AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1185390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185390 MtrunA17_Chr8g0351051 94.583 240 4 1 1 231 12 251 2.35e-169 466
Msa1185390 MtrunA17_Chr7g0246401 70.370 135 30 3 101 231 1 129 5.55e-60 184
Msa1185390 MtrunA17_Chr3g0122251 45.122 246 107 8 1 230 12 245 3.81e-56 179
Msa1185390 MtrunA17_Chr6g0455511 44.898 245 115 8 1 231 12 250 2.38e-55 177
Msa1185390 MtrunA17_Chr7g0220111 43.673 245 117 8 1 231 12 249 1.18e-52 170
Msa1185390 MtrunA17_Chr5g0420091 58.282 163 56 3 1 152 12 173 1.28e-52 169
Msa1185390 MtrunA17_Chr1g0204111 41.284 218 99 3 2 209 29 227 2.41e-47 157
Msa1185390 MtrunA17_Chr4g0061671 53.086 162 64 4 1 152 12 171 7.64e-46 150
Msa1185390 MtrunA17_Chr4g0061691 52.229 157 65 2 1 147 12 168 4.20e-44 147
Msa1185390 MtrunA17_Chr6g0474371 52.532 158 64 3 1 147 12 169 9.05e-44 145
Msa1185390 MtrunA17_Chr2g0284911 46.250 160 77 1 1 151 27 186 3.52e-43 146
Msa1185390 MtrunA17_Chr4g0057151 52.564 156 65 3 1 147 12 167 3.17e-42 142
Msa1185390 MtrunA17_Chr3g0097101 48.125 160 74 1 1 151 27 186 3.31e-42 143
Msa1185390 MtrunA17_Chr8g0380021 41.667 192 96 3 1 182 28 213 1.59e-41 141
Msa1185390 MtrunA17_Chr8g0366231 42.584 209 102 6 1 195 12 216 3.97e-41 140
Msa1185390 MtrunA17_Chr8g0351031 47.771 157 72 3 1 147 12 168 6.71e-40 137
Msa1185390 MtrunA17_Chr7g0246431 48.718 156 71 2 1 147 12 167 2.25e-39 135
Msa1185390 MtrunA17_Chr3g0077501 41.176 187 91 2 1 168 12 198 1.46e-38 133
Msa1185390 MtrunA17_Chr8g0351041 46.667 150 70 3 1 140 12 161 1.00e-37 129
Msa1185390 MtrunA17_Chr5g0420081 41.791 201 104 5 1 189 12 211 1.03e-37 131
Msa1185390 MtrunA17_Chr2g0279821 37.168 226 120 6 1 213 12 228 3.77e-36 127
Msa1185390 MtrunA17_Chr7g0220121 45.963 161 67 4 1 147 12 166 3.49e-34 123
Msa1185390 MtrunA17_Chr1g0164791 36.161 224 110 6 1 206 12 220 5.77e-34 121
Msa1185390 MtrunA17_Chr4g0020221 43.713 167 75 3 1 152 12 174 1.23e-30 114
Msa1185390 MtrunA17_Chr5g0411691 41.892 148 69 3 1 136 12 154 1.42e-30 113
Msa1185390 MtrunA17_Chr4g0049541 43.243 148 68 3 1 136 12 155 1.24e-29 110
Msa1185390 MtrunA17_Chr5g0412271 41.358 162 86 3 1 153 12 173 8.24e-29 108
Msa1185390 MtrunA17_Chr5g0412461 40.000 180 98 3 1 171 12 190 1.73e-28 107
Msa1185390 MtrunA17_Chr4g0018421 42.767 159 80 4 1 148 12 170 3.94e-28 105
Msa1185390 MtrunA17_Chr5g0427401 38.503 187 97 5 1 179 12 188 1.46e-27 105
Msa1185390 MtrunA17_Chr3g0125241 41.985 131 70 2 1 125 37 167 1.80e-26 101
Msa1185390 MtrunA17_Chr8g0377551 34.043 188 103 5 53 230 3 179 7.64e-26 99.4
Msa1185390 MtrunA17_Chr4g0049901 35.789 190 107 5 1 179 38 223 3.38e-25 99.0
Msa1185390 MtrunA17_Chr3g0142191 33.937 221 119 7 1 198 12 228 1.10e-24 97.4
Msa1185390 MtrunA17_Chr8g0377561 95.652 46 2 0 1 46 12 57 3.20e-24 92.4
Msa1185390 MtrunA17_Chr7g0246381 93.750 48 3 0 1 48 12 59 9.68e-24 90.5
Msa1185390 MtrunA17_Chr5g0404951 36.842 171 80 6 1 152 12 173 4.30e-23 93.2
Msa1185390 MtrunA17_Chr2g0308251 83.333 48 8 0 1 48 12 59 3.13e-22 87.0
Msa1185390 MtrunA17_Chr1g0159661 35.862 145 85 3 1 137 12 156 1.46e-21 88.2
Msa1185390 MtrunA17_Chr1g0173161 83.333 48 8 0 1 48 12 59 1.42e-19 80.1
Msa1185390 MtrunA17_Chr1g0166611 79.545 44 9 0 5 48 20 63 2.85e-18 78.2
Msa1185390 MtrunA17_Chr5g0427921 70.833 48 14 0 1 48 12 59 7.49e-17 72.0
Msa1185390 MtrunA17_Chr4g0044071 65.957 47 16 0 1 47 12 58 5.12e-16 71.6
Msa1185390 MtrunA17_Chr3g0134451 62.712 59 21 1 1 58 12 70 6.36e-16 75.5
Msa1185390 MtrunA17_Chr2g0292791 35.526 152 83 4 2 142 20 167 1.38e-15 73.2
Msa1185390 MtrunA17_Chr5g0425191 68.085 47 15 0 1 47 12 58 1.53e-15 70.1
Msa1185390 MtrunA17_Chr1g0208581 34.437 151 72 5 2 135 20 160 5.37e-15 71.6
Msa1185390 MtrunA17_Chr1g0208561 50.000 68 32 1 2 69 20 85 1.05e-14 70.9
Msa1185390 MtrunA17_Chr3g0089141 50.000 68 32 1 2 69 20 85 1.26e-14 70.5
Msa1185390 MtrunA17_Chr2g0325971 33.775 151 73 6 2 135 20 160 1.98e-14 70.1
Msa1185390 MtrunA17_Chr5g0419601 54.412 68 29 1 2 69 20 85 3.16e-14 69.7
Msa1185390 MtrunA17_Chr5g0422941 36.800 125 59 3 2 126 20 124 3.29e-14 69.7
Msa1185390 MtrunA17_Chr4g0018951 57.407 54 23 0 5 58 26 79 4.24e-14 67.8
Msa1185390 MtrunA17_Chr2g0317481 30.769 208 123 6 2 199 20 216 4.27e-14 69.3
Msa1185390 MtrunA17_Chr2g0317451 30.769 208 123 6 2 199 20 216 4.86e-14 68.9
Msa1185390 MtrunA17_Chr3g0099411 54.386 57 26 0 2 58 20 76 7.45e-14 68.2
Msa1185390 MtrunA17_Chr8g0376821 56.604 53 23 0 6 58 17 69 7.48e-14 67.4
Msa1185390 MtrunA17_Chr1g0175611 32.335 167 96 4 6 172 17 166 1.11e-13 66.6
Msa1185390 MtrunA17_Chr1g0206721 54.386 57 26 0 2 58 20 76 1.24e-13 67.8
Msa1185390 MtrunA17_Chr1g0206701 54.386 57 26 0 2 58 20 76 1.35e-13 67.8
Msa1185390 MtrunA17_Chr1g0169761 56.604 53 23 0 6 58 17 69 1.39e-13 66.6
Msa1185390 MtrunA17_Chr8g0355091 34.211 152 85 4 2 142 20 167 1.42e-13 67.8
Msa1185390 MtrunA17_Chr3g0099421 56.140 57 25 0 2 58 45 101 1.67e-13 67.8
Msa1185390 MtrunA17_Chr8g0379021 51.724 58 28 0 1 58 22 79 2.29e-13 66.2
Msa1185390 MtrunA17_Chr1g0187361 54.386 57 26 0 2 58 20 76 2.61e-13 67.0
Msa1185390 MtrunA17_Chr1g0149391 56.140 57 25 0 2 58 20 76 3.22e-13 66.6
Msa1185390 MtrunA17_Chr2g0308271 37.037 108 59 1 53 151 36 143 3.44e-13 66.2
Msa1185390 MtrunA17_Chr1g0188671 33.058 121 71 1 2 122 58 168 5.00e-13 66.6
Msa1185390 MtrunA17_Chr1g0206691 52.632 57 27 0 2 58 3 59 6.53e-13 65.5
Msa1185390 MtrunA17_Chr4g0074101 52.830 53 25 0 6 58 17 69 8.42e-13 65.1
Msa1185390 MtrunA17_Chr1g0187351 50.000 66 32 1 2 67 3 67 8.51e-13 61.6
Msa1185390 MtrunA17_Chr3g0119901 47.222 72 34 2 3 72 21 90 1.13e-12 64.7
Msa1185390 MtrunA17_Chr5g0422421 51.471 68 32 1 2 69 20 86 1.46e-12 65.1
Msa1185390 MtrunA17_Chr1g0206991 50.877 57 28 0 2 58 20 76 2.07e-12 63.5
Msa1185390 MtrunA17_Chr8g0357771 58.696 46 19 0 2 47 13 58 2.44e-12 63.5
Msa1185390 MtrunA17_Chr1g0180591 52.830 53 25 0 6 58 17 69 3.30e-12 62.8
Msa1185390 MtrunA17_Chr2g0333981 51.724 58 28 0 1 58 22 79 5.74e-12 62.4
Msa1185390 MtrunA17_Chr1g0175601 54.717 53 24 0 6 58 17 69 7.01e-12 62.0
Msa1185390 MtrunA17_Chr4g0052061 33.108 148 77 4 1 147 12 138 7.92e-12 61.6
Msa1185390 MtrunA17_Chr2g0300441 50.877 57 28 0 2 58 20 76 8.69e-12 62.8
Msa1185390 MtrunA17_Chr3g0085241 44.444 72 36 2 3 72 53 122 1.02e-11 62.8
Msa1185390 MtrunA17_Chr4g0071601 52.830 53 25 0 6 58 27 79 1.63e-11 61.2
Msa1185390 MtrunA17_Chr2g0300421 32.836 134 80 3 5 138 23 146 3.33e-11 60.1
Msa1185390 MtrunA17_Chr3g0111841 49.231 65 32 1 2 66 7 70 5.19e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185390 AT2G45650.1 62.295 244 76 6 1 231 12 252 1.29e-96 282
Msa1185390 AT3G61120.1 52.697 241 92 7 1 227 12 244 1.71e-70 216
Msa1185390 AT3G02310.1 44.628 242 120 4 1 231 12 250 1.60e-58 186
Msa1185390 AT5G15800.1 43.154 241 126 3 1 231 12 251 2.90e-55 177
Msa1185390 AT5G15800.2 46.919 211 101 3 1 201 12 221 2.21e-53 172
Msa1185390 AT1G24260.2 44.534 247 106 8 1 230 12 244 6.31e-53 171
Msa1185390 AT1G24260.1 45.082 244 108 8 1 230 12 243 7.46e-52 168
Msa1185390 AT3G02310.2 56.250 160 60 2 1 150 12 171 9.63e-51 164
Msa1185390 AT2G03710.1 39.608 255 122 8 1 231 12 258 3.69e-49 162
Msa1185390 AT2G03710.2 40.000 255 120 9 1 231 12 257 2.40e-48 160
Msa1185390 AT1G24260.3 42.915 247 96 10 1 230 12 230 1.26e-46 154
Msa1185390 AT2G03710.3 49.383 162 70 3 1 151 12 172 2.33e-44 147
Msa1185390 AT3G58780.5 47.399 173 81 2 1 163 33 205 2.72e-44 149
Msa1185390 AT3G58780.1 47.399 173 81 2 1 163 27 199 2.90e-44 149
Msa1185390 AT2G42830.1 48.750 160 73 1 1 151 27 186 8.34e-44 147
Msa1185390 AT1G26310.1 43.056 216 104 6 1 201 12 223 3.01e-42 144
Msa1185390 AT2G42830.2 48.148 162 73 2 1 151 27 188 6.87e-42 143
Msa1185390 AT4G18960.1 39.655 232 110 6 1 220 28 241 2.21e-41 142
Msa1185390 AT1G69120.2 42.466 219 109 6 1 205 12 227 3.72e-41 140
Msa1185390 AT5G60910.1 48.148 162 74 2 1 152 12 173 1.67e-40 139
Msa1185390 AT4G22950.2 49.068 161 72 2 1 152 12 171 2.94e-40 136
Msa1185390 AT1G69120.1 50.633 158 66 4 1 147 12 168 2.96e-40 139
Msa1185390 AT3G58780.2 45.665 173 77 3 1 163 27 192 3.24e-40 138
Msa1185390 AT4G22950.3 49.390 164 73 2 1 155 12 174 6.59e-40 137
Msa1185390 AT4G22950.1 49.390 164 73 2 1 155 12 174 6.59e-40 137
Msa1185390 AT2G45660.1 48.077 156 72 3 1 147 12 167 1.29e-39 136
Msa1185390 AT5G62165.3 46.541 159 76 1 1 150 12 170 2.50e-39 135
Msa1185390 AT5G62165.1 46.541 159 76 1 1 150 12 170 2.50e-39 135
Msa1185390 AT5G62165.2 46.541 159 76 1 1 150 12 170 2.50e-39 135
Msa1185390 AT3G58780.3 41.919 198 80 3 1 163 27 224 6.67e-39 136
Msa1185390 AT4G09960.5 41.146 192 92 3 1 171 22 213 7.58e-39 135
Msa1185390 AT4G09960.6 41.146 192 92 3 1 171 13 204 7.82e-39 134
Msa1185390 AT4G09960.1 41.146 192 92 3 1 171 12 203 9.15e-39 134
Msa1185390 AT5G62165.17 48.252 143 65 1 1 134 12 154 1.01e-38 132
Msa1185390 AT5G62165.12 48.252 143 65 1 1 134 12 154 1.01e-38 132
Msa1185390 AT5G62165.11 48.252 143 65 1 1 134 12 154 1.01e-38 132
Msa1185390 AT4G09960.3 41.146 192 92 3 1 171 38 229 3.06e-38 134
Msa1185390 AT2G45660.2 48.966 145 65 3 1 136 12 156 3.31e-38 130
Msa1185390 AT3G58780.4 39.806 206 81 3 1 163 27 232 1.04e-37 133
Msa1185390 AT5G62165.6 47.407 135 62 1 1 126 12 146 7.13e-36 124
Msa1185390 AT5G62165.9 47.407 135 62 1 1 126 12 146 7.13e-36 124
Msa1185390 AT5G62165.7 47.407 135 62 1 1 126 12 146 7.13e-36 124
Msa1185390 AT5G62165.8 47.407 135 62 1 1 126 12 146 7.13e-36 124
Msa1185390 AT5G62165.13 47.407 135 62 1 1 126 12 146 7.13e-36 124
Msa1185390 AT5G13790.2 49.673 153 72 3 1 148 12 164 3.06e-35 126
Msa1185390 AT4G11880.2 48.966 145 65 4 1 136 12 156 8.21e-35 122
Msa1185390 AT4G11880.3 48.966 145 65 4 1 136 12 156 8.21e-35 122
Msa1185390 AT4G09960.4 40.306 196 92 4 1 171 107 302 1.76e-34 125
Msa1185390 AT5G62165.10 46.377 138 65 1 1 129 12 149 2.87e-34 122
Msa1185390 AT5G62165.4 46.377 138 65 1 1 129 12 149 2.87e-34 122
Msa1185390 AT5G13790.1 49.351 154 68 4 1 148 12 161 5.05e-34 123
Msa1185390 AT4G09960.2 46.565 131 61 1 1 122 12 142 1.89e-33 120
Msa1185390 AT4G24540.1 41.176 204 107 5 1 192 12 214 4.12e-33 119
Msa1185390 AT2G14210.1 35.345 232 121 6 1 219 12 227 5.42e-33 119
Msa1185390 AT2G14210.2 35.345 232 121 6 1 219 12 227 5.56e-33 119
Msa1185390 AT4G11880.4 49.068 161 73 4 1 152 12 172 1.26e-32 118
Msa1185390 AT4G11880.1 49.068 161 73 4 1 152 12 172 1.26e-32 118
Msa1185390 AT3G57230.1 44.056 143 70 2 2 135 13 154 4.27e-32 117
Msa1185390 AT3G57230.4 44.056 143 70 2 2 135 13 154 4.27e-32 117
Msa1185390 AT3G30260.1 46.809 141 63 4 1 130 12 151 5.51e-32 117
Msa1185390 AT3G57230.2 44.776 134 64 2 2 126 13 145 4.96e-30 109
Msa1185390 AT2G22540.3 45.223 157 77 2 1 148 12 168 6.30e-30 112
Msa1185390 AT2G22540.1 45.223 157 77 2 1 148 12 168 6.30e-30 112
Msa1185390 AT4G37940.1 41.379 145 75 2 1 136 12 155 1.91e-29 110
Msa1185390 AT5G51860.2 40.491 163 83 4 1 151 12 172 2.67e-29 109
Msa1185390 AT2G22630.1 44.138 145 72 3 1 136 12 156 2.92e-29 109
Msa1185390 AT2G22630.2 44.138 145 72 3 1 136 12 156 2.92e-29 109
Msa1185390 AT5G51870.1 34.158 202 110 4 1 192 12 200 4.26e-29 108
Msa1185390 AT5G51860.1 40.741 162 82 4 1 150 12 171 4.95e-29 108
Msa1185390 AT3G57390.3 40.223 179 89 3 1 161 12 190 1.53e-28 107
Msa1185390 AT5G51870.4 39.490 157 85 2 1 147 12 168 2.17e-28 107
Msa1185390 AT5G51870.3 39.490 157 85 2 1 147 22 178 2.20e-28 107
Msa1185390 AT3G57390.1 40.223 179 89 3 1 161 12 190 2.77e-28 107
Msa1185390 AT5G10140.4 42.466 146 79 3 1 141 12 157 1.41e-27 104
Msa1185390 AT4G37940.4 42.568 148 74 3 1 138 12 158 6.39e-27 103
Msa1185390 AT2G22540.2 43.949 157 74 3 1 148 12 163 8.61e-27 103
Msa1185390 AT4G37940.3 43.511 131 64 2 1 122 12 141 9.84e-27 101
Msa1185390 AT5G62165.14 60.241 83 29 1 1 83 12 90 9.88e-27 99.8
Msa1185390 AT5G10140.2 42.857 133 74 2 1 131 12 144 2.64e-26 100
Msa1185390 AT5G10140.1 42.857 133 74 2 1 131 12 144 3.36e-26 100
Msa1185390 AT5G10140.3 42.857 133 74 2 1 131 12 144 5.64e-26 100
Msa1185390 AT3G54340.1 37.647 170 76 3 1 152 12 169 1.48e-25 100
Msa1185390 AT5G51870.2 41.176 136 70 3 1 126 12 147 3.82e-25 97.4
Msa1185390 AT5G23260.2 38.608 158 83 3 1 147 12 166 4.73e-25 99.4
Msa1185390 AT5G23260.4 38.608 158 83 3 1 147 28 182 7.96e-25 99.0
Msa1185390 AT5G51870.5 41.176 136 70 3 1 126 35 170 1.00e-24 97.1
Msa1185390 AT1G71692.1 36.634 202 103 7 1 185 12 205 1.22e-23 94.7
Msa1185390 AT5G20240.1 35.443 158 92 3 1 152 12 165 3.38e-23 93.6
Msa1185390 AT5G23260.1 37.975 158 79 4 1 147 28 177 1.36e-21 90.5
Msa1185390 AT5G20240.2 38.931 131 74 2 1 125 12 142 2.20e-21 87.0
Msa1185390 AT5G23260.3 38.849 139 71 3 1 128 12 147 2.59e-21 89.0
Msa1185390 AT1G31140.1 42.647 136 68 4 1 126 12 147 3.35e-21 88.2
Msa1185390 AT5G65070.1 34.574 188 114 5 1 183 12 195 3.63e-21 87.8
Msa1185390 AT1G31140.2 41.304 138 69 3 1 126 12 149 5.70e-21 87.8
Msa1185390 AT5G65050.2 36.184 152 89 4 1 147 12 160 9.34e-21 86.3
Msa1185390 AT5G65050.3 36.184 152 89 4 1 147 12 160 3.03e-20 85.5
Msa1185390 AT5G65060.3 34.211 152 92 3 1 147 12 160 6.75e-20 84.3
Msa1185390 AT5G65060.1 34.211 152 92 3 1 147 12 160 1.15e-19 84.0
Msa1185390 AT5G65050.1 36.429 140 81 4 1 135 12 148 2.61e-19 82.4
Msa1185390 AT5G65050.5 38.514 148 80 5 1 147 12 149 3.33e-19 82.4
Msa1185390 AT5G65080.3 37.419 155 80 6 1 147 19 164 4.20e-19 82.0
Msa1185390 AT5G65070.2 31.019 216 115 5 1 183 12 226 2.15e-18 81.3
Msa1185390 AT5G65060.2 36.913 149 81 5 1 147 12 149 4.46e-18 79.3
Msa1185390 AT5G65070.4 38.636 132 73 4 1 127 12 140 6.28e-18 77.8
Msa1185390 AT5G65080.2 37.681 138 77 3 1 133 19 152 7.42e-18 79.3
Msa1185390 AT1G77080.11 38.462 156 80 4 1 147 12 160 1.11e-17 78.2
Msa1185390 AT5G65070.5 34.783 161 72 4 1 128 12 172 1.92e-17 78.2
Msa1185390 AT1G77080.4 38.462 156 80 4 1 147 12 160 3.00e-17 77.4
Msa1185390 AT1G77080.5 38.462 156 80 4 1 147 12 160 3.55e-17 76.6
Msa1185390 AT1G77080.2 35.570 149 90 2 1 147 12 156 8.12e-17 76.3
Msa1185390 AT5G65070.3 30.769 221 110 7 1 183 12 227 3.74e-16 75.1
Msa1185390 AT1G22130.1 54.412 68 29 1 1 68 12 77 1.38e-15 75.1
Msa1185390 AT1G77080.12 35.507 138 83 2 1 136 12 145 1.79e-15 71.2
Msa1185390 AT1G77980.1 56.667 60 24 1 1 60 12 69 8.86e-15 72.8
Msa1185390 AT1G77080.8 31.868 182 83 3 1 147 12 187 1.59e-14 70.5
Msa1185390 AT1G01530.1 55.357 56 25 0 2 57 18 73 9.04e-14 68.9
Msa1185390 AT4G36590.1 47.887 71 37 0 1 71 17 87 9.97e-13 65.9
Msa1185390 AT5G60440.1 51.724 58 28 0 1 58 17 74 1.10e-12 66.2
Msa1185390 AT2G34440.1 50.909 55 27 0 6 60 17 71 1.40e-12 64.3
Msa1185390 AT1G65360.1 47.368 57 30 0 5 61 21 77 1.44e-12 65.1
Msa1185390 AT1G69120.3 40.952 105 51 3 53 147 3 106 1.48e-12 64.7
Msa1185390 AT1G72350.1 56.364 55 22 1 6 60 58 110 2.14e-12 64.7
Msa1185390 AT1G77950.3 33.735 166 96 6 1 164 12 165 2.88e-12 64.7
Msa1185390 AT1G77950.2 33.735 166 96 6 1 164 12 165 2.88e-12 64.7
Msa1185390 AT1G77950.1 33.735 166 96 6 1 164 12 165 2.88e-12 64.7
Msa1185390 AT1G77950.4 33.735 166 96 6 1 164 12 165 2.88e-12 64.7
Msa1185390 AT2G24840.1 51.852 54 26 0 5 58 77 130 6.57e-12 63.9
Msa1185390 AT5G60910.2 34.862 109 62 1 53 152 3 111 8.84e-12 62.0
Msa1185390 AT4G37435.1 65.854 41 14 0 6 46 17 57 2.23e-11 61.2
Msa1185390 AT3G66656.1 41.892 74 40 1 6 79 17 87 3.87e-11 60.5
Msa1185390 AT4G18960.3 28.889 180 98 6 53 220 66 227 5.11e-11 60.8
Msa1185390 AT4G18960.2 28.889 180 98 6 53 220 66 227 5.11e-11 60.8

Find 52 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGCAGACACAAATTA+TGG 0.257056 8_1:+22535404 Msa1185390:intron
CATGTACCCTATTTGCAAAA+AGG 0.269693 8_1:-22535938 None:intergenic
ACAAATTATGGTTGAACAAT+TGG 0.292155 8_1:+22535416 Msa1185390:CDS
GAACAAGCAACTAAGGATTA+AGG 0.318226 8_1:+22535664 Msa1185390:CDS
CGTGGCAAACTCTATGAATT+TGG 0.319871 8_1:+22531733 Msa1185390:CDS
CTCTATGAATTTGGAAGTGT+TGG 0.323540 8_1:+22531742 Msa1185390:CDS
GTCATTTCAGGCAGTTGCTT+GGG 0.333279 8_1:+22535076 Msa1185390:intron
ATATCCATACTCATATTCAT+AGG 0.359722 8_1:-22535904 None:intergenic
TGGAGCTCTAATTCAGTTGC+TGG 0.365559 8_1:+22535844 Msa1185390:CDS
CAACCCTATGAATATGAGTA+TGG 0.368330 8_1:+22535900 Msa1185390:CDS
TTGGTATCGTTCAATGGTTT+TGG 0.371876 8_1:-22533742 None:intergenic
TCTTGGACCTTTGAACATAA+AGG 0.389505 8_1:+22535104 Msa1185390:CDS
CAGTTGCTTGGGGAAGATCT+TGG 0.428496 8_1:+22535087 Msa1185390:CDS
AGGAGAGGGATTTAATCTTA+AGG 0.448952 8_1:+22535807 Msa1185390:CDS
TTAAGGCAATGGAAAGTTTG+TGG 0.456921 8_1:+22535824 Msa1185390:CDS
TGCAACTCCTTTATGTTCAA+AGG 0.461252 8_1:-22535111 None:intergenic
GAGACTTGAACAAGCAACTA+AGG 0.468260 8_1:+22535657 Msa1185390:CDS
ATGCTCTTGGAAACATTAGA+TGG 0.468413 8_1:-22536231 None:intergenic
GCACCGTTGGTATCGTTCAA+TGG 0.471712 8_1:-22533748 None:intergenic
CCTTCAGCTTAGAAACCTCT+TGG 0.471990 8_1:-22534541 None:intergenic
CCTGTGTGTCACAATCAATT+TGG 0.486260 8_1:-22533797 None:intergenic
CATACTCATATTCATAGGGT+TGG 0.487085 8_1:-22535899 None:intergenic
GGGATTTAATCTTAAGGCAA+TGG 0.487191 8_1:+22535813 Msa1185390:CDS
AATTGGAAGAGCTTCGCAAA+AGG 0.487962 8_1:+22535433 Msa1185390:CDS
ATGGCTCAGCTTGAACATAC+TGG 0.488446 8_1:-22536212 None:intergenic
GAATAGAGAACAAAATAAAC+CGG 0.490867 8_1:+22531611 None:intergenic
TGTCATTTCAGGCAGTTGCT+TGG 0.500941 8_1:+22535075 Msa1185390:intron
AGTCTCACAAGCCATGCTCT+TGG 0.503465 8_1:-22536244 None:intergenic
CACGGCTAGAGAAAATGATA+AGG 0.506200 8_1:-22531714 None:intergenic
TCTATGAATTTGGAAGTGTT+GGG 0.506329 8_1:+22531743 Msa1185390:CDS
ATATTCATAGGGTTGGTTTG+AGG 0.512979 8_1:-22535892 None:intergenic
TTGTGAGACTAACTTCATGC+AGG 0.528929 8_1:+22536257 Msa1185390:CDS
ATTGGAAGAGCTTCGCAAAA+GGG 0.532341 8_1:+22535434 Msa1185390:CDS
ATCTAATGTTTCCAAGAGCA+TGG 0.544048 8_1:+22536233 Msa1185390:CDS
ACGGCTAGAGAAAATGATAA+GGG 0.547854 8_1:-22531713 None:intergenic
AGCACAAGCTAGGCAAAGAA+AGG 0.555280 8_1:+22535164 Msa1185390:CDS
AGAGAACAAAATAAACCGGC+AGG 0.560471 8_1:+22531615 None:intergenic
TATCCATACTCATATTCATA+GGG 0.561894 8_1:-22535903 None:intergenic
GAGGATTAAATGAGCACCGT+TGG 0.567469 8_1:-22533761 None:intergenic
CTTGAACATACTGGTACTGT+TGG 0.571481 8_1:-22536203 None:intergenic
CCAAGAGGTTTCTAAGCTGA+AGG 0.572937 8_1:+22534541 Msa1185390:CDS
TCATTTCAGGCAGTTGCTTG+GGG 0.587356 8_1:+22535077 Msa1185390:intron
AAGGTGCATTAGCACAAGCT+AGG 0.590577 8_1:+22535154 Msa1185390:CDS
GTTGGTTTGAGGTGTCTGAA+AGG 0.598161 8_1:-22535881 None:intergenic
ATTTGGTGGTCATCTTGCTG+AGG 0.603360 8_1:-22533780 None:intergenic
AGACTAACTTCATGCAGGGA+TGG 0.615060 8_1:+22536262 Msa1185390:CDS
CAAGCAGAGTTGGTACCAAG+AGG 0.621451 8_1:+22534526 Msa1185390:intron
CAAATTCATAGAGTTTGCCA+CGG 0.640343 8_1:-22531732 None:intergenic
GTGTGTCACAATCAATTTGG+TGG 0.647829 8_1:-22533794 None:intergenic
TGTGAGACTAACTTCATGCA+GGG 0.652522 8_1:+22536258 Msa1185390:CDS
CCAAATTGATTGTGACACAC+AGG 0.672500 8_1:+22533797 Msa1185390:CDS
AAACCATTGAACGATACCAA+CGG 0.680528 8_1:+22533745 Msa1185390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTTCAAAAAATTAATAAA+TGG - chr8_1:22531806-22531825 None:intergenic 10.0%
!!! TTTTTATTAATTGTAGTTTT+AGG + chr8_1:22532219-22532238 Msa1185390:intron 10.0%
!!! TTTTATTAATTGTAGTTTTA+GGG + chr8_1:22532220-22532239 Msa1185390:intron 10.0%
!!! AATTATTTAAAACATGATTT+TGG - chr8_1:22532661-22532680 None:intergenic 10.0%
!!! AGTTCATAATTTTATTTTAT+AGG + chr8_1:22534456-22534475 Msa1185390:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr8_1:22534775-22534794 Msa1185390:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr8_1:22534776-22534795 Msa1185390:intron 10.0%
!! TAACTATTAAAAATTGAATT+AGG + chr8_1:22535272-22535291 Msa1185390:intron 10.0%
!!! TTAACTAATAAATTTTTACT+TGG - chr8_1:22535544-22535563 None:intergenic 10.0%
!!! TTTCTTATAGTTTTGTATTT+TGG + chr8_1:22531889-22531908 Msa1185390:intron 15.0%
!!! TTCTTATAGTTTTGTATTTT+GGG + chr8_1:22531890-22531909 Msa1185390:intron 15.0%
!! AAAAAATTATTAATGTGTCA+TGG - chr8_1:22532203-22532222 None:intergenic 15.0%
!! GAATATATATGAATATTATG+AGG + chr8_1:22532291-22532310 Msa1185390:intron 15.0%
!! AAAGATAATGTAATGTTTAA+AGG + chr8_1:22532408-22532427 Msa1185390:intron 15.0%
!!! ATCATGTTTTAAATAATTGA+AGG + chr8_1:22532663-22532682 Msa1185390:intron 15.0%
!! AAAAGATTAAACGTTTAAAA+GGG - chr8_1:22532755-22532774 None:intergenic 15.0%
!!! TTATTAGAGTATTTTTTTAG+TGG - chr8_1:22532798-22532817 None:intergenic 15.0%
!! TAAAAGAAATATTCTTTCAT+AGG - chr8_1:22533423-22533442 None:intergenic 15.0%
!! TATGTACATTCTTAATTTAT+AGG + chr8_1:22533585-22533604 Msa1185390:intron 15.0%
!!! TGAGAAAAAAAATTTAGTTT+GGG - chr8_1:22533662-22533681 None:intergenic 15.0%
!! AAAAAAAACTTGAGAAATTT+GGG - chr8_1:22534177-22534196 None:intergenic 15.0%
!! AAAAAAAAACTTGAGAAATT+TGG - chr8_1:22534178-22534197 None:intergenic 15.0%
!!! AAGTTTTTTTTTTTCGTTTT+AGG + chr8_1:22534186-22534205 Msa1185390:intron 15.0%
!!! TTTTTTTTTTTGTCATCTAA+TGG - chr8_1:22534222-22534241 None:intergenic 15.0%
!!! TTGTACATTATTTTTGTTTT+AGG + chr8_1:22534291-22534310 Msa1185390:intron 15.0%
!!! TGTACATTATTTTTGTTTTA+GGG + chr8_1:22534292-22534311 Msa1185390:intron 15.0%
!!! CAATTTATATAATTCTGTTT+TGG + chr8_1:22534503-22534522 Msa1185390:intron 15.0%
!! AGTTCTATATTTATGTAAAA+GGG - chr8_1:22534621-22534640 None:intergenic 15.0%
!! AAGTTCTATATTTATGTAAA+AGG - chr8_1:22534622-22534641 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr8_1:22534777-22534796 Msa1185390:intron 15.0%
!! AGTATTAATTAGAGTTATAA+AGG + chr8_1:22534835-22534854 Msa1185390:intron 15.0%
!! GTATTAATTAGAGTTATAAA+GGG + chr8_1:22534836-22534855 Msa1185390:intron 15.0%
!! TATTAATTAGAGTTATAAAG+GGG + chr8_1:22534837-22534856 Msa1185390:intron 15.0%
!!! GTCTTTTATATACATATATA+TGG + chr8_1:22535220-22535239 Msa1185390:intron 15.0%
!! TATTAAAATAAAGTTCAATG+TGG + chr8_1:22535324-22535343 Msa1185390:intron 15.0%
!! GATTAAGGTTAAATATATAA+AGG + chr8_1:22535679-22535698 Msa1185390:intron 15.0%
!! AGATAATTAATAGAGAAATT+AGG - chr8_1:22535761-22535780 None:intergenic 15.0%
!!! TAAAAAAATCCAATTAGTTT+TGG + chr8_1:22536119-22536138 Msa1185390:intron 15.0%
!!! AAAAAAATCCAATTAGTTTT+GGG + chr8_1:22536120-22536139 Msa1185390:intron 15.0%
!!! TTTTATTGTCTATTTTTGTG+AGG + chr8_1:22531831-22531850 Msa1185390:intron 20.0%
!!! TTAGGGTTCTAATTTTTTTT+AGG + chr8_1:22532237-22532256 Msa1185390:intron 20.0%
!!! TAGGGTTCTAATTTTTTTTA+GGG + chr8_1:22532238-22532257 Msa1185390:intron 20.0%
!! TATATGAATATTATGAGGTT+TGG + chr8_1:22532296-22532315 Msa1185390:intron 20.0%
!! TAAACATTACATTATCTTTC+AGG - chr8_1:22532407-22532426 None:intergenic 20.0%
!! AGAAAAAAGAAAAACAGAAA+AGG + chr8_1:22532493-22532512 Msa1185390:intron 20.0%
!! TTAATTCTCACAACAAAATA+TGG + chr8_1:22532706-22532725 Msa1185390:intron 20.0%
!! CAAAAGATTAAACGTTTAAA+AGG - chr8_1:22532756-22532775 None:intergenic 20.0%
!!! CTTTTAAACGTTTAATCTTT+TGG + chr8_1:22532754-22532773 Msa1185390:intron 20.0%
!!! AATGGAAATTAGTCTTAAAT+TGG - chr8_1:22533126-22533145 None:intergenic 20.0%
!! ACTAATTTCCATTCAAAAAA+AGG + chr8_1:22533133-22533152 Msa1185390:intron 20.0%
!!! ATACTTTTCCTTTTTTTGAA+TGG - chr8_1:22533144-22533163 None:intergenic 20.0%
!! TAGGAAAATTCAAATATTTC+TGG - chr8_1:22533551-22533570 None:intergenic 20.0%
!! ACATAATAAAAGAACAAACT+AGG - chr8_1:22533570-22533589 None:intergenic 20.0%
!! GTGAGAAAAAAAATTTAGTT+TGG - chr8_1:22533663-22533682 None:intergenic 20.0%
!!! CTCACTAATACTTTTTTTAA+TGG + chr8_1:22533678-22533697 Msa1185390:intron 20.0%
!! TGATTGTTAATTTAGTAAGA+TGG - chr8_1:22533998-22534017 None:intergenic 20.0%
!!! TGTAAAGTATTTTCGTTTTA+GGG - chr8_1:22534119-22534138 None:intergenic 20.0%
!!! TTGTAAAGTATTTTCGTTTT+AGG - chr8_1:22534120-22534139 None:intergenic 20.0%
!! AAATAATACTCATAGTATGT+GGG - chr8_1:22534145-22534164 None:intergenic 20.0%
!! TAAATAATACTCATAGTATG+TGG - chr8_1:22534146-22534165 None:intergenic 20.0%
!! AAAAGCAATAAAATTAGCAA+CGG - chr8_1:22534338-22534357 None:intergenic 20.0%
!!! ATTGCTTTTTCAACTTTTTT+CGG + chr8_1:22534349-22534368 Msa1185390:intron 20.0%
!! GTTCTATATTTATGTAAAAG+GGG - chr8_1:22534620-22534639 None:intergenic 20.0%
!! AAAAGTGGAATATATTGAAT+TGG + chr8_1:22534861-22534880 Msa1185390:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr8_1:22534862-22534881 Msa1185390:intron 20.0%
!!! TTTTTTTCAATCATTGTTAC+TGG - chr8_1:22535011-22535030 None:intergenic 20.0%
!!! TGAATTCATGAAAATTTGTT+TGG + chr8_1:22535492-22535511 Msa1185390:intron 20.0%
!! AAAAAGCCATATATGTATAA+TGG - chr8_1:22535713-22535732 None:intergenic 20.0%
!! AAATATATGCAAAAAGTTGA+AGG - chr8_1:22535970-22535989 None:intergenic 20.0%
! ACTTTCTCAAAAAGAAGAAA+TGG + chr8_1:22531640-22531659 Msa1185390:CDS 25.0%
! AAATGATTCTATCAACCATT+GGG - chr8_1:22531864-22531883 None:intergenic 25.0%
! AAAATGATTCTATCAACCAT+TGG - chr8_1:22531865-22531884 None:intergenic 25.0%
! AAATTATTAATGTGTCATGG+AGG - chr8_1:22532200-22532219 None:intergenic 25.0%
!!! AGGGTTCTAATTTTTTTTAG+GGG + chr8_1:22532239-22532258 Msa1185390:intron 25.0%
! TAAATATGTCGATCTATGAT+TGG - chr8_1:22532328-22532347 None:intergenic 25.0%
!! CGTTTTCATCAACAAAAAAA+AGG - chr8_1:22532364-22532383 None:intergenic 25.0%
! AATAAAGCTGGAAATAAAGA+TGG - chr8_1:22532827-22532846 None:intergenic 25.0%
!!! TTATTTCCAGCTTTATTACA+AGG + chr8_1:22532830-22532849 Msa1185390:intron 25.0%
! AAAAGTGAAGCTGATTAATT+TGG - chr8_1:22533196-22533215 None:intergenic 25.0%
! TTGAAACTCATAACACATTA+TGG + chr8_1:22533255-22533274 Msa1185390:intron 25.0%
! TCTATGAAAATTATATGCCA+TGG - chr8_1:22533298-22533317 None:intergenic 25.0%
!!! TAAGTCAGTATTTTGAGTAA+AGG + chr8_1:22533386-22533405 Msa1185390:intron 25.0%
!!! TTCAAATATTTCTGGATTAG+TGG - chr8_1:22533543-22533562 None:intergenic 25.0%
! TACATGCATGTTTAATACTA+CGG + chr8_1:22533925-22533944 Msa1185390:intron 25.0%
!!! TGGTTTTGTTGAAATTATAG+TGG + chr8_1:22533948-22533967 Msa1185390:intron 25.0%
! TGTTAATTTAGTAAGATGGT+GGG - chr8_1:22533994-22534013 None:intergenic 25.0%
! TTGTTAATTTAGTAAGATGG+TGG - chr8_1:22533995-22534014 None:intergenic 25.0%
!!! TTTTTTTTTCGTTTTAGGAG+CGG + chr8_1:22534191-22534210 Msa1185390:intron 25.0%
! AAAAAAAAAACTCGAGAAAG+TGG + chr8_1:22534232-22534251 Msa1185390:intron 25.0%
! AAAAAAAAACTCGAGAAAGT+GGG + chr8_1:22534233-22534252 Msa1185390:intron 25.0%
! AAATAACACTCATAGTATGT+TGG + chr8_1:22534266-22534285 Msa1185390:intron 25.0%
!!! CATTATTTTTGTTTTAGGGT+CGG + chr8_1:22534296-22534315 Msa1185390:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr8_1:22534908-22534927 Msa1185390:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr8_1:22534909-22534928 Msa1185390:intron 25.0%
! ACAAATTATGGTTGAACAAT+TGG + chr8_1:22535416-22535435 Msa1185390:CDS 25.0%
!! AACAATTGAAGTGTTTAACT+TGG - chr8_1:22535579-22535598 None:intergenic 25.0%
!! TTCAATTTCAACCATTTTGT+AGG + chr8_1:22535622-22535641 Msa1185390:intron 25.0%
! TCTGTACCATTATACATATA+TGG + chr8_1:22535704-22535723 Msa1185390:intron 25.0%
! TATCCATACTCATATTCATA+GGG - chr8_1:22535906-22535925 None:intergenic 25.0%
! ATATCCATACTCATATTCAT+AGG - chr8_1:22535907-22535926 None:intergenic 25.0%
!!! TTTTGGGTTAGAGTTTTTAA+TGG + chr8_1:22536136-22536155 Msa1185390:intron 25.0%
!! CTAATGTTAACCTCTTTTAT+TGG + chr8_1:22536173-22536192 Msa1185390:intron 25.0%
!! TCTATGAATTTGGAAGTGTT+GGG + chr8_1:22531743-22531762 Msa1185390:CDS 30.0%
! GAAACTGATTCAAAGAAGAA+AGG - chr8_1:22531964-22531983 None:intergenic 30.0%
AATCAGTTTCTTTCACCAAA+TGG + chr8_1:22531974-22531993 Msa1185390:intron 30.0%
! TTATCTTTCAGGTGTTGTAA+AGG - chr8_1:22532396-22532415 None:intergenic 30.0%
AGGTTTCAGCTTAGAAATAA+TGG + chr8_1:22532428-22532447 Msa1185390:intron 30.0%
CTGAGAAACAAGAAATATCT+AGG - chr8_1:22532464-22532483 None:intergenic 30.0%
!! TAGAATTTGGAAGTACTCTT+TGG + chr8_1:22532865-22532884 Msa1185390:intron 30.0%
! TGGCTTTTTAGATCAATTTG+AGG + chr8_1:22532885-22532904 Msa1185390:intron 30.0%
CTTAAATTGGTCCAAAGAAA+GGG - chr8_1:22533113-22533132 None:intergenic 30.0%
TCTTAAATTGGTCCAAAGAA+AGG - chr8_1:22533114-22533133 None:intergenic 30.0%
AAATCCTTGTGGTTGAAATT+TGG + chr8_1:22533353-22533372 Msa1185390:intron 30.0%
AATCCTTGTGGTTGAAATTT+GGG + chr8_1:22533354-22533373 Msa1185390:intron 30.0%
! GGATTAGTGGAATTTATATG+TGG - chr8_1:22533530-22533549 None:intergenic 30.0%
AGGGTTGGAAAAAAAGATTA+CGG - chr8_1:22534100-22534119 None:intergenic 30.0%
!!! AAGTATTTTCGTTTTAGGGT+TGG - chr8_1:22534115-22534134 None:intergenic 30.0%
!!! TTTTTTTTCGTTTTAGGAGC+GGG + chr8_1:22534192-22534211 Msa1185390:intron 30.0%
AAAAAAAACTCGAGAAAGTG+GGG + chr8_1:22534234-22534253 Msa1185390:intron 30.0%
CAAAGTATGAATCTCTTCAA+AGG + chr8_1:22534564-22534583 Msa1185390:intron 30.0%
AGTAAATGACTCAGTTAATC+CGG + chr8_1:22534944-22534963 Msa1185390:intron 30.0%
CCTGAAATGACATTACATAT+TGG - chr8_1:22535067-22535086 None:intergenic 30.0%
! CCAATATGTAATGTCATTTC+AGG + chr8_1:22535064-22535083 Msa1185390:intron 30.0%
AATCTTGAAAAACAGCTTGA+AGG + chr8_1:22535135-22535154 Msa1185390:CDS 30.0%
! TGTGATCCAATTTAGAACAA+TGG + chr8_1:22535358-22535377 Msa1185390:intron 30.0%
! GATCAACCATTGTTCTAAAT+TGG - chr8_1:22535367-22535386 None:intergenic 30.0%
TCAATTGCAGACACAAATTA+TGG + chr8_1:22535404-22535423 Msa1185390:intron 30.0%
ATGTACCCTATTTGCAAAAA+GGG - chr8_1:22535940-22535959 None:intergenic 30.0%
AACTCTAACCCAAAACTAAT+TGG - chr8_1:22536131-22536150 None:intergenic 30.0%
!! TTTTTGAGAAAGTTACCTGC+CGG - chr8_1:22531633-22531652 None:intergenic 35.0%
ACGGCTAGAGAAAATGATAA+GGG - chr8_1:22531716-22531735 None:intergenic 35.0%
CAAATTCATAGAGTTTGCCA+CGG - chr8_1:22531735-22531754 None:intergenic 35.0%
! CTCTATGAATTTGGAAGTGT+TGG + chr8_1:22531742-22531761 Msa1185390:CDS 35.0%
TTCTATCAACCATTGGGATT+TGG - chr8_1:22531858-22531877 None:intergenic 35.0%
TTCTTTCACCAAATGGTTAC+TGG + chr8_1:22531981-22532000 Msa1185390:intron 35.0%
TGTACTGTTGTGTAAGATCT+AGG + chr8_1:22532628-22532647 Msa1185390:intron 35.0%
GTACTGTTGTGTAAGATCTA+GGG + chr8_1:22532629-22532648 Msa1185390:intron 35.0%
!! TTTCCAGCTTTATTACAAGG+TGG + chr8_1:22532833-22532852 Msa1185390:intron 35.0%
!! GCAAGATGATTTTGATGCTA+AGG + chr8_1:22533029-22533048 Msa1185390:intron 35.0%
GCTAAGGTCTTACAAATCAT+TGG + chr8_1:22533045-22533064 Msa1185390:intron 35.0%
! AAGGGAAGGAAACTTTTGAA+TGG - chr8_1:22533095-22533114 None:intergenic 35.0%
AAAGTTTCCTTCCCTTTCTT+TGG + chr8_1:22533099-22533118 Msa1185390:intron 35.0%
TCAACCACAAGGATTTCATA+GGG - chr8_1:22533349-22533368 None:intergenic 35.0%
TTCAACCACAAGGATTTCAT+AGG - chr8_1:22533350-22533369 None:intergenic 35.0%
TAACCCAAATTTCAACCACA+AGG - chr8_1:22533360-22533379 None:intergenic 35.0%
CAAGAGTAAAGAAACACAGT+AGG + chr8_1:22533483-22533502 Msa1185390:intron 35.0%
! TTGGTATCGTTCAATGGTTT+TGG - chr8_1:22533745-22533764 None:intergenic 35.0%
AAACCATTGAACGATACCAA+CGG + chr8_1:22533745-22533764 Msa1185390:CDS 35.0%
GTAACTTCACAAAATCACTG+TGG - chr8_1:22533908-22533927 None:intergenic 35.0%
ATGCATGTTTAATACTACGG+TGG + chr8_1:22533928-22533947 Msa1185390:intron 35.0%
ATAAGTGTGAAATGAGCCAA+GGG - chr8_1:22534755-22534774 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG - chr8_1:22534756-22534775 None:intergenic 35.0%
GAGTTATAAAGGGGAAAAAG+TGG + chr8_1:22534846-22534865 Msa1185390:intron 35.0%
GTAAATGACTCAGTTAATCC+GGG + chr8_1:22534945-22534964 Msa1185390:intron 35.0%
TCTTGGACCTTTGAACATAA+AGG + chr8_1:22535104-22535123 Msa1185390:CDS 35.0%
TGCAACTCCTTTATGTTCAA+AGG - chr8_1:22535114-22535133 None:intergenic 35.0%
CGCATCTACATATATATGCA+TGG + chr8_1:22535198-22535217 Msa1185390:intron 35.0%
TAGATGACGTTCCTACAAAA+TGG - chr8_1:22535636-22535655 None:intergenic 35.0%
! ATTTTGTAGGAACGTCATCT+AGG + chr8_1:22535635-22535654 Msa1185390:intron 35.0%
GAACAAGCAACTAAGGATTA+AGG + chr8_1:22535664-22535683 Msa1185390:CDS 35.0%
! AAACTCCATTTTCAGCTTGA+AGG + chr8_1:22535787-22535806 Msa1185390:intron 35.0%
AGGAGAGGGATTTAATCTTA+AGG + chr8_1:22535807-22535826 Msa1185390:CDS 35.0%
GGGATTTAATCTTAAGGCAA+TGG + chr8_1:22535813-22535832 Msa1185390:CDS 35.0%
TTAAGGCAATGGAAAGTTTG+TGG + chr8_1:22535824-22535843 Msa1185390:CDS 35.0%
!! ATATTCATAGGGTTGGTTTG+AGG - chr8_1:22535895-22535914 None:intergenic 35.0%
CATACTCATATTCATAGGGT+TGG - chr8_1:22535902-22535921 None:intergenic 35.0%
CAACCCTATGAATATGAGTA+TGG + chr8_1:22535900-22535919 Msa1185390:CDS 35.0%
! CAGAACCCTTTTTGCAAATA+GGG + chr8_1:22535932-22535951 Msa1185390:CDS 35.0%
CATGTACCCTATTTGCAAAA+AGG - chr8_1:22535941-22535960 None:intergenic 35.0%
TGGTATCTGTCCAATAAAAG+AGG - chr8_1:22536186-22536205 None:intergenic 35.0%
ATGCTCTTGGAAACATTAGA+TGG - chr8_1:22536234-22536253 None:intergenic 35.0%
ATCTAATGTTTCCAAGAGCA+TGG + chr8_1:22536233-22536252 Msa1185390:CDS 35.0%
CACGGCTAGAGAAAATGATA+AGG - chr8_1:22531717-22531736 None:intergenic 40.0%
! CTTATCATTTTCTCTAGCCG+TGG + chr8_1:22531715-22531734 Msa1185390:CDS 40.0%
CGTGGCAAACTCTATGAATT+TGG + chr8_1:22531733-22531752 Msa1185390:CDS 40.0%
GCAGAAAACCAGTAACCATT+TGG - chr8_1:22531992-22532011 None:intergenic 40.0%
! TCCTTTTCTGGATCAGTTGA+TGG + chr8_1:22532165-22532184 Msa1185390:intron 40.0%
TCCATCAACTGATCCAGAAA+AGG - chr8_1:22532169-22532188 None:intergenic 40.0%
CTTTATTACAAGGTGGAGCA+GGG + chr8_1:22532840-22532859 Msa1185390:intron 40.0%
AATTGGTCCAAAGAAAGGGA+AGG - chr8_1:22533109-22533128 None:intergenic 40.0%
!! TGTGAATGTGTTGACTTCCA+TGG + chr8_1:22533278-22533297 Msa1185390:intron 40.0%
AAAGCCCTATGAAATCCTTG+TGG + chr8_1:22533342-22533361 Msa1185390:intron 40.0%
AAAGAAACACAGTAGGTACC+TGG + chr8_1:22533490-22533509 Msa1185390:intron 40.0%
AAGAAACACAGTAGGTACCT+GGG + chr8_1:22533491-22533510 Msa1185390:intron 40.0%
GTGTGTCACAATCAATTTGG+TGG - chr8_1:22533797-22533816 None:intergenic 40.0%
CCTGTGTGTCACAATCAATT+TGG - chr8_1:22533800-22533819 None:intergenic 40.0%
CCAAATTGATTGTGACACAC+AGG + chr8_1:22533797-22533816 Msa1185390:CDS 40.0%
TCTCTCTAGTGCATTGAGAT+TGG - chr8_1:22534051-22534070 None:intergenic 40.0%
AATCTCTTCAAAGGACTCAG+AGG + chr8_1:22534573-22534592 Msa1185390:intron 40.0%
AGCCAAGGGCTCAATTAATT+CGG - chr8_1:22534741-22534760 None:intergenic 40.0%
AATTGGAAGAGCTTCGCAAA+AGG + chr8_1:22535433-22535452 Msa1185390:CDS 40.0%
ATTGGAAGAGCTTCGCAAAA+GGG + chr8_1:22535434-22535453 Msa1185390:CDS 40.0%
GAGACTTGAACAAGCAACTA+AGG + chr8_1:22535657-22535676 Msa1185390:CDS 40.0%
! CATTTTCAGCTTGAAGGAGA+GGG + chr8_1:22535793-22535812 Msa1185390:intron 40.0%
TTTGCAAAAAGGGTTCTGCT+TGG - chr8_1:22535930-22535949 None:intergenic 40.0%
! GCAGAACCCTTTTTGCAAAT+AGG + chr8_1:22535931-22535950 Msa1185390:CDS 40.0%
CTTGAACATACTGGTACTGT+TGG - chr8_1:22536206-22536225 None:intergenic 40.0%
TTGTGAGACTAACTTCATGC+AGG + chr8_1:22536257-22536276 Msa1185390:CDS 40.0%
TGTGAGACTAACTTCATGCA+GGG + chr8_1:22536258-22536277 Msa1185390:CDS 40.0%
TTGTGAGGTCCAAATCCCAA+TGG + chr8_1:22531846-22531865 Msa1185390:intron 45.0%
CCAGAAAAGGAGAGAGATGA+GGG - chr8_1:22532156-22532175 None:intergenic 45.0%
TCCAGAAAAGGAGAGAGATG+AGG - chr8_1:22532157-22532176 None:intergenic 45.0%
GCTCCACCTTGTAATAAAGC+TGG - chr8_1:22532839-22532858 None:intergenic 45.0%
! GCTTTATTACAAGGTGGAGC+AGG + chr8_1:22532839-22532858 Msa1185390:intron 45.0%
! GTGGAGCAGGGTTTAGAATT+TGG + chr8_1:22532852-22532871 Msa1185390:intron 45.0%
GTGGACAAAATTACACACCC+AGG - chr8_1:22533511-22533530 None:intergenic 45.0%
! GAGGATTAAATGAGCACCGT+TGG - chr8_1:22533764-22533783 None:intergenic 45.0%
! ATTTGGTGGTCATCTTGCTG+AGG - chr8_1:22533783-22533802 None:intergenic 45.0%
!!! TCTGTTTTGGCAAGCAGAGT+TGG + chr8_1:22534516-22534535 Msa1185390:intron 45.0%
CCTTCAGCTTAGAAACCTCT+TGG - chr8_1:22534544-22534563 None:intergenic 45.0%
CCAAGAGGTTTCTAAGCTGA+AGG + chr8_1:22534541-22534560 Msa1185390:CDS 45.0%
CTCAATTAATTCGGGACGGA+GGG - chr8_1:22534732-22534751 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+CGG - chr8_1:22534736-22534755 None:intergenic 45.0%
TCCCGAATTAATTGAGCCCT+TGG + chr8_1:22534736-22534755 Msa1185390:intron 45.0%
GCCAAGGGCTCAATTAATTC+GGG - chr8_1:22534740-22534759 None:intergenic 45.0%
ATGACTCAGTTAATCCGGGA+CGG + chr8_1:22534949-22534968 Msa1185390:intron 45.0%
! TGTCATTTCAGGCAGTTGCT+TGG + chr8_1:22535075-22535094 Msa1185390:intron 45.0%
GTCATTTCAGGCAGTTGCTT+GGG + chr8_1:22535076-22535095 Msa1185390:intron 45.0%
TCATTTCAGGCAGTTGCTTG+GGG + chr8_1:22535077-22535096 Msa1185390:intron 45.0%
AAGGTGCATTAGCACAAGCT+AGG + chr8_1:22535154-22535173 Msa1185390:CDS 45.0%
AGCACAAGCTAGGCAAAGAA+AGG + chr8_1:22535164-22535183 Msa1185390:CDS 45.0%
CCTCTCCTTCAAGCTGAAAA+TGG - chr8_1:22535795-22535814 None:intergenic 45.0%
! CCATTTTCAGCTTGAAGGAG+AGG + chr8_1:22535792-22535811 Msa1185390:intron 45.0%
! TGGAGCTCTAATTCAGTTGC+TGG + chr8_1:22535844-22535863 Msa1185390:CDS 45.0%
!! GTTGGTTTGAGGTGTCTGAA+AGG - chr8_1:22535884-22535903 None:intergenic 45.0%
ATGGCTCAGCTTGAACATAC+TGG - chr8_1:22536215-22536234 None:intergenic 45.0%
AGACTAACTTCATGCAGGGA+TGG + chr8_1:22536262-22536281 Msa1185390:CDS 45.0%
!!! TTAGTTTTTTTTTTTTTTTT+AGG + chr8_1:22534640-22534659 Msa1185390:intron 5.0%
!! AATAATTAAAATAAAATCAT+AGG - chr8_1:22535519-22535538 None:intergenic 5.0%
! CCCTCATCTCTCTCCTTTTC+TGG + chr8_1:22532153-22532172 Msa1185390:intron 50.0%
GCACCGTTGGTATCGTTCAA+TGG - chr8_1:22533751-22533770 None:intergenic 50.0%
!! CAAGCAGAGTTGGTACCAAG+AGG + chr8_1:22534526-22534545 Msa1185390:intron 50.0%
GCTCAATTAATTCGGGACGG+AGG - chr8_1:22534733-22534752 None:intergenic 50.0%
AACATATACTCCCTCCGTCC+CGG - chr8_1:22534966-22534985 None:intergenic 50.0%
CAGTTGCTTGGGGAAGATCT+TGG + chr8_1:22535087-22535106 Msa1185390:CDS 50.0%
AGTCTCACAAGCCATGCTCT+TGG - chr8_1:22536247-22536266 None:intergenic 50.0%
ACTCAGTTAATCCGGGACGG+AGG + chr8_1:22534952-22534971 Msa1185390:intron 55.0%
CTCAGTTAATCCGGGACGGA+GGG + chr8_1:22534953-22534972 Msa1185390:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 22531616 22536290 22531616 ID=Msa1185390;Name=Msa1185390
chr8_1 mRNA 22531616 22536290 22531616 ID=Msa1185390-mRNA-1;Parent=Msa1185390;Name=Msa1185390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.85|0.62|1|1|0.75|8|0|231
chr8_1 exon 22531616 22531764 22531616 ID=Msa1185390-mRNA-1:exon:8310;Parent=Msa1185390-mRNA-1
chr8_1 exon 22533737 22533818 22533737 ID=Msa1185390-mRNA-1:exon:8311;Parent=Msa1185390-mRNA-1
chr8_1 exon 22534533 22534567 22534533 ID=Msa1185390-mRNA-1:exon:8312;Parent=Msa1185390-mRNA-1
chr8_1 exon 22535086 22535185 22535086 ID=Msa1185390-mRNA-1:exon:8313;Parent=Msa1185390-mRNA-1
chr8_1 exon 22535414 22535455 22535414 ID=Msa1185390-mRNA-1:exon:8314;Parent=Msa1185390-mRNA-1
chr8_1 exon 22535644 22535685 22535644 ID=Msa1185390-mRNA-1:exon:8315;Parent=Msa1185390-mRNA-1
chr8_1 exon 22535802 22535953 22535802 ID=Msa1185390-mRNA-1:exon:8316;Parent=Msa1185390-mRNA-1
chr8_1 exon 22536200 22536290 22536200 ID=Msa1185390-mRNA-1:exon:8317;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22531616 22531764 22531616 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22533737 22533818 22533737 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22534533 22534567 22534533 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22535086 22535185 22535086 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22535414 22535455 22535414 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22535644 22535685 22535644 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22535802 22535953 22535802 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
chr8_1 CDS 22536200 22536290 22536200 ID=Msa1185390-mRNA-1:cds;Parent=Msa1185390-mRNA-1
Gene Sequence

>Msa1185390

GAGAACAAAATAAACCGGCAGGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGCTGAAGTTGCCCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGGAACTACCAAAACCATTGAACGATACCAACGGTGCTCATTTAATCCTCAGCAAGATGACCACCAAATTGATTGTGACACACAGAGTTGGTACCAAGAGGTTTCTAAGCTGAAGGCAAAGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGTTGCAGAATCTTGAAAAACAGCTTGAAGGTGCATTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGGTTGAACAATTGGAAGAGCTTCGCAAAAGGGAACGTCATCTAGGAGACTTGAACAAGCAACTAAGGATTAAGCTTGAAGGAGAGGGATTTAATCTTAAGGCAATGGAAAGTTTGTGGAGCTCTAATTCAGTTGCTGGAAATAGCAACTTTACCTTTCAGACACCTCAAACCAACCCTATGAATATGAGTATGGATATCCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTACCAGTATGTTCAAGCTGAGCCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATGCTT
Protein sequence

>Msa1185390

ENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQSWYQEVSKLKAKQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMVEQLEELRKRERHLGDLNKQLRIKLEGEGFNLKAMESLWSSNSVAGNSNFTFQTPQTNPMNMSMDIQAEPFLQIGYQQYQYVQAEPSNVSKSMACETNFMQGWML