AlfalfaGEDB | Msa1184130

M. sativa cultivar zhongmu-4 / Msa1184130

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1184130	GAU40839.1	69.004	813	222	7	7	805	29	825	0.0	1172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1184130	sp\|Q9SWG3\|FAR1_ARATH	32.555	728	448	14	39	750	48	748	1.17e-126	404

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1184130	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1184130	MtrunA17_Chr2g0296781	73.109	714	179	5	48	749	3	715	0.0	1085
Msa1184130	MtrunA17_Chr6g0477261	71.097	647	164	5	157	781	1	646	0.0	951
Msa1184130	MtrunA17_Chr1g0196541	60.598	769	258	6	48	811	3	731	0.0	934
Msa1184130	MtrunA17_Chr5g0441581	44.928	690	355	10	26	703	12	688	0.0	583
Msa1184130	MtrunA17_Chr2g0291581	38.163	566	331	9	42	602	71	622	1.25e-124	391
Msa1184130	MtrunA17_Chr1g0207551	31.937	764	454	13	39	768	31	762	3.72e-123	391
Msa1184130	MtrunA17_Chr2g0329031	35.484	589	347	10	48	627	20	584	4.27e-121	384
Msa1184130	MtrunA17_Chr5g0448761	36.915	577	342	12	39	601	57	625	2.47e-119	380
Msa1184130	MtrunA17_Chr3g0080351	35.041	605	342	10	41	627	75	646	1.24e-117	377
Msa1184130	MtrunA17_Chr1g0202341	36.174	575	340	12	41	602	50	610	3.45e-114	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1184130	AT4G15090.1	32.555	728	448	14	39	750	48	748	1.19e-127	404
Msa1184130	AT4G15090.5	32.555	728	448	14	39	750	48	748	1.19e-127	404
Msa1184130	AT4G15090.3	32.555	728	448	14	39	750	48	748	1.19e-127	404
Msa1184130	AT4G15090.2	32.555	728	448	14	39	750	48	748	1.19e-127	404
Msa1184130	AT4G15090.4	32.555	728	448	14	39	750	48	748	1.19e-127	404
Msa1184130	AT1G76320.3	36.380	569	334	11	48	608	3	551	1.03e-116	370
Msa1184130	AT1G76320.1	36.585	574	326	12	48	608	3	551	1.15e-116	372
Msa1184130	AT1G76320.4	36.585	574	326	12	48	608	3	551	1.15e-116	372
Msa1184130	AT1G76320.2	36.585	574	326	12	48	608	3	551	1.58e-116	372
Msa1184130	AT4G38180.1	34.576	590	362	8	25	601	56	634	2.68e-114	367

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Find 125 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTATGCTGTCAAGG+AGG	0.712359	8_1:+19708969	None:intergenic
AAAATTCAAAGAATTTCAAG+TGG	0.644675	8_1:-19710503	Msa1184130:CDS
AAAGTGAGGAGACTACGACT+TGG	0.649574	8_1:-19711402	Msa1184130:CDS
AACCATCTTCCACAATACCA+GGG	0.636516	8_1:+19710011	None:intergenic
AACGTGTCTCTCACATATGC+AGG	0.530851	8_1:+19710754	None:intergenic
AACTCCAAAACCCATAGATT+GGG	0.455626	8_1:+19711818	None:intergenic
AAGAGTTATGCCCAATCTAT+GGG	0.502102	8_1:-19711828	Msa1184130:CDS
AAGGAAAACAAGGCTGATTT+TGG	0.221363	8_1:-19710601	Msa1184130:CDS
AAGGGCGTCCTCCTTCAAAA+AGG	0.415773	8_1:-19709937	Msa1184130:CDS
AAGTATTGAATTTGGATTGA+AGG	0.452798	8_1:+19709528	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGTATCTTCTGATGAAG+AGG	-	chr8_1:19709228-19709247	Msa1184130:intron	30.0%
TTTAACAAAAACCCAGTGTA+AGG	-	chr8_1:19709513-19709532	Msa1184130:CDS	30.0%
GGTTATGAGAATATGACATT+TGG	-	chr8_1:19709745-19709764	Msa1184130:CDS	30.0%
TTACTTGGTTATTCCAAACA+TGG	-	chr8_1:19710109-19710128	Msa1184130:CDS	30.0%
TTTGTCTTGATCGGTAATTA+TGG	+	chr8_1:19710166-19710185	None:intergenic	30.0%
TTTCATGGATTTGTCTTGAT+CGG	+	chr8_1:19710175-19710194	None:intergenic	30.0%
ATCCATGAAAAATGCAATTG+CGG	-	chr8_1:19710185-19710204	Msa1184130:CDS	30.0%
TTTGAGTAAGAGTGATTTCA+TGG	-	chr8_1:19710335-19710354	Msa1184130:CDS	30.0%
CTGTTAACTTAAGAACACAA+AGG	+	chr8_1:19710920-19710939	None:intergenic	30.0%
CTTTGTGTTCTTAAGTTAAC+AGG	-	chr8_1:19710918-19710937	Msa1184130:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	19708983	19712237	19708983	ID=Msa1184130;Name=Msa1184130
chr8_1	mRNA	19708983	19712237	19708983	ID=Msa1184130-mRNA-1;Parent=Msa1184130;Name=Msa1184130-mRNA-1;_AED=0.23;_eAED=0.10;_QI=0\|0.83\|0.42\|1\|1\|1\|7\|0\|867
chr8_1	exon	19712216	19712237	19712216	ID=Msa1184130-mRNA-1:exon:7656;Parent=Msa1184130-mRNA-1
chr8_1	exon	19709850	19712002	19709850	ID=Msa1184130-mRNA-1:exon:7655;Parent=Msa1184130-mRNA-1
chr8_1	exon	19709707	19709778	19709707	ID=Msa1184130-mRNA-1:exon:7654;Parent=Msa1184130-mRNA-1
chr8_1	exon	19709510	19709605	19709510	ID=Msa1184130-mRNA-1:exon:7653;Parent=Msa1184130-mRNA-1
chr8_1	exon	19709371	19709427	19709371	ID=Msa1184130-mRNA-1:exon:7652;Parent=Msa1184130-mRNA-1
chr8_1	exon	19709240	19709282	19709240	ID=Msa1184130-mRNA-1:exon:7651;Parent=Msa1184130-mRNA-1
chr8_1	exon	19708983	19709143	19708983	ID=Msa1184130-mRNA-1:exon:7650;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19712216	19712237	19712216	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19709850	19712002	19709850	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19709707	19709778	19709707	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19709510	19709605	19709510	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19709371	19709427	19709371	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19709240	19709282	19709240	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1
chr8_1	CDS	19708983	19709143	19708983	ID=Msa1184130-mRNA-1:cds;Parent=Msa1184130-mRNA-1

Gene Sequence

>Msa1184130

ATGGAAACAGTGCAAAAATCAATGGAAGAAGTATTTGTATCTTCTGATGAAGAGGAAATCAGAGAGGGAAATAATAATTTTCATGATAGTTTAGAAGAAGATATTGTTCATGAAGATGAAAAACCTCAGGTTGGAACTATATTTAGCTCTAAAGATGAACTTTTTGAGTATTACAAGAGTTATGCCCAATCTATGGGTTTTGGAGTTACTAAACTTAGTAACAAAAATACAGATGATGGGAAAAAATACTTTACTCTAGCATGTAGTCGTGGATCAAAGTATGTGAGTAAGGCGAAGAAGCTTTTGAACCCAAATCCTTTAACAAAAACCCAGTGTAAGGCTAGATTGAATGCATGTATTTCTTTAGATGGAACAGTTACTATTACAAAACTTTTTCTTGAGCATAATCATGATCTAATCCCTGACAAAGCACGCTATTTTAGAAGTAGTAAGTTTTTGGATCCTCGTTTGAAAAGGAGGTTAGAACTCAATGATCAAGCTGGAATAAATGTAAGCAGAAATTTTCGATCAATGGTTGTTGAAGCAAATGGTTATGAGAATATGACATTTGGTGAAAAGGATTGCAGAAACTATATAGATAAAGTGAGGAGACTACGACTTGGGGCTGGAGATGCTGAGGCTATTCAAAATTATTTCGTTAAAATGCAAAAGCAAAATAGTCAGTTCTATTATGTAATAGACATTGATGATAAAAGTCGCTTACGAAATGTTTTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGAAGTCGTAACATTTGACACTACTTACTTAACAAATAAGTATGACATGCCTTTTGCCCCATTTGTTGGAGTAAACCATCATGGCCAATCTGTGTTGTTGGGCTGTGCTTTATTGTCGAAGGAGGATACTAAGTCCTTTACTTGGTTATTCCAAACATGGTTAGACTGCATGCATGGACGTGCTCCAAATGCCATAATTACCGATCAAGACAAATCCATGAAAAATGCAATTGCGGCTGTTTTCCCAAAAGCTCGTCATCGATGGTGTTTGTGGCATATAATGAAAAAGGTTCCAGAAAAGCTAAGTAGATACTCCGATTACGAGTCTATGAAAACACTTTTGCATGATGTTGTATATGATTCTTTGAGTAAGAGTGATTTCATGGAAAAGTGGGAAAGAATGATTGAAGATTTTGAACTTCATGATAATGAATGGTTGAAGGGGTTATTTGATGAAAGAAATCGTTGGGTTCCTGCATATGTGAGAGACACGTTTTGGGCGGGAATGTCAACGACTCAAAGAAGTGAAAGTATGAACTCGTTTTTTGATGGATATGTAAATTCAAAGACAGCATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAGAGATAAAGTTGAAAAGGAAAACAAGGCTGATTTTGGTTCATTTAATACAATGATAGCTTGTATAAGTCATTTTGGCTTTGAGTTGCAATTCCAGAAAGCATTCACCAATGCAAAATTCAAAGAATTTCAAGTGGAGGTTGCTTCTATGATTTACTGTCATACTTGCTTTGAGAGATTGGAAGGATCAAATTCTATATATTCTGTTATAGAGAGCAAGAAAAACTTTGACATAATTAAAGATATAGTGTTTGAGGTATCCTTCAATGAGAAAGACTTTGAGTTACGTTGTATGTGTTGTTTGTTTCAATTCAAAGGTATTTTATGTAGGCACATCCTTTGTGTTCTTAAGTTAACAGGAAAAACAGAGTCATTGCCATCCTCTTATATTTTCTCTCAGTGGAGGAAGGATATAAGACGAAGACATACCCTTGTTAAATGTGGTTTTGATCATTTAGTTGGAAATGCTAAATTGCAAAGAGTTGATAAAGCATGTGCTGACTTTTATGAAGTTGCTTCTGAGGTGATTAATACCGATGATGATTTGTTTAAAATGAGGAATTGGATCAAGGAAGTAAAAAATGAGTTTACCTCTAAAGAAGCATCCCCTGGTATTGTGGAAGATGGTTCAGTTCAAAATCAAGTGATTAAAATTCTTGACCCTACACCGACTCGAAGTAAAGGGCGTCCTCCTTCAAAAAGGAAGTCTTCTAAAGTTGATCAAATTGTGAAGAAAATTTCAAAAAAGAAGACCCAAAAAAGAAGTCAACAGAGTGTAAATCAACAAGAGGGCCTGTGTGCATCTAAAGTACAAGAGAGTGTTCAAGTAGTTGATGTAGTTGGCACACAAGAGAGTGTTCAAGGGGAACAAATTAGTTTTGGGAGGAATGGACATGGTGGTGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACTTATGAGTGAAGTAAATCAGGTTCCATTTTATTCTCAAGTCATGAATCATGGTGTTTCCTATTTTGAATTGTTACAGGCACAACACCATGTGAATGATCCGTCGTCGTCATCAATAACACGGCACTGCTGCTGCTGTCATGTGCTGGACTTTTGGTTTGGGCTTGTTGGCCTCCTTGGCAGCAAAGGTTTTAAGTCTGGGGGAACTGCTGCATCTGTCAAGTGCTTGACAAGTTTTGGTTTGGCCGTCATGTGCTTGGTCTGGGCTAGTTGGCCTCCTTGA

Protein sequence

>Msa1184130

METVQKSMEEVFVSSDEEEIREGNNNFHDSLEEDIVHEDEKPQVGTIFSSKDELFEYYKSYAQSMGFGVTKLSNKNTDDGKKYFTLACSRGSKYVSKAKKLLNPNPLTKTQCKARLNACISLDGTVTITKLFLEHNHDLIPDKARYFRSSKFLDPRLKRRLELNDQAGINVSRNFRSMVVEANGYENMTFGEKDCRNYIDKVRRLRLGAGDAEAIQNYFVKMQKQNSQFYYVIDIDDKSRLRNVFWADARCRAAYEYFGEVVTFDTTYLTNKYDMPFAPFVGVNHHGQSVLLGCALLSKEDTKSFTWLFQTWLDCMHGRAPNAIITDQDKSMKNAIAAVFPKARHRWCLWHIMKKVPEKLSRYSDYESMKTLLHDVVYDSLSKSDFMEKWERMIEDFELHDNEWLKGLFDERNRWVPAYVRDTFWAGMSTTQRSESMNSFFDGYVNSKTALKQFVEQYDNALRDKVEKENKADFGSFNTMIACISHFGFELQFQKAFTNAKFKEFQVEVASMIYCHTCFERLEGSNSIYSVIESKKNFDIIKDIVFEVSFNEKDFELRCMCCLFQFKGILCRHILCVLKLTGKTESLPSSYIFSQWRKDIRRRHTLVKCGFDHLVGNAKLQRVDKACADFYEVASEVINTDDDLFKMRNWIKEVKNEFTSKEASPGIVEDGSVQNQVIKILDPTPTRSKGRPPSKRKSSKVDQIVKKISKKKTQKRSQQSVNQQEGLCASKVQESVQVVDVVGTQESVQGEQISFGRNGHGGVNNLAPFNPNSILMSEVNQVPFYSQVMNHGVSYFELLQAQHHVNDPSSSSITRHCCCCHVLDFWFGLVGLLGSKGFKSGGTAASVKCLTSFGLAVMCLVWASWPP*