Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186440 | XP_003627814.1 | 94.972 | 179 | 7 | 1 | 1 | 179 | 1 | 177 | 9.91e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186440 | sp|Q2RAP3|ORR9_ORYSJ | 69.565 | 161 | 44 | 2 | 1 | 160 | 1 | 157 | 6.18e-75 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1186440 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186440 | MtrunA17_Chr8g0352871 | 94.972 | 179 | 7 | 1 | 1 | 179 | 1 | 177 | 9.11e-123 | 343 |
| Msa1186440 | MtrunA17_Chr3g0082861 | 80.380 | 158 | 27 | 3 | 8 | 163 | 3 | 158 | 1.08e-85 | 249 |
| Msa1186440 | MtrunA17_Chr7g0256551 | 73.718 | 156 | 40 | 1 | 1 | 155 | 1 | 156 | 1.01e-82 | 244 |
| Msa1186440 | MtrunA17_Chr3g0124861 | 58.125 | 160 | 56 | 2 | 6 | 155 | 19 | 177 | 4.63e-59 | 184 |
| Msa1186440 | MtrunA17_Chr4g0059571 | 54.167 | 168 | 65 | 3 | 4 | 170 | 21 | 177 | 1.44e-53 | 169 |
| Msa1186440 | MtrunA17_Chr5g0414931 | 57.042 | 142 | 57 | 1 | 8 | 149 | 15 | 152 | 3.21e-52 | 166 |
| Msa1186440 | MtrunA17_Chr1g0170741 | 59.155 | 142 | 53 | 2 | 8 | 149 | 7 | 143 | 6.96e-51 | 162 |
| Msa1186440 | MtrunA17_Chr3g0118211 | 50.296 | 169 | 67 | 3 | 4 | 171 | 18 | 170 | 7.90e-51 | 162 |
| Msa1186440 | MtrunA17_Chr4g0021731 | 81.522 | 92 | 9 | 1 | 3 | 94 | 5 | 88 | 2.43e-48 | 152 |
| Msa1186440 | MtrunA17_Chr3g0128691 | 57.246 | 138 | 49 | 3 | 10 | 145 | 19 | 148 | 5.33e-48 | 153 |
| Msa1186440 | MtrunA17_Chr8g0376881 | 30.556 | 144 | 80 | 3 | 11 | 154 | 31 | 154 | 1.90e-14 | 70.5 |
| Msa1186440 | MtrunA17_Chr8g0345901 | 28.058 | 139 | 83 | 1 | 11 | 149 | 38 | 159 | 5.21e-14 | 69.3 |
| Msa1186440 | MtrunA17_Chr4g0030271 | 30.147 | 136 | 78 | 2 | 11 | 146 | 91 | 209 | 1.66e-13 | 67.8 |
| Msa1186440 | MtrunA17_Chr7g0275891 | 31.159 | 138 | 76 | 3 | 11 | 148 | 11 | 129 | 2.31e-13 | 67.0 |
| Msa1186440 | MtrunA17_Chr7g0275401 | 30.714 | 140 | 77 | 3 | 9 | 148 | 9 | 128 | 2.68e-13 | 66.2 |
| Msa1186440 | MtrunA17_Chr1g0149851 | 31.159 | 138 | 75 | 3 | 11 | 148 | 11 | 128 | 1.06e-12 | 65.5 |
| Msa1186440 | MtrunA17_Chr1g0149841 | 30.435 | 138 | 76 | 3 | 11 | 148 | 11 | 128 | 1.79e-12 | 64.7 |
| Msa1186440 | MtrunA17_Chr3g0123131 | 28.472 | 144 | 83 | 3 | 11 | 154 | 19 | 142 | 2.00e-12 | 64.7 |
| Msa1186440 | MtrunA17_Chr3g0127941 | 27.338 | 139 | 84 | 2 | 11 | 149 | 58 | 179 | 7.27e-12 | 62.8 |
| Msa1186440 | MtrunA17_Chr1g0161431 | 27.586 | 145 | 85 | 3 | 11 | 155 | 17 | 141 | 7.35e-12 | 62.8 |
| Msa1186440 | MtrunA17_Chr4g0074411 | 27.083 | 144 | 85 | 3 | 11 | 154 | 24 | 147 | 2.12e-11 | 61.6 |
| Msa1186440 | MtrunA17_Chr4g0067981 | 27.972 | 143 | 83 | 3 | 9 | 151 | 35 | 157 | 5.33e-11 | 60.5 |
| Msa1186440 | MtrunA17_Chr7g0276361 | 26.515 | 132 | 78 | 2 | 15 | 146 | 22 | 134 | 7.52e-11 | 60.1 |
| Msa1186440 | MtrunA17_Chr3g0137101 | 26.994 | 163 | 90 | 4 | 11 | 173 | 14 | 147 | 7.95e-11 | 60.1 |
| Msa1186440 | MtrunA17_Chr1g0181811 | 27.941 | 136 | 81 | 1 | 11 | 146 | 87 | 205 | 9.16e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186440 | AT2G41310.1 | 52.995 | 217 | 61 | 1 | 1 | 176 | 1 | 217 | 9.40e-75 | 224 |
| Msa1186440 | AT3G57040.2 | 65.476 | 168 | 50 | 2 | 1 | 163 | 1 | 165 | 2.73e-74 | 223 |
| Msa1186440 | AT3G57040.1 | 65.476 | 168 | 50 | 2 | 1 | 163 | 1 | 165 | 2.73e-74 | 223 |
| Msa1186440 | AT1G59940.1 | 59.333 | 150 | 52 | 3 | 7 | 155 | 31 | 172 | 1.08e-55 | 176 |
| Msa1186440 | AT1G59940.2 | 59.333 | 150 | 52 | 3 | 7 | 155 | 123 | 264 | 1.07e-53 | 173 |
| Msa1186440 | AT1G10470.3 | 60.000 | 140 | 48 | 1 | 7 | 146 | 18 | 149 | 1.08e-53 | 171 |
| Msa1186440 | AT1G10470.1 | 60.000 | 140 | 48 | 1 | 7 | 146 | 32 | 163 | 1.54e-53 | 171 |
| Msa1186440 | AT3G48100.1 | 56.081 | 148 | 56 | 2 | 2 | 148 | 18 | 157 | 3.01e-53 | 168 |
| Msa1186440 | AT5G62920.1 | 58.333 | 144 | 52 | 1 | 3 | 146 | 19 | 154 | 1.79e-52 | 166 |
| Msa1186440 | AT1G19050.1 | 52.532 | 158 | 67 | 1 | 8 | 165 | 23 | 172 | 5.38e-52 | 165 |
| Msa1186440 | AT3G56380.1 | 53.793 | 145 | 60 | 1 | 4 | 148 | 15 | 152 | 3.00e-51 | 162 |
| Msa1186440 | AT1G74890.1 | 53.741 | 147 | 60 | 1 | 8 | 154 | 17 | 155 | 2.73e-50 | 161 |
| Msa1186440 | AT2G40670.1 | 52.414 | 145 | 64 | 2 | 4 | 148 | 24 | 163 | 8.95e-50 | 158 |
| Msa1186440 | AT3G56380.2 | 53.425 | 146 | 60 | 2 | 4 | 148 | 15 | 153 | 1.85e-49 | 157 |
| Msa1186440 | AT2G40670.2 | 53.521 | 142 | 60 | 3 | 8 | 148 | 28 | 164 | 5.15e-48 | 154 |
| Msa1186440 | AT2G07440.1 | 62.857 | 70 | 26 | 0 | 95 | 164 | 9 | 78 | 1.42e-25 | 95.9 |
| Msa1186440 | AT1G10470.2 | 64.151 | 53 | 19 | 0 | 94 | 146 | 35 | 87 | 1.17e-17 | 76.6 |
| Msa1186440 | AT1G67710.1 | 30.496 | 141 | 78 | 3 | 11 | 151 | 13 | 133 | 1.64e-13 | 68.2 |
| Msa1186440 | AT5G07210.2 | 31.655 | 139 | 74 | 3 | 10 | 148 | 17 | 134 | 9.00e-13 | 65.9 |
| Msa1186440 | AT5G60100.7 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 9.52e-13 | 65.9 |
| Msa1186440 | AT5G60100.6 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 9.52e-13 | 65.9 |
| Msa1186440 | AT5G60100.4 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 9.52e-13 | 65.9 |
| Msa1186440 | AT5G60100.2 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.09e-12 | 65.9 |
| Msa1186440 | AT5G60100.5 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.87e-12 | 65.1 |
| Msa1186440 | AT5G60100.3 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.87e-12 | 65.1 |
| Msa1186440 | AT5G60100.1 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.87e-12 | 65.1 |
| Msa1186440 | AT2G25180.1 | 29.333 | 150 | 82 | 4 | 3 | 148 | 7 | 136 | 1.96e-12 | 65.1 |
| Msa1186440 | AT5G02810.1 | 28.676 | 136 | 80 | 3 | 11 | 146 | 80 | 198 | 6.99e-12 | 63.5 |
| Msa1186440 | AT3G16857.2 | 27.660 | 141 | 82 | 3 | 11 | 151 | 39 | 159 | 8.19e-11 | 60.5 |
| Msa1186440 | AT3G16857.1 | 27.660 | 141 | 82 | 3 | 11 | 151 | 39 | 159 | 8.46e-11 | 60.1 |
Find 34 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAGTTGAACTGGTTTC+AGG | 0.180778 | 8_1:+24733390 | None:intergenic |
| AGGCATGTCTTTGAAAGATT+TGG | 0.248483 | 8_1:+24733675 | None:intergenic |
| CCTTACCTGTTTATCCTAGA+TGG | 0.262329 | 8_1:+24733625 | None:intergenic |
| AGAGAATCAGTTTCATGTTT+TGG | 0.278264 | 8_1:-24735120 | Msa1186440:CDS |
| AGTAAGGCCTTGAAATTTCT+TGG | 0.299900 | 8_1:-24734866 | Msa1186440:CDS |
| CAAATTTAAATGCTAACTTT+TGG | 0.342808 | 8_1:+24733251 | None:intergenic |
| TATTGCTTCAGAAATTAATC+AGG | 0.389954 | 8_1:-24734807 | Msa1186440:intron |
| TGATTAATTTCTGAAGCAAT+AGG | 0.390281 | 8_1:+24734809 | None:intergenic |
| CAACATCAAAAGGAAGGTTA+TGG | 0.392701 | 8_1:-24733303 | Msa1186440:CDS |
| TACAGTTGATTCCGCTAGTA+AGG | 0.395161 | 8_1:-24734882 | Msa1186440:CDS |
| TTTACATCTGATAGTTGAAC+TGG | 0.396004 | 8_1:+24733383 | None:intergenic |
| AAGCAAACCAAGAAATTTCA+AGG | 0.430996 | 8_1:+24734859 | None:intergenic |
| ATGTTCCATCTAGGATAAAC+AGG | 0.435409 | 8_1:-24733630 | Msa1186440:intron |
| TATTGTATGCCAGGGATGAC+TGG | 0.449232 | 8_1:-24734664 | Msa1186440:CDS |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 8_1:-24734673 | Msa1186440:CDS |
| GAAATTTCTTGGTTTGCTTG+AGG | 0.464582 | 8_1:-24734855 | Msa1186440:CDS |
| TTTGTTGAAATCAAAAGTTA+AGG | 0.471711 | 8_1:-24733345 | Msa1186440:CDS |
| AACAACCTATCAACATCAAA+AGG | 0.471937 | 8_1:-24733313 | Msa1186440:CDS |
| TTGTAATTGTATCAGATGTT+TGG | 0.481004 | 8_1:-24733435 | Msa1186440:intron |
| TCTGAGGACATTATCACAAC+AGG | 0.481384 | 8_1:+24733655 | None:intergenic |
| CCTCAGAGAATGTTCCATCT+AGG | 0.494035 | 8_1:-24733639 | Msa1186440:CDS |
| TGTATCAGATGTTTGGAAGA+GGG | 0.502137 | 8_1:-24733428 | Msa1186440:intron |
| TTGTATCAGATGTTTGGAAG+AGG | 0.508259 | 8_1:-24733429 | Msa1186440:intron |
| TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 8_1:-24735079 | Msa1186440:CDS |
| AGATCATAGCCAGTCATCCC+TGG | 0.546401 | 8_1:+24734655 | None:intergenic |
| TATCTTTCAAGTAATGGGCA+TGG | 0.552535 | 8_1:-24735147 | None:intergenic |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 8_1:-24734672 | Msa1186440:CDS |
| GTTTGCTTGAGGATGAAATG+AGG | 0.583679 | 8_1:-24734844 | Msa1186440:CDS |
| GTCAATCACCAGATAAAACT+AGG | 0.591896 | 8_1:-24733274 | Msa1186440:CDS |
| ACCTATCAACATCAAAAGGA+AGG | 0.596799 | 8_1:-24733309 | Msa1186440:CDS |
| GTATCAGATGTTTGGAAGAG+GGG | 0.607171 | 8_1:-24733427 | Msa1186440:intron |
| TATCAGATGTTTGGAAGAGG+GGG | 0.611980 | 8_1:-24733426 | Msa1186440:intron |
| AAATTTCAAGGCCTTACTAG+CGG | 0.637282 | 8_1:+24734871 | None:intergenic |
| CCTAGATGGAACATTCTCTG+AGG | 0.709864 | 8_1:+24733639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr8_1:24734136-24734155 | Msa1186440:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr8_1:24734184-24734203 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr8_1:24734185-24734204 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr8_1:24734136-24734155 | Msa1186440:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr8_1:24734184-24734203 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr8_1:24734185-24734204 | None:intergenic | 10.0% |
| !!! | TTGTATAGTCTATTATTTTT+TGG | - | chr8_1:24733432-24733451 | Msa1186440:intron | 15.0% |
| !! | TACTGAATTGATAAATATTA+TGG | - | chr8_1:24733621-24733640 | Msa1186440:intron | 15.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | - | chr8_1:24733924-24733943 | Msa1186440:intron | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr8_1:24734032-24734051 | Msa1186440:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr8_1:24734070-24734089 | Msa1186440:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr8_1:24734108-24734127 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | chr8_1:24734470-24734489 | Msa1186440:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | + | chr8_1:24734571-24734590 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | + | chr8_1:24734572-24734591 | None:intergenic | 15.0% |
| !!! | TTGTATAGTCTATTATTTTT+TGG | - | chr8_1:24733432-24733451 | Msa1186440:intron | 15.0% |
| !! | TACTGAATTGATAAATATTA+TGG | - | chr8_1:24733621-24733640 | Msa1186440:intron | 15.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | - | chr8_1:24733924-24733943 | Msa1186440:intron | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr8_1:24734032-24734051 | Msa1186440:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr8_1:24734070-24734089 | Msa1186440:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr8_1:24734108-24734127 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | chr8_1:24734470-24734489 | Msa1186440:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | + | chr8_1:24734571-24734590 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | + | chr8_1:24734572-24734591 | None:intergenic | 15.0% |
| !! | TAGGAAACAATTTAGAAAAT+AGG | - | chr8_1:24733943-24733962 | Msa1186440:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr8_1:24734497-24734516 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | - | chr8_1:24735050-24735069 | Msa1186440:intron | 20.0% |
| !! | TAGGAAACAATTTAGAAAAT+AGG | - | chr8_1:24733943-24733962 | Msa1186440:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr8_1:24734497-24734516 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | - | chr8_1:24735050-24735069 | Msa1186440:intron | 20.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8_1:24733344-24733363 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8_1:24733342-24733361 | Msa1186440:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8_1:24733589-24733608 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8_1:24733588-24733607 | Msa1186440:intron | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | - | chr8_1:24733679-24733698 | Msa1186440:CDS | 25.0% |
| ! | TAGACTAATCAAATAACTAG+TGG | + | chr8_1:24733828-24733847 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8_1:24733897-24733916 | Msa1186440:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr8_1:24734492-24734511 | None:intergenic | 25.0% |
| !! | GGAAATTTTATACCATAACA+CGG | - | chr8_1:24734791-24734810 | Msa1186440:intron | 25.0% |
| ! | ATATTAGATTAACCGTGTTA+TGG | + | chr8_1:24734806-24734825 | None:intergenic | 25.0% |
| ! | CTGATACAATTACAAACAAT+TGG | + | chr8_1:24734955-24734974 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | - | chr8_1:24734960-24734979 | Msa1186440:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | + | chr8_1:24735048-24735067 | None:intergenic | 25.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8_1:24733344-24733363 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8_1:24733342-24733361 | Msa1186440:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8_1:24733589-24733608 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8_1:24733588-24733607 | Msa1186440:intron | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | - | chr8_1:24733679-24733698 | Msa1186440:CDS | 25.0% |
| ! | TAGACTAATCAAATAACTAG+TGG | + | chr8_1:24733828-24733847 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8_1:24733897-24733916 | Msa1186440:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr8_1:24734492-24734511 | None:intergenic | 25.0% |
| !! | GGAAATTTTATACCATAACA+CGG | - | chr8_1:24734791-24734810 | Msa1186440:intron | 25.0% |
| ! | ATATTAGATTAACCGTGTTA+TGG | + | chr8_1:24734806-24734825 | None:intergenic | 25.0% |
| ! | CTGATACAATTACAAACAAT+TGG | + | chr8_1:24734955-24734974 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | - | chr8_1:24734960-24734979 | Msa1186440:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | + | chr8_1:24735048-24735067 | None:intergenic | 25.0% |
| ! | AGAGAATCAGTTTCATGTTT+TGG | - | chr8_1:24733275-24733294 | Msa1186440:CDS | 30.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8_1:24733316-24733335 | Msa1186440:CDS | 30.0% |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8_1:24733539-24733558 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8_1:24733722-24733741 | Msa1186440:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8_1:24733723-24733742 | Msa1186440:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8_1:24733757-24733776 | Msa1186440:intron | 30.0% | |
| CAAAAGTGAGGAAAAAATTG+TGG | + | chr8_1:24733873-24733892 | None:intergenic | 30.0% | |
| GCATTCAAATTTCAAAAGTG+AGG | + | chr8_1:24733885-24733904 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAATCAAG+AGG | + | chr8_1:24734258-24734277 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr8_1:24734376-24734395 | Msa1186440:intron | 30.0% |
| ACTCTACATACCAAACAAAA+AGG | + | chr8_1:24734389-24734408 | None:intergenic | 30.0% | |
| ATCACTTCTCACAATTGATT+TGG | - | chr8_1:24734538-24734557 | Msa1186440:intron | 30.0% | |
| ATGCTTTCCATGAACAATTT+CGG | + | chr8_1:24734599-24734618 | None:intergenic | 30.0% | |
| ATAAAAGTTCATTGATCTGC+AGG | - | chr8_1:24734694-24734713 | Msa1186440:CDS | 30.0% | |
| TTTACATCTGATAGTTGAAC+TGG | + | chr8_1:24735015-24735034 | None:intergenic | 30.0% | |
| AACAACCTATCAACATCAAA+AGG | - | chr8_1:24735082-24735101 | Msa1186440:CDS | 30.0% | |
| ! | AGAGAATCAGTTTCATGTTT+TGG | - | chr8_1:24733275-24733294 | Msa1186440:CDS | 30.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8_1:24733316-24733335 | Msa1186440:CDS | 30.0% |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8_1:24733539-24733558 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8_1:24733722-24733741 | Msa1186440:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8_1:24733723-24733742 | Msa1186440:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8_1:24733757-24733776 | Msa1186440:intron | 30.0% | |
| CAAAAGTGAGGAAAAAATTG+TGG | + | chr8_1:24733873-24733892 | None:intergenic | 30.0% | |
| GCATTCAAATTTCAAAAGTG+AGG | + | chr8_1:24733885-24733904 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAATCAAG+AGG | + | chr8_1:24734258-24734277 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr8_1:24734376-24734395 | Msa1186440:intron | 30.0% |
| ACTCTACATACCAAACAAAA+AGG | + | chr8_1:24734389-24734408 | None:intergenic | 30.0% | |
| ATCACTTCTCACAATTGATT+TGG | - | chr8_1:24734538-24734557 | Msa1186440:intron | 30.0% | |
| ATGCTTTCCATGAACAATTT+CGG | + | chr8_1:24734599-24734618 | None:intergenic | 30.0% | |
| ATAAAAGTTCATTGATCTGC+AGG | - | chr8_1:24734694-24734713 | Msa1186440:CDS | 30.0% | |
| TTTACATCTGATAGTTGAAC+TGG | + | chr8_1:24735015-24735034 | None:intergenic | 30.0% | |
| AACAACCTATCAACATCAAA+AGG | - | chr8_1:24735082-24735101 | Msa1186440:CDS | 30.0% | |
| AAATTTCAAGGCCTTACTAG+CGG | + | chr8_1:24733527-24733546 | None:intergenic | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8_1:24733529-24733548 | Msa1186440:intron | 35.0% | |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8_1:24733540-24733559 | Msa1186440:intron | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8_1:24733761-24733780 | Msa1186440:intron | 35.0% | |
| ! | GGAGATCCCTTTATGATTTT+CGG | - | chr8_1:24734157-24734176 | Msa1186440:intron | 35.0% |
| TTGGGACCGAAAATCATAAA+GGG | + | chr8_1:24734166-24734185 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr8_1:24734302-24734321 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCTCA+AGG | - | chr8_1:24734324-24734343 | Msa1186440:intron | 35.0% | |
| TCTCAATCCGAAATTGTTCA+TGG | - | chr8_1:24734589-24734608 | Msa1186440:intron | 35.0% | |
| ! | AGGCATGTCTTTGAAAGATT+TGG | + | chr8_1:24734723-24734742 | None:intergenic | 35.0% |
| ! | ATGTTCCATCTAGGATAAAC+AGG | - | chr8_1:24734765-24734784 | Msa1186440:intron | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | - | chr8_1:24734966-24734985 | Msa1186440:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | - | chr8_1:24734967-24734986 | Msa1186440:intron | 35.0% | |
| ACCTATCAACATCAAAAGGA+AGG | - | chr8_1:24735086-24735105 | Msa1186440:CDS | 35.0% | |
| ! | ACCTTCCTTTTGATGTTGAT+AGG | + | chr8_1:24735090-24735109 | None:intergenic | 35.0% |
| CAACATCAAAAGGAAGGTTA+TGG | - | chr8_1:24735092-24735111 | Msa1186440:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | - | chr8_1:24735121-24735140 | Msa1186440:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | + | chr8_1:24735132-24735151 | None:intergenic | 35.0% |
| AAATTTCAAGGCCTTACTAG+CGG | + | chr8_1:24733527-24733546 | None:intergenic | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8_1:24733529-24733548 | Msa1186440:intron | 35.0% | |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8_1:24733540-24733559 | Msa1186440:intron | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8_1:24733761-24733780 | Msa1186440:intron | 35.0% | |
| ! | GGAGATCCCTTTATGATTTT+CGG | - | chr8_1:24734157-24734176 | Msa1186440:intron | 35.0% |
| TTGGGACCGAAAATCATAAA+GGG | + | chr8_1:24734166-24734185 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr8_1:24734302-24734321 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCTCA+AGG | - | chr8_1:24734324-24734343 | Msa1186440:intron | 35.0% | |
| TCTCAATCCGAAATTGTTCA+TGG | - | chr8_1:24734589-24734608 | Msa1186440:intron | 35.0% | |
| ! | AGGCATGTCTTTGAAAGATT+TGG | + | chr8_1:24734723-24734742 | None:intergenic | 35.0% |
| ! | ATGTTCCATCTAGGATAAAC+AGG | - | chr8_1:24734765-24734784 | Msa1186440:intron | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | - | chr8_1:24734966-24734985 | Msa1186440:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | - | chr8_1:24734967-24734986 | Msa1186440:intron | 35.0% | |
| ACCTATCAACATCAAAAGGA+AGG | - | chr8_1:24735086-24735105 | Msa1186440:CDS | 35.0% | |
| ! | ACCTTCCTTTTGATGTTGAT+AGG | + | chr8_1:24735090-24735109 | None:intergenic | 35.0% |
| CAACATCAAAAGGAAGGTTA+TGG | - | chr8_1:24735092-24735111 | Msa1186440:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | - | chr8_1:24735121-24735140 | Msa1186440:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | + | chr8_1:24735132-24735151 | None:intergenic | 35.0% |
| ! | TACAGTTGATTCCGCTAGTA+AGG | - | chr8_1:24733513-24733532 | Msa1186440:intron | 40.0% |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8_1:24733551-24733570 | Msa1186440:intron | 40.0% | |
| CTTGGGACCGAAAATCATAA+AGG | + | chr8_1:24734167-24734186 | None:intergenic | 40.0% | |
| CGCTGCAATGTAATTCTAAG+AGG | - | chr8_1:24734349-24734368 | Msa1186440:intron | 40.0% | |
| TCTGAGGACATTATCACAAC+AGG | + | chr8_1:24734743-24734762 | None:intergenic | 40.0% | |
| CCTTACCTGTTTATCCTAGA+TGG | + | chr8_1:24734773-24734792 | None:intergenic | 40.0% | |
| ! | CCATCTAGGATAAACAGGTA+AGG | - | chr8_1:24734770-24734789 | Msa1186440:intron | 40.0% |
| GTATCAGATGTTTGGAAGAG+GGG | - | chr8_1:24734968-24734987 | Msa1186440:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | - | chr8_1:24734969-24734988 | Msa1186440:intron | 40.0% | |
| ! | CTGATAGTTGAACTGGTTTC+AGG | + | chr8_1:24735008-24735027 | None:intergenic | 40.0% |
| ! | TACAGTTGATTCCGCTAGTA+AGG | - | chr8_1:24733513-24733532 | Msa1186440:intron | 40.0% |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8_1:24733551-24733570 | Msa1186440:intron | 40.0% | |
| CTTGGGACCGAAAATCATAA+AGG | + | chr8_1:24734167-24734186 | None:intergenic | 40.0% | |
| CGCTGCAATGTAATTCTAAG+AGG | - | chr8_1:24734349-24734368 | Msa1186440:intron | 40.0% | |
| TCTGAGGACATTATCACAAC+AGG | + | chr8_1:24734743-24734762 | None:intergenic | 40.0% | |
| CCTTACCTGTTTATCCTAGA+TGG | + | chr8_1:24734773-24734792 | None:intergenic | 40.0% | |
| ! | CCATCTAGGATAAACAGGTA+AGG | - | chr8_1:24734770-24734789 | Msa1186440:intron | 40.0% |
| GTATCAGATGTTTGGAAGAG+GGG | - | chr8_1:24734968-24734987 | Msa1186440:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | - | chr8_1:24734969-24734988 | Msa1186440:intron | 40.0% | |
| ! | CTGATAGTTGAACTGGTTTC+AGG | + | chr8_1:24735008-24735027 | None:intergenic | 40.0% |
| TATTGTATGCCAGGGATGAC+TGG | - | chr8_1:24733731-24733750 | Msa1186440:intron | 45.0% | |
| AAATTTGTCCGGTCTCGACT+TGG | - | chr8_1:24734081-24734100 | Msa1186440:intron | 45.0% | |
| AATTTGTCCGGTCTCGACTT+GGG | - | chr8_1:24734082-24734101 | Msa1186440:intron | 45.0% | |
| CCTAGATGGAACATTCTCTG+AGG | + | chr8_1:24734759-24734778 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | - | chr8_1:24734756-24734775 | Msa1186440:intron | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | - | chr8_1:24733731-24733750 | Msa1186440:intron | 45.0% | |
| AAATTTGTCCGGTCTCGACT+TGG | - | chr8_1:24734081-24734100 | Msa1186440:intron | 45.0% | |
| AATTTGTCCGGTCTCGACTT+GGG | - | chr8_1:24734082-24734101 | Msa1186440:intron | 45.0% | |
| CCTAGATGGAACATTCTCTG+AGG | + | chr8_1:24734759-24734778 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | - | chr8_1:24734756-24734775 | Msa1186440:intron | 45.0% | |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr8_1:24734135-24734154 | Msa1186440:intron | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr8_1:24734135-24734154 | Msa1186440:intron | 5.0% |
| AGATCATAGCCAGTCATCCC+TGG | + | chr8_1:24733743-24733762 | None:intergenic | 50.0% | |
| AGATCATAGCCAGTCATCCC+TGG | + | chr8_1:24733743-24733762 | None:intergenic | 50.0% | |
| ACATTGGCCCAAGTCGAGAC+CGG | + | chr8_1:24734092-24734111 | None:intergenic | 55.0% | |
| ACATTGGCCCAAGTCGAGAC+CGG | + | chr8_1:24734092-24734111 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24733259 | 24735158 | 24733259 | ID=Msa1186440;Name=Msa1186440 |
| chr8_1 | mRNA | 24733259 | 24735158 | 24733259 | ID=Msa1186440-mRNA-1;Parent=Msa1186440;Name=Msa1186440-mRNA-1;_AED=0.15;_eAED=0.15;_QI=2|0|0|1|1|0.8|5|0|179 |
| chr8_1 | exon | 24735054 | 24735158 | 24735054 | ID=Msa1186440-mRNA-1:exon:8959;Parent=Msa1186440-mRNA-1 |
| chr8_1 | exon | 24734808 | 24734908 | 24734808 | ID=Msa1186440-mRNA-1:exon:8958;Parent=Msa1186440-mRNA-1 |
| chr8_1 | exon | 24734639 | 24734716 | 24734639 | ID=Msa1186440-mRNA-1:exon:8957;Parent=Msa1186440-mRNA-1 |
| chr8_1 | exon | 24733631 | 24733701 | 24733631 | ID=Msa1186440-mRNA-1:exon:8956;Parent=Msa1186440-mRNA-1 |
| chr8_1 | exon | 24733259 | 24733442 | 24733259 | ID=Msa1186440-mRNA-1:exon:8955;Parent=Msa1186440-mRNA-1 |
| chr8_1 | five_prime_UTR | 24735157 | 24735158 | 24735157 | ID=Msa1186440-mRNA-1:five_prime_utr;Parent=Msa1186440-mRNA-1 |
| chr8_1 | CDS | 24735054 | 24735156 | 24735054 | ID=Msa1186440-mRNA-1:cds;Parent=Msa1186440-mRNA-1 |
| chr8_1 | CDS | 24734808 | 24734908 | 24734808 | ID=Msa1186440-mRNA-1:cds;Parent=Msa1186440-mRNA-1 |
| chr8_1 | CDS | 24734639 | 24734716 | 24734639 | ID=Msa1186440-mRNA-1:cds;Parent=Msa1186440-mRNA-1 |
| chr8_1 | CDS | 24733631 | 24733701 | 24733631 | ID=Msa1186440-mRNA-1:cds;Parent=Msa1186440-mRNA-1 |
| chr8_1 | CDS | 24733259 | 24733442 | 24733259 | ID=Msa1186440-mRNA-1:cds;Parent=Msa1186440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
