AlfalfaGEDB | Msa1185650

M. sativa cultivar zhongmu-4 / Msa1185650

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185650	XP_003625199.1	85.340	191	28	0	4	194	129	319	2.31e-114	338

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185650	sp\|Q66GR3\|BH130_ARATH	58.678	121	47	1	77	194	235	355	2.72e-38	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1185650	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185650	MtrunA17_Chr7g0258181	85.340	191	28	0	4	194	129	319	2.13e-118	338
Msa1185650	MtrunA17_Chr1g0174271	49.761	209	76	2	7	189	164	369	4.07e-57	184
Msa1185650	MtrunA17_Chr4g0032951	62.376	101	38	0	88	188	325	425	6.41e-39	138
Msa1185650	MtrunA17_Chr2g0329041	62.376	101	37	1	88	188	302	401	2.10e-36	130
Msa1185650	MtrunA17_Chr3g0087771	53.982	113	45	1	77	189	288	393	8.62e-34	124
Msa1185650	MtrunA17_Chr8g0351881	51.613	124	56	1	69	188	263	386	3.79e-27	105
Msa1185650	MtrunA17_Chr4g0014771	61.538	78	30	0	112	189	112	189	4.20e-27	101
Msa1185650	MtrunA17_Chr1g0213791	48.571	105	51	2	85	188	233	335	1.92e-23	95.1
Msa1185650	MtrunA17_Chr1g0152131	49.296	71	36	0	116	186	258	328	1.72e-14	70.9
Msa1185650	MtrunA17_Chr4g0074161	50.000	68	33	1	118	185	206	272	2.64e-14	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185650	AT2G42280.1	58.678	121	47	1	77	194	235	355	2.76e-39	137
Msa1185650	AT2G42280.3	63.208	106	36	1	77	179	235	340	2.03e-35	127
Msa1185650	AT1G51140.1	58.252	103	38	2	88	190	279	376	2.66e-33	122
Msa1185650	AT2G43140.1	52.427	103	48	1	87	188	102	204	5.32e-30	110
Msa1185650	AT2G43140.2	52.427	103	48	1	87	188	199	301	1.44e-29	111
Msa1185650	AT1G05805.1	50.980	102	48	2	88	188	253	353	8.24e-26	102
Msa1185650	AT1G35460.1	53.659	82	38	0	110	191	173	254	3.48e-25	98.6
Msa1185650	AT4G09180.1	54.118	85	37	1	104	188	172	254	4.26e-24	95.9
Msa1185650	AT1G35460.2	68.085	47	15	0	110	156	173	219	6.64e-15	70.9
Msa1185650	AT5G58010.1	50.000	68	33	1	118	185	99	165	2.58e-14	70.1

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Find 29 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGGAGTGATGGCAT+TGG	0.649328	8_1:+23001009	Msa1185650:CDS
AACATATCGAACAATCAAAT+TGG	0.332870	8_1:+23000937	Msa1185650:CDS
AACATCTCTGATGACTTTCT+TGG	0.289008	8_1:-23001263	None:intergenic
AACTCTAAAATGGGGAGTGA+TGG	0.522219	8_1:+23001003	Msa1185650:CDS
AAGACAAGTAGTTAGCAATG+AGG	0.698590	8_1:+23001053	Msa1185650:CDS
AATGAGGATGCTCAATATTA+TGG	0.342968	8_1:+23001069	Msa1185650:CDS
ACTATTTCGGCAAGGCTTCT+AGG	0.250386	8_1:-23001362	None:intergenic
ATACTGATTGGAACAGAATC+TGG	0.286669	8_1:-23001311	None:intergenic
ATCAGTATCAAAGCAAAGAG+AGG	0.613324	8_1:+23001326	Msa1185650:CDS
ATCATTATACCTGACAGTGA+TGG	0.687741	8_1:+23000895	Msa1185650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGGATGCTCAATATTA+TGG	+	chr8_1:23001069-23001088	Msa1185650:CDS	30.0%
AAATGAACATGTTACATACC+TGG	-	chr8_1:23001122-23001141	None:intergenic	30.0%
GATTGTTCGAAACATTGATA+AGG	+	chr8_1:23001427-23001446	Msa1185650:CDS	30.0%
GAACTAATCATGATTAACTG+AGG	-	chr8_1:23001658-23001677	None:intergenic	30.0%
AATGAGGATGCTCAATATTA+TGG	+	chr8_1:23001069-23001088	Msa1185650:CDS	30.0%
AAATGAACATGTTACATACC+TGG	-	chr8_1:23001122-23001141	None:intergenic	30.0%
GATTGTTCGAAACATTGATA+AGG	+	chr8_1:23001427-23001446	Msa1185650:CDS	30.0%
GAACTAATCATGATTAACTG+AGG	-	chr8_1:23001658-23001677	None:intergenic	30.0%
ATCATTATACCTGACAGTGA+TGG	+	chr8_1:23000895-23000914	Msa1185650:CDS	35.0%
GATAACATTCTCAAGGAAGA+AGG	-	chr8_1:23000979-23000998	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	23000892	23001763	23000892	ID=Msa1185650;Name=Msa1185650
chr8_1	mRNA	23000892	23001763	23000892	ID=Msa1185650-mRNA-1;Parent=Msa1185650;Name=Msa1185650-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|1\|1\|1\|4\|0\|194
chr8_1	exon	23000892	23001122	23000892	ID=Msa1185650-mRNA-1:exon:8487;Parent=Msa1185650-mRNA-1
chr8_1	exon	23001212	23001448	23001212	ID=Msa1185650-mRNA-1:exon:8488;Parent=Msa1185650-mRNA-1
chr8_1	exon	23001548	23001616	23001548	ID=Msa1185650-mRNA-1:exon:8489;Parent=Msa1185650-mRNA-1
chr8_1	exon	23001716	23001763	23001716	ID=Msa1185650-mRNA-1:exon:8490;Parent=Msa1185650-mRNA-1
chr8_1	CDS	23000892	23001122	23000892	ID=Msa1185650-mRNA-1:cds;Parent=Msa1185650-mRNA-1
chr8_1	CDS	23001212	23001448	23001212	ID=Msa1185650-mRNA-1:cds;Parent=Msa1185650-mRNA-1
chr8_1	CDS	23001548	23001616	23001548	ID=Msa1185650-mRNA-1:cds;Parent=Msa1185650-mRNA-1
chr8_1	CDS	23001716	23001763	23001716	ID=Msa1185650-mRNA-1:cds;Parent=Msa1185650-mRNA-1

Gene Sequence

>Msa1185650

TTGATCATTATACCTGACAGTGATGGTGAACTTACTCTATCTATGAACATATCGAACAATCAAATTGGCTTCTCCCTTAGAAGTCCTTCTTCCTTGAGAATGTTATCACAGAACTCTAAAATGGGGAGTGATGGCATTGGAACAACTAGCCGCGATGATCGAAGACAAGTAGTTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGAATCTAATAACCAGAATGTAGGCGTACGAAATCAAATTGATACACTATCACATCACTTGAGTTTGCCAAGAAAGTCATCAGAGATGTTTGTTGTGGAGAATTTGCTTCAGTTTCCAGATTCTGTTCCAATCAGTATCAAAGCAAAGAGAGGCTTTGAAACACATCCTAGAAGCCTTGCCGAAATAGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGATTGTTCGAAACATTGATAAGCAAACTTGCAAAATAGAAATGTTAGACTTGGTTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGACTATGAGTGTAAAAAGAGCCAAGTGCAGATGGAGAAACCAAAAATGA

Protein sequence

>Msa1185650

LIIIPDSDGELTLSMNISNNQIGFSLRSPSSLRMLSQNSKMGSDGIGTTSRDDRRQVVSNEDAQYYGHKFIYESNNQNVGVRNQIDTLSHHLSLPRKSSEMFVVENLLQFPDSVPISIKAKRGFETHPRSLAEIVRRTRISERMRKLQEIVRNIDKQTCKIEMLDLVVEYIKDLQKQLKTMSVKRAKCRWRNQK*