Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1187830 | XP_004511180.1 | 36.970 | 165 | 87 | 5 | 524 | 672 | 282 | 445 | 1.86e-17 | 99.0 |
| Msa1187830 | XP_004511180.1 | 50.608 | 411 | 179 | 10 | 1 | 404 | 1 | 394 | 6.86e-114 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1187830 | sp|O24606|EIN3_ARATH | 46.906 | 307 | 146 | 5 | 12 | 309 | 33 | 331 | 2.58e-85 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1187830 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1187830 | MtrunA17_Chr5g0440591 | 46.562 | 320 | 148 | 5 | 5 | 312 | 26 | 334 | 9.99e-89 | 289 |
| Msa1187830 | MtrunA17_Chr3g0118361 | 45.483 | 321 | 149 | 7 | 6 | 314 | 30 | 336 | 1.93e-82 | 273 |
| Msa1187830 | MtrunA17_Chr2g0329151 | 42.378 | 328 | 149 | 7 | 21 | 324 | 31 | 342 | 1.20e-73 | 249 |
| Msa1187830 | MtrunA17_Chr3g0124291 | 43.462 | 260 | 134 | 4 | 26 | 278 | 30 | 283 | 1.33e-69 | 233 |
| Msa1187830 | MtrunA17_Chr8g0382561 | 46.491 | 228 | 116 | 4 | 52 | 278 | 52 | 274 | 7.29e-66 | 223 |
| Msa1187830 | MtrunA17_Chr6g0476301 | 46.058 | 241 | 121 | 4 | 73 | 313 | 1 | 232 | 3.84e-64 | 217 |
| Msa1187830 | MtrunA17_Chr3g0080401 | 42.692 | 260 | 133 | 6 | 73 | 327 | 1 | 249 | 4.58e-64 | 215 |
| Msa1187830 | MtrunA17_Chr6g0473191 | 45.532 | 235 | 121 | 3 | 73 | 307 | 1 | 228 | 1.81e-63 | 212 |
| Msa1187830 | MtrunA17_Chr6g0476291 | 45.532 | 235 | 121 | 3 | 73 | 307 | 1 | 228 | 1.25e-62 | 209 |
| Msa1187830 | MtrunA17_Chr7g0260281 | 74.167 | 120 | 31 | 0 | 62 | 181 | 1 | 120 | 1.29e-49 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1187830 | AT3G20770.1 | 46.906 | 307 | 146 | 5 | 12 | 309 | 33 | 331 | 2.63e-86 | 283 |
| Msa1187830 | AT2G27050.1 | 46.179 | 301 | 143 | 6 | 21 | 309 | 42 | 335 | 3.55e-82 | 271 |
| Msa1187830 | AT1G73730.2 | 42.320 | 319 | 150 | 7 | 21 | 319 | 19 | 323 | 4.07e-71 | 241 |
| Msa1187830 | AT1G73730.1 | 42.320 | 319 | 150 | 7 | 21 | 319 | 31 | 335 | 4.53e-71 | 241 |
| Msa1187830 | AT5G10120.1 | 48.000 | 225 | 113 | 2 | 55 | 279 | 59 | 279 | 2.85e-69 | 234 |
| Msa1187830 | AT5G65100.1 | 47.111 | 225 | 112 | 3 | 54 | 277 | 88 | 306 | 1.62e-65 | 226 |
| Msa1187830 | AT5G21120.2 | 44.697 | 264 | 127 | 6 | 55 | 308 | 94 | 348 | 5.37e-65 | 224 |
| Msa1187830 | AT5G21120.3 | 44.697 | 264 | 127 | 6 | 55 | 308 | 87 | 341 | 5.57e-65 | 224 |
| Msa1187830 | AT5G21120.1 | 44.697 | 264 | 127 | 6 | 55 | 308 | 87 | 341 | 5.57e-65 | 224 |
Find 162 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCTTGTGCACTTTC+TGG | 0.076552 | 8_1:+27752761 | None:intergenic |
| TCTACCTCAATCTGCTAATT+TGG | 0.168309 | 8_1:-27750121 | Msa1187830:CDS |
| CCTAGCTGGGTTTCATTCTT+TGG | 0.171554 | 8_1:-27749977 | Msa1187830:CDS |
| TTGCTTCCATTTGCTGAAAA+TGG | 0.183787 | 8_1:+27750297 | None:intergenic |
| GGAAACAAATCCAAACATTT+TGG | 0.194985 | 8_1:+27750183 | None:intergenic |
| CGGTTCCATGGACACTTTCT+TGG | 0.205051 | 8_1:+27750640 | None:intergenic |
| CATTGAATTTGAATATTTCT+TGG | 0.208852 | 8_1:+27752384 | None:intergenic |
| AACAGGTTTCCTTTGGAAAA+AGG | 0.215179 | 8_1:-27751389 | Msa1187830:intron |
| GGACTTCATTATAATGTTAA+TGG | 0.231962 | 8_1:-27752413 | Msa1187830:CDS |
| GAATATAAGCATGGGTATTA+TGG | 0.267844 | 8_1:-27752699 | Msa1187830:CDS |
| ACCATGTTGCTTTCATTTGC+TGG | 0.269080 | 8_1:+27750429 | None:intergenic |
| ACCATGTTGCTTTCATTTGC+TGG | 0.269080 | 8_1:+27750567 | None:intergenic |
| GGCCTAATAACCTTGTTTCT+TGG | 0.269096 | 8_1:+27750078 | None:intergenic |
| CTCATATATAAAATGGAAAT+TGG | 0.271711 | 8_1:-27752806 | None:intergenic |
| CAACAATGAAGAAAGAAATT+TGG | 0.285533 | 8_1:-27752735 | Msa1187830:CDS |
| TGTACGTACCTTCTTTGATT+TGG | 0.287101 | 8_1:+27752269 | None:intergenic |
| TCCACCTCATTGTGTTGATT+TGG | 0.292463 | 8_1:-27750952 | Msa1187830:CDS |
| CAATAACCAACCTCAACATT+TGG | 0.307351 | 8_1:-27750400 | Msa1187830:CDS |
| CAATAACCAACCTCAACATT+TGG | 0.307351 | 8_1:-27750538 | Msa1187830:CDS |
| CATTTGGATTTGTTTCCATT+TGG | 0.311773 | 8_1:-27750246 | Msa1187830:CDS |
| TGGTTCCATGGACACTTTCT+TGG | 0.316457 | 8_1:+27750364 | None:intergenic |
| TGGTTCCATGGACACTTTCT+TGG | 0.316457 | 8_1:+27750502 | None:intergenic |
| CAATAACCAACCAAAATGTT+TGG | 0.318257 | 8_1:-27750193 | Msa1187830:CDS |
| AGATCATGAGGTTTCCTATA+GGG | 0.321543 | 8_1:+27751287 | None:intergenic |
| TGGTTCCATGAACACTTTCT+TGG | 0.324707 | 8_1:+27750778 | None:intergenic |
| TTGCTTTCATTTGCTGGAAA+TGG | 0.328902 | 8_1:+27750435 | None:intergenic |
| TTGCTTTCATTTGCTGGAAA+TGG | 0.328902 | 8_1:+27750573 | None:intergenic |
| TTAATAACCATGCTGCTTCC+AGG | 0.333225 | 8_1:+27750837 | None:intergenic |
| AGAGCTAGGTACGTGGTTAC+TGG | 0.338068 | 8_1:-27750042 | Msa1187830:CDS |
| TTCTGTAAGGACAATTCATT+TGG | 0.339985 | 8_1:+27749938 | None:intergenic |
| CAATAATCAACGTCAACATT+TGG | 0.341761 | 8_1:-27750262 | Msa1187830:CDS |
| ACCATGGTGCTTCCATTTGA+TGG | 0.342571 | 8_1:+27750705 | None:intergenic |
| CCAACCTCAACATTTGGATT+TGG | 0.342720 | 8_1:-27750394 | Msa1187830:CDS |
| CCAACCTCAACATTTGGATT+TGG | 0.342720 | 8_1:-27750532 | Msa1187830:CDS |
| TATGATGTTGATGGAAATAA+TGG | 0.343859 | 8_1:-27751011 | Msa1187830:CDS |
| CCAACCTCAATGTAAGGATT+TGG | 0.344423 | 8_1:-27750670 | Msa1187830:CDS |
| CCAACCTCAATGTATGGATT+TGG | 0.345365 | 8_1:-27750808 | Msa1187830:CDS |
| CGTGCTGATGGATTTGTATA+TGG | 0.353695 | 8_1:-27752554 | Msa1187830:CDS |
| CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8_1:-27750322 | Msa1187830:CDS |
| CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8_1:-27750460 | Msa1187830:CDS |
| CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8_1:-27750598 | Msa1187830:CDS |
| CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8_1:-27750736 | Msa1187830:CDS |
| TGAAGAATGGTGGCCGCTAT+TGG | 0.355779 | 8_1:-27751336 | Msa1187830:CDS |
| GTGCTCCTATTGTTGTGTTT+AGG | 0.361123 | 8_1:+27752324 | None:intergenic |
| TCTTGAACATTGTCTTTGAA+TGG | 0.363036 | 8_1:+27750927 | None:intergenic |
| CTAGCTCTCCTGGTGGCAAT+TGG | 0.365390 | 8_1:+27750057 | None:intergenic |
| CCAAATGGAAGCAATAATAA+TGG | 0.368258 | 8_1:-27751065 | Msa1187830:CDS |
| CTCCAAGAAACAAGGTTATT+AGG | 0.373520 | 8_1:-27750080 | Msa1187830:CDS |
| CCATTCCAAGAAAGTGTTCA+TGG | 0.375962 | 8_1:-27750783 | Msa1187830:CDS |
| CCTTACAGAAATAACTCTTC+TGG | 0.387874 | 8_1:-27749925 | Msa1187830:CDS |
| GAACTCCTAAACACAACAAT+AGG | 0.388891 | 8_1:-27752329 | Msa1187830:CDS |
| CATTATAATGAAGTCCTTGT+TGG | 0.390991 | 8_1:+27752420 | None:intergenic |
| TTGGTTCCATTTCCATCAAA+TGG | 0.392196 | 8_1:-27750717 | Msa1187830:CDS |
| GTGCTTCCATTTGATGGAAA+TGG | 0.394257 | 8_1:+27750711 | None:intergenic |
| TGTTTGGATTTGTTTCCATC+TGG | 0.396974 | 8_1:-27750177 | Msa1187830:CDS |
| CCAGAAGAGTTATTTCTGTA+AGG | 0.399499 | 8_1:+27749925 | None:intergenic |
| TTCCTATAGGGTGGAGGACC+TGG | 0.400683 | 8_1:+27751299 | None:intergenic |
| CTATCATGTTCATTGTTGCC+TGG | 0.400918 | 8_1:+27752644 | None:intergenic |
| CCATTATTATTGCTTCCATT+TGG | 0.403275 | 8_1:+27751065 | None:intergenic |
| TCATTATAATGTTAATGGTT+CGG | 0.414528 | 8_1:-27752408 | Msa1187830:CDS |
| CCTTATCATAGCCACCTAGC+TGG | 0.416024 | 8_1:-27749991 | Msa1187830:CDS |
| GAAGAATGGTGGCCGCTATT+GGG | 0.417869 | 8_1:-27751335 | Msa1187830:CDS |
| ACTCATAATTATGATGTTGA+TGG | 0.419818 | 8_1:-27751020 | Msa1187830:CDS |
| CCCCTTGGCCACCATGGTGG+TGG | 0.420832 | 8_1:+27751362 | None:intergenic |
| TAGATCATGAGGTTTCCTAT+AGG | 0.421514 | 8_1:+27751286 | None:intergenic |
| CAATAACCAACGTCAATGTA+TGG | 0.424652 | 8_1:-27750328 | Msa1187830:CDS |
| CAATAACCAACGTCAATGTA+TGG | 0.424652 | 8_1:-27750466 | Msa1187830:CDS |
| CAATAACCAACGTCAATGTA+TGG | 0.424652 | 8_1:-27750604 | Msa1187830:CDS |
| TAATAACCAACGTCAATGTA+TGG | 0.431013 | 8_1:-27750742 | Msa1187830:CDS |
| TTGTCATGTCTTATGACATT+TGG | 0.434470 | 8_1:-27752299 | Msa1187830:CDS |
| AAATAACCAACCTCAATGTA+TGG | 0.435118 | 8_1:-27750814 | Msa1187830:CDS |
| CCATGGACACTTTCTTGGAA+TGG | 0.437818 | 8_1:+27750369 | None:intergenic |
| CCATGGACACTTTCTTGGAA+TGG | 0.437818 | 8_1:+27750507 | None:intergenic |
| CCATGGACACTTTCTTGGAA+TGG | 0.437818 | 8_1:+27750645 | None:intergenic |
| CCATGAACACTTTCTTGGAA+TGG | 0.437818 | 8_1:+27750783 | None:intergenic |
| GTCGATCTTGGTCGTGCTGA+TGG | 0.437951 | 8_1:-27752566 | Msa1187830:CDS |
| CCAGGAACACTTGCTTGAAA+AGG | 0.440379 | 8_1:+27750855 | None:intergenic |
| TTCCACCACCATGGTGGCCA+AGG | 0.449334 | 8_1:-27751364 | Msa1187830:CDS |
| GGCCAGGTAGTTCAAGTAAT+GGG | 0.456156 | 8_1:-27750986 | Msa1187830:CDS |
| CCAGCTAGGTGGCTATGATA+AGG | 0.457593 | 8_1:+27749991 | None:intergenic |
| CACCATTCTTCATCTCCCCT+TGG | 0.458151 | 8_1:+27751347 | None:intergenic |
| CTGAAAATCTTCAACATTGG+TGG | 0.458620 | 8_1:-27752493 | Msa1187830:CDS |
| AGCTGGGTTTCATTCTTTGG+AGG | 0.464728 | 8_1:-27749974 | Msa1187830:CDS |
| ATGCACAAGTTGGTCGATCT+TGG | 0.465855 | 8_1:-27752578 | Msa1187830:CDS |
| AATAACAACAGCGAAGTTAG+TGG | 0.472215 | 8_1:+27751139 | None:intergenic |
| TTATTATTGCTTCCATTTGG+TGG | 0.472616 | 8_1:+27751068 | None:intergenic |
| ATCCAGGTCCTCCACCCTAT+AGG | 0.477367 | 8_1:-27751301 | Msa1187830:CDS |
| AAAGTGAAGTTTGATAGAAA+TGG | 0.479002 | 8_1:-27752464 | Msa1187830:CDS |
| GTTGTAATCCAAATCAAAGA+AGG | 0.482832 | 8_1:-27752277 | Msa1187830:intron |
| TGCCCATTACTTGAACTACC+TGG | 0.484393 | 8_1:+27750984 | None:intergenic |
| CAATAGCCAACCTCAATGTA+AGG | 0.484604 | 8_1:-27750676 | Msa1187830:CDS |
| CAGCTAGGTGGCTATGATAA+GGG | 0.488469 | 8_1:+27749992 | None:intergenic |
| TCAAATGAGTTACCACCAAA+TGG | 0.488806 | 8_1:-27751080 | Msa1187830:CDS |
| CTTATCATAGCCACCTAGCT+GGG | 0.489975 | 8_1:-27749990 | Msa1187830:CDS |
| TCATCTCCCCTTGGCCACCA+TGG | 0.490729 | 8_1:+27751356 | None:intergenic |
| GGAACCAAATTAGCAGATTG+AGG | 0.500479 | 8_1:+27750117 | None:intergenic |
| GATGGAAATAATGGAGGGCC+AGG | 0.505862 | 8_1:-27751002 | Msa1187830:CDS |
| AGATAAAATGTCTGCACAAG+AGG | 0.509456 | 8_1:-27751162 | Msa1187830:CDS |
| TGGTACTTCACTATTGCAGC+AGG | 0.513940 | 8_1:+27752440 | None:intergenic |
| TTGGGTTATCGAAAGGATCC+AGG | 0.525393 | 8_1:-27751317 | Msa1187830:CDS |
| CCAAATCCTTACATTGAGGT+TGG | 0.527623 | 8_1:+27750670 | None:intergenic |
| CCAAATCCATACATTGAGGT+TGG | 0.529172 | 8_1:+27750808 | None:intergenic |
| CCAAATCCAAATGTTGAGGT+TGG | 0.529539 | 8_1:+27750394 | None:intergenic |
| CCAAATCCAAATGTTGAGGT+TGG | 0.529539 | 8_1:+27750532 | None:intergenic |
| CAATTGCCACCAGGAGAGCT+AGG | 0.534808 | 8_1:-27750056 | Msa1187830:CDS |
| TTCAAAGACAATGTTCAAGA+AGG | 0.537403 | 8_1:-27750924 | Msa1187830:CDS |
| CATCTGAAAATCTTCAACAT+TGG | 0.541776 | 8_1:-27752496 | Msa1187830:CDS |
| AACCACGTACCTAGCTCTCC+TGG | 0.545227 | 8_1:+27750047 | None:intergenic |
| TCCACCACCATGGTGGCCAA+GGG | 0.545349 | 8_1:-27751363 | Msa1187830:CDS |
| GAAATTTGGAGGAATATGAA+AGG | 0.546481 | 8_1:-27752721 | Msa1187830:CDS |
| CAAAATCTATACATTGAGGT+TGG | 0.547188 | 8_1:+27750880 | None:intergenic |
| CCATTCCAAGAAAGTGTCCA+TGG | 0.548559 | 8_1:-27750369 | Msa1187830:CDS |
| CCATTCCAAGAAAGTGTCCA+TGG | 0.548559 | 8_1:-27750507 | Msa1187830:CDS |
| CCATTCCAAGAAAGTGTCCA+TGG | 0.548559 | 8_1:-27750645 | Msa1187830:CDS |
| GGGCCAGGTAGTTCAAGTAA+TGG | 0.563232 | 8_1:-27750987 | Msa1187830:CDS |
| GGAACCAAATCCTTACATTG+AGG | 0.564811 | 8_1:+27750666 | None:intergenic |
| ATATGAAAGGAATATAAGCA+TGG | 0.566014 | 8_1:-27752708 | Msa1187830:CDS |
| GGCCAAGGGGAGATGAAGAA+TGG | 0.566706 | 8_1:-27751349 | Msa1187830:CDS |
| CAATGAAGAAAGAAATTTGG+AGG | 0.568734 | 8_1:-27752732 | Msa1187830:CDS |
| GGAGCAAAATCTATACATTG+AGG | 0.569747 | 8_1:+27750876 | None:intergenic |
| TTATTAGGCCAATTGCCACC+AGG | 0.570900 | 8_1:-27750065 | Msa1187830:CDS |
| TATGAAAGGAATATAAGCAT+GGG | 0.585257 | 8_1:-27752707 | Msa1187830:CDS |
| ATTGAAGAGTATGCACAAGT+TGG | 0.590413 | 8_1:-27752588 | Msa1187830:CDS |
| GCCGCTATTGGGTTATCGAA+AGG | 0.591129 | 8_1:-27751324 | Msa1187830:CDS |
| TTCAGCAAATGGAAGCAACA+TGG | 0.595235 | 8_1:-27750292 | Msa1187830:CDS |
| CAATGTTCAAGAAGGAAACA+TGG | 0.598064 | 8_1:-27750916 | Msa1187830:CDS |
| GGAACCAAATCCAAATGTTG+AGG | 0.598561 | 8_1:+27750390 | None:intergenic |
| GGAACCAAATCCAAATGTTG+AGG | 0.598561 | 8_1:+27750528 | None:intergenic |
| AAATCTTCAACATTGGTGGA+AGG | 0.602303 | 8_1:-27752489 | Msa1187830:CDS |
| TCTCCCCTTGGCCACCATGG+TGG | 0.603176 | 8_1:+27751359 | None:intergenic |
| TGAGGTTTCCTATAGGGTGG+AGG | 0.603546 | 8_1:+27751293 | None:intergenic |
| CCAAAGAATGAAACCCAGCT+AGG | 0.605751 | 8_1:+27749977 | None:intergenic |
| CCAAATCCATACATTGACGT+TGG | 0.608283 | 8_1:+27750322 | None:intergenic |
| CCAAATCCATACATTGACGT+TGG | 0.608283 | 8_1:+27750460 | None:intergenic |
| CCAAATCCATACATTGACGT+TGG | 0.608283 | 8_1:+27750598 | None:intergenic |
| CCAAATCCATACATTGACGT+TGG | 0.608283 | 8_1:+27750736 | None:intergenic |
| GGAACCAAATCCATACATTG+AGG | 0.608410 | 8_1:+27750804 | None:intergenic |
| TCATGAGGTTTCCTATAGGG+TGG | 0.619245 | 8_1:+27751290 | None:intergenic |
| GATGTTGATGGAAATAATGG+AGG | 0.619588 | 8_1:-27751008 | Msa1187830:CDS |
| TTGGCTATTGTTAACAACCA+TGG | 0.620802 | 8_1:+27750689 | None:intergenic |
| ACCAAATCAACACAATGAGG+TGG | 0.621822 | 8_1:+27750951 | None:intergenic |
| AAGTGTTCATGGAACCAACA+TGG | 0.623776 | 8_1:-27750772 | Msa1187830:CDS |
| CCACCACCATGGTGGCCAAG+GGG | 0.638555 | 8_1:-27751362 | Msa1187830:CDS |
| TCCAGCAAATGAAAGCAACA+TGG | 0.639563 | 8_1:-27750430 | Msa1187830:CDS |
| TCCAGCAAATGAAAGCAACA+TGG | 0.639563 | 8_1:-27750568 | Msa1187830:CDS |
| AAGTGTCCATGGAACCGACA+TGG | 0.646793 | 8_1:-27750634 | Msa1187830:CDS |
| TCCATCAAATGGAAGCACCA+TGG | 0.648218 | 8_1:-27750706 | Msa1187830:CDS |
| AAGTGTTCCTGGAAGCAGCA+TGG | 0.648471 | 8_1:-27750844 | Msa1187830:CDS |
| TCCTTTCGATAACCCAATAG+CGG | 0.663958 | 8_1:+27751323 | None:intergenic |
| AAGTGTCCATGGAACCAACA+TGG | 0.668303 | 8_1:-27750358 | Msa1187830:CDS |
| AAGTGTCCATGGAACCAACA+TGG | 0.668303 | 8_1:-27750496 | Msa1187830:CDS |
| CAAGGGGAGATGAAGAATGG+TGG | 0.668606 | 8_1:-27751346 | Msa1187830:CDS |
| AAGAATGAAACCCAGCTAGG+TGG | 0.679661 | 8_1:+27749980 | None:intergenic |
| GGAACCAAATCAACACAATG+AGG | 0.681148 | 8_1:+27750948 | None:intergenic |
| TGGCTATGATAAGGGCAATG+TGG | 0.683056 | 8_1:+27750000 | None:intergenic |
| ATGTTGATGGAAATAATGGA+GGG | 0.683336 | 8_1:-27751007 | Msa1187830:CDS |
| CACCAGGAGAGCTAGGTACG+TGG | 0.686873 | 8_1:-27750049 | Msa1187830:CDS |
| AAATCACCAGAAAGTGCACA+AGG | 0.687654 | 8_1:-27752767 | Msa1187830:CDS |
| GCAATAGTGAAGTACCAACA+AGG | 0.715198 | 8_1:-27752434 | Msa1187830:CDS |
| CACGTACCTAGCTCTCCTGG+TGG | 0.720148 | 8_1:+27750050 | None:intergenic |
| ATTGAGTAACACTATAGACA+AGG | 0.724328 | 8_1:-27752612 | Msa1187830:CDS |
| AAGGTGTTCCACCACCATGG+TGG | 0.732712 | 8_1:-27751370 | Msa1187830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATAATTAATTTTAGTA+CGG | + | chr8_1:27751092-27751111 | None:intergenic | 10.0% |
| !!! | TATTTTTGTGAAATTATTAC+CGG | + | chr8_1:27750532-27750551 | None:intergenic | 15.0% |
| !!! | TATCTAAAATCTTAAAACAT+TGG | + | chr8_1:27750883-27750902 | None:intergenic | 15.0% |
| !!! | TAAGATTTTAGATAAAAATG+TGG | - | chr8_1:27750889-27750908 | Msa1187830:CDS | 15.0% |
| !!! | TGTTTTTTGTATTTTGAAAT+TGG | - | chr8_1:27751270-27751289 | Msa1187830:CDS | 15.0% |
| !! | TATGGAATTATTCCAAAAAA+TGG | - | chr8_1:27750176-27750195 | Msa1187830:CDS | 20.0% |
| !! | TCATTATAATGTTAATGGTT+CGG | - | chr8_1:27750304-27750323 | Msa1187830:CDS | 20.0% |
| !! | CATTGAATTTGAATATTTCT+TGG | + | chr8_1:27750331-27750350 | None:intergenic | 20.0% |
| !! | TTAAATATAATCACATGTCT+AGG | - | chr8_1:27750558-27750577 | Msa1187830:CDS | 20.0% |
| !!! | TAAGATTCTCATTATTTTGA+TGG | - | chr8_1:27751036-27751055 | Msa1187830:CDS | 20.0% |
| !!! | AAGATTCTCATTATTTTGAT+GGG | - | chr8_1:27751037-27751056 | Msa1187830:CDS | 20.0% |
| !! | TATTCAATTAAAAATCGAAG+TGG | - | chr8_1:27751105-27751124 | Msa1187830:CDS | 20.0% |
| !! | ATTCAATTAAAAATCGAAGT+GGG | - | chr8_1:27751106-27751125 | Msa1187830:CDS | 20.0% |
| !! | AAACAAAATACGAAAATCAT+TGG | + | chr8_1:27751231-27751250 | None:intergenic | 20.0% |
| !!! | TCCTTATTTTACTAAAATCA+GGG | + | chr8_1:27751502-27751521 | None:intergenic | 20.0% |
| ! | CAACAATGAAGAAAGAAATT+TGG | - | chr8_1:27749977-27749996 | Msa1187830:CDS | 25.0% |
| ! | ATATGAAAGGAATATAAGCA+TGG | - | chr8_1:27750004-27750023 | Msa1187830:CDS | 25.0% |
| ! | TATGAAAGGAATATAAGCAT+GGG | - | chr8_1:27750005-27750024 | Msa1187830:CDS | 25.0% |
| !!! | CTTATTGGTTTTCCATTTTT+TGG | + | chr8_1:27750191-27750210 | None:intergenic | 25.0% |
| ! | AAAGTGAAGTTTGATAGAAA+TGG | - | chr8_1:27750248-27750267 | Msa1187830:CDS | 25.0% |
| ! | GGACTTCATTATAATGTTAA+TGG | - | chr8_1:27750299-27750318 | Msa1187830:CDS | 25.0% |
| ! | TACATGAATTCGTTACTAAT+AGG | - | chr8_1:27750696-27750715 | Msa1187830:CDS | 25.0% |
| !! | TCTAATTTTGCATCGAATAA+GGG | + | chr8_1:27750825-27750844 | None:intergenic | 25.0% |
| !! | TTCTAATTTTGCATCGAATA+AGG | + | chr8_1:27750826-27750845 | None:intergenic | 25.0% |
| ! | AGAAGTTGAGCAATATATAA+AGG | - | chr8_1:27750842-27750861 | Msa1187830:CDS | 25.0% |
| ! | TGTGTGTCTGTATATATATT+GGG | - | chr8_1:27751003-27751022 | Msa1187830:CDS | 25.0% |
| ! | ATTTGTCTAATCAATGACAT+TGG | - | chr8_1:27751172-27751191 | Msa1187830:CDS | 25.0% |
| !!! | TTTTCGTATTTTGTTTCCTT+TGG | - | chr8_1:27751235-27751254 | Msa1187830:CDS | 25.0% |
| !!! | TAAACCGTAATATTTTGAAC+AGG | - | chr8_1:27751306-27751325 | Msa1187830:CDS | 25.0% |
| ! | GAAACCTGTTCAAAATATTA+CGG | + | chr8_1:27751313-27751332 | None:intergenic | 25.0% |
| !!! | CCTTATTTTACTAAAATCAG+GGG | + | chr8_1:27751501-27751520 | None:intergenic | 25.0% |
| !!! | CTCCTTATTTTACTAAAATC+AGG | + | chr8_1:27751503-27751522 | None:intergenic | 25.0% |
| !! | CATTTTATCTTGAAGATTCT+TGG | + | chr8_1:27751540-27751559 | None:intergenic | 25.0% |
| ! | ACTCATAATTATGATGTTGA+TGG | - | chr8_1:27751692-27751711 | Msa1187830:intron | 25.0% |
| !! | TATGATGTTGATGGAAATAA+TGG | - | chr8_1:27751701-27751720 | Msa1187830:intron | 25.0% |
| ! | GTTATTACTAAAAACCATGT+TGG | + | chr8_1:27751957-27751976 | None:intergenic | 25.0% |
| ! | GTTATTGTTAAAAACCATGT+CGG | + | chr8_1:27752095-27752114 | None:intergenic | 25.0% |
| ! | GTTATTGTTAAAAACCATGT+TGG | + | chr8_1:27752095-27752114 | None:intergenic | 25.0% |
| ! | GTTATTGTTAAAAACCATGT+TGG | + | chr8_1:27752095-27752114 | None:intergenic | 25.0% |
| CAATGAAGAAAGAAATTTGG+AGG | - | chr8_1:27749980-27749999 | Msa1187830:CDS | 30.0% | |
| GAAATTTGGAGGAATATGAA+AGG | - | chr8_1:27749991-27750010 | Msa1187830:CDS | 30.0% | |
| GAATATAAGCATGGGTATTA+TGG | - | chr8_1:27750013-27750032 | Msa1187830:CDS | 30.0% | |
| GGAATTGAAAAATCTTCGTA+AGG | - | chr8_1:27750034-27750053 | Msa1187830:CDS | 30.0% | |
| ATTGAGTAACACTATAGACA+AGG | - | chr8_1:27750100-27750119 | Msa1187830:CDS | 30.0% | |
| CATCTGAAAATCTTCAACAT+TGG | - | chr8_1:27750216-27750235 | Msa1187830:CDS | 30.0% | |
| CATTATAATGAAGTCCTTGT+TGG | + | chr8_1:27750295-27750314 | None:intergenic | 30.0% | |
| TTGTCATGTCTTATGACATT+TGG | - | chr8_1:27750413-27750432 | Msa1187830:CDS | 30.0% | |
| GTTGTAATCCAAATCAAAGA+AGG | - | chr8_1:27750435-27750454 | Msa1187830:CDS | 30.0% | |
| ATAAACGTTAGTGTCATGTT+TGG | + | chr8_1:27750500-27750519 | None:intergenic | 30.0% | |
| AAATATCATACACGAGTCAT+GGG | + | chr8_1:27750757-27750776 | None:intergenic | 30.0% | |
| ! | TGGTGTTAAACTCAATTGTA+TGG | - | chr8_1:27750909-27750928 | Msa1187830:CDS | 30.0% |
| !! | ATTTATCACAATGGGTTAAG+AGG | + | chr8_1:27750937-27750956 | None:intergenic | 30.0% |
| CATCACAGATTTATCACAAT+GGG | + | chr8_1:27750945-27750964 | None:intergenic | 30.0% | |
| ACATCACAGATTTATCACAA+TGG | + | chr8_1:27750946-27750965 | None:intergenic | 30.0% | |
| GTGTGTGTCTGTATATATAT+TGG | - | chr8_1:27751002-27751021 | Msa1187830:CDS | 30.0% | |
| AACACGTTTATATTGTCCAA+AGG | + | chr8_1:27751254-27751273 | None:intergenic | 30.0% | |
| !! | TATTTTGAACAGGTTTCCTT+TGG | - | chr8_1:27751316-27751335 | Msa1187830:CDS | 30.0% |
| GAAACCTCATGATCTAAAAA+AGG | - | chr8_1:27751433-27751452 | Msa1187830:intron | 30.0% | |
| !!! | CAATCCTTTTTTAGATCATG+AGG | + | chr8_1:27751440-27751459 | None:intergenic | 30.0% |
| CTCATGATCTAAAAAAGGAT+TGG | - | chr8_1:27751438-27751457 | Msa1187830:intron | 30.0% | |
| !! | CCCCTGATTTTAGTAAAATA+AGG | - | chr8_1:27751498-27751517 | Msa1187830:intron | 30.0% |
| TTATTATTGCTTCCATTTGG+TGG | + | chr8_1:27751647-27751666 | None:intergenic | 30.0% | |
| CCATTATTATTGCTTCCATT+TGG | + | chr8_1:27751650-27751669 | None:intergenic | 30.0% | |
| CCAAATGGAAGCAATAATAA+TGG | - | chr8_1:27751647-27751666 | Msa1187830:intron | 30.0% | |
| ! | ATGTTGATGGAAATAATGGA+GGG | - | chr8_1:27751705-27751724 | Msa1187830:intron | 30.0% |
| TCTTGAACATTGTCTTTGAA+TGG | + | chr8_1:27751788-27751807 | None:intergenic | 30.0% | |
| TTCAAAGACAATGTTCAAGA+AGG | - | chr8_1:27751788-27751807 | Msa1187830:intron | 30.0% | |
| CAAAATCTATACATTGAGGT+TGG | + | chr8_1:27751835-27751854 | None:intergenic | 30.0% | |
| AAATAACCAACCTCAATGTA+TGG | - | chr8_1:27751898-27751917 | Msa1187830:intron | 30.0% | |
| TAATAACCAACGTCAATGTA+TGG | - | chr8_1:27751970-27751989 | Msa1187830:intron | 30.0% | |
| CAATAATCAACGTCAACATT+TGG | - | chr8_1:27752450-27752469 | Msa1187830:CDS | 30.0% | |
| ! | CATTTGGATTTGTTTCCATT+TGG | - | chr8_1:27752466-27752485 | Msa1187830:CDS | 30.0% |
| !!! | CCTTCAACTTTTTTTCCAAA+TGG | + | chr8_1:27752484-27752503 | None:intergenic | 30.0% |
| CCATTTGGAAAAAAAGTTGA+AGG | - | chr8_1:27752481-27752500 | Msa1187830:CDS | 30.0% | |
| CAATAACCAACCAAAATGTT+TGG | - | chr8_1:27752519-27752538 | Msa1187830:CDS | 30.0% | |
| !! | ACAAATCCAAACATTTTGGT+TGG | + | chr8_1:27752528-27752547 | None:intergenic | 30.0% |
| ! | GGAAACAAATCCAAACATTT+TGG | + | chr8_1:27752532-27752551 | None:intergenic | 30.0% |
| !!! | CTTGGAGCATTTTTTTCATT+AGG | + | chr8_1:27752619-27752638 | None:intergenic | 30.0% |
| AAAAAATGCTCCAAGAAACA+AGG | - | chr8_1:27752624-27752643 | Msa1187830:CDS | 30.0% | |
| TTCTGTAAGGACAATTCATT+TGG | + | chr8_1:27752777-27752796 | None:intergenic | 30.0% | |
| CGTAAGGAAGTAAAAAATCC+AGG | - | chr8_1:27750050-27750069 | Msa1187830:CDS | 35.0% | |
| ! | ATTGAAGAGTATGCACAAGT+TGG | - | chr8_1:27750124-27750143 | Msa1187830:CDS | 35.0% |
| ! | TTTTCAGATGCAGCACTTAT+TGG | + | chr8_1:27750206-27750225 | None:intergenic | 35.0% |
| CTGAAAATCTTCAACATTGG+TGG | - | chr8_1:27750219-27750238 | Msa1187830:CDS | 35.0% | |
| AAATCTTCAACATTGGTGGA+AGG | - | chr8_1:27750223-27750242 | Msa1187830:CDS | 35.0% | |
| GAACTCCTAAACACAACAAT+AGG | - | chr8_1:27750383-27750402 | Msa1187830:CDS | 35.0% | |
| TGTACGTACCTTCTTTGATT+TGG | + | chr8_1:27750446-27750465 | None:intergenic | 35.0% | |
| TGACACTAACGTTTATGCTT+CGG | - | chr8_1:27750504-27750523 | Msa1187830:CDS | 35.0% | |
| !! | TATAGCATCGACATCTTTGA+TGG | + | chr8_1:27750616-27750635 | None:intergenic | 35.0% |
| GAAATATCATACACGAGTCA+TGG | + | chr8_1:27750758-27750777 | None:intergenic | 35.0% | |
| GACTCGTGTATGATATTTCA+AGG | - | chr8_1:27750759-27750778 | Msa1187830:CDS | 35.0% | |
| ! | AACAGGTTTCCTTTGGAAAA+AGG | - | chr8_1:27751323-27751342 | Msa1187830:CDS | 35.0% |
| AGATCATGAGGTTTCCTATA+GGG | + | chr8_1:27751428-27751447 | None:intergenic | 35.0% | |
| TAGATCATGAGGTTTCCTAT+AGG | + | chr8_1:27751429-27751448 | None:intergenic | 35.0% | |
| AGATAAAATGTCTGCACAAG+AGG | - | chr8_1:27751550-27751569 | Msa1187830:intron | 35.0% | |
| AATAACAACAGCGAAGTTAG+TGG | + | chr8_1:27751576-27751595 | None:intergenic | 35.0% | |
| TCAAATGAGTTACCACCAAA+TGG | - | chr8_1:27751632-27751651 | Msa1187830:intron | 35.0% | |
| ! | GATGTTGATGGAAATAATGG+AGG | - | chr8_1:27751704-27751723 | Msa1187830:intron | 35.0% |
| CAATGTTCAAGAAGGAAACA+TGG | - | chr8_1:27751796-27751815 | Msa1187830:intron | 35.0% | |
| GGAGCAAAATCTATACATTG+AGG | + | chr8_1:27751839-27751858 | None:intergenic | 35.0% | |
| TTGGTTCCATTTCCATCAAA+TGG | - | chr8_1:27751995-27752014 | Msa1187830:intron | 35.0% | |
| TTGGCTATTGTTAACAACCA+TGG | + | chr8_1:27752026-27752045 | None:intergenic | 35.0% | |
| CAATAACCAACGTCAATGTA+TGG | - | chr8_1:27752108-27752127 | Msa1187830:intron | 35.0% | |
| ! | TTGCTTTCATTTGCTGGAAA+TGG | + | chr8_1:27752142-27752161 | None:intergenic | 35.0% |
| CAATAACCAACCTCAACATT+TGG | - | chr8_1:27752174-27752193 | Msa1187830:intron | 35.0% | |
| !! | TAAAAACCATGTTGGTTCCA+TGG | + | chr8_1:27751949-27751968 | None:intergenic | 35.0% |
| CAATAACCAACGTCAATGTA+TGG | - | chr8_1:27752108-27752127 | Msa1187830:intron | 35.0% | |
| ! | TTGCTTTCATTTGCTGGAAA+TGG | + | chr8_1:27752142-27752161 | None:intergenic | 35.0% |
| CAATAACCAACCTCAACATT+TGG | - | chr8_1:27752174-27752193 | Msa1187830:intron | 35.0% | |
| !! | TAAAAACCATGTTGGTTCCA+TGG | + | chr8_1:27751949-27751968 | None:intergenic | 35.0% |
| CAATAACCAACGTCAATGTA+TGG | - | chr8_1:27752108-27752127 | Msa1187830:intron | 35.0% | |
| ! | TTGGTTCCATTTTCAGCAAA+TGG | - | chr8_1:27752409-27752428 | Msa1187830:CDS | 35.0% |
| ! | TTGCTTCCATTTGCTGAAAA+TGG | + | chr8_1:27752418-27752437 | None:intergenic | 35.0% |
| ! | TGTTTGGATTTGTTTCCATC+TGG | - | chr8_1:27752535-27752554 | Msa1187830:CDS | 35.0% |
| !!! | CCTTCAACATTTTTTCCAGA+TGG | + | chr8_1:27752553-27752572 | None:intergenic | 35.0% |
| CCATCTGGAAAAAATGTTGA+AGG | - | chr8_1:27752550-27752569 | Msa1187830:CDS | 35.0% | |
| TCTACCTCAATCTGCTAATT+TGG | - | chr8_1:27752591-27752610 | Msa1187830:CDS | 35.0% | |
| CTCCAAGAAACAAGGTTATT+AGG | - | chr8_1:27752632-27752651 | Msa1187830:CDS | 35.0% | |
| !! | CCAGAAGAGTTATTTCTGTA+AGG | + | chr8_1:27752790-27752809 | None:intergenic | 35.0% |
| CCTTACAGAAATAACTCTTC+TGG | - | chr8_1:27752787-27752806 | Msa1187830:CDS | 35.0% | |
| ! | AAATCACCAGAAAGTGCACA+AGG | - | chr8_1:27749945-27749964 | Msa1187830:CDS | 40.0% |
| CTATCATGTTCATTGTTGCC+TGG | + | chr8_1:27750071-27750090 | None:intergenic | 40.0% | |
| !! | CGTGCTGATGGATTTGTATA+TGG | - | chr8_1:27750158-27750177 | Msa1187830:CDS | 40.0% |
| ! | GCAATAGTGAAGTACCAACA+AGG | - | chr8_1:27750278-27750297 | Msa1187830:CDS | 40.0% |
| GTGCTCCTATTGTTGTGTTT+AGG | + | chr8_1:27750391-27750410 | None:intergenic | 40.0% | |
| !! | TGTCTAGGTGTCATTTCATG+TGG | - | chr8_1:27750573-27750592 | Msa1187830:CDS | 40.0% |
| TCCCAAAACACAGAGAGAAA+TGG | - | chr8_1:27750721-27750740 | Msa1187830:CDS | 40.0% | |
| ! | CCCATTTCTCTCTGTGTTTT+GGG | + | chr8_1:27750725-27750744 | None:intergenic | 40.0% |
| CCCAAAACACAGAGAGAAAT+GGG | - | chr8_1:27750722-27750741 | Msa1187830:CDS | 40.0% | |
| ! | ACCCATTTCTCTCTGTGTTT+TGG | + | chr8_1:27750726-27750745 | None:intergenic | 40.0% |
| CACATTATCAGGGCTTCTAA+GGG | + | chr8_1:27750977-27750996 | None:intergenic | 40.0% | |
| ACACATTATCAGGGCTTCTA+AGG | + | chr8_1:27750978-27750997 | None:intergenic | 40.0% | |
| CACACACAGACACATTATCA+GGG | + | chr8_1:27750987-27751006 | None:intergenic | 40.0% | |
| ACACACACAGACACATTATC+AGG | + | chr8_1:27750988-27751007 | None:intergenic | 40.0% | |
| TCCTTTCGATAACCCAATAG+CGG | + | chr8_1:27751392-27751411 | None:intergenic | 40.0% | |
| !! | TCCACCTCATTGTGTTGATT+TGG | - | chr8_1:27751760-27751779 | Msa1187830:intron | 40.0% |
| ACCAAATCAACACAATGAGG+TGG | + | chr8_1:27751764-27751783 | None:intergenic | 40.0% | |
| GGAACCAAATCAACACAATG+AGG | + | chr8_1:27751767-27751786 | None:intergenic | 40.0% | |
| ! | TTAATAACCATGCTGCTTCC+AGG | + | chr8_1:27751878-27751897 | None:intergenic | 40.0% |
| CCAAATCCATACATTGAGGT+TGG | + | chr8_1:27751907-27751926 | None:intergenic | 40.0% | |
| CCAACCTCAATGTATGGATT+TGG | - | chr8_1:27751904-27751923 | Msa1187830:intron | 40.0% | |
| GGAACCAAATCCATACATTG+AGG | + | chr8_1:27751911-27751930 | None:intergenic | 40.0% | |
| CCATGAACACTTTCTTGGAA+TGG | + | chr8_1:27751932-27751951 | None:intergenic | 40.0% | |
| !! | CCATTCCAAGAAAGTGTTCA+TGG | - | chr8_1:27751929-27751948 | Msa1187830:intron | 40.0% |
| TGGTTCCATGAACACTTTCT+TGG | + | chr8_1:27751937-27751956 | None:intergenic | 40.0% | |
| AAGTGTTCATGGAACCAACA+TGG | - | chr8_1:27751940-27751959 | Msa1187830:intron | 40.0% | |
| CCAAATCCATACATTGACGT+TGG | + | chr8_1:27751979-27751998 | None:intergenic | 40.0% | |
| CCAACGTCAATGTATGGATT+TGG | - | chr8_1:27751976-27751995 | Msa1187830:intron | 40.0% | |
| GTGCTTCCATTTGATGGAAA+TGG | + | chr8_1:27752004-27752023 | None:intergenic | 40.0% | |
| CAATAGCCAACCTCAATGTA+AGG | - | chr8_1:27752036-27752055 | Msa1187830:intron | 40.0% | |
| CCAAATCCTTACATTGAGGT+TGG | + | chr8_1:27752045-27752064 | None:intergenic | 40.0% | |
| CCAACCTCAATGTAAGGATT+TGG | - | chr8_1:27752042-27752061 | Msa1187830:intron | 40.0% | |
| GGAACCAAATCCTTACATTG+AGG | + | chr8_1:27752049-27752068 | None:intergenic | 40.0% | |
| !! | TAAAAACCATGTCGGTTCCA+TGG | + | chr8_1:27752087-27752106 | None:intergenic | 40.0% |
| CCAAATCCATACATTGACGT+TGG | + | chr8_1:27751979-27751998 | None:intergenic | 40.0% | |
| CCAACGTCAATGTATGGATT+TGG | - | chr8_1:27751976-27751995 | Msa1187830:intron | 40.0% | |
| TCCAGCAAATGAAAGCAACA+TGG | - | chr8_1:27752144-27752163 | Msa1187830:intron | 40.0% | |
| !! | ACCATGTTGCTTTCATTTGC+TGG | + | chr8_1:27752148-27752167 | None:intergenic | 40.0% |
| CCAAATCCAAATGTTGAGGT+TGG | + | chr8_1:27752183-27752202 | None:intergenic | 40.0% | |
| CCAACCTCAACATTTGGATT+TGG | - | chr8_1:27752180-27752199 | Msa1187830:intron | 40.0% | |
| GGAACCAAATCCAAATGTTG+AGG | + | chr8_1:27752187-27752206 | None:intergenic | 40.0% | |
| CCAAATCCATACATTGACGT+TGG | + | chr8_1:27751979-27751998 | None:intergenic | 40.0% | |
| CCAACGTCAATGTATGGATT+TGG | - | chr8_1:27751976-27751995 | Msa1187830:intron | 40.0% | |
| TCCAGCAAATGAAAGCAACA+TGG | - | chr8_1:27752144-27752163 | Msa1187830:intron | 40.0% | |
| !! | ACCATGTTGCTTTCATTTGC+TGG | + | chr8_1:27752148-27752167 | None:intergenic | 40.0% |
| CCAAATCCAAATGTTGAGGT+TGG | + | chr8_1:27752183-27752202 | None:intergenic | 40.0% | |
| CCAACCTCAACATTTGGATT+TGG | - | chr8_1:27752180-27752199 | Msa1187830:intron | 40.0% | |
| GGAACCAAATCCAAATGTTG+AGG | + | chr8_1:27752187-27752206 | None:intergenic | 40.0% | |
| CCAAATCCATACATTGACGT+TGG | + | chr8_1:27751979-27751998 | None:intergenic | 40.0% | |
| CCAACGTCAATGTATGGATT+TGG | - | chr8_1:27751976-27751995 | Msa1187830:intron | 40.0% | |
| TTCAGCAAATGGAAGCAACA+TGG | - | chr8_1:27752420-27752439 | Msa1187830:CDS | 40.0% | |
| GGAACCAAATTAGCAGATTG+AGG | + | chr8_1:27752598-27752617 | None:intergenic | 40.0% | |
| ! | GGCCTAATAACCTTGTTTCT+TGG | + | chr8_1:27752637-27752656 | None:intergenic | 40.0% |
| TCTTCACCTTGTGCACTTTC+TGG | + | chr8_1:27749954-27749973 | None:intergenic | 45.0% | |
| !! | ATGCACAAGTTGGTCGATCT+TGG | - | chr8_1:27750134-27750153 | Msa1187830:CDS | 45.0% |
| TGGTACTTCACTATTGCAGC+AGG | + | chr8_1:27750275-27750294 | None:intergenic | 45.0% | |
| TAACGTTTATGCTTCGGCAC+CGG | - | chr8_1:27750510-27750529 | Msa1187830:CDS | 45.0% | |
| !! | TCTTTGATGGAAGGAGTGTC+TGG | + | chr8_1:27750603-27750622 | None:intergenic | 45.0% |
| ! | GCATCGACATCTTTGATGGA+AGG | + | chr8_1:27750612-27750631 | None:intergenic | 45.0% |
| ! | GGTGGAACACCTTTTTCCAA+AGG | + | chr8_1:27751335-27751354 | None:intergenic | 45.0% |
| !! | AAAAAGGTGTTCCACCACCA+TGG | - | chr8_1:27751339-27751358 | Msa1187830:CDS | 45.0% |
| TTGGGTTATCGAAAGGATCC+AGG | - | chr8_1:27751395-27751414 | Msa1187830:intron | 45.0% | |
| TCATGAGGTTTCCTATAGGG+TGG | + | chr8_1:27751425-27751444 | None:intergenic | 45.0% | |
| GGCCAGGTAGTTCAAGTAAT+GGG | - | chr8_1:27751726-27751745 | Msa1187830:intron | 45.0% | |
| TGCCCATTACTTGAACTACC+TGG | + | chr8_1:27751731-27751750 | None:intergenic | 45.0% | |
| CCAGGAACACTTGCTTGAAA+AGG | + | chr8_1:27751860-27751879 | None:intergenic | 45.0% | |
| !! | CCTTTTCAAGCAAGTGTTCC+TGG | - | chr8_1:27751857-27751876 | Msa1187830:intron | 45.0% |
| !! | TCCATCAAATGGAAGCACCA+TGG | - | chr8_1:27752006-27752025 | Msa1187830:intron | 45.0% |
| ACCATGGTGCTTCCATTTGA+TGG | + | chr8_1:27752010-27752029 | None:intergenic | 45.0% | |
| CCATGGACACTTTCTTGGAA+TGG | + | chr8_1:27752070-27752089 | None:intergenic | 45.0% | |
| !! | CCATTCCAAGAAAGTGTCCA+TGG | - | chr8_1:27752067-27752086 | Msa1187830:intron | 45.0% |
| CCATGGACACTTTCTTGGAA+TGG | + | chr8_1:27752070-27752089 | None:intergenic | 45.0% | |
| !! | CCATTCCAAGAAAGTGTCCA+TGG | - | chr8_1:27752067-27752086 | Msa1187830:intron | 45.0% |
| TGGTTCCATGGACACTTTCT+TGG | + | chr8_1:27752213-27752232 | None:intergenic | 45.0% | |
| AAGTGTCCATGGAACCAACA+TGG | - | chr8_1:27752216-27752235 | Msa1187830:intron | 45.0% | |
| CCATGGACACTTTCTTGGAA+TGG | + | chr8_1:27752070-27752089 | None:intergenic | 45.0% | |
| !! | CCATTCCAAGAAAGTGTCCA+TGG | - | chr8_1:27752067-27752086 | Msa1187830:intron | 45.0% |
| TGGTTCCATGGACACTTTCT+TGG | + | chr8_1:27752213-27752232 | None:intergenic | 45.0% | |
| AAGTGTCCATGGAACCAACA+TGG | - | chr8_1:27752216-27752235 | Msa1187830:intron | 45.0% | |
| TTATTAGGCCAATTGCCACC+AGG | - | chr8_1:27752647-27752666 | Msa1187830:CDS | 45.0% | |
| TGGCTATGATAAGGGCAATG+TGG | + | chr8_1:27752715-27752734 | None:intergenic | 45.0% | |
| CAGCTAGGTGGCTATGATAA+GGG | + | chr8_1:27752723-27752742 | None:intergenic | 45.0% | |
| CTTATCATAGCCACCTAGCT+GGG | - | chr8_1:27752722-27752741 | Msa1187830:CDS | 45.0% | |
| AAGAATGAAACCCAGCTAGG+TGG | + | chr8_1:27752735-27752754 | None:intergenic | 45.0% | |
| CCAAAGAATGAAACCCAGCT+AGG | + | chr8_1:27752738-27752757 | None:intergenic | 45.0% | |
| CCTAGCTGGGTTTCATTCTT+TGG | - | chr8_1:27752735-27752754 | Msa1187830:CDS | 45.0% | |
| AGCTGGGTTTCATTCTTTGG+AGG | - | chr8_1:27752738-27752757 | Msa1187830:CDS | 45.0% | |
| CACCATTCTTCATCTCCCCT+TGG | + | chr8_1:27751368-27751387 | None:intergenic | 50.0% | |
| CAAGGGGAGATGAAGAATGG+TGG | - | chr8_1:27751366-27751385 | Msa1187830:CDS | 50.0% | |
| TGAAGAATGGTGGCCGCTAT+TGG | - | chr8_1:27751376-27751395 | Msa1187830:CDS | 50.0% | |
| GAAGAATGGTGGCCGCTATT+GGG | - | chr8_1:27751377-27751396 | Msa1187830:CDS | 50.0% | |
| GCCGCTATTGGGTTATCGAA+AGG | - | chr8_1:27751388-27751407 | Msa1187830:intron | 50.0% | |
| TGAGGTTTCCTATAGGGTGG+AGG | + | chr8_1:27751422-27751441 | None:intergenic | 50.0% | |
| ! | GATGGAAATAATGGAGGGCC+AGG | - | chr8_1:27751710-27751729 | Msa1187830:intron | 50.0% |
| GGGCCAGGTAGTTCAAGTAA+TGG | - | chr8_1:27751725-27751744 | Msa1187830:intron | 50.0% | |
| AAGTGTTCCTGGAAGCAGCA+TGG | - | chr8_1:27751868-27751887 | Msa1187830:intron | 50.0% | |
| CGGTTCCATGGACACTTTCT+TGG | + | chr8_1:27752075-27752094 | None:intergenic | 50.0% | |
| AAGTGTCCATGGAACCGACA+TGG | - | chr8_1:27752078-27752097 | Msa1187830:intron | 50.0% | |
| AGAGCTAGGTACGTGGTTAC+TGG | - | chr8_1:27752670-27752689 | Msa1187830:CDS | 50.0% | |
| CCAGCTAGGTGGCTATGATA+AGG | + | chr8_1:27752724-27752743 | None:intergenic | 50.0% | |
| CCTTATCATAGCCACCTAGC+TGG | - | chr8_1:27752721-27752740 | Msa1187830:CDS | 50.0% | |
| GTCGATCTTGGTCGTGCTGA+TGG | - | chr8_1:27750146-27750165 | Msa1187830:CDS | 55.0% | |
| ! | AAGGTGTTCCACCACCATGG+TGG | - | chr8_1:27751342-27751361 | Msa1187830:CDS | 55.0% |
| GGCCAAGGGGAGATGAAGAA+TGG | - | chr8_1:27751363-27751382 | Msa1187830:CDS | 55.0% | |
| ATCCAGGTCCTCCACCCTAT+AGG | - | chr8_1:27751411-27751430 | Msa1187830:intron | 55.0% | |
| TTCCTATAGGGTGGAGGACC+TGG | + | chr8_1:27751416-27751435 | None:intergenic | 55.0% | |
| ! | CTAGCTCTCCTGGTGGCAAT+TGG | + | chr8_1:27752658-27752677 | None:intergenic | 55.0% |
| CAATTGCCACCAGGAGAGCT+AGG | - | chr8_1:27752656-27752675 | Msa1187830:CDS | 55.0% | |
| ! | AACCACGTACCTAGCTCTCC+TGG | + | chr8_1:27752668-27752687 | None:intergenic | 55.0% |
| TTCCACCACCATGGTGGCCA+AGG | - | chr8_1:27751348-27751367 | Msa1187830:CDS | 60.0% | |
| TCCACCACCATGGTGGCCAA+GGG | - | chr8_1:27751349-27751368 | Msa1187830:CDS | 60.0% | |
| TCATCTCCCCTTGGCCACCA+TGG | + | chr8_1:27751359-27751378 | None:intergenic | 60.0% | |
| ! | CACGTACCTAGCTCTCCTGG+TGG | + | chr8_1:27752665-27752684 | None:intergenic | 60.0% |
| CACCAGGAGAGCTAGGTACG+TGG | - | chr8_1:27752663-27752682 | Msa1187830:CDS | 60.0% | |
| CCACCACCATGGTGGCCAAG+GGG | - | chr8_1:27751350-27751369 | Msa1187830:CDS | 65.0% | |
| TCTCCCCTTGGCCACCATGG+TGG | + | chr8_1:27751356-27751375 | None:intergenic | 65.0% | |
| CCCCTTGGCCACCATGGTGG+TGG | + | chr8_1:27751353-27751372 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 27749918 | 27752816 | 27749918 | ID=Msa1187830;Name=Msa1187830 |
| chr8_1 | mRNA | 27749918 | 27752816 | 27749918 | ID=Msa1187830-mRNA-1;Parent=Msa1187830;Name=Msa1187830-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0|0|1|1|1|2|0|675 |
| chr8_1 | exon | 27752278 | 27752816 | 27752278 | ID=Msa1187830-mRNA-1:exon:9749;Parent=Msa1187830-mRNA-1 |
| chr8_1 | exon | 27749918 | 27751406 | 27749918 | ID=Msa1187830-mRNA-1:exon:9748;Parent=Msa1187830-mRNA-1 |
| chr8_1 | CDS | 27752278 | 27752816 | 27752278 | ID=Msa1187830-mRNA-1:cds;Parent=Msa1187830-mRNA-1 |
| chr8_1 | CDS | 27749918 | 27751406 | 27749918 | ID=Msa1187830-mRNA-1:cds;Parent=Msa1187830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
