685-12584704 | None:intergenic | 55.0% | |
| !! | TTTTCAGGGGAATGGGACCC+TGG | + | chr8_1:12585007-12585026 | None:intergenic | 55.0% |
| TCCCATTCCCCTGAAAACCG+AGG | - | chr8_1:12585010-12585029 | Msa1179260:intron | 55.0% | |
| !! | CCCTCGGTTTTCAGGGGAAT+GGG | + | chr8_1:12585014-12585033 | None:intergenic | 55.0% |
| CCCATTCCCCTGAAAACCGA+GGG | - | chr8_1:12585011-12585030 | Msa1179260:intron | 55.0% | |
| !! | ACCCTCGGTTTTCAGGGGAA+TGG | + | chr8_1:12585015-12585034 | None:intergenic | 55.0% |
| ! | GGCGTTAACCCTCGGTTTTC+AGG | + | chr8_1:12585022-12585041 | None:intergenic | 55.0% |
| AAGGGGGAATTGTGGAGACC+AGG | + | chr8_1:12585130-12585149 | None:intergenic | 55.0% | |
| AGGTTGTCAGTCGCGGATAG+CGG | - | chr8_1:12585349-12585368 | Msa1179260:intron | 55.0% | |
| TCTGGCAACTGAGGCAGTCA+AGG | - | chr8_1:12587835-12587854 | Msa1179260:CDS | 55.0% | |
| AACTGAGGCAGTCAAGGCGA+CGG | - | chr8_1:12587841-12587860 | Msa1179260:CDS | 55.0% | |
| GAAGAAGCAGCAGCAGCAGG+AGG | + | chr8_1:12584661-12584680 | None:intergenic | 60.0% | |
| GGAGAAGAAGCAGCAGCAGC+AGG | + | chr8_1:12584664-12584683 | None:intergenic | 60.0% | |
| TGGGTGTCTGGGTTCGATCC+TGG | - | chr8_1:12585109-12585128 | Msa1179260:intron | 60.0% | |
| TGTAGTCGTGGGGGTGAGAG+CGG | - | chr8_1:12585602-12585621 | Msa1179260:intron | 60.0% | |
| GTCGTAGTCCTGGGCATGAG+AGG | - | chr8_1:12585725-12585744 | Msa1179260:intron | 60.0% | |
| ! | GGTTGGCCCAATGGATGCAC+AGG | + | chr8_1:12587468-12587487 | None:intergenic | 60.0% |
| CCATTGGGCCAACCTTGCCA+CGG | - | chr8_1:12587474-12587493 | Msa1179260:intron | 60.0% | |
| CATTGGGCCAACCTTGCCAC+GGG | - | chr8_1:12587475-12587494 | Msa1179260:intron | 60.0% | |
| ATTGGGCCAACCTTGCCACG+GGG | - | chr8_1:12587476-12587495 | Msa1179260:intron | 60.0% | |
| ! | TTAAGAGCGCAGAGTCCCCG+TGG | + | chr8_1:12587494-12587513 | None:intergenic | 60.0% |
| ! | CCGTGGCAAGGTTGGCCCAA+TGG | + | chr8_1:12587477-12587496 | None:intergenic | 65.0% |
| CAGAGTCCCCGTGGCAAGGT+TGG | + | chr8_1:12587485-12587504 | None:intergenic | 65.0% | |
| AGCGCAGAGTCCCCGTGGCA+AGG | + | chr8_1:12587489-12587508 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 12584274 | 12588282 | 12584274 | ID=Msa1179260;Name=Msa1179260 |
| chr8_1 | mRNA | 12584274 | 12588282 | 12584274 | ID=Msa1179260-mRNA-1;Parent=Msa1179260;Name=Msa1179260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=74|1|1|1|1|1|6|195|314 |
| chr8_1 | exon | 12584274 | 12584527 | 12584274 | ID=Msa1179260-mRNA-1:exon:4502;Parent=Msa1179260-mRNA-1 |
| chr8_1 | exon | 12584624 | 12584939 | 12584624 | ID=Msa1179260-mRNA-1:exon:4501;Parent=Msa1179260-mRNA-1 |
| chr8_1 | exon | 12585851 | 12585934 | 12585851 | ID=Msa1179260-mRNA-1:exon:4500;Parent=Msa1179260-mRNA-1 |
| chr8_1 | exon | 12586218 | 12586302 | 12586218 | ID=Msa1179260-mRNA-1:exon:4499;Parent=Msa1179260-mRNA-1 |
| chr8_1 | exon | 12587711 | 12587961 | 12587711 | ID=Msa1179260-mRNA-1:exon:4498;Parent=Msa1179260-mRNA-1 |
| chr8_1 | exon | 12588059 | 12588282 | 12588059 | ID=Msa1179260-mRNA-1:exon:4497;Parent=Msa1179260-mRNA-1 |
| chr8_1 | five_prime_UTR | 12588209 | 12588282 | 12588209 | ID=Msa1179260-mRNA-1:five_prime_utr;Parent=Msa1179260-mRNA-1 |
| chr8_1 | CDS | 12588059 | 12588208 | 12588059 | ID=Msa1179260-mRNA-1:cds;Parent=Msa1179260-mRNA-1 |
| chr8_1 | CDS | 12587711 | 12587961 | 12587711 | ID=Msa1179260-mRNA-1:cds;Parent=Msa1179260-mRNA-1 |
| chr8_1 | CDS | 12586218 | 12586302 | 12586218 | ID=Msa1179260-mRNA-1:cds;Parent=Msa1179260-mRNA-1 |
| chr8_1 | CDS | 12585851 | 12585934 | 12585851 | ID=Msa1179260-mRNA-1:cds;Parent=Msa1179260-mRNA-1 |
| chr8_1 | CDS | 12584624 | 12584939 | 12584624 | ID=Msa1179260-mRNA-1:cds;Parent=Msa1179260-mRNA-1 |
| chr8_1 | CDS | 12584469 | 12584527 | 12584469 | ID=Msa1179260-mRNA-1:cds;Parent=Msa1179260-mRNA-1 |
| chr8_1 | three_prime_UTR | 12584274 | 12584468 | 12584274 | ID=Msa1179260-mRNA-1:three_prime_utr;Parent=Msa1179260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
