AlfalfaGEDB | Msa1187250

M. sativa cultivar zhongmu-4 / Msa1187250

KEGG: K21752
GO: -
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1187250	XP_003628014.1	97.705	305	7	0	1	305	1	305	0.0	616

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1187250	sp\|Q2YDP3\|NC2A_BOVIN	45.185	135	71	1	2	136	5	136	2.09e-31	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1187250	TF	NF-YC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1187250	MtrunA17_Chr8g0354151	97.705	305	7	0	1	305	1	305	0.0	616
Msa1187250	MtrunA17_Chr3g0081161	68.475	295	77	5	1	294	1	280	2.20e-126	362
Msa1187250	MtrunA17_Chr5g0441241	43.056	288	137	7	18	293	1	273	7.18e-53	174
Msa1187250	MtrunA17_Chr2g0288481	38.202	89	52	1	1	86	75	163	7.68e-12	64.3
Msa1187250	MtrunA17_Chr3g0132191	37.975	79	49	0	8	86	55	133	1.10e-11	63.2
Msa1187250	MtrunA17_Chr1g0191681	37.179	78	49	0	9	86	102	179	1.31e-11	63.5
Msa1187250	MtrunA17_Chr7g0272991	37.179	78	49	0	9	86	102	179	1.54e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1187250	AT3G12480.1	48.197	305	124	7	1	294	1	282	3.08e-71	222
Msa1187250	AT5G19490.1	62.319	138	43	3	1	137	1	130	4.54e-51	169
Msa1187250	AT1G54830.2	38.462	78	48	0	9	86	71	148	5.39e-12	64.7
Msa1187250	AT1G54830.3	38.462	78	48	0	9	86	71	148	5.39e-12	64.7
Msa1187250	AT1G54830.1	38.462	78	48	0	9	86	71	148	5.39e-12	64.7
Msa1187250	AT5G63470.2	37.975	79	49	0	8	86	78	156	1.19e-11	64.3
Msa1187250	AT5G63470.1	37.975	79	49	0	8	86	78	156	1.19e-11	64.3
Msa1187250	AT3G48590.1	37.975	79	49	0	8	86	65	143	1.28e-11	63.9
Msa1187250	AT1G08970.3	38.462	78	48	0	9	86	81	158	1.38e-11	63.5
Msa1187250	AT1G08970.4	38.462	78	48	0	9	86	81	158	1.38e-11	63.5

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Find 116 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAATTTACTACATA+TGG	0.332756	8_1:+26722879	None:intergenic
AAATACTACAGATACAAATG+TGG	0.667589	8_1:-26723518	Msa1187250:CDS
AAATTGTAGTCTTCGGGAGA+GGG	0.543479	8_1:-26723144	Msa1187250:three_prime_UTR
AACCGTGCGACGCACGGGTT+AGG	0.498223	8_1:-26726716	Msa1187250:five_prime_UTR
AAGGGTAAATTGTAGTCTTC+GGG	0.401128	8_1:-26723150	Msa1187250:exon
AAGGTTCCTGACTACGGCCA+TGG	0.610732	8_1:-26724351	Msa1187250:CDS
AATGTCCCATTTGTTTAATC+TGG	0.276795	8_1:-26722997	Msa1187250:intron
ACAAACCAGATTAAACAAAT+GGG	0.526537	8_1:+26722992	None:intergenic
ACAAATGTGGCTATACTTGA+TGG	0.465433	8_1:-26723505	Msa1187250:CDS
ACAGTGATGAAGAAGCTAAG+AGG	0.558884	8_1:-26724162	Msa1187250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGGTTAAAACTACTTCATT+TGG	+	chr8_1:26722843-26722862	None:intergenic	30.0%
TACCTTTGGATCTGAAAAAT+GGG	-	chr8_1:26723040-26723059	Msa1187250:three_prime_UTR	30.0%
AGCTTGATTAATGAAGTTGA+TGG	-	chr8_1:26723427-26723446	Msa1187250:CDS	30.0%
TTAGCTGCTTAGCTTAATTA+TGG	-	chr8_1:26723495-26723514	Msa1187250:CDS	30.0%
TGAGCCTAAAAATTTCATGT+TGG	-	chr8_1:26723841-26723860	Msa1187250:intron	30.0%
TAAGCCAAACAGCTAAAAAA+AGG	+	chr8_1:26723882-26723901	None:intergenic	30.0%
AAATCCAAAATTGGTCCTAA+GGG	+	chr8_1:26724039-26724058	None:intergenic	30.0%
TCATATAAGCATCATATCTG+TGG	+	chr8_1:26724116-26724135	None:intergenic	30.0%
TGAAATAACTCTTCAAAGAG+GGG	-	chr8_1:26724498-26724517	Msa1187250:intron	30.0%
TCACAAATGCAATGAATTCA+TGG	+	chr8_1:26724530-26724549	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	26722793	26726802	26722793	ID=Msa1187250;Name=Msa1187250
chr8_1	mRNA	26722793	26726802	26722793	ID=Msa1187250-mRNA-1;Parent=Msa1187250;Name=Msa1187250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=388\|1\|1\|1\|0.83\|0.71\|7\|352\|305
chr8_1	exon	26722793	26722977	26722793	ID=Msa1187250-mRNA-1:exon:9413;Parent=Msa1187250-mRNA-1
chr8_1	exon	26722998	26723692	26722998	ID=Msa1187250-mRNA-1:exon:9412;Parent=Msa1187250-mRNA-1
chr8_1	exon	26724153	26724210	26724153	ID=Msa1187250-mRNA-1:exon:9411;Parent=Msa1187250-mRNA-1
chr8_1	exon	26724297	26724428	26724297	ID=Msa1187250-mRNA-1:exon:9410;Parent=Msa1187250-mRNA-1
chr8_1	exon	26725050	26725143	26725050	ID=Msa1187250-mRNA-1:exon:9409;Parent=Msa1187250-mRNA-1
chr8_1	exon	26725233	26725305	26725233	ID=Msa1187250-mRNA-1:exon:9408;Parent=Msa1187250-mRNA-1
chr8_1	exon	26726382	26726802	26726382	ID=Msa1187250-mRNA-1:exon:9407;Parent=Msa1187250-mRNA-1
chr8_1	five_prime_UTR	26726415	26726802	26726415	ID=Msa1187250-mRNA-1:five_prime_utr;Parent=Msa1187250-mRNA-1
chr8_1	CDS	26726382	26726414	26726382	ID=Msa1187250-mRNA-1:cds;Parent=Msa1187250-mRNA-1
chr8_1	CDS	26725233	26725305	26725233	ID=Msa1187250-mRNA-1:cds;Parent=Msa1187250-mRNA-1
chr8_1	CDS	26725050	26725143	26725050	ID=Msa1187250-mRNA-1:cds;Parent=Msa1187250-mRNA-1
chr8_1	CDS	26724297	26724428	26724297	ID=Msa1187250-mRNA-1:cds;Parent=Msa1187250-mRNA-1
chr8_1	CDS	26724153	26724210	26724153	ID=Msa1187250-mRNA-1:cds;Parent=Msa1187250-mRNA-1
chr8_1	CDS	26723165	26723692	26723165	ID=Msa1187250-mRNA-1:cds;Parent=Msa1187250-mRNA-1
chr8_1	three_prime_UTR	26722998	26723164	26722998	ID=Msa1187250-mRNA-1:three_prime_utr;Parent=Msa1187250-mRNA-1
chr8_1	three_prime_UTR	26722793	26722977	26722793	ID=Msa1187250-mRNA-1:three_prime_utr;Parent=Msa1187250-mRNA-1

Gene Sequence

>Msa1187250

ATGAAGAAGAAGCTCGATACGCGTTTCCCTGCTGCTCGGATAAAGAAAATAATGCAAGCTGATGAAGATGTTGGAAAGATAGCATTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTGGAGCTATTTTTGCAAGACCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGGGCGAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTATTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCATGGCCATACTGATGCTGGTGGTGCTGATGATCAGACCATTCCAAAAAGAAGGAAAGCTGCAGGTGATGATGGTAATGACAGTGATGAAGAAGCTAAGAGGGGCAAGATGCTGGAGTTGGGCCACACTAGCCCTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGAAGAGGACGAGGTCGAGGACGAGCTATTCAAAAAGAGGGACATCATCAGGAGACTGAGTCTGAGCCTTGTCCTTCTGTTCAGCAAGTTAGCCAAAATACTACAGATACAAATGTGGCTATACTTGATGGCACAGAGTCAAACGAGTTACCAAAGAATAATGTTGTTGTTCTTCCTGCTGATAACTCTGACTCACTCCTTAATATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGGCTAGCACAGTTTCTAATCTCACAGCCGCTAATCCCGAAGCCGCTAATACTGAAGCCGCTAATCCCCCCGTGTCTGAACCTCCTCCAACAGACAGCAGTCATCATGAAGAAATTCCGGGCTGGTCCCTTTCTGAGGTGGACAAGATGGCCATTGATTCGATGCAGCTTGCCCAGCTTGGTACGCGGATGGATGAGGATGATGAAGATTATGACGAGGAAGGGTAA

Protein sequence

>Msa1187250

MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGGADDQTIPKRRKAAGDDGNDSDEEAKRGKMLELGHTSPTGRGRGRGRGRGRGRGRGRAIQKEGHHQETESEPCPSVQQVSQNTTDTNVAILDGTESNELPKNNVVVLPADNSDSLLNIDLNANMNENDDKKASTVSNLTAANPEAANTEAANPPVSEPPPTDSSHHEEIPGWSLSEVDKMAIDSMQLAQLGTRMDEDDEDYDEEG*