Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180270 | XP_013444227.1 | 85.897 | 156 | 17 | 1 | 1 | 151 | 1 | 156 | 3.19e-92 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180270 | sp|F4IXJ7|MED6_ARATH | 69.355 | 124 | 38 | 0 | 14 | 137 | 24 | 147 | 5.25e-60 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1180270 | TR | MED6 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180270 | MtrunA17_Chr8g0341301 | 85.897 | 156 | 17 | 1 | 1 | 151 | 1 | 156 | 2.93e-96 | 278 |
| Msa1180270 | MtrunA17_Chr8g0356941 | 76.087 | 92 | 17 | 1 | 65 | 151 | 1 | 92 | 1.34e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180270 | AT3G21350.1 | 69.355 | 124 | 38 | 0 | 14 | 137 | 24 | 147 | 2.24e-61 | 190 |
| Msa1180270 | AT3G21350.2 | 69.355 | 124 | 38 | 0 | 14 | 137 | 24 | 147 | 5.34e-61 | 190 |
Find 44 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTGCTTATTATATTT+TGG | 0.131733 | 8_1:+14066951 | Msa1180270:CDS |
| AGCATTGGAGTAACTTTATC+AGG | 0.301759 | 8_1:-14066934 | None:intergenic |
| TATGCTTCAGAGATCAATTA+TGG | 0.306984 | 8_1:+14066609 | Msa1180270:CDS |
| CACAAAGGTTCTTTGTGTAT+TGG | 0.337657 | 8_1:-14067811 | None:intergenic |
| ATTCCGGTCATGTCGGTTCC+CGG | 0.388633 | 8_1:-14066587 | None:intergenic |
| CCGTCTAACATTCCCATTCC+CGG | 0.401387 | 8_1:-14066542 | None:intergenic |
| CTTTATCACCTTTCTACGAT+TGG | 0.408696 | 8_1:+14066678 | Msa1180270:CDS |
| GAGATACAAACTAAAGTGTA+AGG | 0.415746 | 8_1:-14067870 | None:intergenic |
| TTGATCTCTGAAGCATATTC+CGG | 0.424128 | 8_1:-14066603 | None:intergenic |
| TAGGGTTTCAGGAAAATGAT+TGG | 0.437092 | 8_1:+14066841 | Msa1180270:intron |
| GTGGATGATGAGAACGCATT+CGG | 0.442890 | 8_1:-14066721 | None:intergenic |
| GAGATGGCGACACCGGGAAT+GGG | 0.471762 | 8_1:+14066530 | Msa1180270:exon |
| ATTCCCGGTGTCGCCATCTC+CGG | 0.472757 | 8_1:-14066527 | None:intergenic |
| GGAGATGGCGACACCGGGAA+TGG | 0.476646 | 8_1:+14066529 | Msa1180270:exon |
| ATATGTGTTGAGTGAAGTTA+TGG | 0.488473 | 8_1:+14066870 | Msa1180270:CDS |
| AGTACCGACGGCGCAACCAC+CGG | 0.490492 | 8_1:+14066568 | Msa1180270:CDS |
| TACTGACATTTAGGTCATAG+AGG | 0.493321 | 8_1:+14067786 | Msa1180270:intron |
| GTTCCCGGTGGTTGCGCCGT+CGG | 0.494514 | 8_1:-14066572 | None:intergenic |
| CAATACACAAAGAACCTTTG+TGG | 0.499936 | 8_1:+14067812 | Msa1180270:CDS |
| AAAATATAATAAGCAAGCAT+TGG | 0.508033 | 8_1:-14066949 | None:intergenic |
| GTACCGACGGCGCAACCACC+GGG | 0.520900 | 8_1:+14066569 | Msa1180270:CDS |
| GGTGTCGCCATCTCCGGCAC+CGG | 0.523288 | 8_1:-14066521 | None:intergenic |
| CACTGAGAGAGAACCGGTGC+CGG | 0.524691 | 8_1:+14066508 | Msa1180270:five_prime_UTR |
| CCACCGGGAACCGACATGAC+CGG | 0.527398 | 8_1:+14066584 | Msa1180270:CDS |
| TCACAGCACTGAGAGAGAAC+CGG | 0.539374 | 8_1:+14066502 | Msa1180270:five_prime_UTR |
| GAGAGAACCGGTGCCGGAGA+TGG | 0.543791 | 8_1:+14066514 | Msa1180270:exon |
| GTGCCGGAGATGGCGACACC+GGG | 0.551916 | 8_1:+14066524 | Msa1180270:exon |
| GGTGCCGGAGATGGCGACAC+CGG | 0.565787 | 8_1:+14066523 | Msa1180270:exon |
| TTAGAAGTCCAATCGTAGAA+AGG | 0.566992 | 8_1:-14066686 | None:intergenic |
| AGATACAAACTAAAGTGTAA+GGG | 0.583620 | 8_1:-14067869 | None:intergenic |
| TTATCATGAAGAAGCAGAAG+AGG | 0.585561 | 8_1:+14066905 | Msa1180270:CDS |
| TATCATGAAGAAGCAGAAGA+GGG | 0.593643 | 8_1:+14066906 | Msa1180270:CDS |
| GTTAGACGGCGGAGTACCGA+CGG | 0.600181 | 8_1:+14066556 | Msa1180270:CDS |
| AATTACGTACGTGAGTTGAG+AGG | 0.602924 | 8_1:-14066750 | None:intergenic |
| GATACAAACTAAAGTGTAAG+GGG | 0.604846 | 8_1:-14067868 | None:intergenic |
| CCGGGAATGGGAATGTTAGA+CGG | 0.617152 | 8_1:+14066542 | Msa1180270:CDS |
| GAAGCATATTCCGGTCATGT+CGG | 0.643592 | 8_1:-14066594 | None:intergenic |
| AAGACGAGGTTACGATCGAG+TGG | 0.652262 | 8_1:-14066644 | None:intergenic |
| GTGAGTTGAGAGGAATCGAG+TGG | 0.672007 | 8_1:-14066740 | None:intergenic |
| CCGGTCATGTCGGTTCCCGG+TGG | 0.674640 | 8_1:-14066584 | None:intergenic |
| AAGCGAAGTAATCGAAGACG+AGG | 0.677731 | 8_1:-14066658 | None:intergenic |
| AGACGAGGTTACGATCGAGT+GGG | 0.681742 | 8_1:-14066643 | None:intergenic |
| ACAAACTAAAGTGTAAGGGG+AGG | 0.687946 | 8_1:-14067865 | None:intergenic |
| GGAATGGGAATGTTAGACGG+CGG | 0.769986 | 8_1:+14066545 | Msa1180270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATTTAAAGCAATTT+CGG | + | chr8_1:14067385-14067404 | Msa1180270:intron | 10.0% |
| !!! | AAAATTATTTAAAGCAATTT+CGG | + | chr8_1:14067385-14067404 | Msa1180270:intron | 10.0% |
| !! | TTGAATAAAATTAGAAAAGA+TGG | - | chr8_1:14067054-14067073 | None:intergenic | 15.0% |
| !!! | AACTGATAGTTATTTTATTT+TGG | + | chr8_1:14067522-14067541 | Msa1180270:intron | 15.0% |
| !! | TTGAATAAAATTAGAAAAGA+TGG | - | chr8_1:14067054-14067073 | None:intergenic | 15.0% |
| !!! | AACTGATAGTTATTTTATTT+TGG | + | chr8_1:14067522-14067541 | Msa1180270:intron | 15.0% |
| !! | TGAAATTGAGAATGAAAATT+AGG | - | chr8_1:14066793-14066812 | None:intergenic | 20.0% |
| !! | AAAATATAATAAGCAAGCAT+TGG | - | chr8_1:14066952-14066971 | None:intergenic | 20.0% |
| !!! | AATGCTTGCTTATTATATTT+TGG | + | chr8_1:14066951-14066970 | Msa1180270:CDS | 20.0% |
| !! | CTAACGTTACATTAAAAATT+GGG | - | chr8_1:14067606-14067625 | None:intergenic | 20.0% |
| !! | TCTAACGTTACATTAAAAAT+TGG | - | chr8_1:14067607-14067626 | None:intergenic | 20.0% |
| !! | TGAAATGGATATGTTTAATA+TGG | + | chr8_1:14067746-14067765 | Msa1180270:intron | 20.0% |
| !! | TGAAATTGAGAATGAAAATT+AGG | - | chr8_1:14066793-14066812 | None:intergenic | 20.0% |
| !! | AAAATATAATAAGCAAGCAT+TGG | - | chr8_1:14066952-14066971 | None:intergenic | 20.0% |
| !!! | AATGCTTGCTTATTATATTT+TGG | + | chr8_1:14066951-14066970 | Msa1180270:CDS | 20.0% |
| !! | CTAACGTTACATTAAAAATT+GGG | - | chr8_1:14067606-14067625 | None:intergenic | 20.0% |
| !! | TCTAACGTTACATTAAAAAT+TGG | - | chr8_1:14067607-14067626 | None:intergenic | 20.0% |
| !! | TGAAATGGATATGTTTAATA+TGG | + | chr8_1:14067746-14067765 | Msa1180270:intron | 20.0% |
| ! | AATGAAAATTAGGTTAGGTT+AGG | - | chr8_1:14066783-14066802 | None:intergenic | 25.0% |
| ! | TTGAGAATGAAAATTAGGTT+AGG | - | chr8_1:14066788-14066807 | None:intergenic | 25.0% |
| !!! | TTTCACTCTTAACCATTTTT+AGG | + | chr8_1:14066822-14066841 | Msa1180270:intron | 25.0% |
| !!! | TTCACTCTTAACCATTTTTA+GGG | + | chr8_1:14066823-14066842 | Msa1180270:intron | 25.0% |
| ! | TTCTTCATGATAAAAAGATG+AGG | - | chr8_1:14066898-14066917 | None:intergenic | 25.0% |
| !!! | CTTGCTTATTATATTTTGGA+TGG | + | chr8_1:14066955-14066974 | Msa1180270:CDS | 25.0% |
| ! | ACTTTAGATTGAATATTCAC+CGG | + | chr8_1:14067345-14067364 | Msa1180270:intron | 25.0% |
| !! | TTCAGTCTATTTTCTTTTTC+CGG | - | chr8_1:14067367-14067386 | None:intergenic | 25.0% |
| !! | TTATTTAAAGCAATTTCGGT+TGG | + | chr8_1:14067389-14067408 | Msa1180270:intron | 25.0% |
| ! | TTAAAAATTGGGTGAAAAGT+AGG | - | chr8_1:14067595-14067614 | None:intergenic | 25.0% |
| !!! | GTAACGTTAGATAATTTGTT+TGG | + | chr8_1:14067616-14067635 | Msa1180270:intron | 25.0% |
| ! | TGGTTATGAACTTATGTATT+TGG | + | chr8_1:14067636-14067655 | Msa1180270:intron | 25.0% |
| !!! | ATGTTGATTTACTGACATTT+AGG | + | chr8_1:14067777-14067796 | Msa1180270:intron | 25.0% |
| ! | AAAAAATATGAACACCACAA+AGG | - | chr8_1:14067829-14067848 | None:intergenic | 25.0% |
| ! | AATGAAAATTAGGTTAGGTT+AGG | - | chr8_1:14066783-14066802 | None:intergenic | 25.0% |
| ! | TTGAGAATGAAAATTAGGTT+AGG | - | chr8_1:14066788-14066807 | None:intergenic | 25.0% |
| !!! | TTTCACTCTTAACCATTTTT+AGG | + | chr8_1:14066822-14066841 | Msa1180270:intron | 25.0% |
| !!! | TTCACTCTTAACCATTTTTA+GGG | + | chr8_1:14066823-14066842 | Msa1180270:intron | 25.0% |
| ! | TTCTTCATGATAAAAAGATG+AGG | - | chr8_1:14066898-14066917 | None:intergenic | 25.0% |
| !!! | CTTGCTTATTATATTTTGGA+TGG | + | chr8_1:14066955-14066974 | Msa1180270:CDS | 25.0% |
| ! | ACTTTAGATTGAATATTCAC+CGG | + | chr8_1:14067345-14067364 | Msa1180270:intron | 25.0% |
| !! | TTCAGTCTATTTTCTTTTTC+CGG | - | chr8_1:14067367-14067386 | None:intergenic | 25.0% |
| !! | TTATTTAAAGCAATTTCGGT+TGG | + | chr8_1:14067389-14067408 | Msa1180270:intron | 25.0% |
| ! | TTAAAAATTGGGTGAAAAGT+AGG | - | chr8_1:14067595-14067614 | None:intergenic | 25.0% |
| !!! | GTAACGTTAGATAATTTGTT+TGG | + | chr8_1:14067616-14067635 | Msa1180270:intron | 25.0% |
| ! | TGGTTATGAACTTATGTATT+TGG | + | chr8_1:14067636-14067655 | Msa1180270:intron | 25.0% |
| !!! | ATGTTGATTTACTGACATTT+AGG | + | chr8_1:14067777-14067796 | Msa1180270:intron | 25.0% |
| ! | AAAAAATATGAACACCACAA+AGG | - | chr8_1:14067829-14067848 | None:intergenic | 25.0% |
| TATGCTTCAGAGATCAATTA+TGG | + | chr8_1:14066609-14066628 | Msa1180270:CDS | 30.0% | |
| AATTAGGTTAGGTTAGGTTA+CGG | - | chr8_1:14066777-14066796 | None:intergenic | 30.0% | |
| !!! | TTAACCATTTTTAGGGTTTC+AGG | + | chr8_1:14066830-14066849 | Msa1180270:intron | 30.0% |
| ! | TTTTCCTGAAACCCTAAAAA+TGG | - | chr8_1:14066837-14066856 | None:intergenic | 30.0% |
| ATATGTGTTGAGTGAAGTTA+TGG | + | chr8_1:14066870-14066889 | Msa1180270:CDS | 30.0% | |
| GCAAAAACATTGGATAATTG+AGG | - | chr8_1:14066997-14067016 | None:intergenic | 30.0% | |
| AATTCTAGCAGCAAAAACAT+TGG | - | chr8_1:14067007-14067026 | None:intergenic | 30.0% | |
| AATCTCAAATATTAGTGTCG+TGG | + | chr8_1:14067138-14067157 | Msa1180270:intron | 30.0% | |
| !!! | NGGAGTTGTTTTTAAGTTTC+TGG | + | chr8_1:14067294-14067313 | Msa1180270:intron | 30.0% |
| TATGCTTCAGAGATCAATTA+TGG | + | chr8_1:14066609-14066628 | Msa1180270:CDS | 30.0% | |
| AATTAGGTTAGGTTAGGTTA+CGG | - | chr8_1:14066777-14066796 | None:intergenic | 30.0% | |
| !!! | TTAACCATTTTTAGGGTTTC+AGG | + | chr8_1:14066830-14066849 | Msa1180270:intron | 30.0% |
| ! | TTTTCCTGAAACCCTAAAAA+TGG | - | chr8_1:14066837-14066856 | None:intergenic | 30.0% |
| ATATGTGTTGAGTGAAGTTA+TGG | + | chr8_1:14066870-14066889 | Msa1180270:CDS | 30.0% | |
| GCAAAAACATTGGATAATTG+AGG | - | chr8_1:14066997-14067016 | None:intergenic | 30.0% | |
| AATTCTAGCAGCAAAAACAT+TGG | - | chr8_1:14067007-14067026 | None:intergenic | 30.0% | |
| AATCTCAAATATTAGTGTCG+TGG | + | chr8_1:14067138-14067157 | Msa1180270:intron | 30.0% | |
| !!! | NGGAGTTGTTTTTAAGTTTC+TGG | + | chr8_1:14067294-14067313 | Msa1180270:intron | 30.0% |
| !! | TTGATCTCTGAAGCATATTC+CGG | - | chr8_1:14066606-14066625 | None:intergenic | 35.0% |
| CTTTATCACCTTTCTACGAT+TGG | + | chr8_1:14066678-14066697 | Msa1180270:CDS | 35.0% | |
| TTAGAAGTCCAATCGTAGAA+AGG | - | chr8_1:14066689-14066708 | None:intergenic | 35.0% | |
| ATTAGGTTAGGTTAGGTTAC+GGG | - | chr8_1:14066776-14066795 | None:intergenic | 35.0% | |
| TAGGGTTTCAGGAAAATGAT+TGG | + | chr8_1:14066841-14066860 | Msa1180270:intron | 35.0% | |
| TTATCATGAAGAAGCAGAAG+AGG | + | chr8_1:14066905-14066924 | Msa1180270:CDS | 35.0% | |
| TATCATGAAGAAGCAGAAGA+GGG | + | chr8_1:14066906-14066925 | Msa1180270:CDS | 35.0% | |
| ! | AGCATTGGAGTAACTTTATC+AGG | - | chr8_1:14066937-14066956 | None:intergenic | 35.0% |
| TCAACAAACCTTATGTAGAC+CGG | + | chr8_1:14067070-14067089 | Msa1180270:intron | 35.0% | |
| ATTTCAACAACCGAAAAAGG+AGG | - | chr8_1:14067732-14067751 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTCGGTTGTTGAAA+TGG | + | chr8_1:14067731-14067750 | Msa1180270:intron | 35.0% |
| TCCATTTCAACAACCGAAAA+AGG | - | chr8_1:14067735-14067754 | None:intergenic | 35.0% | |
| TACTGACATTTAGGTCATAG+AGG | + | chr8_1:14067786-14067805 | Msa1180270:intron | 35.0% | |
| CACAAAGGTTCTTTGTGTAT+TGG | - | chr8_1:14067814-14067833 | None:intergenic | 35.0% | |
| CAATACACAAAGAACCTTTG+TGG | + | chr8_1:14067812-14067831 | Msa1180270:CDS | 35.0% | |
| !! | TTGATCTCTGAAGCATATTC+CGG | - | chr8_1:14066606-14066625 | None:intergenic | 35.0% |
| CTTTATCACCTTTCTACGAT+TGG | + | chr8_1:14066678-14066697 | Msa1180270:CDS | 35.0% | |
| TTAGAAGTCCAATCGTAGAA+AGG | - | chr8_1:14066689-14066708 | None:intergenic | 35.0% | |
| ATTAGGTTAGGTTAGGTTAC+GGG | - | chr8_1:14066776-14066795 | None:intergenic | 35.0% | |
| TAGGGTTTCAGGAAAATGAT+TGG | + | chr8_1:14066841-14066860 | Msa1180270:intron | 35.0% | |
| TTATCATGAAGAAGCAGAAG+AGG | + | chr8_1:14066905-14066924 | Msa1180270:CDS | 35.0% | |
| TATCATGAAGAAGCAGAAGA+GGG | + | chr8_1:14066906-14066925 | Msa1180270:CDS | 35.0% | |
| ! | AGCATTGGAGTAACTTTATC+AGG | - | chr8_1:14066937-14066956 | None:intergenic | 35.0% |
| TCAACAAACCTTATGTAGAC+CGG | + | chr8_1:14067070-14067089 | Msa1180270:intron | 35.0% | |
| ATTTCAACAACCGAAAAAGG+AGG | - | chr8_1:14067732-14067751 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTCGGTTGTTGAAA+TGG | + | chr8_1:14067731-14067750 | Msa1180270:intron | 35.0% |
| TCCATTTCAACAACCGAAAA+AGG | - | chr8_1:14067735-14067754 | None:intergenic | 35.0% | |
| TACTGACATTTAGGTCATAG+AGG | + | chr8_1:14067786-14067805 | Msa1180270:intron | 35.0% | |
| CACAAAGGTTCTTTGTGTAT+TGG | - | chr8_1:14067814-14067833 | None:intergenic | 35.0% | |
| CAATACACAAAGAACCTTTG+TGG | + | chr8_1:14067812-14067831 | Msa1180270:CDS | 35.0% | |
| ! | AATTACGTACGTGAGTTGAG+AGG | - | chr8_1:14066753-14066772 | None:intergenic | 40.0% |
| CTCAAATATTAGTGTCGTGG+CGG | + | chr8_1:14067141-14067160 | Msa1180270:intron | 40.0% | |
| !! | GGTTCACTGGTTTGAAAACT+TGG | - | chr8_1:14067553-14067572 | None:intergenic | 40.0% |
| ! | TCGTGTAAGTCCTCCTTTTT+CGG | + | chr8_1:14067719-14067738 | Msa1180270:intron | 40.0% |
| ! | AATTACGTACGTGAGTTGAG+AGG | - | chr8_1:14066753-14066772 | None:intergenic | 40.0% |
| CTCAAATATTAGTGTCGTGG+CGG | + | chr8_1:14067141-14067160 | Msa1180270:intron | 40.0% | |
| !! | GGTTCACTGGTTTGAAAACT+TGG | - | chr8_1:14067553-14067572 | None:intergenic | 40.0% |
| ! | TCGTGTAAGTCCTCCTTTTT+CGG | + | chr8_1:14067719-14067738 | Msa1180270:intron | 40.0% |
| GAAGCATATTCCGGTCATGT+CGG | - | chr8_1:14066597-14066616 | None:intergenic | 45.0% | |
| AAGCGAAGTAATCGAAGACG+AGG | - | chr8_1:14066661-14066680 | None:intergenic | 45.0% | |
| GTGGATGATGAGAACGCATT+CGG | - | chr8_1:14066724-14066743 | None:intergenic | 45.0% | |
| AATGTCGATGTGTCAGTGTC+CGG | - | chr8_1:14067092-14067111 | None:intergenic | 45.0% | |
| AAATATTAGTGTCGTGGCGG+TGG | + | chr8_1:14067144-14067163 | Msa1180270:intron | 45.0% | |
| GGTTTGATGAGCAACTAGAG+TGG | - | chr8_1:14067574-14067593 | None:intergenic | 45.0% | |
| GATACCTCCCCTTACACTTT+AGG | + | chr8_1:14067861-14067880 | Msa1180270:CDS | 45.0% | |
| GAAGCATATTCCGGTCATGT+CGG | - | chr8_1:14066597-14066616 | None:intergenic | 45.0% | |
| AAGCGAAGTAATCGAAGACG+AGG | - | chr8_1:14066661-14066680 | None:intergenic | 45.0% | |
| GTGGATGATGAGAACGCATT+CGG | - | chr8_1:14066724-14066743 | None:intergenic | 45.0% | |
| AATGTCGATGTGTCAGTGTC+CGG | - | chr8_1:14067092-14067111 | None:intergenic | 45.0% | |
| AAATATTAGTGTCGTGGCGG+TGG | + | chr8_1:14067144-14067163 | Msa1180270:intron | 45.0% | |
| GGTTTGATGAGCAACTAGAG+TGG | - | chr8_1:14067574-14067593 | None:intergenic | 45.0% | |
| ! | TCACAGCACTGAGAGAGAAC+CGG | + | chr8_1:14066502-14066521 | Msa1180270:five_prime_UTR | 50.0% |
| CCGTCTAACATTCCCATTCC+CGG | - | chr8_1:14066545-14066564 | None:intergenic | 50.0% | |
| CCGGGAATGGGAATGTTAGA+CGG | + | chr8_1:14066542-14066561 | Msa1180270:CDS | 50.0% | |
| GGAATGGGAATGTTAGACGG+CGG | + | chr8_1:14066545-14066564 | Msa1180270:CDS | 50.0% | |
| AGACGAGGTTACGATCGAGT+GGG | - | chr8_1:14066646-14066665 | None:intergenic | 50.0% | |
| AAGACGAGGTTACGATCGAG+TGG | - | chr8_1:14066647-14066666 | None:intergenic | 50.0% | |
| ! | GTGAGTTGAGAGGAATCGAG+TGG | - | chr8_1:14066743-14066762 | None:intergenic | 50.0% |
| GTCAGTGTCCGGTCTACATA+AGG | - | chr8_1:14067081-14067100 | None:intergenic | 50.0% | |
| GAGCAACTAGAGTGGTTCAC+TGG | - | chr8_1:14067566-14067585 | None:intergenic | 50.0% | |
| ! | TCACAGCACTGAGAGAGAAC+CGG | + | chr8_1:14066502-14066521 | Msa1180270:five_prime_UTR | 50.0% |
| CCGTCTAACATTCCCATTCC+CGG | - | chr8_1:14066545-14066564 | None:intergenic | 50.0% | |
| CCGGGAATGGGAATGTTAGA+CGG | + | chr8_1:14066542-14066561 | Msa1180270:CDS | 50.0% | |
| GGAATGGGAATGTTAGACGG+CGG | + | chr8_1:14066545-14066564 | Msa1180270:CDS | 50.0% | |
| AGACGAGGTTACGATCGAGT+GGG | - | chr8_1:14066646-14066665 | None:intergenic | 50.0% | |
| AAGACGAGGTTACGATCGAG+TGG | - | chr8_1:14066647-14066666 | None:intergenic | 50.0% | |
| ! | GTGAGTTGAGAGGAATCGAG+TGG | - | chr8_1:14066743-14066762 | None:intergenic | 50.0% |
| GTCAGTGTCCGGTCTACATA+AGG | - | chr8_1:14067081-14067100 | None:intergenic | 50.0% | |
| GAGCAACTAGAGTGGTTCAC+TGG | - | chr8_1:14067566-14067585 | None:intergenic | 50.0% | |
| !! | ATTCCGGTCATGTCGGTTCC+CGG | - | chr8_1:14066590-14066609 | None:intergenic | 55.0% |
| !! | ATTCCGGTCATGTCGGTTCC+CGG | - | chr8_1:14066590-14066609 | None:intergenic | 55.0% |
| CACTGAGAGAGAACCGGTGC+CGG | + | chr8_1:14066508-14066527 | Msa1180270:five_prime_UTR | 60.0% | |
| !! | ATTCCCGGTGTCGCCATCTC+CGG | - | chr8_1:14066530-14066549 | None:intergenic | 60.0% |
| GAGATGGCGACACCGGGAAT+GGG | + | chr8_1:14066530-14066549 | Msa1180270:exon | 60.0% | |
| !! | GTTAGACGGCGGAGTACCGA+CGG | + | chr8_1:14066556-14066575 | Msa1180270:CDS | 60.0% |
| CACTGAGAGAGAACCGGTGC+CGG | + | chr8_1:14066508-14066527 | Msa1180270:five_prime_UTR | 60.0% | |
| !! | ATTCCCGGTGTCGCCATCTC+CGG | - | chr8_1:14066530-14066549 | None:intergenic | 60.0% |
| GAGATGGCGACACCGGGAAT+GGG | + | chr8_1:14066530-14066549 | Msa1180270:exon | 60.0% | |
| !! | GTTAGACGGCGGAGTACCGA+CGG | + | chr8_1:14066556-14066575 | Msa1180270:CDS | 60.0% |
| ! | GAGAGAACCGGTGCCGGAGA+TGG | + | chr8_1:14066514-14066533 | Msa1180270:exon | 65.0% |
| GGAGATGGCGACACCGGGAA+TGG | + | chr8_1:14066529-14066548 | Msa1180270:exon | 65.0% | |
| !! | AGTACCGACGGCGCAACCAC+CGG | + | chr8_1:14066568-14066587 | Msa1180270:CDS | 65.0% |
| CCACCGGGAACCGACATGAC+CGG | + | chr8_1:14066584-14066603 | Msa1180270:CDS | 65.0% | |
| ! | GAGAGAACCGGTGCCGGAGA+TGG | + | chr8_1:14066514-14066533 | Msa1180270:exon | 65.0% |
| GGAGATGGCGACACCGGGAA+TGG | + | chr8_1:14066529-14066548 | Msa1180270:exon | 65.0% | |
| !! | AGTACCGACGGCGCAACCAC+CGG | + | chr8_1:14066568-14066587 | Msa1180270:CDS | 65.0% |
| CCACCGGGAACCGACATGAC+CGG | + | chr8_1:14066584-14066603 | Msa1180270:CDS | 65.0% | |
| ! | GGTGTCGCCATCTCCGGCAC+CGG | - | chr8_1:14066524-14066543 | None:intergenic | 70.0% |
| ! | GGTGCCGGAGATGGCGACAC+CGG | + | chr8_1:14066523-14066542 | Msa1180270:exon | 70.0% |
| GTGCCGGAGATGGCGACACC+GGG | + | chr8_1:14066524-14066543 | Msa1180270:exon | 70.0% | |
| ! | GTACCGACGGCGCAACCACC+GGG | + | chr8_1:14066569-14066588 | Msa1180270:CDS | 70.0% |
| GTTCCCGGTGGTTGCGCCGT+CGG | - | chr8_1:14066575-14066594 | None:intergenic | 70.0% | |
| !! | CCGGTCATGTCGGTTCCCGG+TGG | - | chr8_1:14066587-14066606 | None:intergenic | 70.0% |
| ! | GGTGTCGCCATCTCCGGCAC+CGG | - | chr8_1:14066524-14066543 | None:intergenic | 70.0% |
| ! | GGTGCCGGAGATGGCGACAC+CGG | + | chr8_1:14066523-14066542 | Msa1180270:exon | 70.0% |
| GTGCCGGAGATGGCGACACC+GGG | + | chr8_1:14066524-14066543 | Msa1180270:exon | 70.0% | |
| ! | GTACCGACGGCGCAACCACC+GGG | + | chr8_1:14066569-14066588 | Msa1180270:CDS | 70.0% |
| GTTCCCGGTGGTTGCGCCGT+CGG | - | chr8_1:14066575-14066594 | None:intergenic | 70.0% | |
| !! | CCGGTCATGTCGGTTCCCGG+TGG | - | chr8_1:14066587-14066606 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 14066453 | 14067882 | 14066453 | ID=Msa1180270;Name=Msa1180270 |
| chr8_1 | mRNA | 14066453 | 14067882 | 14066453 | ID=Msa1180270-mRNA-1;Parent=Msa1180270;Name=Msa1180270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=80|0.5|0.33|0.66|0.5|0.33|3|0|156 |
| chr8_1 | exon | 14066453 | 14066762 | 14066453 | ID=Msa1180270-mRNA-1:exon:5160;Parent=Msa1180270-mRNA-1 |
| chr8_1 | exon | 14066852 | 14067008 | 14066852 | ID=Msa1180270-mRNA-1:exon:5161;Parent=Msa1180270-mRNA-1 |
| chr8_1 | exon | 14067799 | 14067882 | 14067799 | ID=Msa1180270-mRNA-1:exon:5162;Parent=Msa1180270-mRNA-1 |
| chr8_1 | five_prime_UTR | 14066453 | 14066532 | 14066453 | ID=Msa1180270-mRNA-1:five_prime_utr;Parent=Msa1180270-mRNA-1 |
| chr8_1 | CDS | 14066533 | 14066762 | 14066533 | ID=Msa1180270-mRNA-1:cds;Parent=Msa1180270-mRNA-1 |
| chr8_1 | CDS | 14066852 | 14067008 | 14066852 | ID=Msa1180270-mRNA-1:cds;Parent=Msa1180270-mRNA-1 |
| chr8_1 | CDS | 14067799 | 14067882 | 14067799 | ID=Msa1180270-mRNA-1:cds;Parent=Msa1180270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
